Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADD3	0	genome.wustl.edu	37	10	111860581	111860581	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	10	111860581	111860581	G	A	SNP	ADD3	ENST00000356080	human	ensembl	69_37n	+1	known	missense	c.170	p.R57Q	1.000	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD3	HGNC	ENSG00000148700	102	0	0.00	48	17	26.15	-	-	-
AKAP4	0	genome.wustl.edu	37	X	49957446	49957446	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	49957446	49957446	C	G	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	missense	c.1918	p.E640Q	0.170	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	510	0	0.00	448	62	12.16	-	-	-
AMOTL2	0	genome.wustl.edu	37	3	134089691	134089692	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	134089691	134089692	-	G	INS	AMOTL2	ENST00000249883	human	ensembl	69_37n	-1	known	frame_shift_ins	c.585_584	p.L196fs	0.000:0.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL2	HGNC	ENSG00000114019	22	0	0.00	16	2	11.11	-	-	-
AOX1	0	genome.wustl.edu	37	2	201478612	201478612	+	Missense_Mutation	SNP	G	G	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	201478612	201478612	G	C	SNP	AOX1	ENST00000374700	human	ensembl	69_37n	+1	known	missense	c.1534	p.V512L	0.999	pfam_CO_DH_flav_C,superfamily_CO_DH_flav_C,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356	147	0	0.00	115	27	19.01	-	-	-
AQP12B	0	genome.wustl.edu	37	2	241621869	241621869	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	241621869	241621869	G	A	SNP	AQP12B	ENST00000407834	human	ensembl	69_37n	-1	known	missense	c.386	p.T129M	0.017	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12	pfam_MIP,superfamily_Aquaporin-like,pirsf_Aquaporin_11/12,prints_Aquaporin_12,prints_MIP	-	no_errors	AQP12B	HGNC	ENSG00000185176	13	0	0.00	10	8	44.44	-	-	-
BAZ1B	0	genome.wustl.edu	37	7	72892315	72892315	+	Missense_Mutation	SNP	C	C	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	7	72892315	72892315	C	A	SNP	BAZ1B	ENST00000339594	human	ensembl	69_37n	-1	known	missense	c.1476	p.R492S	1.000	superfamily_ARM-type_fold	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954	204	0	0.00	156	61	27.98	-	-	-
BRPF1	0	genome.wustl.edu	37	3	9786077	9786078	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	9786077	9786078	-	C	INS	BRPF1	ENST00000383829	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2805_2806	p.Q937fs	1.000:1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	34	0	0.00	30	4	11.76	-	-	-
CEP290	0	genome.wustl.edu	37	12	88514773	88514773	+	Splice_Site	SNP	C	C	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	12	88514773	88514773	C	A	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	splice_site	c.1359+1	e13+1	1.000	-	-	-	no_errors	CEP290	HGNC	ENSG00000198707	120	0	0.00	59	12	16.90	-	-	-
CITED1	0	genome.wustl.edu	37	X	71521748	71521748	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	71521748	71521748	A	G	SNP	CITED1	ENST00000431381	human	ensembl	69_37n	-1	known	missense	c.485	p.L162P	0.000	pfam_CITED	pfam_CITED	-	no_errors	CITED1	HGNC	ENSG00000125931	50	0	0.00	18	10	35.71	-	-	-
COL22A1	0	genome.wustl.edu	37	8	139675984	139675984	+	Splice_Site	SNP	C	C	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	8	139675984	139675984	C	A	SNP	COL22A1	ENST00000303045	human	ensembl	69_37n	-1	known	splice_site	c.3151-1	e41-1	0.973	-	-	-	no_errors	COL22A1	HGNC	ENSG00000169436	85	0	0.00	138	46	25.00	-	-	-
COL4A5	0	genome.wustl.edu	37	X	107829952	107829952	+	Silent	SNP	T	T	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	107829952	107829952	T	C	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	+1	known	silent	c.1140	p.G380	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	506	0	0.00	466	97	17.20	-	-	-
EPAS1	0	genome.wustl.edu	37	2	46588075	46588075	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	46588075	46588075	A	G	SNP	EPAS1	ENST00000263734	human	ensembl	69_37n	+1	known	missense	c.625	p.N209D	0.678	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_HLH_DNA-bd,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016	92	0	0.00	53	22	29.33	-	-	-
FAM47B	0	genome.wustl.edu	37	X	34961802	34961802	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	34961802	34961802	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	+1	known	missense	c.854	p.P285L	0.874	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	218	0	0.00	217	136	38.42	-	-	-
FREM2	0	genome.wustl.edu	37	13	39450219	39450219	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	13	39450219	39450219	G	A	SNP	FREM2	ENST00000280481	human	ensembl	69_37n	+1	known	missense	c.8342	p.R2781H	0.995	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	280	0	0.00	459	97	17.41	-	-	-
LHX9	0	genome.wustl.edu	37	1	197890729	197890729	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	1	197890729	197890729	G	A	SNP	LHX9	ENST00000367387	human	ensembl	69_37n	+1	known	missense	c.673	p.G225R	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX9	HGNC	ENSG00000143355	22	0	0.00	26	8	23.53	-	-	-
MADCAM1	0	genome.wustl.edu	37	19	501725	501725	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	19	501725	501725	G	A	SNP	MADCAM1	ENST00000215637	human	ensembl	69_37n	+1	known	missense	c.724	p.D242N	0.000	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like	-	no_errors	MADCAM1	HGNC	ENSG00000099866	10	0	0.00	1	4	80.00	-	-	-
MADD	0	genome.wustl.edu	37	11	47304168	47304168	+	Splice_Site	SNP	G	G	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	11	47304168	47304168	G	T	SNP	MADD	ENST00000311027	human	ensembl	69_37n	+1	known	splice_site	c.1705+1	e8+1	1.000	-	-	-	no_errors	MADD	HGNC	ENSG00000110514	99	0	0.00	74	31	29.52	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56170931	56170932	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	56170931	56170932	-	T	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.1759_1760	p.S588fs	1.000:1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	271	0	0.00	95	82	46.33	-	-	-
NEFH	0	genome.wustl.edu	37	22	29879515	29879515	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	22	29879515	29879515	G	-	DEL	NEFH	ENST00000310624	human	ensembl	69_37n	+1	known	frame_shift_del	c.1035	p.Q345fs	1.000	pfam_F	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	66	0	0.00	26	12	31.58	-	-	-
NEFH	0	genome.wustl.edu	37	22	29879522	29879522	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	22	29879522	29879522	G	-	DEL	NEFH	ENST00000310624	human	ensembl	69_37n	+1	known	frame_shift_del	c.1042	p.E348fs	1.000	pfam_F	pfam_F,pfam_DUF1388	-	no_errors	NEFH	HGNC	ENSG00000100285	65	0	0.00	26	12	31.58	-	-	-
OR14C36	0	genome.wustl.edu	37	1	248512969	248512969	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	1	248512969	248512969	C	T	SNP	OR14C36	ENST00000317861	human	ensembl	69_37n	+1	known	missense	c.893	p.A298V	0.089	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR14C36	HGNC	ENSG00000177174	238	1	0.42	90	77	46.11	-	-	-
PODXL2	0	genome.wustl.edu	37	3	127358204	127358205	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	127358204	127358205	-	C	INS	PODXL2	ENST00000342480	human	ensembl	69_37n	+1	known	frame_shift_ins	c.187_188	p.E63fs	1.000:1.000	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631	80	0	0.00	111	50	31.06	-	-	-
RAD17	0	genome.wustl.edu	37	5	68692264	68692264	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	68692264	68692264	C	T	SNP	RAD17	ENST00000380774	human	ensembl	69_37n	+1	known	missense	c.1496	p.T499M	0.996	tigrfam_Checkpoint_prot_Rad24_fun/met	tigrfam_Checkpoint_prot_Rad24_fun/met	-	no_errors	RAD17	HGNC	ENSG00000152942	86	0	0.00	51	16	23.88	-	-	-
RYR3	0	genome.wustl.edu	37	15	33927942	33927942	+	Silent	SNP	C	C	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	15	33927942	33927942	C	T	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	silent	c.3303	p.V1101	0.003	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	44	0	0.00	36	7	16.28	-	-	-
SCAPER	0	genome.wustl.edu	37	15	77025641	77025641	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	15	77025641	77025641	T	C	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	missense	c.1951	p.R651G	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	40	0	0.00	32	6	15.79	-	-	-
SLC6A7	0	genome.wustl.edu	37	5	149574323	149574323	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	149574323	149574323	T	-	DEL	SLC6A7	ENST00000230671	human	ensembl	69_37n	+1	known	frame_shift_del	c.66	p.S22fs	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	26	0	0.00	10	5	33.33	-	-	-
SLC6A7	0	genome.wustl.edu	37	5	149574326	149574327	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	5	149574326	149574327	CC	-	DEL	SLC6A7	ENST00000230671	human	ensembl	69_37n	+1	known	frame_shift_del	c.69_70	p.D23fs	1.000:1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A7	HGNC	ENSG00000011083	25	0	0.00	10	5	33.33	-	-	-
SMARCD3	0	genome.wustl.edu	37	7	150936239	150936239	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	7	150936239	150936239	G	-	DEL	SMARCD3	ENST00000262188	human	ensembl	69_37n	-1	known	frame_shift_del	c.1402	p.Q468fs	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD3	HGNC	ENSG00000082014	61	0	0.00	15	2	11.76	-	-	-
SRPK3	0	genome.wustl.edu	37	X	153050911	153050911	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	153050911	153050911	A	G	SNP	SRPK3	ENST00000370101	human	ensembl	69_37n	+1	known	missense	c.1640	p.E547G	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343	13	0	0.00	5	17	77.27	-	-	-
SRPK3	0	genome.wustl.edu	37	X	153050912	153050912	+	Missense_Mutation	SNP	G	G	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	153050912	153050912	G	C	SNP	SRPK3	ENST00000370101	human	ensembl	69_37n	+1	known	missense	c.1641	p.E547D	1.000	pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343	14	0	0.00	4	13	68.42	-	-	-
TAF1	0	genome.wustl.edu	37	X	70627430	70627430	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	70627430	70627430	C	T	SNP	TAF1	ENST00000449580	human	ensembl	69_37n	+1	known	missense	c.4111	p.H1371Y	1.000	pirsf_TAF1_animal,superfamily_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	220	0	0.00	139	26	15.76	-	-	-
TBC1D10A	0	genome.wustl.edu	37	22	30691731	30691732	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	22	30691731	30691732	-	C	INS	TBC1D10A	ENST00000215790	human	ensembl	69_37n	-1	known	frame_shift_ins	c.519_518	p.H174fs	0.998:1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992	26	0	0.00	9	2	18.18	-	-	-
TEAD2	0	genome.wustl.edu	37	19	49850509	49850509	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	19	49850509	49850509	C	T	SNP	TEAD2	ENST00000377214	human	ensembl	69_37n	-1	known	missense	c.856	p.G286S	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219	128	0	0.00	58	21	26.58	-	-	-
TGFA	0	genome.wustl.edu	37	2	70742012	70742012	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	70742012	70742012	T	C	SNP	TGFA	ENST00000295400	human	ensembl	69_37n	-1	known	missense	c.73	p.N25D	1.000	NULL	pfscan_EG-like_dom	-	no_errors	TGFA	HGNC	ENSG00000163235	26	0	0.00	14	5	26.32	-	-	-
TIMELESS	0	genome.wustl.edu	37	12	56815795	56815795	+	Missense_Mutation	SNP	C	C	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	12	56815795	56815795	C	A	SNP	TIMELESS	ENST00000553532	human	ensembl	69_37n	-1	known	missense	c.2530	p.D844Y	1.000	pfam_TIMELESS_C	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	248	0	0.00	299	45	13.08	-	-	-
TMEM44	0	genome.wustl.edu	37	3	194331653	194331653	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	3	194331653	194331653	C	G	SNP	TMEM44	ENST00000392432	human	ensembl	69_37n	-1	known	missense	c.1150	p.V384L	0.721	NULL	NULL	-	no_errors	TMEM44	HGNC	ENSG00000145014	53	0	0.00	56	13	18.84	-	-	-
TP53	0	genome.wustl.edu	37	17	7579356	7579358	+	In_Frame_Del	DEL	GAC	GAC	-			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	GAC	GAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	17	7579356	7579358	GAC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	in_frame_del	c.331_329	p.R110in_frame_del	0.011:0.000:0.004	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	236	0	0.00	126	107	45.53	-	-	-
TRIOBP	0	genome.wustl.edu	37	22	38121788	38121789	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	22	38121788	38121789	-	C	INS	TRIOBP	ENST00000406386	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3225_3226	p.R1077fs	0.986:0.998	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	18	0	0.00	21	4	16.00	-	-	-
TTN	0	genome.wustl.edu	37	2	179455719	179455719	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	2	179455719	179455719	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	nonsense	c.53029	p.R17677*	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	233	0	0.00	192	40	17.24	-	-	-
WRNIP1	0	genome.wustl.edu	37	6	2785330	2785330	+	Silent	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	6	2785330	2785330	G	A	SNP	WRNIP1	ENST00000380773	human	ensembl	69_37n	+1	known	silent	c.1812	p.L604	1.000	pfam_MgsA_C	pfam_MgsA_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,smart_Znf_Rad18_put,smart_AAA+_ATPase	-	no_errors	WRNIP1	HGNC	ENSG00000124535	86	0	0.00	66	35	34.65	-	-	-
XYLT2	0	genome.wustl.edu	37	17	48431826	48431827	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	17	48431826	48431827	-	C	INS	XYLT2	ENST00000017003	human	ensembl	69_37n	+1	known	frame_shift_ins	c.686_687	p.V232fs	0.998:0.995	NULL	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	39	0	0.00	8	2	20.00	-	-	-
ZNF711	0	genome.wustl.edu	37	X	84525072	84525072	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0AS-01A-11W-A019-09	TCGA-AN-A0AS-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2257c942-1274-47e7-86ad-b92ecfafc205	0ec33f45-45dc-4fd6-b1c9-0312bff04da4	X	84525072	84525072	G	A	SNP	ZNF711	ENST00000395402	human	ensembl	69_37n	+1	known	missense	c.1052	p.C351Y	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	179	0	0.00	155	28	15.30	-	-	-
