Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
B4GALNT2	0	genome.wustl.edu	37	17	47247044	47247044	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	17	47247044	47247044	A	G	SNP	B4GALNT2	ENST00000300404	human	ensembl	69_37n	+1	known	missense	c.1655	p.K552R	1.000	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080	79	0	0.00	39	31	44.29	-	-	-
BRCA1	0	genome.wustl.edu	37	17	41258536	41258536	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	17	41258536	41258536	T	G	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.149	p.K50T	1.000	pirsf_BRCA1,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	47	0	0.00	35	14	28.57	-	-	-
CATSPER2P1	0	genome.wustl.edu	37	15	44028223	44028223	+	RNA	SNP	C	C	T			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	15	44028223	44028223	C	T	SNP	CATSPER2P1	ENST00000381680	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CATSPER2P1	HGNC	ENSG00000205771	14	0	0.00	13	5	27.78	-	-	-
FAM208B	0	genome.wustl.edu	37	10	5756146	5756146	+	RNA	SNP	A	A	G			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	10	5756146	5756146	A	G	SNP	FAM208B	ENST00000463468	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.254	-	-	-	no_errors	FAM208B	HGNC	ENSG00000108021	51	0	0.00	25	14	35.90	-	-	-
FAM83B	0	genome.wustl.edu	37	6	54805818	54805818	+	Silent	SNP	T	T	C			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	6	54805818	54805818	T	C	SNP	FAM83B	ENST00000306858	human	ensembl	69_37n	+1	known	silent	c.2049	p.Y683	1.000	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143	53	0	0.00	30	19	38.78	-	-	-
FBXL21	0	genome.wustl.edu	37	5	135276438	135276438	+	RNA	SNP	T	T	C			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	5	135276438	135276438	T	C	SNP	FBXL21	ENST00000467490	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FBXL21	HGNC	ENSG00000164616	30	0	0.00	20	3	13.04	-	-	-
HMCN2	0	genome.wustl.edu	37	9	133266442	133266442	+	RNA	SNP	C	C	T			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	9	133266442	133266442	C	T	SNP	HMCN2	ENST00000487727	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMCN2	HGNC	ENSG00000148357	8	0	0.00	4	4	50.00	-	-	-
KRT16P1	0	genome.wustl.edu	37	17	18345128	18345128	+	RNA	SNP	C	C	T			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	17	18345128	18345128	C	T	SNP	KRT16P1	ENST00000581027	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT16P1	HGNC	ENSG00000214856	14	0	0.00	2	2	50.00	-	-	-
LIMK1	0	genome.wustl.edu	37	7	73535625	73535625	+	Silent	SNP	C	C	T			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	7	73535625	73535625	C	T	SNP	LIMK1	ENST00000336180	human	ensembl	69_37n	+1	known	silent	c.1938	p.P646	0.275	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683	24	0	0.00	12	8	40.00	-	-	-
NOD1	0	genome.wustl.edu	37	7	30492497	30492498	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	7	30492497	30492498	CT	-	DEL	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	frame_shift_del	c.536_535	p.S179fs	0.732:0.095	NULL	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	50	0	0.00	26	23	46.94	-	-	-
PCNXL2	0	genome.wustl.edu	37	1	233119951	233119951	+	RNA	SNP	C	C	T			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	1	233119951	233119951	C	T	SNP	PCNXL2	ENST00000462762	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCNXL2	HGNC	ENSG00000135749	27	0	0.00	31	5	13.51	-	-	-
SAMD11	0	genome.wustl.edu	37	1	879085	879085	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	1	879085	879085	G	T	SNP	SAMD11	ENST00000342066	human	ensembl	69_37n	+1	known	missense	c.1697	p.R566M	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD11	HGNC	ENSG00000187634	34	0	0.00	23	4	14.81	-	-	-
SLC12A7	0	genome.wustl.edu	37	5	1075565	1075565	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	5	1075565	1075565	T	C	SNP	SLC12A7	ENST00000264930	human	ensembl	69_37n	-1	known	missense	c.1888	p.M630V	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A7	HGNC	ENSG00000113504	44	0	0.00	14	9	39.13	-	-	-
SMG1	0	genome.wustl.edu	37	16	18877754	18877754	+	RNA	SNP	A	A	G			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	16	18877754	18877754	A	G	SNP	SMG1	ENST00000566328	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.649	-	-	-	no_errors	SMG1	HGNC	ENSG00000157106	55	0	0.00	35	4	10.26	-	-	-
USP44	0	genome.wustl.edu	37	12	95926683	95926683	+	Silent	SNP	G	G	T			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	12	95926683	95926683	G	T	SNP	USP44	ENST00000258499	human	ensembl	69_37n	-1	known	silent	c.1350	p.I450	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP44	HGNC	ENSG00000136014	38	0	0.00	22	3	12.00	-	-	-
USP5	0	genome.wustl.edu	37	12	6964624	6964624	+	Silent	SNP	T	T	C			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	12	6964624	6964624	T	C	SNP	USP5	ENST00000229268	human	ensembl	69_37n	+1	known	silent	c.171	p.Y57	1.000	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	59	0	0.00	37	15	28.85	-	-	-
VCX3B	0	genome.wustl.edu	37	X	8434192	8434193	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A4S0-01A-21D-A25Q-09	TCGA-A2-A4S0-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9929b767-3bd5-4081-824c-f127623f2730	2a035c54-5e78-4f3a-8bb3-ad04e96d899e	X	8434192	8434193	-	C	INS	VCX3B	ENST00000444481	human	ensembl	69_37n	+1	known	frame_shift_ins	c.419_420	p.E141fs	0.000:0.001	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	36	0	0.00	9	2	18.18	-	-	-
