Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
A2MP1	0	genome.wustl.edu	37	12	9413853	9413853	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	9413853	9413853	T	C	SNP	A2MP1	ENST00000544183	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	A2MP1	HGNC	ENSG00000256069	32	0	0.00	39	8	17.02	-	-	-
A2MP1	0	genome.wustl.edu	37	12	9413867	9413867	+	RNA	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	9413867	9413867	A	G	SNP	A2MP1	ENST00000544183	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	A2MP1	HGNC	ENSG00000256069	29	0	0.00	39	9	18.75	-	-	-
AACSP1	0	genome.wustl.edu	37	5	178199558	178199558	+	RNA	SNP	C	C	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	5	178199558	178199558	C	G	SNP	AACSP1	ENST00000503486	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AACSP1	HGNC	ENSG00000250420	33	0	0.00	41	7	14.58	-	-	-
ACE	0	genome.wustl.edu	37	17	61584720	61584720	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	61584720	61584720	A	T	SNP	ACE	ENST00000490216	human	ensembl	69_37n	+1	known	missense	c.2145	p.K715N	0.000	NULL	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	48	0	0.00	43	9	17.31	-	-	-
AGAP1	0	genome.wustl.edu	37	2	236761396	236761396	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	236761396	236761396	C	T	SNP	AGAP1	ENST00000409457	human	ensembl	69_37n	+1	novel	missense	c.1117	p.R373C	0.903	NULL	pfam_MIRO-like,pfam_Small_GTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	35	0	0.00	36	4	10.00	-	-	-
AKAP3	0	genome.wustl.edu	37	12	4758188	4758188	+	RNA	SNP	G	G	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	4758188	4758188	G	C	SNP	AKAP3	ENST00000541484	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AKAP3	HGNC	ENSG00000111254	27	0	0.00	39	5	11.36	-	-	-
ANAPC1	0	genome.wustl.edu	37	2	112552427	112552427	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	112552427	112552427	C	T	SNP	ANAPC1	ENST00000427997	human	ensembl	69_37n	-1	novel	missense	c.2944	p.V982M	0.951	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANAPC1	HGNC	ENSG00000153107	32	0	0.00	32	5	13.51	-	-	-
ANKRD61	0	genome.wustl.edu	37	7	6071115	6071115	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	6071115	6071115	A	G	SNP	ANKRD61	ENST00000409061	human	ensembl	69_37n	+1	novel	missense	c.109	p.M37V	0.482	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD61	HGNC	ENSG00000157999	31	0	0.00	24	4	14.29	-	-	-
ANTXRL	0	genome.wustl.edu	37	10	47669277	47669277	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	47669277	47669277	C	G	SNP	ANTXRL	ENST00000537271	human	ensembl	69_37n	+1	known	missense	c.775	p.P259A	0.000	pfam_Anthrax_toxin_rcpt_extracel	pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXRL	HGNC	ENSG00000198250	36	0	0.00	35	4	10.26	-	-	-
AOX2P	0	genome.wustl.edu	37	2	201610584	201610584	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	201610584	201610584	T	C	SNP	AOX2P	ENST00000472376	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AOX2P	HGNC	ENSG00000243478	26	0	0.00	23	5	17.86	-	-	-
ARMCX4	0	genome.wustl.edu	37	X	100743826	100743826	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	X	100743826	100743826	A	G	SNP	ARMCX4	ENST00000433011	human	ensembl	69_37n	+1	known	missense	c.562	p.R188G	0.002	NULL	NULL	-	no_errors	ARMCX4	HGNC	ENSG00000196440	22	0	0.00	21	4	16.00	-	-	-
AXDND1	0	genome.wustl.edu	37	1	179504026	179504028	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	179504026	179504028	AAG	-	DEL	AXDND1	ENST00000367618	human	ensembl	69_37n	+1	known	in_frame_del	c.2960_2962	p.E991in_frame_del	0.004:0.002:0.015	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779	30	0	0.00	33	5	13.16	-	-	-
C10orf112	0	genome.wustl.edu	37	10	19676553	19676553	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	19676553	19676553	A	G	SNP	C10orf112	ENST00000454679	human	ensembl	69_37n	+1	known	missense	c.2426	p.D809G	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_MAM_dom	-	no_errors	C10orf112	HGNC	ENSG00000204740	58	0	0.00	51	7	12.07	-	-	-
C10orf112	0	genome.wustl.edu	37	10	19676561	19676561	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	19676561	19676561	G	A	SNP	C10orf112	ENST00000454679	human	ensembl	69_37n	+1	known	missense	c.2434	p.E812K	0.978	superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_MAM_dom	-	no_errors	C10orf112	HGNC	ENSG00000204740	61	0	0.00	50	7	12.07	-	-	-
C10orf112	0	genome.wustl.edu	37	10	19778056	19778056	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	19778056	19778056	G	A	SNP	C10orf112	ENST00000377265	human	ensembl	69_37n	+1	novel	missense	c.34	p.G12R	0.007	NULL	pfam_MAM_dom,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_MAM_dom,smart_EGF-like,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,prints_MAM_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	C10orf112	HGNC	ENSG00000204740	23	0	0.00	25	5	16.67	-	-	-
C1orf167	0	genome.wustl.edu	37	1	11832289	11832289	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	11832289	11832289	C	A	SNP	C1orf167	ENST00000433342	human	ensembl	69_37n	+1	known	missense	c.2033	p.P678H	0.000	NULL	NULL	-	no_errors	C1orf167	HGNC	ENSG00000215910	23	0	0.00	25	6	19.35	-	-	-
C2orf43	0	genome.wustl.edu	37	2	20885321	20885321	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	20885321	20885321	C	A	SNP	C2orf43	ENST00000403006	human	ensembl	69_37n	-1	putative	missense	c.681	p.L227F	0.234	NULL	pfam_DUF2305	-	no_errors	C2orf43	HGNC	ENSG00000118961	30	0	0.00	56	8	12.50	-	-	-
CCDC108	0	genome.wustl.edu	37	2	219892233	219892233	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	219892233	219892233	T	A	SNP	CCDC108	ENST00000409865	human	ensembl	69_37n	-1	putative	missense	c.2317	p.T773S	0.000	NULL	superfamily_PapD-like	-	no_errors	CCDC108	HGNC	ENSG00000181378	26	0	0.00	48	6	11.11	-	-	-
CCDC40	0	genome.wustl.edu	37	17	78063957	78063957	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78063957	78063957	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	+1	known	missense	c.2852	p.Q951R	0.005	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	25	0	0.00	43	8	15.69	-	-	-
CCDC40	0	genome.wustl.edu	37	17	78063964	78063964	+	Silent	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78063964	78063964	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	+1	known	silent	c.2859	p.A953	0.003	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	25	0	0.00	40	6	12.77	-	-	-
CCDC40	0	genome.wustl.edu	37	17	78063966	78063966	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78063966	78063966	A	G	SNP	CCDC40	ENST00000374877	human	ensembl	69_37n	+1	known	missense	c.2861	p.H954R	0.005	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	25	0	0.00	42	6	12.50	-	-	-
CHFR	0	genome.wustl.edu	37	12	133417908	133417908	+	RNA	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	133417908	133417908	C	T	SNP	CHFR	ENST00000544093	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CHFR	HGNC	ENSG00000072609	16	0	0.00	8	4	30.77	-	-	-
CSPG4P5	0	genome.wustl.edu	37	15	84954258	84954258	+	RNA	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	15	84954258	84954258	A	G	SNP	CSPG4P5	ENST00000456932	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CSPG4P5	HGNC	ENSG00000235370	64	0	0.00	60	7	10.45	-	-	-
CYBRD1	0	genome.wustl.edu	37	2	172379781	172379781	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	172379781	172379781	G	A	SNP	CYBRD1	ENST00000445146	human	ensembl	69_37n	+1	putative	missense	c.35	p.R12Q	0.000	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_stop_codon:bad_bp_length_for_coding_region	CYBRD1	HGNC	ENSG00000071967	70	0	0.00	59	9	13.24	-	-	-
DHRS4	0	genome.wustl.edu	37	14	24436602	24436602	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	14	24436602	24436602	C	A	SNP	DHRS4	ENST00000559975	human	ensembl	69_37n	+1	putative	missense	c.119	p.P40Q	0.010	NULL	NULL	-	no_start_codon	DHRS4	HGNC	ENSG00000157326	14	0	0.00	15	6	28.57	-	-	-
DKFZP686I15217	0	genome.wustl.edu	37	6	2990894	2990894	+	RNA	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	2990894	2990894	G	T	SNP	DKFZP686I15217	ENST00000445000	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.013	-	-	-	no_errors	RP1-90J20.7	Clone_based_vega_gene	ENSG00000244041	23	0	0.00	22	5	18.52	-	-	-
DNAJC11	0	genome.wustl.edu	37	1	6694980	6694980	+	RNA	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	6694980	6694980	G	A	SNP	DNAJC11	ENST00000465508	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DNAJC11	HGNC	ENSG00000007923	27	0	0.00	18	4	18.18	-	-	-
EFCAB8	0	genome.wustl.edu	37	20	31486206	31486206	+	RNA	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	20	31486206	31486206	A	G	SNP	EFCAB8	ENST00000533479	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EFCAB8	HGNC	ENSG00000215529	21	0	0.00	23	4	14.29	-	-	-
ERGIC1	0	genome.wustl.edu	37	5	172347440	172347440	+	RNA	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	5	172347440	172347440	G	A	SNP	ERGIC1	ENST00000523650	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ERGIC1	HGNC	ENSG00000113719	31	0	0.00	43	6	12.24	-	-	-
FAAH2	0	genome.wustl.edu	37	X	57515439	57515439	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	X	57515439	57515439	T	C	SNP	FAAH2	ENST00000491179	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAAH2	HGNC	ENSG00000165591	17	0	0.00	29	6	17.14	-	-	-
FAM188B2	0	genome.wustl.edu	37	3	150608785	150608785	+	Silent	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	150608785	150608785	G	A	SNP	FAM188B2	ENST00000397891	human	ensembl	69_37n	-1	known	silent	c.315	p.V105	0.732	NULL	NULL	-	no_errors	FAM188B2	HGNC	ENSG00000214237	27	0	0.00	23	5	17.86	-	-	-
FAM86C2P	0	genome.wustl.edu	37	11	67564162	67564162	+	RNA	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	11	67564162	67564162	A	G	SNP	FAM86C2P	ENST00000525180	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM86C2P	HGNC	ENSG00000160172	79	0	0.00	88	11	11.11	-	-	-
FAM92A1P2	0	genome.wustl.edu	37	4	183959226	183959226	+	RNA	SNP	T	T	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	4	183959226	183959226	T	G	SNP	FAM92A1P2	ENST00000502308	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.985	-	-	-	no_errors	FAM92A1P2	HGNC	ENSG00000230219	19	0	0.00	22	4	15.38	-	-	-
FAM92A1P2	0	genome.wustl.edu	37	4	183959891	183959891	+	RNA	SNP	A	A	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	4	183959891	183959891	A	T	SNP	FAM92A1P2	ENST00000502308	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	FAM92A1P2	HGNC	ENSG00000230219	28	0	0.00	23	4	14.29	-	-	-
FANCD2	0	genome.wustl.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	10108898	10108898	A	G	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	+1	known	silent	c.2391	p.V797	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	20	0	0.00	23	4	14.81	-	-	-
FANCD2	0	genome.wustl.edu	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	10108913	10108913	G	T	SNP	FANCD2	ENST00000287647	human	ensembl	69_37n	+1	known	missense	c.2406	p.Q802H	0.852	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554	23	0	0.00	24	4	14.29	-	-	-
FCRLB	0	genome.wustl.edu	37	1	161696088	161696088	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	161696088	161696088	T	C	SNP	FCRLB	ENST00000495397	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRLB	HGNC	ENSG00000162746	23	0	0.00	24	4	14.29	-	-	-
FLJ38723	0	genome.wustl.edu	37	15	62538092	62538092	+	RNA	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	15	62538092	62538092	G	T	SNP	FLJ38723	ENST00000570077	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	RP11-299H22.3	Clone_based_vega_gene	ENSG00000166104	66	0	0.00	54	6	10.00	-	-	-
FLJ42102	0	genome.wustl.edu	37	11	71118788	71118788	+	RNA	SNP	C	C	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	11	71118788	71118788	C	A	SNP	FLJ42102	ENST00000331301	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	AP002387.1	Clone_based_vega_gene	ENSG00000172900	21	0	0.00	24	7	22.58	-	-	-
FRMPD2	0	genome.wustl.edu	37	10	49389016	49389016	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	49389016	49389016	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	69_37n	-1	known	missense	c.2620	p.S874G	0.017	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324	61	0	0.00	31	6	16.22	-	-	-
GAS2L3	0	genome.wustl.edu	37	12	100994239	100994239	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	100994239	100994239	G	T	SNP	GAS2L3	ENST00000266754	human	ensembl	69_37n	+1	known	missense	c.98	p.C33F	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354	36	0	0.00	35	4	10.26	-	-	-
GDPD4	0	genome.wustl.edu	37	11	76928025	76928025	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	11	76928025	76928025	A	G	SNP	GDPD4	ENST00000376217	human	ensembl	69_37n	-1	known	missense	c.1829	p.V610A	0.000	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD4	HGNC	ENSG00000178795	65	0	0.00	76	10	11.63	-	-	-
GNN	0	genome.wustl.edu	37	12	104260287	104260287	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	104260287	104260287	T	C	SNP	GNN	ENST00000548527	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-642P15.1	Clone_based_vega_gene	ENSG00000214198	32	0	0.00	35	4	10.26	-	-	-
GPATCH4	0	genome.wustl.edu	37	1	156567712	156567712	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	156567712	156567712	C	T	SNP	GPATCH4	ENST00000474904	human	ensembl	69_37n	-1	known	nonsense	c.336	p.W112*	0.003	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH4	HGNC	ENSG00000160818	31	0	0.00	32	4	11.11	-	-	-
GPR111	0	genome.wustl.edu	37	6	47624299	47624299	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	47624299	47624299	A	G	SNP	GPR111	ENST00000296862	human	ensembl	69_37n	+1	known	missense	c.77	p.H26R	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR111	HGNC	ENSG00000164393	35	0	0.00	43	5	10.42	-	-	-
GPR55	0	genome.wustl.edu	37	2	231775277	231775277	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	231775277	231775277	G	T	SNP	GPR55	ENST00000392039	human	ensembl	69_37n	-1	known	missense	c.401	p.S134Y	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR55	HGNC	ENSG00000135898	38	0	0.00	32	4	11.11	-	-	-
GRIN3A	0	genome.wustl.edu	37	9	104375789	104375789	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	9	104375789	104375789	G	T	SNP	GRIN3A	ENST00000361820	human	ensembl	69_37n	-1	known	missense	c.2635	p.P879T	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785	42	0	0.00	34	4	10.53	-	-	-
HILPDA	0	genome.wustl.edu	37	7	128096678	128096678	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	128096678	128096678	T	C	SNP	HILPDA	ENST00000466473	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.157	-	-	-	no_errors	HILPDA	HGNC	ENSG00000135245	43	0	0.00	58	8	12.12	-	-	-
HLA-F-AS1	0	genome.wustl.edu	37	6	29713465	29713465	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	29713465	29713465	T	C	SNP	HLA-F-AS1	ENST00000458236	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HLA-F-AS1	HGNC	ENSG00000214922	23	0	0.00	29	5	14.71	-	-	-
HSD17B7	0	genome.wustl.edu	37	1	162760551	162760551	+	RNA	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	162760551	162760551	C	T	SNP	HSD17B7	ENST00000463037	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSD17B7	HGNC	ENSG00000132196	40	0	0.00	41	8	16.33	-	-	-
IQCA1P1	0	genome.wustl.edu	37	7	150893629	150893629	+	RNA	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	150893629	150893629	T	C	SNP	IQCA1P1	ENST00000453127	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.871	-	-	-	no_errors	IQCA1P1	HGNC	ENSG00000183016	40	0	0.00	53	7	11.67	-	-	-
ITGAX	0	genome.wustl.edu	37	16	31367254	31367254	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	16	31367254	31367254	G	T	SNP	ITGAX	ENST00000268296	human	ensembl	69_37n	+1	known	missense	c.78	p.E26D	0.043	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAX	HGNC	ENSG00000140678	28	0	0.00	34	4	10.53	-	-	-
IVNS1ABP	0	genome.wustl.edu	37	1	185267114	185267114	+	RNA	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	185267114	185267114	A	G	SNP	IVNS1ABP	ENST00000459929	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	57	0	0.00	74	10	11.90	-	-	-
KIAA1328	0	genome.wustl.edu	37	18	34664093	34664093	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	18	34664093	34664093	A	G	SNP	KIAA1328	ENST00000435985	human	ensembl	69_37n	+1	known	missense	c.386	p.K129R	0.998	NULL	NULL	-	no_errors	KIAA1328	HGNC	ENSG00000150477	16	0	0.00	20	5	20.00	-	-	-
KRBA1	0	genome.wustl.edu	37	7	149418856	149418856	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	149418856	149418856	C	T	SNP	KRBA1	ENST00000467333	human	ensembl	69_37n	+1	putative	missense	c.424	p.R142C	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	KRBA1	HGNC	ENSG00000133619	24	0	0.00	21	4	16.00	-	-	-
KRT8P12	0	genome.wustl.edu	37	3	160285898	160285898	+	RNA	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	160285898	160285898	C	T	SNP	KRT8P12	ENST00000468527	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT8P12	HGNC	ENSG00000229320	34	0	0.00	31	5	13.89	-	-	-
LINC00514	0	genome.wustl.edu	37	16	3050133	3050133	+	RNA	SNP	G	G	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	16	3050133	3050133	G	C	SNP	LINC00514	ENST00000572086	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00514	HGNC	ENSG00000262152	34	0	0.00	41	9	17.65	-	-	-
LINC00634	0	genome.wustl.edu	37	22	42354488	42354489	+	RNA	DEL	GA	GA	-			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	22	42354488	42354489	GA	-	DEL	LINC00634	ENST00000381348	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.088:0.090	-	-	-	no_errors	LINC00634	HGNC	ENSG00000205704	13	0	0.00	7	5	38.46	-	-	-
MARCH10	0	genome.wustl.edu	37	17	60827660	60827660	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	60827660	60827660	A	G	SNP	MARCH10	ENST00000582568	human	ensembl	69_37n	-1	putative	missense	c.395	p.V132A	0.067	NULL	NULL	-	no_start_codon	MARCH10	HGNC	ENSG00000173838	28	0	0.00	18	6	25.00	-	-	-
MGST3	0	genome.wustl.edu	37	1	165630698	165630698	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	165630698	165630698	A	G	SNP	MGST3	ENST00000367888	human	ensembl	69_37n	+1	putative	missense	c.355	p.T119A	0.136	NULL	pfam_Membr-assoc_MAPEG	-	no_errors	MGST3	HGNC	ENSG00000143198	25	0	0.00	51	9	15.00	-	-	-
MON2	0	genome.wustl.edu	37	12	62902420	62902420	+	RNA	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	62902420	62902420	C	T	SNP	MON2	ENST00000549378	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	MON2	HGNC	ENSG00000061987	34	0	0.00	31	6	16.22	-	-	-
MUC4	0	genome.wustl.edu	37	3	195492238	195492238	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	195492238	195492238	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.13701	p.S4567R	0.000	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	31	0	0.00	24	4	14.29	-	-	-
NBPF22P	0	genome.wustl.edu	37	5	85583507	85583507	+	RNA	SNP	T	T	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	5	85583507	85583507	T	G	SNP	NBPF22P	ENST00000590707	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NBPF22P	HGNC	ENSG00000205449	108	1	0.92	102	16	13.56	-	-	-
NOMO1	0	genome.wustl.edu	37	16	14988868	14988868	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	16	14988868	14988868	A	G	SNP	NOMO1	ENST00000287667	human	ensembl	69_37n	+1	known	missense	c.3458	p.E1153G	1.000	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512	60	0	0.00	48	6	11.11	-	-	-
OTOG	0	genome.wustl.edu	37	11	17631751	17631751	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	11	17631751	17631751	C	T	SNP	OTOG	ENST00000399391	human	ensembl	69_37n	+1	known	missense	c.4940	p.P1647L	0.002	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_AbfB,pfam_TIL_dom,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom	-	no_errors	OTOG	HGNC	ENSG00000188162	25	0	0.00	21	4	16.00	-	-	-
PDZK1P1	0	genome.wustl.edu	37	1	145931852	145931852	+	RNA	SNP	A	A	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	145931852	145931852	A	C	SNP	PDZK1P1	ENST00000401011	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	PDZK1P1	HGNC	ENSG00000215860	96	0	0.00	111	14	11.20	-	-	-
PIK3C2G	0	genome.wustl.edu	37	12	18435399	18435401	+	In_Frame_Del	DEL	CCC	CCC	-			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	CCC	CCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	18435399	18435401	CCC	-	DEL	PIK3C2G	ENST00000538779	human	ensembl	69_37n	+1	known	in_frame_del	c.384_386	p.P129in_frame_del	0.001:0.000:0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	36	0	0.00	50	7	12.28	-	-	-
PKD1P6	0	genome.wustl.edu	37	16	15226880	15226880	+	RNA	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	16	15226880	15226880	G	A	SNP	PKD1P6	ENST00000540075	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.274	-	-	-	no_errors	PKD1P6	HGNC	ENSG00000250251	30	0	0.00	37	5	11.90	-	-	-
PLD5	0	genome.wustl.edu	37	1	242687390	242687390	+	Silent	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	242687390	242687390	G	A	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	silent	c.189	p.H63	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	29	0	0.00	25	4	13.79	-	-	-
PLEKHA3	0	genome.wustl.edu	37	2	179367086	179367086	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	179367086	179367086	A	G	SNP	PLEKHA3	ENST00000421187	human	ensembl	69_37n	+1	putative	missense	c.226	p.R76G	0.000	NULL	NULL	-	no_start_codon	PLEKHA3	HGNC	ENSG00000116095	34	0	0.00	28	5	15.15	-	-	-
PRAMEF2	0	genome.wustl.edu	37	1	12921333	12921333	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	12921333	12921333	G	A	SNP	PRAMEF2	ENST00000240189	human	ensembl	69_37n	+1	known	missense	c.1124	p.C375Y	0.676	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952	97	0	0.00	94	11	10.48	-	-	-
PRAMEF4	0	genome.wustl.edu	37	1	12943200	12943200	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	12943200	12943200	A	G	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.16	p.W6R	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	63	0	0.00	52	7	11.86	-	-	-
PRSS51	0	genome.wustl.edu	37	8	10356187	10356187	+	RNA	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	8	10356187	10356187	C	T	SNP	PRSS51	ENST00000523024	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PRSS51	HGNC	ENSG00000253649	35	0	0.00	29	5	14.71	-	-	-
PTPRVP	0	genome.wustl.edu	37	1	202140436	202140436	+	RNA	SNP	A	A	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	202140436	202140436	A	T	SNP	PTPRVP	ENST00000482597	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	45	0	0.00	36	4	10.00	-	-	-
RNF126P1	0	genome.wustl.edu	37	17	55123297	55123297	+	RNA	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	55123297	55123297	G	A	SNP	RNF126P1	ENST00000567452	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.916	-	-	-	no_errors	RNF126P1	HGNC	ENSG00000261192	57	0	0.00	35	4	10.26	-	-	-
RNF216P1	0	genome.wustl.edu	37	7	5036758	5036758	+	RNA	SNP	A	A	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	5036758	5036758	A	C	SNP	RNF216P1	ENST00000403969	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.920	-	-	-	no_errors	RNF216P1	HGNC	ENSG00000196204	54	0	0.00	40	8	16.67	-	-	-
RPLP0P2	0	genome.wustl.edu	37	11	61405104	61405104	+	RNA	SNP	T	T	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	11	61405104	61405104	T	G	SNP	RPLP0P2	ENST00000496593	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742	51	0	0.00	58	7	10.77	-	-	-
RPTOR	0	genome.wustl.edu	37	17	78519122	78519122	+	RNA	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	78519122	78519122	C	T	SNP	RPTOR	ENST00000577161	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.215	-	-	-	no_errors	RPTOR	HGNC	ENSG00000141564	19	0	0.00	15	4	21.05	-	-	-
SMAD5-AS1	0	genome.wustl.edu	37	5	135469527	135469527	+	RNA	SNP	T	T	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	5	135469527	135469527	T	G	SNP	SMAD5-AS1	ENST00000297163	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.086	-	-	-	no_errors	SMAD5-AS1	HGNC	ENSG00000164621	107	1	0.93	121	17	12.32	-	-	-
SMYD2	0	genome.wustl.edu	37	1	214500907	214500907	+	RNA	SNP	A	A	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	214500907	214500907	A	C	SNP	SMYD2	ENST00000484459	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SMYD2	HGNC	ENSG00000143499	35	0	0.00	31	8	20.00	-	-	-
SSC5D	0	genome.wustl.edu	37	19	56029188	56029188	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	19	56029188	56029188	C	G	SNP	SSC5D	ENST00000389623	human	ensembl	69_37n	+1	known	missense	c.3545	p.T1182S	0.002	NULL	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	SSC5D	HGNC	ENSG00000179954	31	0	0.00	42	6	12.50	-	-	-
SSC5D	0	genome.wustl.edu	37	19	56029191	56029191	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	19	56029191	56029191	C	T	SNP	SSC5D	ENST00000389623	human	ensembl	69_37n	+1	known	missense	c.3548	p.T1183M	0.002	NULL	pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt	-	no_errors	SSC5D	HGNC	ENSG00000179954	29	0	0.00	47	6	11.32	-	-	-
STAT2	0	genome.wustl.edu	37	12	56742755	56742755	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	12	56742755	56742755	C	T	SNP	STAT2	ENST00000314128	human	ensembl	69_37n	-1	known	missense	c.1529	p.R510Q	0.909	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581	20	0	0.00	9	3	25.00	-	-	-
SVOPL	0	genome.wustl.edu	37	7	138279228	138279228	+	RNA	SNP	A	A	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	7	138279228	138279228	A	T	SNP	SVOPL	ENST00000463557	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SVOPL	HGNC	ENSG00000157703	34	0	0.00	33	14	29.79	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152472750	152472750	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	152472750	152472750	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.24388	p.Q8130K	1.000	pfam_Spectrin_repeat,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	28	0	0.00	28	4	12.12	-	-	-
SYS1	0	genome.wustl.edu	37	20	43996012	43996012	+	RNA	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	20	43996012	43996012	G	T	SNP	SYS1	ENST00000479779	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	SYS1	HGNC	ENSG00000204070	20	0	0.00	18	6	25.00	-	-	-
TBATA	0	genome.wustl.edu	37	10	72532037	72532037	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	72532037	72532037	C	T	SNP	TBATA	ENST00000394982	human	ensembl	69_37n	-1	known	missense	c.59	p.R20Q	0.000	NULL	NULL	-	no_start_codon	TBATA	HGNC	ENSG00000166220	50	0	0.00	51	6	10.53	-	-	-
TBC1D20	0	genome.wustl.edu	37	20	417255	417255	+	RNA	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	20	417255	417255	G	T	SNP	TBC1D20	ENST00000461188	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D20	HGNC	ENSG00000125875	31	0	0.00	27	4	12.90	-	-	-
TIMM17A	0	genome.wustl.edu	37	1	201938995	201938995	+	RNA	SNP	C	C	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	201938995	201938995	C	T	SNP	TIMM17A	ENST00000482943	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.392	-	-	-	no_errors	TIMM17A	HGNC	ENSG00000134375	43	0	0.00	49	7	12.50	-	-	-
TLK2	0	genome.wustl.edu	37	17	60663562	60663562	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	17	60663562	60663562	G	T	SNP	TLK2	ENST00000326270	human	ensembl	69_37n	+1	known	missense	c.1501	p.D501Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TLK2	HGNC	ENSG00000146872	23	0	0.00	27	4	12.90	-	-	-
TNFRSF1B	0	genome.wustl.edu	37	1	12268499	12268499	+	RNA	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	1	12268499	12268499	G	A	SNP	TNFRSF1B	ENST00000492361	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	TNFRSF1B	HGNC	ENSG00000028137	18	0	0.00	9	3	25.00	-	-	-
TPO	0	genome.wustl.edu	37	2	1544617	1544617	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	2	1544617	1544617	G	A	SNP	TPO	ENST00000422464	human	ensembl	69_37n	+1	novel	missense	c.2525	p.R842H	0.000	NULL	pfam_Haem_peroxidase_animal,pfam_Sushi_SCR_CCP,superfamily_Haem_peroxidase,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_Haem_peroxidase_animal_subgr,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal	-	no_start_codon	TPO	HGNC	ENSG00000115705	39	0	0.00	37	5	11.90	-	-	-
TSEN2	0	genome.wustl.edu	37	3	12560583	12560583	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	12560583	12560583	G	T	SNP	TSEN2	ENST00000284995	human	ensembl	69_37n	+1	known	missense	c.986	p.W329L	1.000	pfam_tRNA_intron_Endonuc_N,pirsf_tRNA_splic_SEN2	pfam_tRNA_intron_Endonuc_cat-like,pfam_tRNA_intron_Endonuc_N,superfamily_tRNA_intron_Endonuc_cat-like,pirsf_tRNA_splic_SEN2	-	no_errors	TSEN2	HGNC	ENSG00000154743	43	0	0.00	44	5	10.20	-	-	-
TTC40	0	genome.wustl.edu	37	10	134698626	134698626	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	10	134698626	134698626	T	C	SNP	TTC40	ENST00000368582	human	ensembl	69_37n	-1	known	missense	c.3608	p.N1203S	0.109	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	26	0	0.00	43	5	10.42	-	-	-
TYRO3	0	genome.wustl.edu	37	15	41865525	41865525	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	15	41865525	41865525	G	T	SNP	TYRO3	ENST00000263798	human	ensembl	69_37n	+1	known	missense	c.2005	p.V669L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TYRO3	HGNC	ENSG00000092445	25	0	0.00	35	6	14.63	-	-	-
UBE3D	0	genome.wustl.edu	37	6	83732240	83732240	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	83732240	83732240	G	T	SNP	UBE3D	ENST00000369747	human	ensembl	69_37n	-1	known	missense	c.778	p.Q260K	1.000	pfam_UBQ-conj_enz_E2-bd_prot	pfam_UBQ-conj_enz_E2-bd_prot	-	no_errors	UBE3D	HGNC	ENSG00000118420	17	0	0.00	11	4	25.00	-	-	-
ZNF860	0	genome.wustl.edu	37	3	32031615	32031615	+	Missense_Mutation	SNP	A	A	C			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	3	32031615	32031615	A	C	SNP	ZNF860	ENST00000360311	human	ensembl	69_37n	+1	known	missense	c.1044	p.E348D	0.632	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385	51	0	0.00	62	8	11.43	-	-	-
ZNRD1-AS1	0	genome.wustl.edu	37	6	30025179	30025179	+	RNA	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	6	30025179	30025179	G	A	SNP	ZNRD1-AS1	ENST00000421692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNRD1-AS1	HGNC	ENSG00000204623	40	0	0.00	47	7	12.73	-	-	-
ZRSR1	0	genome.wustl.edu	37	5	112228667	112228667	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QJ-01A-12D-A19Y-09	TCGA-AC-A2QJ-11A-12D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	140d1805-5e93-4c7f-8492-adbfec23b0bb	d32c7909-42f1-4654-aa3e-0bff663b42de	5	112228667	112228667	G	A	SNP	ZRSR1	ENST00000391338	human	ensembl	69_37n	+1	known	missense	c.1331	p.S444N	0.204	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,pfscan_RRM_dom,prints_U2_small	-	no_errors	ZRSR1	HGNC	ENSG00000212643	64	0	0.00	52	8	13.33	-	-	-
