Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AXDND1	0	genome.wustl.edu	37	1	179399655	179399655	+	Silent	SNP	A	A	G			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	1	179399655	179399655	A	G	SNP	AXDND1	ENST00000367618	human	ensembl	69_37n	+1	known	silent	c.1401	p.K467	0.938	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779	156	0	0.00	192	148	43.40	-	-	-
C9orf170	0	genome.wustl.edu	37	9	89771612	89771612	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	9	89771612	89771612	G	T	SNP	C9orf170	ENST00000375941	human	ensembl	69_37n	+1	known	missense	c.293	p.R98L	0.001	NULL	NULL	-	no_errors	C9orf170	HGNC	ENSG00000204446	211	0	0.00	26	109	80.74	-	-	-
COL1A2	0	genome.wustl.edu	37	7	94052368	94052368	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	7	94052368	94052368	G	A	SNP	COL1A2	ENST00000297268	human	ensembl	69_37n	+1	known	missense	c.2503	p.G835S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692	121	0	0.00	11	47	81.03	-	-	-
EMC2	0	genome.wustl.edu	37	8	109498777	109498777	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	8	109498777	109498777	C	G	SNP	EMC2	ENST00000220853	human	ensembl	69_37n	+1	known	missense	c.844	p.L282V	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	EMC2	HGNC	ENSG00000104412	162	1	0.61	92	15	14.02	-	-	-
FAM227B	0	genome.wustl.edu	37	15	49880251	49880251	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	15	49880251	49880251	C	T	SNP	FAM227B	ENST00000299338	human	ensembl	69_37n	-1	known	missense	c.367	p.E123K	0.002	NULL	NULL	-	no_errors	FAM227B	HGNC	ENSG00000166262	515	0	0.00	201	113	35.99	-	-	-
GANAB	0	genome.wustl.edu	37	11	62396766	62396766	+	Silent	SNP	T	T	C			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	11	62396766	62396766	T	C	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	silent	c.1902	p.G634	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	41	0	0.00	69	44	38.94	-	-	-
GJB6	0	genome.wustl.edu	37	13	20797608	20797608	+	Silent	SNP	C	C	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	13	20797608	20797608	C	A	SNP	GJB6	ENST00000241124	human	ensembl	69_37n	-1	known	silent	c.12	p.G4	0.000	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742	164	0	0.00	135	32	19.16	-	-	-
HS6ST2	0	genome.wustl.edu	37	X	131762771	131762771	+	Missense_Mutation	SNP	A	A	C			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	X	131762771	131762771	A	C	SNP	HS6ST2	ENST00000521489	human	ensembl	69_37n	-1	known	missense	c.1418	p.L473R	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	310	0	0.00	43	140	76.50	-	-	-
KCNQ2	0	genome.wustl.edu	37	20	62073861	62073861	+	Silent	SNP	G	G	T			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	20	62073861	62073861	G	T	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	silent	c.714	p.I238	0.997	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	63	0	0.00	56	39	41.05	-	-	-
LPHN2	0	genome.wustl.edu	37	1	82445611	82445611	+	Nonsense_Mutation	SNP	T	T	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	1	82445611	82445611	T	A	SNP	LPHN2	ENST00000370717	human	ensembl	69_37n	+1	known	nonsense	c.3068	p.L1023*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114	182	0	0.00	13	41	74.55	-	-	-
LRRC37A6P	0	genome.wustl.edu	37	10	27536596	27536596	+	RNA	SNP	T	T	C			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	10	27536596	27536596	T	C	SNP	LRRC37A6P	ENST00000284414	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	LRRC37A6P	HGNC	ENSG00000230445	53	0	0.00	42	26	38.24	-	-	-
MYNN	0	genome.wustl.edu	37	3	169492273	169492273	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	3	169492273	169492273	G	T	SNP	MYNN	ENST00000349841	human	ensembl	69_37n	+1	known	missense	c.190	p.D64Y	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274	108	1	0.92	56	41	41.84	-	-	-
NBEAL1	0	genome.wustl.edu	37	2	204045211	204045211	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	2	204045211	204045211	C	G	SNP	NBEAL1	ENST00000449802	human	ensembl	69_37n	+1	known	missense	c.6484	p.P2162A	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426	71	0	0.00	33	22	40.00	-	-	-
NINL	0	genome.wustl.edu	37	20	25493495	25493495	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	20	25493495	25493495	C	T	SNP	NINL	ENST00000278886	human	ensembl	69_37n	-1	known	missense	c.425	p.R142H	0.003	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NINL	HGNC	ENSG00000101004	18	0	0.00	20	5	20.00	-	-	-
PLA2G4F	0	genome.wustl.edu	37	15	42438328	42438328	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	15	42438328	42438328	C	A	SNP	PLA2G4F	ENST00000397272	human	ensembl	69_37n	-1	known	missense	c.1537	p.A513S	1.000	pfam_LysoPLipase_cat_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907	31	0	0.00	21	6	22.22	-	-	-
POLR3GL	0	genome.wustl.edu	37	1	145457308	145457308	+	Silent	SNP	C	C	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	1	145457308	145457308	C	A	SNP	POLR3GL	ENST00000369314	human	ensembl	69_37n	-1	known	silent	c.384	p.R128	1.000	pfam_RNA_pol_III_Rpc31	pfam_RNA_pol_III_Rpc31	-	no_errors	POLR3GL	HGNC	ENSG00000121851	101	0	0.00	166	43	20.57	-	-	-
PRKDC	0	genome.wustl.edu	37	8	48840380	48840380	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	8	48840380	48840380	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	69_37n	-1	known	missense	c.2210	p.P737L	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729	42	0	0.00	7	19	73.08	-	-	-
RNF128	0	genome.wustl.edu	37	X	105937248	105937248	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	X	105937248	105937248	A	G	SNP	RNF128	ENST00000324342	human	ensembl	69_37n	+1	known	missense	c.16	p.R6G	0.005	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135	313	0	0.00	35	113	76.35	-	-	-
RNF219	0	genome.wustl.edu	37	13	79190282	79190282	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	13	79190282	79190282	G	C	SNP	RNF219	ENST00000282003	human	ensembl	69_37n	-1	known	missense	c.1614	p.I538M	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	287	1	0.35	48	112	70.00	-	-	-
SLC28A2	0	genome.wustl.edu	37	15	45560544	45560544	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	15	45560544	45560544	G	A	SNP	SLC28A2	ENST00000347644	human	ensembl	69_37n	+1	known	missense	c.1336	p.E446K	0.891	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A2	HGNC	ENSG00000137860	96	0	0.00	85	71	45.51	-	-	-
TRIM60	0	genome.wustl.edu	37	4	165961589	165961589	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	4	165961589	165961589	C	A	SNP	TRIM60	ENST00000341062	human	ensembl	69_37n	+1	known	missense	c.365	p.S122Y	0.032	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	68	0	0.00	46	43	48.31	-	-	-
WBSCR16	0	genome.wustl.edu	37	7	74482534	74482534	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A099-01A-11W-A019-09	TCGA-A8-A099-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1066cb38-e051-42fa-a8bc-20b659c17a13	f683d650-e338-4347-a0a3-b7e28cb096f8	7	74482534	74482534	C	A	SNP	WBSCR16	ENST00000329959	human	ensembl	69_37n	-1	known	missense	c.526	p.V176L	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	WBSCR16	HGNC	ENSG00000174374	23	0	0.00	39	16	29.09	-	-	-
