Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTR2	0	genome.wustl.edu	37	2	65455000	65455000	+	RNA	SNP	G	G	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	2	65455000	65455000	G	A	SNP	ACTR2	ENST00000471552	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ACTR2	HGNC	ENSG00000138071	78	0	0.00	39	14	26.42	-	-	-
ADAMTS17	0	genome.wustl.edu	37	15	100649205	100649205	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	15	100649205	100649205	C	T	SNP	ADAMTS17	ENST00000268070	human	ensembl	69_37n	-1	known	missense	c.2005	p.G669S	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470	74	0	0.00	30	18	37.50	-	-	-
COL6A2	0	genome.wustl.edu	37	21	47549113	47549113	+	Missense_Mutation	SNP	C	C	T			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	21	47549113	47549113	C	T	SNP	COL6A2	ENST00000357838	human	ensembl	69_37n	+1	known	missense	c.2465	p.A822V	0.193	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	18	0	0.00	16	10	38.46	-	-	-
DHDH	0	genome.wustl.edu	37	19	49438313	49438313	+	Silent	SNP	C	C	T			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	19	49438313	49438313	C	T	SNP	DHDH	ENST00000221403	human	ensembl	69_37n	+1	known	silent	c.147	p.H49	0.108	pfam_Oxidoreductase_N	pfam_Oxidoreductase_N	-	no_errors	DHDH	HGNC	ENSG00000104808	44	0	0.00	21	18	46.15	-	-	-
EIF2C3	0	genome.wustl.edu	37	1	36509128	36509128	+	Silent	SNP	C	C	T			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	1	36509128	36509128	C	T	SNP	EIF2C3	ENST00000373191	human	ensembl	69_37n	+1	known	silent	c.2253	p.L751	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C3	HGNC	ENSG00000126070	168	0	0.00	119	93	43.87	-	-	-
FAM179A	0	genome.wustl.edu	37	2	29259479	29259479	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	2	29259479	29259479	G	A	SNP	FAM179A	ENST00000379558	human	ensembl	69_37n	+1	known	missense	c.2491	p.A831T	0.007	superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350	166	0	0.00	91	38	29.46	-	-	-
HTR5A	0	genome.wustl.edu	37	7	154862859	154862859	+	Missense_Mutation	SNP	G	G	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	7	154862859	154862859	G	A	SNP	HTR5A	ENST00000287907	human	ensembl	69_37n	+1	known	missense	c.250	p.V84I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219	67	0	0.00	26	30	53.57	-	-	-
LMBR1	0	genome.wustl.edu	37	7	156619309	156619309	+	Silent	SNP	G	G	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	7	156619309	156619309	G	A	SNP	LMBR1	ENST00000354505	human	ensembl	69_37n	-1	known	silent	c.309	p.S103	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1	HGNC	ENSG00000105983	116	0	0.00	85	45	34.35	-	-	-
LPAR6	0	genome.wustl.edu	37	13	48986180	48986180	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	13	48986180	48986180	A	G	SNP	LPAR6	ENST00000345941	human	ensembl	69_37n	-1	known	missense	c.380	p.L127P	0.985	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y5_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	LPAR6	HGNC	ENSG00000139679	67	0	0.00	18	25	58.14	-	-	-
MIR1284	0	genome.wustl.edu	37	3	71591235	71591235	+	RNA	SNP	C	C	G			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	3	71591235	71591235	C	G	SNP	MIR1284	ENST00000408337	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR1284	HGNC	ENSG00000221264	29	0	0.00	25	14	35.90	-	-	-
PCSK5	0	genome.wustl.edu	37	9	78790207	78790207	+	Silent	SNP	C	C	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	9	78790207	78790207	C	A	SNP	PCSK5	ENST00000376767	human	ensembl	69_37n	+1	known	silent	c.2062	p.R688	0.000	NULL	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	10	0	0.00	13	6	31.58	-	-	-
POLR2F	0	genome.wustl.edu	37	22	38349806	38349806	+	Missense_Mutation	SNP	C	C	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	22	38349806	38349806	C	A	SNP	POLR2F	ENST00000442738	human	ensembl	69_37n	+1	known	missense	c.12	p.N4K	1.000	superfamily_RNA_poly_omega/K/RPABC2	pfam_RNA_poly_omega/K/RPABC2,superfamily_RNA_poly_omega/K/RPABC2	-	no_errors	POLR2F	HGNC	ENSG00000100142	84	0	0.00	26	31	54.39	-	-	-
RPL4	0	genome.wustl.edu	37	15	66795050	66795050	+	Silent	SNP	G	G	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	15	66795050	66795050	G	A	SNP	RPL4	ENST00000307961	human	ensembl	69_37n	-1	known	silent	c.321	p.T107	0.939	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom	-	no_errors	RPL4	HGNC	ENSG00000174444	229	0	0.00	185	114	38.13	-	-	-
SKIDA1	0	genome.wustl.edu	37	10	21805480	21805480	+	Silent	SNP	T	T	C			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	10	21805480	21805480	T	C	SNP	SKIDA1	ENST00000449193	human	ensembl	69_37n	-1	known	silent	c.1272	p.E424	0.381	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592	20	0	0.00	20	6	23.08	-	-	-
TMED4	0	genome.wustl.edu	37	7	44621754	44621754	+	Silent	SNP	G	G	A			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	7	44621754	44621754	G	A	SNP	TMED4	ENST00000457408	human	ensembl	69_37n	-1	known	silent	c.52	p.L18	0.418	NULL	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED4	HGNC	ENSG00000158604	14	0	0.00	11	5	31.25	-	-	-
TP53	0	genome.wustl.edu	37	17	7578555	7578555	+	Splice_Site	SNP	C	C	T			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	17	7578555	7578555	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.376-1	e4-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	92	0	0.00	10	33	76.74	-	-	-
TREM1	0	genome.wustl.edu	37	6	41243863	41243863	+	Silent	SNP	C	C	T			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	6	41243863	41243863	C	T	SNP	TREM1	ENST00000244709	human	ensembl	69_37n	-1	known	silent	c.705	p.*235	0.022	NULL	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731	193	0	0.00	120	58	32.58	-	-	-
TULP3	0	genome.wustl.edu	37	12	3040249	3040249	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0XT-01A-11D-A10G-09	TCGA-AN-A0XT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	353d9161-95fd-4bec-abb7-859d9ee19785	447c5906-5e0a-48f1-acaf-80ea46081efd	12	3040249	3040249	A	G	SNP	TULP3	ENST00000228245	human	ensembl	69_37n	+1	known	missense	c.539	p.N180S	0.000	superfamily_Tubby_C-like	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246	119	0	0.00	90	76	45.78	-	-	-
