Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANP32B	0	genome.wustl.edu	37	9	100757043	100757043	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	100757043	100757043	A	T	SNP	ANP32B	ENST00000339399	human	ensembl	69_37n	+1	known	missense	c.185	p.K62M	1.000	NULL	smart_U2A'_phosphoprotein32A_C	-	no_errors	ANP32B	HGNC	ENSG00000136938	65	0	0.00	46	7	13.21	-	-	-
ANXA11	0	genome.wustl.edu	37	10	81915536	81915536	+	RNA	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	10	81915536	81915536	C	G	SNP	ANXA11	ENST00000463340	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANXA11	HGNC	ENSG00000122359	115	0	0.00	87	27	23.68	-	-	-
AQR	0	genome.wustl.edu	37	15	35198909	35198909	+	Silent	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	15	35198909	35198909	A	G	SNP	AQR	ENST00000156471	human	ensembl	69_37n	-1	known	silent	c.1668	p.L556	0.998	NULL	NULL	-	no_errors	AQR	HGNC	ENSG00000021776	87	0	0.00	30	23	43.40	-	-	-
ATP1A1	0	genome.wustl.edu	37	1	116931552	116931552	+	Nonsense_Mutation	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	116931552	116931552	C	G	SNP	ATP1A1	ENST00000295598	human	ensembl	69_37n	+1	known	nonsense	c.665	p.S222*	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP1A1	HGNC	ENSG00000163399	27	0	0.00	22	10	31.25	-	-	-
BAIAP2	0	genome.wustl.edu	37	17	79079916	79079916	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	79079916	79079916	A	T	SNP	BAIAP2	ENST00000321300	human	ensembl	69_37n	+1	known	missense	c.1307	p.D436V	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866	52	0	0.00	60	17	21.79	-	-	-
BBS12	0	genome.wustl.edu	37	4	123664881	123664881	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	123664881	123664881	G	T	SNP	BBS12	ENST00000314218	human	ensembl	69_37n	+1	known	nonsense	c.1834	p.E612*	0.997	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS12	HGNC	ENSG00000181004	36	0	0.00	25	3	10.71	-	-	-
C11orf9	0	genome.wustl.edu	37	11	61537881	61537881	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	11	61537881	61537881	G	A	SNP	C11orf9	ENST00000278836	human	ensembl	69_37n	+1	known	silent	c.624	p.K208	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	C11orf9	HGNC	ENSG00000124920	25	0	0.00	24	11	31.43	-	-	-
C9orf57	0	genome.wustl.edu	37	9	74674237	74674237	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	74674237	74674237	A	G	SNP	C9orf57	ENST00000377024	human	ensembl	69_37n	-1	known	missense	c.77	p.I26T	0.000	NULL	NULL	-	no_errors	C9orf57	HGNC	ENSG00000204669	35	0	0.00	10	16	61.54	-	-	-
CASP8AP2	0	genome.wustl.edu	37	6	90566870	90566870	+	RNA	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	90566870	90566870	G	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412	53	0	0.00	53	22	29.33	-	-	-
CBWD1	0	genome.wustl.edu	37	9	121751	121751	+	RNA	SNP	T	T	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	121751	121751	T	A	SNP	CBWD1	ENST00000475990	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.071	-	-	-	no_errors	CBWD1	HGNC	ENSG00000172785	34	0	0.00	26	6	18.18	-	-	-
CD19	0	genome.wustl.edu	37	16	28948386	28948386	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	28948386	28948386	C	G	SNP	CD19	ENST00000538922	human	ensembl	69_37n	+1	known	missense	c.1127	p.P376R	0.000	NULL	smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD19	HGNC	ENSG00000177455	41	0	0.00	31	19	38.00	-	-	-
CHAMP1	0	genome.wustl.edu	37	13	115091669	115091669	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	13	115091669	115091669	A	C	SNP	CHAMP1	ENST00000361283	human	ensembl	69_37n	+1	known	missense	c.2352	p.L784F	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CHAMP1	HGNC	ENSG00000198824	22	0	0.00	12	5	29.41	-	-	-
CMYA5	0	genome.wustl.edu	37	5	79084846	79084846	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	5	79084846	79084846	G	C	SNP	CMYA5	ENST00000446378	human	ensembl	69_37n	+1	known	missense	c.11608	p.D3870H	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	49	0	0.00	33	18	35.29	-	-	-
COG7	0	genome.wustl.edu	37	16	23457182	23457182	+	Silent	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	23457182	23457182	G	T	SNP	COG7	ENST00000307149	human	ensembl	69_37n	-1	known	silent	c.270	p.V90	0.999	pfam_COG_su7	pfam_COG_su7	-	no_errors	COG7	HGNC	ENSG00000168434	51	0	0.00	61	19	23.75	-	-	-
COPA	0	genome.wustl.edu	37	1	160261648	160261648	+	Silent	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	160261648	160261648	C	T	SNP	COPA	ENST00000368069	human	ensembl	69_37n	-1	known	silent	c.3246	p.L1082	1.000	pfam_Coatomer_asu_C,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPA	HGNC	ENSG00000122218	101	0	0.00	95	28	22.76	-	-	-
CSF3	0	genome.wustl.edu	37	17	38172764	38172764	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	38172764	38172764	C	G	SNP	CSF3	ENST00000225474	human	ensembl	69_37n	+1	known	missense	c.339	p.S113R	0.000	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,pirsf_IL6_MGF_GCSF,prints_IL6_MGF_GCSF	pfam_IL6_MGF_GCSF,superfamily_4_helix_cytokine-like_core,smart_IL6_MGF_GCSF,pirsf_IL6_MGF_GCSF,prints_IL6_MGF_GCSF	-	no_errors	CSF3	HGNC	ENSG00000108342	56	0	0.00	18	23	54.76	-	-	-
CSMD1	0	genome.wustl.edu	37	8	2824186	2824186	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	2824186	2824186	G	T	SNP	CSMD1	ENST00000335551	human	ensembl	69_37n	-1	novel	missense	c.7258	p.L2420I	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_CUB,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CSMD1	HGNC	ENSG00000183117	64	0	0.00	35	5	12.50	-	-	-
CYP2D7P1	0	genome.wustl.edu	37	22	42540319	42540319	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	22	42540319	42540319	A	C	SNP	CYP2D7P1	ENST00000433992	human	ensembl	69_37n	-1	known	missense	c.147	p.C49W	0.950	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CYP2D7P1	HGNC	ENSG00000205702	121	0	0.00	49	35	41.67	-	-	-
DAPK1	0	genome.wustl.edu	37	9	90301529	90301529	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	90301529	90301529	T	C	SNP	DAPK1	ENST00000469640	human	ensembl	69_37n	+1	known	missense	c.2288	p.M763T	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death,pfscan_Prot_kinase_cat_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730	95	0	0.00	53	25	32.05	-	-	-
DCHS2	0	genome.wustl.edu	37	4	155219402	155219402	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	155219402	155219402	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.4699	p.V1567I	0.062	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	58	0	0.00	44	18	29.03	-	-	-
DMBX1	0	genome.wustl.edu	37	1	46977811	46977811	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	46977811	46977811	G	A	SNP	DMBX1	ENST00000371956	human	ensembl	69_37n	+1	known	missense	c.794	p.R265H	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DMBX1	HGNC	ENSG00000197587	133	0	0.00	37	37	50.00	-	-	-
DMBX1	0	genome.wustl.edu	37	1	46977813	46977813	+	Silent	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	46977813	46977813	C	T	SNP	DMBX1	ENST00000371956	human	ensembl	69_37n	+1	known	silent	c.796	p.L266	1.000	NULL	pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain	-	no_errors	DMBX1	HGNC	ENSG00000197587	135	0	0.00	40	38	48.72	-	-	-
EEF1B2	0	genome.wustl.edu	37	2	207026111	207026111	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	207026111	207026111	C	T	SNP	EEF1B2	ENST00000236957	human	ensembl	69_37n	+1	known	missense	c.245	p.A82V	0.884	NULL	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Glutathione-S-Trfase_C-like,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1B2	HGNC	ENSG00000114942	76	0	0.00	49	11	18.33	-	-	-
EGFR	0	genome.wustl.edu	37	7	55223574	55223574	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	7	55223574	55223574	A	G	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	+1	known	missense	c.941	p.D314G	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	85	0	0.00	69	28	28.57	-	-	-
ENG	0	genome.wustl.edu	37	9	130578203	130578203	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	130578203	130578203	G	T	SNP	ENG	ENST00000344849	human	ensembl	69_37n	-1	known	missense	c.1871	p.P624Q	0.600	NULL	pfam_Zona_pellucida_Endoglin/CD105	-	no_errors	ENG	HGNC	ENSG00000106991	36	0	0.00	23	5	17.86	-	-	-
EXOC6B	0	genome.wustl.edu	37	2	72802668	72802668	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	72802668	72802668	G	A	SNP	EXOC6B	ENST00000272427	human	ensembl	69_37n	-1	known	nonsense	c.799	p.Q267*	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6B	HGNC	ENSG00000144036	94	0	0.00	37	21	36.21	-	-	-
FAM198A	0	genome.wustl.edu	37	3	43074558	43074558	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	43074558	43074558	T	G	SNP	FAM198A	ENST00000273146	human	ensembl	69_37n	+1	known	missense	c.803	p.M268R	0.371	NULL	NULL	-	no_errors	FAM198A	HGNC	ENSG00000144649	56	0	0.00	18	21	53.85	-	-	-
FAM24A	0	genome.wustl.edu	37	10	124672467	124672467	+	Silent	SNP	C	C	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	10	124672467	124672467	C	A	SNP	FAM24A	ENST00000368894	human	ensembl	69_37n	+1	known	silent	c.315	p.L105	0.088	NULL	NULL	-	no_errors	FAM24A	HGNC	ENSG00000203795	68	0	0.00	50	23	31.51	-	-	-
FAM26D	0	genome.wustl.edu	37	6	116875493	116875493	+	Silent	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	116875493	116875493	T	C	SNP	FAM26D	ENST00000368596	human	ensembl	69_37n	+1	known	silent	c.537	p.L179	1.000	NULL	NULL	-	no_errors	FAM26D	HGNC	ENSG00000164451	32	0	0.00	21	3	12.50	-	-	-
FATE1	0	genome.wustl.edu	37	X	150884628	150884628	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	X	150884628	150884628	G	T	SNP	FATE1	ENST00000370350	human	ensembl	69_37n	+1	known	nonsense	c.37	p.E13*	0.001	NULL	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378	40	0	0.00	35	4	10.26	-	-	-
FBXL2	0	genome.wustl.edu	37	3	33416911	33416911	+	Splice_Site	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	33416911	33416911	G	T	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	+1	known	splice_site	c.788+1	e10+1	1.000	-	-	-	no_errors	FBXL2	HGNC	ENSG00000153558	58	0	0	53	43	44.79	-	-	-
FBXL2	0	genome.wustl.edu	37	3	33416911	33416911	+	Splice_Site	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	33416911	33416911	G	T	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	+1	known	splice_site	c.788+1	e10+1	1.000	-	-	-	no_errors	FBXL2	HGNC	ENSG00000153558	58	0	0.00	53	43	44.79	-	-	-
FGFR1	0	genome.wustl.edu	37	8	38273484	38273484	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	38273484	38273484	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.1851	p.N617	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	62	0	0.00	111	18	13.95	-	-	-
FSIP2	0	genome.wustl.edu	37	2	186627943	186627943	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	186627943	186627943	T	C	SNP	FSIP2	ENST00000343098	human	ensembl	69_37n	+1	known	missense	c.1541	p.I514T	0.149	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	34	0	0.00	33	4	10.81	-	-	-
FXYD3	0	genome.wustl.edu	37	19	35613803	35613803	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	19	35613803	35613803	A	G	SNP	FXYD3	ENST00000346446	human	ensembl	69_37n	+1	known	missense	c.232	p.T78A	0.000	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD3	HGNC	ENSG00000089356	29	0	0.00	32	13	28.89	-	-	-
GP5	0	genome.wustl.edu	37	3	194118419	194118419	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	194118419	194118419	C	G	SNP	GP5	ENST00000323007	human	ensembl	69_37n	-1	known	missense	c.593	p.R198T	0.001	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP5	HGNC	ENSG00000178732	31	0	0.00	25	13	34.21	-	-	-
GRXCR1	0	genome.wustl.edu	37	4	43032455	43032455	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	43032455	43032455	G	T	SNP	GRXCR1	ENST00000399770	human	ensembl	69_37n	+1	known	missense	c.771	p.K257N	1.000	superfamily_HSP_DnaJ_Cys-rich_dom	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203	79	0	0.00	69	25	26.60	-	-	-
HIRIP3	0	genome.wustl.edu	37	16	30005877	30005877	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	30005877	30005877	C	T	SNP	HIRIP3	ENST00000279392	human	ensembl	69_37n	-1	known	missense	c.589	p.E197K	0.008	NULL	pfam_Histone_chaperone_domain_CHZ	-	no_errors	HIRIP3	HGNC	ENSG00000149929	163	0	0.00	142	59	29.35	-	-	-
HIST1H1E	0	genome.wustl.edu	37	6	26156885	26156885	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	26156885	26156885	C	G	SNP	HIST1H1E	ENST00000304218	human	ensembl	69_37n	+1	known	missense	c.267	p.S89R	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298	92	0	0.00	63	25	28.41	-	-	-
HOXA-AS2	0	genome.wustl.edu	37	7	27147487	27147487	+	RNA	SNP	A	A	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	7	27147487	27147487	A	T	SNP	HOXA-AS2	ENST00000518088	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.211	-	-	-	no_errors	HOXA-AS2	HGNC	ENSG00000253552	39	0	0.00	22	8	25.81	-	-	-
HS3ST1	0	genome.wustl.edu	37	4	11401364	11401364	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	11401364	11401364	A	T	SNP	HS3ST1	ENST00000002596	human	ensembl	69_37n	-1	known	missense	c.266	p.F89Y	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST1	HGNC	ENSG00000002587	57	0	0.00	28	5	15.15	-	-	-
IL18R1	0	genome.wustl.edu	37	2	103013176	103013176	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	103013176	103013176	C	A	SNP	IL18R1	ENST00000233957	human	ensembl	69_37n	+1	known	missense	c.1456	p.P486T	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like,prints_IL1_rcpt_1,prints_IL1_rcpt_I/II	-	no_errors	IL18R1	HGNC	ENSG00000115604	54	0	0.00	28	15	34.88	-	-	-
INTS9	0	genome.wustl.edu	37	8	28627466	28627466	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	28627466	28627466	G	A	SNP	INTS9	ENST00000517383	human	ensembl	69_37n	-1	novel	missense	c.161	p.S54F	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	INTS9	HGNC	ENSG00000104299	56	0	0.00	23	26	53.06	-	-	-
ITPR1	0	genome.wustl.edu	37	3	4836817	4836817	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	4836817	4836817	G	A	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	+1	known	missense	c.6832	p.V2278I	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	114	0	0.00	134	39	22.54	-	-	-
KCNN3	0	genome.wustl.edu	37	1	154680665	154680665	+	Silent	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	154680665	154680665	C	T	SNP	KCNN3	ENST00000271915	human	ensembl	69_37n	-1	known	silent	c.1983	p.S661	0.426	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	49	0	0.00	36	19	34.55	-	-	-
KIAA0753	0	genome.wustl.edu	37	17	6503709	6503709	+	Silent	SNP	G	G	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	6503709	6503709	G	C	SNP	KIAA0753	ENST00000361413	human	ensembl	69_37n	-1	known	silent	c.2079	p.V693	0.929	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920	48	0	0.00	24	8	25.00	-	-	-
KRT8P11	0	genome.wustl.edu	37	9	102067452	102067452	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	102067452	102067452	C	A	SNP	KRT8P11	ENST00000409686	human	ensembl	69_37n	+1	known	missense	c.59	p.S20Y	0.413	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT8P11	HGNC	ENSG00000259197	46	0	0.00	11	11	50.00	-	-	-
KRTAP17-1	0	genome.wustl.edu	37	17	39471766	39471767	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	39471766	39471767	-	C	INS	KRTAP17-1	ENST00000334202	human	ensembl	69_37n	-1	known	frame_shift_ins	c.137_136	p.S46fs	0.000:0.001	NULL	NULL	-	no_errors	KRTAP17-1	HGNC	ENSG00000186860	18	0	0.00	14	3	17.65	-	-	-
LAMA1	0	genome.wustl.edu	37	18	7013948	7013948	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	18	7013948	7013948	A	C	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.3229	p.C1077G	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	52	0	0.00	32	8	20.00	-	-	-
LRAT	0	genome.wustl.edu	37	4	155665479	155665479	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	155665479	155665479	A	G	SNP	LRAT	ENST00000336356	human	ensembl	69_37n	+1	known	missense	c.1	p.M1V	1.000	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207	42	0	0.00	26	12	31.58	-	-	-
MDM1	0	genome.wustl.edu	37	12	68696589	68696589	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	12	68696589	68696589	G	A	SNP	MDM1	ENST00000303145	human	ensembl	69_37n	-1	known	silent	c.1783	p.L595	0.820	NULL	NULL	-	no_errors	MDM1	HGNC	ENSG00000111554	35	0	0.00	27	15	35.71	-	-	-
MEG3	0	genome.wustl.edu	37	14	101300843	101300843	+	RNA	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	14	101300843	101300843	G	A	SNP	MEG3	ENST00000398461	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MEG3	HGNC	ENSG00000214548	34	0	0.00	23	4	14.81	-	-	-
MGLL	0	genome.wustl.edu	37	3	127434754	127434754	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	127434754	127434754	T	G	SNP	MGLL	ENST00000496306	human	ensembl	69_37n	-1	novel	missense	c.139	p.N47H	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MGLL	HGNC	ENSG00000074416	47	0	0.00	23	8	25.81	-	-	-
MIR3130-1	0	genome.wustl.edu	37	2	207647981	207647981	+	RNA	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	207647981	207647981	C	T	SNP	MIR3130-1	ENST00000579223	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	MIR3130-1	HGNC	ENSG00000263468	23	0	0.00	17	4	19.05	-	-	-
MTERFD3	0	genome.wustl.edu	37	12	107371522	107371522	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	12	107371522	107371522	T	A	SNP	MTERFD3	ENST00000240050	human	ensembl	69_37n	-1	known	missense	c.971	p.E324V	1.000	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832	98	0	0.00	88	39	30.71	-	-	-
MUC4	0	genome.wustl.edu	37	3	195506483	195506483	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	195506483	195506483	T	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11968	p.T3990A	0.002	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	12	0	0.00	18	9	31.03	-	-	-
MYO5A	0	genome.wustl.edu	37	15	52659300	52659300	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	15	52659300	52659300	C	T	SNP	MYO5A	ENST00000358212	human	ensembl	69_37n	-1	known	missense	c.3088	p.E1030K	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_Skp1_comp_dimer,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5A	HGNC	ENSG00000197535	116	0	0.00	43	27	38.57	-	-	-
OR13J1	0	genome.wustl.edu	37	9	35870121	35870121	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	35870121	35870121	G	A	SNP	OR13J1	ENST00000377981	human	ensembl	69_37n	-1	known	missense	c.278	p.S93F	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13J1	HGNC	ENSG00000168828	37	0	0.00	32	12	27.27	-	-	-
OR2Y1	0	genome.wustl.edu	37	5	180166248	180166248	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	5	180166248	180166248	T	C	SNP	OR2Y1	ENST00000307832	human	ensembl	69_37n	-1	known	missense	c.811	p.K271E	0.158	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339	53	0	0.00	28	18	39.13	-	-	-
OR7A17	0	genome.wustl.edu	37	19	14991371	14991371	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	19	14991371	14991371	T	C	SNP	OR7A17	ENST00000327462	human	ensembl	69_37n	-1	known	missense	c.797	p.H266R	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7A17	HGNC	ENSG00000185385	81	0	0.00	62	24	27.91	-	-	-
OXR1	0	genome.wustl.edu	37	8	107715274	107715274	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	8	107715274	107715274	G	A	SNP	OXR1	ENST00000442977	human	ensembl	69_37n	+1	known	missense	c.819	p.M273I	1.000	NULL	pfam_TLDc,pfam_Peptidoglycan-bd_lysin,pfam_GRAM,smart_Peptidoglycan-bd_Lysin_subgr,smart_TLDc	-	no_errors	OXR1	HGNC	ENSG00000164830	59	0	0.00	58	20	25.64	-	-	-
PPIG	0	genome.wustl.edu	37	2	170470979	170470979	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	170470979	170470979	C	G	SNP	PPIG	ENST00000260970	human	ensembl	69_37n	+1	known	missense	c.383	p.T128R	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIG	HGNC	ENSG00000138398	35	0	0.00	28	4	12.50	-	-	-
PRIC285	0	genome.wustl.edu	37	20	62195420	62195420	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	20	62195420	62195420	G	A	SNP	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	silent	c.4755	p.H1585	0.000	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	64	0	0.00	32	13	28.89	-	-	-
PRKCB	0	genome.wustl.edu	37	16	24196452	24196452	+	Silent	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	16	24196452	24196452	T	C	SNP	PRKCB	ENST00000303531	human	ensembl	69_37n	+1	known	silent	c.1554	p.Y518	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_Ca-dep,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd,prints_C2_dom,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	116	0	0.00	79	33	29.46	-	-	-
PSPC1	0	genome.wustl.edu	37	13	20283700	20283700	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	13	20283700	20283700	C	A	SNP	PSPC1	ENST00000338910	human	ensembl	69_37n	-1	known	nonsense	c.1198	p.G400*	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390	98	0	0.00	77	48	38.40	-	-	-
PTGFRN	0	genome.wustl.edu	37	1	117504034	117504034	+	Silent	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	117504034	117504034	C	T	SNP	PTGFRN	ENST00000393203	human	ensembl	69_37n	+1	known	silent	c.1383	p.S461	0.683	smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	PTGFRN	HGNC	ENSG00000134247	66	0	0.00	47	17	26.56	-	-	-
PTPN7	0	genome.wustl.edu	37	1	202130671	202130671	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	202130671	202130671	G	T	SNP	PTPN7	ENST00000477554	human	ensembl	69_37n	-1	putative	nonsense	c.39	p.C13*	0.242	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt	-	no_start_codon	PTPN7	HGNC	ENSG00000143851	52	0	0.00	62	9	12.68	-	-	-
PTPRVP	0	genome.wustl.edu	37	1	202158370	202158370	+	RNA	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	202158370	202158370	C	G	SNP	PTPRVP	ENST00000482597	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.623	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	87	0	0.00	57	28	32.94	-	-	-
RGL3	0	genome.wustl.edu	37	19	11507967	11507967	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	19	11507967	11507967	G	A	SNP	RGL3	ENST00000393423	human	ensembl	69_37n	-1	known	missense	c.1985	p.P662L	0.113	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	61	0	0.00	60	15	20.00	-	-	-
RIN3	0	genome.wustl.edu	37	14	93107614	93107614	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	14	93107614	93107614	C	A	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	+1	known	missense	c.472	p.Q158K	1.000	pfscan_SH2	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	78	0	0.00	28	22	44.00	-	-	-
RPAP2	0	genome.wustl.edu	37	1	92789425	92789425	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	92789425	92789425	A	T	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	+1	known	missense	c.948	p.E316D	0.076	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	19	0	0.00	9	6	40.00	-	-	-
SERINC5	0	genome.wustl.edu	37	5	79439630	79439630	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	5	79439630	79439630	G	A	SNP	SERINC5	ENST00000512721	human	ensembl	69_37n	-1	novel	silent	c.1242	p.Y414	0.984	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC5	HGNC	ENSG00000164300	24	0	0.00	10	4	28.57	-	-	-
SERPINC1	0	genome.wustl.edu	37	1	173878701	173878701	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	173878701	173878701	G	C	SNP	SERPINC1	ENST00000367698	human	ensembl	69_37n	-1	known	missense	c.1142	p.S381C	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINC1	HGNC	ENSG00000117601	31	0	0.00	37	5	11.63	-	-	-
SLC25A14	0	genome.wustl.edu	37	X	129506981	129506981	+	RNA	SNP	C	C	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	X	129506981	129506981	C	A	SNP	SLC25A14	ENST00000465988	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SLC25A14	HGNC	ENSG00000102078	113	0	0.00	67	10	12.99	-	-	-
SLC34A2	0	genome.wustl.edu	37	4	25664351	25664351	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	25664351	25664351	C	T	SNP	SLC34A2	ENST00000382051	human	ensembl	69_37n	+1	known	missense	c.137	p.T46I	0.005	NULL	pfam_Na/Pi_transpt,superfamily_ABC_transptrTM_dom_typ1,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765	43	0	0.00	35	17	32.69	-	-	-
SLC35F1	0	genome.wustl.edu	37	6	118588284	118588284	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	6	118588284	118588284	G	A	SNP	SLC35F1	ENST00000360388	human	ensembl	69_37n	+1	known	missense	c.604	p.A202T	1.000	pfam_DUF914_euk	pfam_DUF914_euk,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376	130	0	0.00	110	41	27.15	-	-	-
SLC45A1	0	genome.wustl.edu	37	1	8385447	8385447	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	1	8385447	8385447	A	G	SNP	SLC45A1	ENST00000377479	human	ensembl	69_37n	+1	known	missense	c.589	p.I197V	0.725	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426	53	0	0.00	13	11	45.83	-	-	-
SPATA2	0	genome.wustl.edu	37	20	48524761	48524761	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	20	48524761	48524761	G	A	SNP	SPATA2	ENST00000289431	human	ensembl	69_37n	-1	known	silent	c.267	p.F89	0.994	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480	32	0	0.00	31	8	20.51	-	-	-
TMEM245	0	genome.wustl.edu	37	9	111849489	111849489	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	9	111849489	111849489	G	A	SNP	TMEM245	ENST00000413712	human	ensembl	69_37n	-1	novel	missense	c.85	p.R29W	0.004	NULL	pfam_UPF0118	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM245	HGNC	ENSG00000106771	36	0	0.00	11	16	59.26	-	-	-
TMEM25	0	genome.wustl.edu	37	11	118404580	118404580	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	11	118404580	118404580	C	A	SNP	TMEM25	ENST00000526853	human	ensembl	69_37n	+1	putative	missense	c.317	p.P106Q	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TMEM25	HGNC	ENSG00000149582	72	0	0.00	28	24	46.15	-	-	-
TP53	0	genome.wustl.edu	37	17	7578536	7578536	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	17	7578536	7578536	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.394	p.K132E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	33	0	0.00	20	12	37.50	-	-	-
TRIM43	0	genome.wustl.edu	37	2	96265165	96265165	+	Silent	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	96265165	96265165	C	T	SNP	TRIM43	ENST00000272395	human	ensembl	69_37n	+1	known	silent	c.1185	p.Y395	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM43	HGNC	ENSG00000144015	8	0	0.00	7	5	41.67	-	-	-
TRIM9	0	genome.wustl.edu	37	14	51561358	51561358	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	14	51561358	51561358	G	A	SNP	TRIM9	ENST00000338969	human	ensembl	69_37n	-1	known	silent	c.300	p.R100	0.191	smart_Znf_RING	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	68	0	0.00	35	16	31.37	-	-	-
VSNL1	0	genome.wustl.edu	37	2	17836578	17836578	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	17836578	17836578	C	G	SNP	VSNL1	ENST00000295156	human	ensembl	69_37n	+1	known	missense	c.493	p.Q165E	1.000	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_errors	VSNL1	HGNC	ENSG00000163032	8	0	0.00	24	5	17.24	-	-	-
WDFY3-AS2	0	genome.wustl.edu	37	4	85887858	85887858	+	RNA	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	4	85887858	85887858	A	G	SNP	WDFY3-AS2	ENST00000451762	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WDFY3-AS2	HGNC	ENSG00000180769	62	0	0.00	21	18	46.15	-	-	-
WDR44	0	genome.wustl.edu	37	X	117527021	117527021	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	X	117527021	117527021	G	A	SNP	WDR44	ENST00000254029	human	ensembl	69_37n	+1	known	missense	c.613	p.A205T	0.637	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR44	HGNC	ENSG00000131725	30	0	0.00	13	22	62.86	-	-	-
ZNF167	0	genome.wustl.edu	37	3	44612064	44612064	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	3	44612064	44612064	A	G	SNP	ZNF167	ENST00000273320	human	ensembl	69_37n	+1	known	missense	c.1462	p.T488A	0.012	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF167	HGNC	ENSG00000196345	37	0	0.00	24	11	31.43	-	-	-
ZNF239	0	genome.wustl.edu	37	10	44053585	44053585	+	RNA	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	10	44053585	44053585	C	T	SNP	ZNF239	ENST00000491188	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.654	-	-	-	no_errors	ZNF239	HGNC	ENSG00000196793	26	0	0.00	29	4	12.12	-	-	-
ZNF638	0	genome.wustl.edu	37	2	71576941	71576941	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	71576941	71576941	C	T	SNP	ZNF638	ENST00000264447	human	ensembl	69_37n	+1	known	missense	c.857	p.S286L	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292	53	0	0.00	35	4	10.26	-	-	-
ZNF804A	0	genome.wustl.edu	37	2	185800789	185800789	+	Silent	SNP	G	G	A			TCGA-A2-A4S3-01A-21D-A25Q-09	TCGA-A2-A4S3-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9f84743b-291f-4338-a7a8-0f2752236f22	d14e8c5a-fad9-4325-ac04-adaed184bd97	2	185800789	185800789	G	A	SNP	ZNF804A	ENST00000302277	human	ensembl	69_37n	+1	known	silent	c.666	p.A222	0.003	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	42	0	0.00	23	22	48.89	-	-	-
