Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTN1	0	genome.wustl.edu	37	14	69349765	69349767	+	In_Frame_Del	DEL	GTC	GTC	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	GTC	GTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	69349765	69349767	GTC	-	DEL	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	in_frame_del	c.1643_1641	p.T549in_frame_del	1.000:1.000:1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	76	0	0.00	40	29	41.43	-	-	-
AHNAK2	0	genome.wustl.edu	37	14	105408889	105408890	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105408889	105408890	-	GG	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12899_12898	p.M4300fs	0.885:0.839	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	125	0	0.00	57	34	37.36	-	-	-
AHNAK2	0	genome.wustl.edu	37	14	105408895	105408895	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105408895	105408895	A	-	DEL	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_del	c.12893	p.F4298fs	0.080	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	124	0	0.00	57	79	58.09	-	-	-
AHNAK2	0	genome.wustl.edu	37	14	105409384	105409385	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409384	105409385	-	GG	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12404_12403	p.M4135fs	0.769:0.474	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	118	0	0.00	79	53	40.15	-	-	-
AHNAK2	0	genome.wustl.edu	37	14	105409390	105409390	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409390	105409390	A	-	DEL	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_del	c.12398	p.F4133fs	0.988	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	120	0	0.00	68	148	64.35	-	-	-
AHNAK2	0	genome.wustl.edu	37	14	105409649	105409650	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409649	105409650	-	TT	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.12139_12138	p.L4046fs	0.000:0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	102	0	0.00	81	107	56.91	-	-	-
AHNAK2	0	genome.wustl.edu	37	14	105409879	105409880	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409879	105409880	-	GG	INS	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_ins	c.11909_11908	p.M3970fs	0.180:0.170	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	133	0	0.00	42	37	46.84	-	-	-
AHNAK2	0	genome.wustl.edu	37	14	105409885	105409885	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	105409885	105409885	A	-	DEL	AHNAK2	ENST00000333244	human	ensembl	69_37n	-1	known	frame_shift_del	c.11903	p.F3968fs	0.873	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	133	0	0.00	47	108	69.68	-	-	-
ANKRD34A	0	genome.wustl.edu	37	1	145473902	145473902	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	145473902	145473902	G	T	SNP	ANKRD34A	ENST00000323397	human	ensembl	69_37n	+1	known	missense	c.574	p.A192S	0.996	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039	179	0	0.00	104	48	31.58	-	-	-
ARL6IP6	0	genome.wustl.edu	37	2	153616311	153616311	+	Missense_Mutation	SNP	A	A	C			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	2	153616311	153616311	A	C	SNP	ARL6IP6	ENST00000326446	human	ensembl	69_37n	+1	known	missense	c.638	p.N213T	1.000	NULL	NULL	-	no_errors	ARL6IP6	HGNC	ENSG00000177917	81	0	0.00	85	45	34.62	-	-	-
BACH2	0	genome.wustl.edu	37	6	90660255	90660255	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	6	90660255	90660255	A	G	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.1570	p.S524P	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	100	0	0.00	56	278	83.23	-	-	-
BACH2	0	genome.wustl.edu	37	6	90660256	90660256	+	Silent	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	6	90660256	90660256	G	A	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	silent	c.1569	p.C523	0.999	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	100	0	0.00	58	234	80.14	-	-	-
BMP2	0	genome.wustl.edu	37	20	6759416	6759416	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	20	6759416	6759416	C	T	SNP	BMP2	ENST00000378827	human	ensembl	69_37n	+1	known	missense	c.871	p.R291C	1.000	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP2	HGNC	ENSG00000125845	73	0	0.00	113	63	35.80	-	-	-
CEL	0	genome.wustl.edu	37	9	135944524	135944524	+	Silent	SNP	C	C	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	9	135944524	135944524	C	T	SNP	CEL	ENST00000372080	human	ensembl	69_37n	+1	known	silent	c.1173	p.T391	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	8	0	0.00	3	3	50.00	-	-	-
CNNM2	0	genome.wustl.edu	37	10	104835989	104835990	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	10	104835989	104835990	-	C	INS	CNNM2	ENST00000457502	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2383_2384	p.Y795fs	1.000:1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	14	0	0.00	9	4	30.77	-	-	-
CXCR1	0	genome.wustl.edu	37	2	219029024	219029024	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	2	219029024	219029024	A	G	SNP	CXCR1	ENST00000295683	human	ensembl	69_37n	-1	known	missense	c.911	p.I304T	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXC/IL8_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR1/IL8RA,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR1	HGNC	ENSG00000163464	159	0	0.00	217	50	18.73	-	-	-
DCAF15	0	genome.wustl.edu	37	19	14069901	14069902	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	19	14069901	14069902	-	GG	INS	DCAF15	ENST00000254337	human	ensembl	69_37n	+1	known	frame_shift_ins	c.829_830	p.P277fs	0.017:0.033	NULL	NULL	-	no_errors	DCAF15	HGNC	ENSG00000132017	32	0	0.00	13	8	38.10	-	-	-
EGR1	0	genome.wustl.edu	37	5	137803131	137803132	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	5	137803131	137803132	-	C	INS	EGR1	ENST00000239938	human	ensembl	69_37n	+1	known	frame_shift_ins	c.993_994	p.H333fs	0.502:1.000	NULL	pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR1	HGNC	ENSG00000120738	76	0	0.00	30	7	18.92	-	-	-
FAM57B	0	genome.wustl.edu	37	16	30037078	30037078	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	16	30037078	30037078	G	A	SNP	FAM57B	ENST00000380495	human	ensembl	69_37n	-1	known	missense	c.509	p.P170L	1.000	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57B	HGNC	ENSG00000149926	48	0	0.00	45	15	25.00	-	-	-
FAM86JP	0	genome.wustl.edu	37	3	125648080	125648080	+	RNA	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	3	125648080	125648080	G	A	SNP	FAM86JP	ENST00000467239	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.141	-	-	-	no_errors	FAM86JP	HGNC	ENSG00000171084	23	0	0.00	13	4	23.53	-	-	-
FHDC1	0	genome.wustl.edu	37	4	153897341	153897342	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	4	153897341	153897342	-	G	INS	FHDC1	ENST00000260008	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2898_2899	p.T966fs	0.002:0.000	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	24	0	0.00	6	4	40.00	-	-	-
GATA6	0	genome.wustl.edu	37	18	19761419	19761419	+	Silent	SNP	A	A	G			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	18	19761419	19761419	A	G	SNP	GATA6	ENST00000269216	human	ensembl	69_37n	+1	known	silent	c.1308	p.S436	0.464	pfscan_Znf_GATA	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA6	HGNC	ENSG00000141448	106	0	0.00	48	6	11.11	-	-	-
HDAC6	0	genome.wustl.edu	37	X	48665033	48665033	+	Silent	SNP	C	C	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	X	48665033	48665033	C	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	+1	known	silent	c.594	p.A198	0.998	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	71	0	0.00	86	36	29.51	-	-	-
IL13RA2	0	genome.wustl.edu	37	X	114242611	114242611	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	X	114242611	114242611	G	A	SNP	IL13RA2	ENST00000243213	human	ensembl	69_37n	-1	known	missense	c.881	p.T294I	0.000	superfamily_Fibronectin_type3	pfam_IL6_recept-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496	173	0	0.00	227	61	21.11	-	-	-
JAG1	0	genome.wustl.edu	37	20	10629222	10629222	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	20	10629222	10629222	G	A	SNP	JAG1	ENST00000254958	human	ensembl	69_37n	-1	known	missense	c.1544	p.T515I	1.000	pfam_EGF-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_DSL,smart_EGF-like,smart_EGF-like_Ca-bd,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384	105	0	0.00	159	600	78.95	-	-	-
LRRC41	0	genome.wustl.edu	37	1	46745910	46745910	+	Silent	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	46745910	46745910	G	A	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	silent	c.1974	p.D658	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	93	0	0.00	43	16	27.12	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56174909	56174909	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	5	56174909	56174909	A	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	nonsense	c.2068	p.K690*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	210	0	0.00	210	68	24.37	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56180503	56180504	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	5	56180503	56180504	AG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.3832_3833	p.R1278fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	62	0	0.00	51	19	26.76	-	-	-
MFI2	0	genome.wustl.edu	37	3	196743992	196743993	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	3	196743992	196743993	CC	-	DEL	MFI2	ENST00000296350	human	ensembl	69_37n	-1	known	frame_shift_del	c.882_881	p.R294fs	0.930:0.933	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin	pfam_Peptidase_S60,smart_Peptidase_S60,pirsf_Transferrin,prints_Peptidase_S60	-	no_errors	MFI2	HGNC	ENSG00000163975	8	0	0.00	5	9	64.29	-	-	-
MYH8	0	genome.wustl.edu	37	17	10304230	10304230	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	17	10304230	10304230	G	T	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.3301	p.Q1101K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	132	0	0.00	94	15	13.76	-	-	-
NCAN	0	genome.wustl.edu	37	19	19337625	19337626	+	Frame_Shift_Del	DEL	CG	CG	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	19	19337625	19337626	CG	-	DEL	NCAN	ENST00000252575	human	ensembl	69_37n	+1	known	frame_shift_del	c.1403_1404	p.T468fs	0.004:0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like	-	no_errors	NCAN	HGNC	ENSG00000130287	19	0	0.00	4	4	50.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	3	178952085	178952085	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047L	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	146	0	0.00	185	50	21.28	-	-	-
PIK3CG	0	genome.wustl.edu	37	7	106523570	106523570	+	Missense_Mutation	SNP	A	A	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	7	106523570	106523570	A	T	SNP	PIK3CG	ENST00000359195	human	ensembl	69_37n	+1	known	missense	c.2722	p.N908Y	0.964	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	361	0	0.00	335	67	16.67	-	-	-
PLEKHH1	0	genome.wustl.edu	37	14	68053849	68053850	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	68053849	68053850	-	C	INS	PLEKHH1	ENST00000329153	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3992_3993	p.T1334fs	0.000:0.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690	28	0	0.00	48	6	11.11	-	-	-
PPIB	0	genome.wustl.edu	37	15	64449058	64449058	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	15	64449058	64449058	G	A	SNP	PPIB	ENST00000300026	human	ensembl	69_37n	-1	known	missense	c.394	p.H132Y	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIB	HGNC	ENSG00000166794	173	0	0.00	104	26	20.00	-	-	-
PRICKLE4	0	genome.wustl.edu	37	6	41752675	41752675	+	Silent	SNP	G	G	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	6	41752675	41752675	G	A	SNP	PRICKLE4	ENST00000335515	human	ensembl	69_37n	+1	known	silent	c.243	p.E81	0.987	pfam_PET_domain	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE4	HGNC	ENSG00000124593	69	0	0.00	26	9	25.71	-	-	-
PTOV1	0	genome.wustl.edu	37	19	50363394	50363395	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	19	50363394	50363395	-	T	INS	PTOV1	ENST00000391842	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1193_1194	p.Q398fs	1.000:1.000	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960	54	0	0.00	13	10	43.48	-	-	-
SLAIN1	0	genome.wustl.edu	37	13	78335020	78335020	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	13	78335020	78335020	C	T	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	+1	known	missense	c.1406	p.S469F	0.998	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	235	0	0.00	146	66	31.13	-	-	-
TTC3	0	genome.wustl.edu	37	21	38538542	38538542	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	21	38538542	38538542	G	T	SNP	TTC3	ENST00000354749	human	ensembl	69_37n	+1	known	missense	c.4026	p.L1342F	0.955	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670	257	0	0.00	156	58	27.10	-	-	-
UBE4B	0	genome.wustl.edu	37	1	10186920	10186920	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	10186920	10186920	T	C	SNP	UBE4B	ENST00000470736	human	ensembl	69_37n	+1	novel	missense	c.104	p.L35S	0.999	NULL	pfam_Ub_conjug_fac_E4_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	UBE4B	HGNC	ENSG00000130939	150	0	0.00	131	55	29.57	-	-	-
WDR7	0	genome.wustl.edu	37	18	54694371	54694371	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	18	54694371	54694371	T	-	DEL	WDR7	ENST00000254442	human	ensembl	69_37n	+1	known	frame_shift_del	c.4406	p.I1469fs	1.000	NULL	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR7	HGNC	ENSG00000091157	41	0	0.00	25	22	46.81	-	-	-
XIST	0	genome.wustl.edu	37	X	73045755	73045755	+	RNA	SNP	C	C	A			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	X	73045755	73045755	C	A	SNP	XIST	ENST00000429829	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	169	0	0.00	206	220	51.64	-	-	-
ZFP36L1	0	genome.wustl.edu	37	14	69257141	69257142	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	14	69257141	69257142	-	C	INS	ZFP36L1	ENST00000336440	human	ensembl	69_37n	-1	known	frame_shift_ins	c.126_125	p.T43fs	0.968:1.000	pfam_Tis11B_N	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L1	HGNC	ENSG00000185650	38	0	0.00	26	7	21.21	-	-	-
ZNF669	0	genome.wustl.edu	37	1	247263686	247263686	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A03X-01A-21W-A019-09	TCGA-AN-A03X-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f177234e-e0a7-4f85-b73d-48e0080c805d	222e0fba-5b47-4ee3-b4ff-81e1a15372c1	1	247263686	247263686	C	G	SNP	ZNF669	ENST00000343381	human	ensembl	69_37n	-1	known	missense	c.1385	p.W462S	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF669	HGNC	ENSG00000188295	47	0	0.00	92	16	14.81	-	-	-
