Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AARS2	0	genome.wustl.edu	37	6	44278884	44278884	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	44278884	44278884	C	T	SNP	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	missense	c.596	p.R199H	0.908	pfam_Ala-tRNA-synth_IIc_N,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	24	0	0.00	21	28	57.14	-	-	-
ABCA4	0	genome.wustl.edu	37	1	94466444	94466444	+	Missense_Mutation	SNP	T	T	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	94466444	94466444	T	A	SNP	ABCA4	ENST00000370225	human	ensembl	69_37n	-1	known	missense	c.6427	p.M2143L	1.000	smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691	85	0	0.00	65	67	50.76	-	-	-
ABCB4	0	genome.wustl.edu	37	7	87074281	87074282	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	87074281	87074282	-	A	INS	ABCB4	ENST00000265723	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1016_1015	p.S339fs	1.000:1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB4	HGNC	ENSG00000005471	47	0	0.00	40	15	27.27	-	-	-
ACVR1B	0	genome.wustl.edu	37	12	52379131	52379131	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	52379131	52379131	C	T	SNP	ACVR1B	ENST00000257963	human	ensembl	69_37n	+1	known	nonsense	c.1135	p.R379*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	63	0	0.00	51	38	42.70	-	-	-
AFF2	0	genome.wustl.edu	37	X	148037946	148037946	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	X	148037946	148037946	C	G	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	+1	known	missense	c.2371	p.P791A	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	183	0	0.00	73	48	39.67	-	-	-
ALG10B	0	genome.wustl.edu	37	12	38714401	38714401	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	38714401	38714401	G	A	SNP	ALG10B	ENST00000308742	human	ensembl	69_37n	+1	known	missense	c.808	p.V270I	0.010	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10B	HGNC	ENSG00000175548	139	0	0.00	180	60	24.90	-	-	-
ANKRD18B	0	genome.wustl.edu	37	9	33541181	33541182	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	9	33541181	33541182	-	A	INS	ANKRD18B	ENST00000290943	human	ensembl	69_37n	+1	known	frame_shift_ins	c.845_846	p.R285fs	0.070:0.073	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18B	HGNC	ENSG00000230453	11	0	0.00	27	12	30.77	-	-	-
AOAH	0	genome.wustl.edu	37	7	36698846	36698846	+	Silent	SNP	A	A	G			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	36698846	36698846	A	G	SNP	AOAH	ENST00000258749	human	ensembl	69_37n	-1	known	silent	c.315	p.D105	1.000	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,superfamily_Esterase_SGNH_hydro-type,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250	246	0	0.00	278	148	34.74	-	-	-
BRWD1	0	genome.wustl.edu	37	21	40559077	40559078	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	21	40559077	40559078	-	T	INS	BRWD1	ENST00000333229	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6838_6837	p.L2279fs	0.662:0.249	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	BRWD1	HGNC	ENSG00000185658	55	0	0.00	25	12	32.43	-	-	-
C14orf37	0	genome.wustl.edu	37	14	58598350	58598350	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	14	58598350	58598350	G	A	SNP	C14orf37	ENST00000267485	human	ensembl	69_37n	-1	known	missense	c.1711	p.P571S	0.000	NULL	NULL	-	no_errors	C14orf37	HGNC	ENSG00000139971	51	0	0.00	19	71	78.02	-	-	-
CAMK2D	0	genome.wustl.edu	37	4	114434519	114434519	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	4	114434519	114434519	A	G	SNP	CAMK2D	ENST00000454265	human	ensembl	69_37n	-1	known	missense	c.911	p.I304T	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK2D	HGNC	ENSG00000145349	77	0	0.00	86	29	25.22	-	-	-
CHEK2P2	0	genome.wustl.edu	37	15	20496657	20496657	+	RNA	SNP	C	C	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	15	20496657	20496657	C	T	SNP	CHEK2P2	ENST00000555186	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.921	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156	15	0	0.00	15	8	34.78	-	-	-
COL14A1	0	genome.wustl.edu	37	8	121222032	121222032	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	8	121222032	121222032	C	T	SNP	COL14A1	ENST00000523142	human	ensembl	69_37n	+1	putative	missense	c.628	p.R210C	0.956	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_start_codon:pseudogene:no_stop_codon	COL14A1	HGNC	ENSG00000187955	49	0	0.00	62	57	47.90	-	-	-
DNAAF3	0	genome.wustl.edu	37	19	55672058	55672059	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	19	55672058	55672059	-	C	INS	DNAAF3	ENST00000527223	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1202_1201	p.D401fs	0.001:0.002	NULL	NULL	-	no_errors	DNAAF3	HGNC	ENSG00000167646	16	0	0.00	14	3	17.65	-	-	-
DNHD1	0	genome.wustl.edu	37	11	6579764	6579764	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	11	6579764	6579764	G	A	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	+1	known	missense	c.9052	p.D3018N	0.697	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	60	0	0.00	56	22	28.21	-	-	-
FAM59B	0	genome.wustl.edu	37	2	26405961	26405961	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	26405961	26405961	G	A	SNP	FAM59B	ENST00000401533	human	ensembl	69_37n	+1	known	missense	c.379	p.V127I	1.000	NULL	superfamily_SAM/pointed	-	no_errors	FAM59B	HGNC	ENSG00000157833	37	0	0.00	20	11	35.48	-	-	-
FGF23	0	genome.wustl.edu	37	12	4479739	4479739	+	Silent	SNP	G	G	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	4479739	4479739	G	T	SNP	FGF23	ENST00000237837	human	ensembl	69_37n	-1	known	silent	c.526	p.R176	0.901	NULL	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF23	HGNC	ENSG00000118972	29	0	0.00	13	18	58.06	-	-	-
GPR39	0	genome.wustl.edu	37	2	133175158	133175158	+	Silent	SNP	G	G	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	133175158	133175158	G	T	SNP	GPR39	ENST00000329321	human	ensembl	69_37n	+1	known	silent	c.543	p.V181	0.184	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR39	HGNC	ENSG00000183840	53	0	0.00	26	24	48.00	-	-	-
GRM3	0	genome.wustl.edu	37	7	86415634	86415634	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	86415634	86415634	G	A	SNP	GRM3	ENST00000361669	human	ensembl	69_37n	+1	known	missense	c.526	p.A176T	1.000	pfam_ANF_lig-bd_rcpt,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C	-	no_errors	GRM3	HGNC	ENSG00000198822	82	0	0.00	77	44	36.36	-	-	-
HLA-DRB1	0	genome.wustl.edu	37	6	32549525	32549525	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	32549525	32549525	C	G	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.461	p.G154A	0.607	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	21	0	0.00	152	26	14.61	-	-	-
HLA-DRB1	0	genome.wustl.edu	37	6	32549531	32549531	+	Missense_Mutation	SNP	T	T	C			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	32549531	32549531	T	C	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.455	p.Y152C	1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	24	0	0.00	162	27	14.29	-	-	-
LAMA2	0	genome.wustl.edu	37	6	129785500	129785500	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	129785500	129785500	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	69_37n	+1	known	missense	c.7058	p.R2353H	1.000	superfamily_ConA-like_lec_gl,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	98	0	0.00	186	57	23.46	-	-	-
NID1	0	genome.wustl.edu	37	1	236205579	236205579	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	236205579	236205579	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.766	p.G256R	0.989	pfam_Nidogen_extracell_dom,smart_Nidogen_extracell_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	13	0	0.00	75	22	22.68	-	-	-
NKX2-5	0	genome.wustl.edu	37	5	172659707	172659708	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	5	172659707	172659708	-	G	INS	NKX2-5	ENST00000329198	human	ensembl	69_37n	-1	known	frame_shift_ins	c.840_839	p.A281fs	0.138:0.398	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	NKX2-5	HGNC	ENSG00000183072	9	0	0.00	6	4	40.00	-	-	-
NTSR2	0	genome.wustl.edu	37	2	11802135	11802135	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	11802135	11802135	C	T	SNP	NTSR2	ENST00000306928	human	ensembl	69_37n	-1	known	missense	c.856	p.V286M	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_NT2_rcpt,prints_NT_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	NTSR2	HGNC	ENSG00000169006	15	0	0.00	16	6	27.27	-	-	-
NUP153	0	genome.wustl.edu	37	6	17629273	17629273	+	Missense_Mutation	SNP	T	T	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	17629273	17629273	T	A	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.3250	p.I1084L	0.000	NULL	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	107	0	0.00	98	17	14.78	-	-	-
PGD	0	genome.wustl.edu	37	1	10477067	10477067	+	Missense_Mutation	SNP	T	T	G			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	10477067	10477067	T	G	SNP	PGD	ENST00000270776	human	ensembl	69_37n	+1	known	missense	c.868	p.L290V	1.000	pfam_6PGDH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	-	no_errors	PGD	HGNC	ENSG00000142657	104	0	0.00	102	34	25.00	-	-	-
PHACTR1	0	genome.wustl.edu	37	6	13287303	13287303	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	13287303	13287303	G	T	SNP	PHACTR1	ENST00000379335	human	ensembl	69_37n	+1	known	missense	c.428	p.R143L	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137	187	0	0.00	168	53	23.98	-	-	-
PHLDA1	0	genome.wustl.edu	37	12	76424820	76424820	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	76424820	76424820	G	T	SNP	PHLDA1	ENST00000266671	human	ensembl	69_37n	-1	known	missense	c.702	p.F234L	1.000	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC	ENSG00000139289	87	0	0.00	23	38	62.30	-	-	-
PKD1L2	0	genome.wustl.edu	37	16	81242149	81242150	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	16	81242149	81242150	TT	-	DEL	PKD1L2	ENST00000337114	human	ensembl	69_37n	-1	known	frame_shift_del	c.707_706	p.N236fs	0.998:0.999	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473	15	0	0.00	23	25	48.08	-	-	-
PNKP	0	genome.wustl.edu	37	19	50370371	50370372	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	19	50370371	50370372	GG	-	DEL	PNKP	ENST00000322344	human	ensembl	69_37n	-1	known	frame_shift_del	c.91_90	p.L31fs	0.141:0.055	superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met	pfam_PNK3P,superfamily_HAD-like_dom,superfamily_SMAD_FHA_domain,tigrfam_PNK_3Pase_met,tigrfam_Polynucleotide_phosphatase,tigrfam_HAD-SF_hydro_IIIA	-	no_errors	PNKP	HGNC	ENSG00000039650	11	0	0.00	8	22	70.97	-	-	-
RFPL1-AS1	0	genome.wustl.edu	37	22	29835418	29835418	+	RNA	SNP	C	C	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	22	29835418	29835418	C	A	SNP	RFPL1-AS1	ENST00000461286	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RFPL1-AS1	HGNC	ENSG00000225465	9	0	0.00	1	12	92.31	-	-	-
SNRPN	0	genome.wustl.edu	37	15	25222051	25222051	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	15	25222051	25222051	G	T	SNP	SNRPN	ENST00000444203	human	ensembl	69_37n	+1	known	nonsense	c.307	p.G103*	1.000	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739	72	0	0.00	66	30	31.25	-	-	-
SUPT5H	0	genome.wustl.edu	37	19	39955678	39955678	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	19	39955678	39955678	G	A	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	+1	known	missense	c.865	p.D289N	1.000	smart_KOW,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	27	0	0.00	27	8	22.86	-	-	-
TGFBR2	0	genome.wustl.edu	37	3	30732950	30732950	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	3	30732950	30732950	G	A	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	+1	known	nonsense	c.1638	p.W546*	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	99	0	0.00	55	88	61.54	-	-	-
TOR1AIP1	0	genome.wustl.edu	37	1	179870511	179870511	+	Missense_Mutation	SNP	G	G	T			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	179870511	179870511	G	T	SNP	TOR1AIP1	ENST00000435319	human	ensembl	69_37n	+1	known	missense	c.727	p.D243Y	0.068	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP1	HGNC	ENSG00000143337	49	0	0.00	63	15	19.23	-	-	-
TP53	0	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	37	0	0.00	19	41	68.33	-	-	-
USP5	0	genome.wustl.edu	37	12	6964674	6964674	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	6964674	6964674	G	A	SNP	USP5	ENST00000229268	human	ensembl	69_37n	+1	known	missense	c.221	p.R74Q	0.995	pirsf_Ubiquitinyl_hydrolase	pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19	-	no_errors	USP5	HGNC	ENSG00000111667	19	0	0.00	25	8	23.53	-	-	-
USP9X	0	genome.wustl.edu	37	X	41076559	41076559	+	Missense_Mutation	SNP	C	C	G			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	X	41076559	41076559	C	G	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	+1	known	missense	c.6172	p.H2058D	1.000	NULL	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	117	0	0.00	34	22	39.29	-	-	-
VWA5B2	0	genome.wustl.edu	37	3	183952089	183952090	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	3	183952089	183952090	-	C	INS	VWA5B2	ENST00000426955	human	ensembl	69_37n	+1	known	frame_shift_ins	c.724_725	p.H245fs	1.000:1.000	NULL	NULL	-	no_errors	VWA5B2	HGNC	ENSG00000145198	25	0	0.00	23	3	11.54	-	-	-
ZNF705E	0	genome.wustl.edu	37	11	71527792	71527792	+	RNA	SNP	T	T	C			TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	11	71527792	71527792	T	C	SNP	ZNF705E	ENST00000525199	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.761	-	-	-	no_errors	ZNF705E	HGNC	ENSG00000214534	12	0	0.00	25	37	59.68	-	-	-
