Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BTN3A1	0	genome.wustl.edu	37	6	26406396	26406396	+	Silent	SNP	C	C	T			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	6	26406396	26406396	C	T	SNP	BTN3A1	ENST00000289361	human	ensembl	69_37n	+1	known	silent	c.345	p.N115	0.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like,prints_Butyrophylin	-	no_errors	BTN3A1	HGNC	ENSG00000026950	14	0	0.00	21	7	25.00	-	-	-
CCNJ	0	genome.wustl.edu	37	10	97818297	97818297	+	RNA	SNP	T	T	C			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	10	97818297	97818297	T	C	SNP	CCNJ	ENST00000471424	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCNJ	HGNC	ENSG00000107443	45	0	0.00	46	7	13.21	-	-	-
CELP	0	genome.wustl.edu	37	9	135959979	135959979	+	RNA	SNP	C	C	T			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	9	135959979	135959979	C	T	SNP	CELP	ENST00000411440	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.917	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	9	0	0.00	4	4	50.00	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16956945	16956945	+	RNA	SNP	C	C	T			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	1	16956945	16956945	C	T	SNP	CROCCP2	ENST00000362058	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	13	0	0.00	21	6	22.22	-	-	-
CRTAC1	0	genome.wustl.edu	37	10	99640046	99640046	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	10	99640046	99640046	A	G	SNP	CRTAC1	ENST00000298819	human	ensembl	69_37n	-1	known	missense	c.1736	p.V579A	0.998	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC	-	no_errors	CRTAC1	HGNC	ENSG00000095713	77	0	0.00	82	12	12.77	-	-	-
LAMA1	0	genome.wustl.edu	37	18	6942135	6942135	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	18	6942135	6942135	G	T	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.9171	p.S3057R	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	31	0	0.00	30	4	11.43	-	-	-
PDE4DIP	0	genome.wustl.edu	37	1	145039866	145039866	+	RNA	SNP	A	A	G			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	1	145039866	145039866	A	G	SNP	PDE4DIP	ENST00000497529	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	10	0	0.00	10	7	41.18	-	-	-
PHKB	0	genome.wustl.edu	37	16	47703133	47703133	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	16	47703133	47703133	T	C	SNP	PHKB	ENST00000299167	human	ensembl	69_37n	+1	known	missense	c.2435	p.L812P	1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893	41	0	0.00	24	3	10.71	-	-	-
PLCB4	0	genome.wustl.edu	37	20	9460030	9460030	+	RNA	SNP	A	A	G			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	20	9460030	9460030	A	G	SNP	PLCB4	ENST00000464199	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLCB4	HGNC	ENSG00000101333	24	0	0.00	33	4	10.81	-	-	-
PRAMEF5	0	genome.wustl.edu	37	1	13365921	13365921	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	1	13365921	13365921	A	G	SNP	PRAMEF5	ENST00000376168	human	ensembl	69_37n	+1	known	missense	c.365	p.H122R	0.000	NULL	NULL	-	no_errors	PRAMEF5	HGNC	ENSG00000204502	20	0	0.00	42	16	27.59	-	-	-
TAS2R64P	0	genome.wustl.edu	37	12	11230496	11230496	+	RNA	SNP	G	G	A			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	12	11230496	11230496	G	A	SNP	TAS2R64P	ENST00000534866	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TAS2R64P	HGNC	ENSG00000256274	38	0	0.00	40	7	14.89	-	-	-
ZFHX4	0	genome.wustl.edu	37	8	77618657	77618657	+	Silent	SNP	C	C	T			TCGA-A2-A3XW-01A-11D-A23C-09	TCGA-A2-A3XW-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d1d0f9d0-4c1a-41ca-8711-9ff7e52979b4	9d285e2e-a3d5-42e4-8290-619d6d3adeef	8	77618657	77618657	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	69_37n	+1	known	silent	c.2334	p.V778	0.657	smart_Znf_C2H2-like	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	31	0	0.00	35	5	12.50	-	-	-
