Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARHGEF26	0	genome.wustl.edu	37	3	153840379	153840379	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	3	153840379	153840379	C	T	SNP	ARHGEF26	ENST00000356448	human	ensembl	69_37n	+1	known	missense	c.598	p.R200W	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790	13	0	0.00	26	38	59.38	-	-	-
BRPF1	0	genome.wustl.edu	37	3	9781112	9781113	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	3	9781112	9781113	AG	-	DEL	BRPF1	ENST00000383829	human	ensembl	69_37n	+1	known	frame_shift_del	c.1029_1030	p.D344fs	0.841:1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	37	0	0.00	18	6	25.00	-	-	-
BRPF1	0	genome.wustl.edu	37	3	9781112	9781113	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	3	9781112	9781113	AG	-	DEL	BRPF1	ENST00000383829	human	ensembl	69_37n	+1	known	frame_shift_del	c.1029_1030	p.D344fs	0.841:1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	37	0	0.00	15	6	28.57	-	-	-
CAPN2	0	genome.wustl.edu	37	1	223933013	223933013	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	1	223933013	223933013	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	69_37n	+1	known	nonsense	c.432	p.W144*	1.000	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,prints_Calpain_cysteine_protease,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN2	HGNC	ENSG00000162909	74	0	0.00	33	4	10.81	-	-	-
CARD8	0	genome.wustl.edu	37	19	48715046	48715046	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	48715046	48715046	A	T	SNP	CARD8	ENST00000391898	human	ensembl	69_37n	-1	known	missense	c.1535	p.L512Q	0.000	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483	72	0	0.00	74	24	24.49	-	-	-
CARD8	0	genome.wustl.edu	37	19	48715046	48715046	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	48715046	48715046	A	T	SNP	CARD8	ENST00000391898	human	ensembl	69_37n	-1	known	missense	c.1535	p.L512Q	0.000	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	-	no_errors	CARD8	HGNC	ENSG00000105483	72	0	0.00	24	14	36.84	-	-	-
CNNM2	0	genome.wustl.edu	37	10	104679434	104679434	+	Silent	SNP	C	C	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	104679434	104679434	C	T	SNP	CNNM2	ENST00000457502	human	ensembl	69_37n	+1	known	silent	c.1197	p.C399	1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	47	0	0.00	12	8	40.00	-	-	-
CNNM2	0	genome.wustl.edu	37	10	104679434	104679434	+	Silent	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	104679434	104679434	C	T	SNP	CNNM2	ENST00000457502	human	ensembl	69_37n	+1	known	silent	c.1197	p.C399	1.000	pfam_DUF21	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	47	0	0.00	12	6	33.33	-	-	-
CNTNAP3	0	genome.wustl.edu	37	9	39085796	39085796	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	9	39085796	39085796	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.3379	p.V1127I	0.994	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	87	0	0.00	31	16	34.04	-	-	-
CNTNAP3	0	genome.wustl.edu	37	9	39085796	39085796	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	9	39085796	39085796	C	T	SNP	CNTNAP3	ENST00000297668	human	ensembl	69_37n	-1	known	missense	c.3379	p.V1127I	0.994	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EGF-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	87	0	0.00	187	87	31.75	-	-	-
CSHL1	0	genome.wustl.edu	37	17	61988159	61988159	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	17	61988159	61988159	C	T	SNP	CSHL1	ENST00000309894	human	ensembl	69_37n	-1	known	missense	c.136	p.A46T	1.000	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSHL1	HGNC	ENSG00000204414	61	0	0.00	37	8	17.78	-	-	-
CSHL1	0	genome.wustl.edu	37	17	61988159	61988159	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	17	61988159	61988159	C	T	SNP	CSHL1	ENST00000309894	human	ensembl	69_37n	-1	known	missense	c.136	p.A46T	1.000	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSHL1	HGNC	ENSG00000204414	61	0	0.00	45	13	22.41	-	-	-
CSRNP3	0	genome.wustl.edu	37	2	166532860	166532860	+	Silent	SNP	C	C	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	2	166532860	166532860	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	+1	known	silent	c.447	p.S149	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	17	0	0.00	7	7	50.00	-	-	-
CSRNP3	0	genome.wustl.edu	37	2	166532860	166532860	+	Silent	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	2	166532860	166532860	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	+1	known	silent	c.447	p.S149	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	17	0	0.00	20	7	25.93	-	-	-
DCST2	0	genome.wustl.edu	37	1	154996080	154996080	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	1	154996080	154996080	C	-	DEL	DCST2	ENST00000295536	human	ensembl	69_37n	-1	known	frame_shift_del	c.1887	p.W629fs	0.001	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	58	0	0.00	13	2	13.33	-	-	-
DDX26B	0	genome.wustl.edu	37	X	134680717	134680717	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	134680717	134680717	C	T	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	+1	known	missense	c.520	p.R174C	1.000	pfscan_VWF_A	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	108	0	0.00	31	47	60.26	-	-	-
DDX26B	0	genome.wustl.edu	37	X	134680717	134680717	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	134680717	134680717	C	T	SNP	DDX26B	ENST00000370752	human	ensembl	69_37n	+1	known	missense	c.520	p.R174C	1.000	pfscan_VWF_A	pfscan_VWF_A	-	no_errors	DDX26B	HGNC	ENSG00000165359	108	0	0.00	9	11	55.00	-	-	-
DDX50	0	genome.wustl.edu	37	10	70679674	70679676	+	In_Frame_Del	DEL	TAT	TAT	-			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	TAT	TAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	70679674	70679676	TAT	-	DEL	DDX50	ENST00000373585	human	ensembl	69_37n	+1	known	in_frame_del	c.1176_1178	p.I394in_frame_del	1.000:1.000:1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX50	HGNC	ENSG00000107625	58	0	0.00	28	4	12.50	-	-	-
DIAPH3	0	genome.wustl.edu	37	13	60485904	60485904	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	13	60485904	60485904	T	-	DEL	DIAPH3	ENST00000400324	human	ensembl	69_37n	-1	known	frame_shift_del	c.2332	p.S778fs	1.000	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,pfam_Drf_DAD,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	DIAPH3	HGNC	ENSG00000139734	56	0	0.00	14	2	12.50	-	-	-
DKC1	0	genome.wustl.edu	37	X	153993226	153993228	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	153993226	153993228	AGA	-	DEL	DKC1	ENST00000369550	human	ensembl	69_37n	+1	known	in_frame_del	c.69_71	p.E25in_frame_del	0.070:0.944:0.966	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	147	0	0.00	85	12	12.24	-	-	-
DKC1	0	genome.wustl.edu	37	X	153993226	153993228	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	153993226	153993228	AGA	-	DEL	DKC1	ENST00000369550	human	ensembl	69_37n	+1	known	in_frame_del	c.69_71	p.E25in_frame_del	0.070:0.944:0.966	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_Pseudouridine_synthase-related,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	147	0	0.00	78	10	11.36	-	-	-
DMXL2	0	genome.wustl.edu	37	15	51766573	51766575	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	15	51766573	51766575	ACA	-	DEL	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	in_frame_del	c.7181_7179	p.V2394in_frame_del	1.000:1.000:0.993	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	29	0	0.00	17	3	15.00	-	-	-
DMXL2	0	genome.wustl.edu	37	15	51766573	51766575	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	15	51766573	51766575	ACA	-	DEL	DMXL2	ENST00000543779	human	ensembl	69_37n	-1	known	in_frame_del	c.7181_7179	p.V2394in_frame_del	1.000:1.000:0.993	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	29	0	0.00	14	3	17.65	-	-	-
DNAH11	0	genome.wustl.edu	37	7	21745090	21745090	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	21745090	21745090	G	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	+1	known	missense	c.6502	p.E2168Q	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	46	0	0.00	65	10	13.33	-	-	-
DNAJB12	0	genome.wustl.edu	37	10	74103268	74103268	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	74103268	74103268	C	-	DEL	DNAJB12	ENST00000338820	human	ensembl	69_37n	-1	known	frame_shift_del	c.415	p.V139fs	1.000	superfamily_DnaJ_N	pfam_DUF1977_DnaJ-like,pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJB12	HGNC	ENSG00000148719	55	0	0.00	16	2	11.11	-	-	-
EXOC6	0	genome.wustl.edu	37	10	94654759	94654760	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	94654759	94654760	-	A	INS	EXOC6	ENST00000371547	human	ensembl	69_37n	+1	known	frame_shift_ins	c.442_443	p.L148fs	1.000:1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6	HGNC	ENSG00000138190	83	0	0.00	24	5	17.24	-	-	-
FAM182B	0	genome.wustl.edu	37	20	25755549	25755549	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	20	25755549	25755549	C	A	SNP	FAM182B	ENST00000376403	human	ensembl	69_37n	-1	putative	missense	c.407	p.G136V	0.159	NULL	NULL	-	no_errors	FAM182B	HGNC	ENSG00000175170	8	0	0.00	7	5	41.67	-	-	-
FAM86B2	0	genome.wustl.edu	37	8	12285132	12285132	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	8	12285132	12285132	C	G	SNP	FAM86B2	ENST00000393715	human	ensembl	69_37n	-1	known	missense	c.242	p.C81S	0.001	NULL	NULL	-	no_errors	FAM86B2	HGNC	ENSG00000145002	13	0	0.00	1	3	75.00	-	-	-
FANCM	0	genome.wustl.edu	37	14	45636186	45636187	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	14	45636186	45636187	-	T	INS	FANCM	ENST00000267430	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1822_1823	p.Y609fs	0.999:1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	38	0	0.00	18	3	14.29	-	-	-
FBXO11	0	genome.wustl.edu	37	2	48060178	48060178	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	2	48060178	48060178	A	-	DEL	FBXO11	ENST00000403359	human	ensembl	69_37n	-1	known	frame_shift_del	c.966	p.I322fs	1.000	superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like	pfam_Znf_N-recognin,pfam_F-box_dom_cyclin-like,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom_cyclin-like,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081	68	0	0.00	30	4	10.81	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40383831	40383833	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	40383831	40383833	GAT	-	DEL	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	in_frame_del	c.9779_9777	p.S3260in_frame_del	0.003:0.001:0.000	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	11	0	0.00	4	2	33.33	-	-	-
GGT5	0	genome.wustl.edu	37	22	24621545	24621545	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	22	24621545	24621545	G	A	SNP	GGT5	ENST00000425408	human	ensembl	69_37n	-1	putative	missense	c.113	p.A38V	0.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GGT5	HGNC	ENSG00000099998	32	0	0.00	19	13	39.39	-	-	-
GGT5	0	genome.wustl.edu	37	22	24621545	24621545	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	22	24621545	24621545	G	A	SNP	GGT5	ENST00000425408	human	ensembl	69_37n	-1	putative	missense	c.113	p.A38V	0.000	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GGT5	HGNC	ENSG00000099998	32	0	0.00	7	19	73.08	-	-	-
GOLGA6L6	0	genome.wustl.edu	37	15	20740537	20740538	+	In_Frame_Ins	INS	-	-	CTC			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	15	20740537	20740538	-	CTC	INS	GOLGA6L6	ENST00000427390	human	ensembl	69_37n	-1	known	in_frame_ins	c.1213_1212	p.404in_frame_insE	0.717:0.736	NULL	superfamily_Ribosomal_L7/12_C/ClpS-like,prints_Tropomyosin	-	no_errors	GOLGA6L6	HGNC	ENSG00000215405	11	0	0.00	4	7	63.64	-	-	-
HDAC9	0	genome.wustl.edu	37	7	18706135	18706136	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	18706135	18706136	TA	-	DEL	HDAC9	ENST00000405010	human	ensembl	69_37n	+1	known	frame_shift_del	c.1758_1759	p.K587fs	1.000:1.000	NULL	pfam_Hist_deacetylase_Gln_rich_N	-	no_errors	HDAC9	HGNC	ENSG00000048052	29	0	0.00	7	2	18.18	-	-	-
HECW1	0	genome.wustl.edu	37	7	43436434	43436434	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	43436434	43436434	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	+1	known	missense	c.577	p.D193N	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	83	0	0.00	71	12	14.29	-	-	-
HECW1	0	genome.wustl.edu	37	7	43436434	43436434	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	43436434	43436434	G	A	SNP	HECW1	ENST00000395891	human	ensembl	69_37n	+1	known	missense	c.577	p.D193N	1.000	NULL	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	83	0	0.00	77	13	14.44	-	-	-
HSP90B1	0	genome.wustl.edu	37	12	104332121	104332121	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	104332121	104332121	G	T	SNP	HSP90B1	ENST00000299767	human	ensembl	69_37n	+1	known	nonsense	c.859	p.E287*	0.987	pirsf_Hsp90,pfam_Hsp90,superfamily_ATPase-like_ATP-bd	pirsf_Hsp90,pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90B1	HGNC	ENSG00000166598	50	0	0.00	16	4	20.00	-	-	-
ITGAM	0	genome.wustl.edu	37	16	31332921	31332922	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	16	31332921	31332922	-	C	INS	ITGAM	ENST00000544665	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1978_1979	p.K660fs	0.144:0.148	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896	53	0	0.00	17	2	10.53	-	-	-
JMJD1C	0	genome.wustl.edu	37	10	64957271	64957271	+	Missense_Mutation	SNP	T	T	G			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	64957271	64957271	T	G	SNP	JMJD1C	ENST00000327520	human	ensembl	69_37n	-1	novel	missense	c.1184	p.H395P	0.897	NULL	pfscan_JmjC_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	JMJD1C	HGNC	ENSG00000171988	63	0	0.00	48	11	18.64	-	-	-
JMJD1C	0	genome.wustl.edu	37	10	64957271	64957271	+	Missense_Mutation	SNP	T	T	G			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	10	64957271	64957271	T	G	SNP	JMJD1C	ENST00000327520	human	ensembl	69_37n	-1	novel	missense	c.1184	p.H395P	0.897	NULL	pfscan_JmjC_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	JMJD1C	HGNC	ENSG00000171988	63	0	0.00	42	17	28.33	-	-	-
KIF15	0	genome.wustl.edu	37	3	44867604	44867605	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	3	44867604	44867605	-	T	INS	KIF15	ENST00000326047	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2623_2624	p.K875fs	1.000:1.000	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	40	0	0.00	26	5	16.13	-	-	-
KIF16B	0	genome.wustl.edu	37	20	16506751	16506751	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	20	16506751	16506751	C	T	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.217	p.V73I	0.989	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	46	0	0.00	35	4	10.26	-	-	-
LETM2	0	genome.wustl.edu	37	8	38260043	38260044	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	8	38260043	38260044	-	G	INS	LETM2	ENST00000379957	human	ensembl	69_37n	+1	known	frame_shift_ins	c.985_986	p.I329fs	0.888:0.979	pfam_LETM1	pfam_LETM1	-	no_errors	LETM2	HGNC	ENSG00000165046	39	0	0.00	23	3	11.54	-	-	-
LIMK2	0	genome.wustl.edu	37	22	31655161	31655161	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	22	31655161	31655161	G	A	SNP	LIMK2	ENST00000331728	human	ensembl	69_37n	+1	known	missense	c.307	p.V103M	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541	109	0	0.00	33	14	29.79	-	-	-
LIMK2	0	genome.wustl.edu	37	22	31655161	31655161	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	22	31655161	31655161	G	A	SNP	LIMK2	ENST00000331728	human	ensembl	69_37n	+1	known	missense	c.307	p.V103M	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	LIMK2	HGNC	ENSG00000182541	109	0	0.00	23	13	36.11	-	-	-
LMTK2	0	genome.wustl.edu	37	7	97833398	97833398	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	97833398	97833398	C	G	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	+1	known	missense	c.4383	p.S1461R	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	52	0	0.00	42	13	23.64	-	-	-
LMTK2	0	genome.wustl.edu	37	7	97833398	97833398	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	97833398	97833398	C	G	SNP	LMTK2	ENST00000297293	human	ensembl	69_37n	+1	known	missense	c.4383	p.S1461R	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715	52	0	0.00	28	10	26.32	-	-	-
MUC12	0	genome.wustl.edu	37	7	100639154	100639155	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	100639154	100639155	-	C	INS	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5739_5740	p.A1913fs	0.000:0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	20	0	0.00	9	3	25.00	-	-	-
MUC12	0	genome.wustl.edu	37	7	100645406	100645407	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	100645406	100645407	TA	-	DEL	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	frame_shift_del	c.11991_11992	p.T3998fs	0.001:0.000	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	8	0	0.00	4	2	33.33	-	-	-
MUC12	0	genome.wustl.edu	37	7	100647332	100647333	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	100647332	100647333	-	A	INS	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	frame_shift_ins	c.13917_13918	p.Q4639fs	0.426:0.340	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	49	0	0.00	41	5	10.87	-	-	-
MUC4	0	genome.wustl.edu	37	3	195506482	195506482	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	3	195506482	195506482	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11969	p.T3990N	0.003	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	27	0	0.00	34	18	33.33	-	-	-
MYO3B	0	genome.wustl.edu	37	2	171376010	171376010	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	2	171376010	171376010	C	G	SNP	MYO3B	ENST00000334231	human	ensembl	69_37n	+1	known	missense	c.3562	p.Q1188E	0.020	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909	26	0	0.00	17	7	29.17	-	-	-
NAA35	0	genome.wustl.edu	37	9	88592347	88592347	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	9	88592347	88592347	T	-	DEL	NAA35	ENST00000361671	human	ensembl	69_37n	+1	known	frame_shift_del	c.748	p.F250fs	1.000	NULL	pfam_NatC_AcTrfase_Mak10	-	no_errors	NAA35	HGNC	ENSG00000135040	100	0	0.00	17	2	10.53	-	-	-
NEK1	0	genome.wustl.edu	37	4	170359332	170359333	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	4	170359332	170359333	-	AA	INS	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2666_2665	p.N889fs	0.233:0.323	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	143	0	0.00	18	2	10.00	-	-	-
NPC1	0	genome.wustl.edu	37	18	21119843	21119843	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	18	21119843	21119843	G	A	SNP	NPC1	ENST00000591051	human	ensembl	69_37n	-1	putative	missense	c.1805	p.A602V	1.000	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NPC1	HGNC	ENSG00000141458	47	0	0.00	14	7	33.33	-	-	-
NPC1	0	genome.wustl.edu	37	18	21119843	21119843	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	18	21119843	21119843	G	A	SNP	NPC1	ENST00000591051	human	ensembl	69_37n	-1	putative	missense	c.1805	p.A602V	1.000	tigrfam_NP_C_type	pfam_Patched,pfam_MMPL-typ,pfscan_SSD,tigrfam_NP_C_type	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NPC1	HGNC	ENSG00000141458	47	0	0.00	23	10	30.30	-	-	-
NR1H2	0	genome.wustl.edu	37	19	50881804	50881806	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	50881804	50881806	GAA	-	DEL	NR1H2	ENST00000253727	human	ensembl	69_37n	+1	known	in_frame_del	c.498_500	p.K169in_frame_del	0.985:0.996:0.998	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	-	no_errors	NR1H2	HGNC	ENSG00000131408	28	0	0.00	16	4	20.00	-	-	-
NTNG2	0	genome.wustl.edu	37	9	135116302	135116302	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	9	135116302	135116302	A	-	DEL	NTNG2	ENST00000360670	human	ensembl	69_37n	+1	known	frame_shift_del	c.1246	p.N416fs	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358	33	0	0.00	7	2	22.22	-	-	-
OASL	0	genome.wustl.edu	37	12	121458630	121458631	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	121458630	121458631	-	C	INS	OASL	ENST00000257570	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1279_1278	p.L426fs	0.985:0.975	smart_Ubiquitin	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114	37	0	0.00	10	2	16.67	-	-	-
OR4C6	0	genome.wustl.edu	37	11	55432931	55432932	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	11	55432931	55432932	-	T	INS	OR4C6	ENST00000314259	human	ensembl	69_37n	+1	known	frame_shift_ins	c.289_290	p.T97fs	0.004:0.018	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903	88	0	0.00	15	2	11.76	-	-	-
POTEG	0	genome.wustl.edu	37	14	19574243	19574243	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	14	19574243	19574243	C	A	SNP	POTEG	ENST00000409832	human	ensembl	69_37n	+1	known	missense	c.1300	p.P434T	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEG	HGNC	ENSG00000222036	31	0	0.00	0	4	100.00	-	-	-
PPFIBP1	0	genome.wustl.edu	37	12	27841969	27841969	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	27841969	27841969	G	A	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	+1	known	missense	c.2536	p.V846I	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	39	0	0.00	24	15	38.46	-	-	-
PPFIBP1	0	genome.wustl.edu	37	12	27841969	27841969	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	27841969	27841969	G	A	SNP	PPFIBP1	ENST00000318304	human	ensembl	69_37n	+1	known	missense	c.2536	p.V846I	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	39	0	0.00	28	26	48.15	-	-	-
RAD50	0	genome.wustl.edu	37	5	131911476	131911478	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	5	131911476	131911478	AAG	-	DEL	RAD50	ENST00000265335	human	ensembl	69_37n	+1	known	in_frame_del	c.221_223	p.E75in_frame_del	1.000:0.954:1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	66	0	0.00	25	15	37.50	-	-	-
RAD50	0	genome.wustl.edu	37	5	131911476	131911478	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	5	131911476	131911478	AAG	-	DEL	RAD50	ENST00000265335	human	ensembl	69_37n	+1	known	in_frame_del	c.221_223	p.E75in_frame_del	1.000:0.954:1.000	tigrfam_Rad50	pfam_Rad50_Zn_hook,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50	-	no_errors	RAD50	HGNC	ENSG00000113522	66	0	0.00	21	15	41.67	-	-	-
RALGAPB	0	genome.wustl.edu	37	20	37195849	37195852	+	Frame_Shift_Del	DEL	ACAG	ACAG	-			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	ACAG	ACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	20	37195849	37195852	ACAG	-	DEL	RALGAPB	ENST00000262879	human	ensembl	69_37n	+1	known	frame_shift_del	c.3928_3931	p.D1311fs	1.000:1.000:0.998:1.000	pfscan_Rap_GAP	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	47	0	0.00	45	16	26.23	-	-	-
RALGAPB	0	genome.wustl.edu	37	20	37195849	37195852	+	Frame_Shift_Del	DEL	ACAG	ACAG	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	ACAG	ACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	20	37195849	37195852	ACAG	-	DEL	RALGAPB	ENST00000262879	human	ensembl	69_37n	+1	known	frame_shift_del	c.3928_3931	p.D1311fs	1.000:1.000:0.998:1.000	pfscan_Rap_GAP	superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPB	HGNC	ENSG00000170471	47	0	0.00	49	39	44.32	-	-	-
RFX1	0	genome.wustl.edu	37	19	14074007	14074009	+	In_Frame_Del	DEL	TCG	TCG	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	TCG	TCG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	14074007	14074009	TCG	-	DEL	RFX1	ENST00000254325	human	ensembl	69_37n	-1	known	in_frame_del	c.2651_2649	p.D883in_frame_del	1.000:1.000:0.991	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX1	HGNC	ENSG00000132005	39	0	0.00	11	9	45.00	-	-	-
RNASE11	0	genome.wustl.edu	37	14	21052053	21052053	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	14	21052053	21052053	A	G	SNP	RNASE11	ENST00000335950	human	ensembl	69_37n	-1	known	missense	c.581	p.V194A	0.997	superfamily_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain	-	no_errors	RNASE11	HGNC	ENSG00000173464	26	0	0.00	21	12	36.36	-	-	-
RPGR	0	genome.wustl.edu	37	X	38145271	38145272	+	In_Frame_Ins	INS	-	-	CCC			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	38145271	38145272	-	CCC	INS	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_ins	c.2981_2980	p.994in_frame_insG	0.060:0.135	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	32	0	0.00	21	4	16.00	-	-	-
RPGR	0	genome.wustl.edu	37	X	38145287	38145289	+	In_Frame_Del	DEL	CCC	CCC	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	X	38145287	38145289	CCC	-	DEL	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_del	c.2965_2963	p.G988in_frame_del	0.144:0.016:0.007	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	22	0	0.00	8	4	30.77	-	-	-
SERPINE1	0	genome.wustl.edu	37	7	100773701	100773701	+	Splice_Site	SNP	G	G	C			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	100773701	100773701	G	C	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	+1	known	splice_site	c.272-1	e2-1	1.000	-	-	-	no_errors	SERPINE1	HGNC	ENSG00000106366	33	0	0.00	2	10	83.33	-	-	-
SERPINE1	0	genome.wustl.edu	37	7	100773701	100773701	+	Splice_Site	SNP	G	G	C			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	100773701	100773701	G	C	SNP	SERPINE1	ENST00000223095	human	ensembl	69_37n	+1	known	splice_site	c.272-1	e2-1	1.000	-	-	-	no_errors	SERPINE1	HGNC	ENSG00000106366	33	0	0.00	22	6	21.43	-	-	-
SERPINI1	0	genome.wustl.edu	37	3	167510536	167510537	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	3	167510536	167510537	-	T	INS	SERPINI1	ENST00000295777	human	ensembl	69_37n	+1	known	frame_shift_ins	c.640_641	p.P215fs	1.000:1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINI1	HGNC	ENSG00000163536	58	0	0.00	31	4	11.43	-	-	-
STRAP	0	genome.wustl.edu	37	12	16050834	16050834	+	Silent	SNP	C	C	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	16050834	16050834	C	A	SNP	STRAP	ENST00000025399	human	ensembl	69_37n	+1	known	silent	c.696	p.S232	0.380	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734	36	0	0.00	26	23	46.94	-	-	-
STRAP	0	genome.wustl.edu	37	12	16050834	16050834	+	Silent	SNP	C	C	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	16050834	16050834	C	A	SNP	STRAP	ENST00000025399	human	ensembl	69_37n	+1	known	silent	c.696	p.S232	0.380	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRAP	HGNC	ENSG00000023734	36	0	0.00	70	61	46.56	-	-	-
STUB1	0	genome.wustl.edu	37	16	730615	730615	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	16	730615	730615	G	-	DEL	STUB1	ENST00000219548	human	ensembl	69_37n	+1	known	frame_shift_del	c.90	p.E31fs	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ubox_domain,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ubox_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STUB1	HGNC	ENSG00000103266	8	0	0.00	4	2	33.33	-	-	-
TECPR2	0	genome.wustl.edu	37	14	102881035	102881035	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	14	102881035	102881035	C	-	DEL	TECPR2	ENST00000359520	human	ensembl	69_37n	+1	known	frame_shift_del	c.543	p.Q182fs	1.000	superfamily_WD40_repeat_dom	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663	60	0	0.00	17	2	10.53	-	-	-
TP53	0	genome.wustl.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	17	7577097	7577097	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.841	p.D281Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	76	0	0.00	4	63	94.03	-	-	-
TP53	0	genome.wustl.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	17	7577097	7577097	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.841	p.D281Y	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	76	0	0.00	4	29	87.88	-	-	-
TTC38	0	genome.wustl.edu	37	22	46668253	46668254	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	22	46668253	46668254	-	C	INS	TTC38	ENST00000445282	human	ensembl	69_37n	+1	known	frame_shift_ins	c.133_134	p.K45fs	0.995:0.997	NULL	NULL	-	no_errors	TTC38	HGNC	ENSG00000075234	51	0	0.00	16	2	11.11	-	-	-
TTC7B	0	genome.wustl.edu	37	14	91007744	91007744	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	14	91007744	91007744	C	T	SNP	TTC7B	ENST00000357056	human	ensembl	69_37n	-1	known	missense	c.2551	p.V851M	0.996	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	28	0	0.00	1	12	92.31	-	-	-
TYRP1	0	genome.wustl.edu	37	9	12702411	12702414	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	9	12702411	12702414	ACAA	-	DEL	TYRP1	ENST00000388918	human	ensembl	69_37n	+1	known	frame_shift_del	c.1054_1057	p.N353fs	1.000:1.000:0.997:0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165	56	0	0.00	45	8	15.09	-	-	-
YAE1D1	0	genome.wustl.edu	37	7	39612285	39612286	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	7	39612285	39612286	-	T	INS	YAE1D1	ENST00000223273	human	ensembl	69_37n	+1	known	frame_shift_ins	c.661_662	p.Q221fs	0.976:0.989	NULL	pfam_Essential_protein_Yae1_N	-	no_errors	YAE1D1	HGNC	ENSG00000241127	26	0	0.00	20	4	16.67	-	-	-
ZCCHC8	0	genome.wustl.edu	37	12	122966110	122966110	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QH-01A-11D-A18P-09	TCGA-AC-A2QH-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9fb918c-400f-4dbd-b5ec-30f716588172	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	12	122966110	122966110	G	T	SNP	ZCCHC8	ENST00000336229	human	ensembl	69_37n	-1	known	missense	c.977	p.A326D	1.000	pfam_PSP,smart_PSP	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	52	0	0.00	36	4	10.00	-	-	-
ZNF318	0	genome.wustl.edu	37	6	43316360	43316361	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	6	43316360	43316361	-	A	INS	ZNF318	ENST00000361428	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2774_2773	p.E925fs	1.000:1.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467	59	0	0.00	55	7	11.29	-	-	-
ZNF702P	0	genome.wustl.edu	37	19	53489895	53489896	+	RNA	INS	-	-	G			TCGA-AC-A2QH-01B-04D-A22N-09	TCGA-AC-A2QH-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c738b558-9cc9-4756-bbe6-c8498008d6ad	5ecdd8b2-4577-471e-809e-c7d1f88bffcd	19	53489895	53489896	-	G	INS	ZNF702P	ENST00000270443	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.456:0.462	-	-	-	no_errors	ZNF702P	HGNC	ENSG00000242779	11	0	0.00	4	2	33.33	-	-	-
