Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AARS	0	genome.wustl.edu	37	16	70292941	70292941	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	16	70292941	70292941	G	C	SNP	AARS	ENST00000261772	human	ensembl	69_37n	-1	known	missense	c.1934	p.S645C	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,pfam_Pesterase_DHHA1,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS	HGNC	ENSG00000090861	44	0	0.00	57	7	10.94	-	-	-
B3GNT3	0	genome.wustl.edu	37	19	17922586	17922586	+	Silent	SNP	G	G	A			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	19	17922586	17922586	G	A	SNP	B3GNT3	ENST00000318683	human	ensembl	69_37n	+1	known	silent	c.774	p.V258	0.730	pfam_Glyco_trans_31	pfam_Glyco_trans_31	-	no_errors	B3GNT3	HGNC	ENSG00000179913	34	0	0.00	31	6	16.22	-	-	-
CDH24	0	genome.wustl.edu	37	14	23518908	23518908	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	14	23518908	23518908	C	G	SNP	CDH24	ENST00000267383	human	ensembl	69_37n	-1	known	missense	c.1639	p.G547R	0.984	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880	23	0	0.00	18	4	18.18	-	-	-
CREBRF	0	genome.wustl.edu	37	5	172537628	172537628	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	5	172537628	172537628	G	C	SNP	CREBRF	ENST00000540014	human	ensembl	69_37n	+1	known	missense	c.1527	p.K509N	1.000	NULL	NULL	-	no_errors	CREBRF	HGNC	ENSG00000164463	190	0	0.00	302	36	10.65	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23685749	23685751	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	15	23685749	23685751	CTC	-	DEL	GOLGA6L2	ENST00000567107	human	ensembl	69_37n	-1	putative	in_frame_del	c.1873_1871	p.G624in_frame_del	0.050:0.050:0.058	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	8	0	0.00	6	3	33.33	-	-	-
GPR98	0	genome.wustl.edu	37	5	89979505	89979505	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	5	89979505	89979505	G	C	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	+1	known	missense	c.5767	p.E1923Q	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	53	0	0.00	61	10	14.08	-	-	-
MKRN3	0	genome.wustl.edu	37	15	23811712	23811712	+	Silent	SNP	C	C	T			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	15	23811712	23811712	C	T	SNP	MKRN3	ENST00000314520	human	ensembl	69_37n	+1	known	silent	c.783	p.L261	0.999	smart_Znf_CCCH	pfam_Znf_C3HC4_RING-type,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN3	HGNC	ENSG00000179455	33	0	0.00	40	5	11.11	-	-	-
POLR3E	0	genome.wustl.edu	37	16	22337509	22337510	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	16	22337509	22337510	-	C	INS	POLR3E	ENST00000299853	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1776_1777	p.G594fs	0.991:1.000	NULL	pfam_RNA_pol_III_Rpc5	-	no_errors	POLR3E	HGNC	ENSG00000058600	18	0	0.00	14	2	12.50	-	-	-
POTEB	0	genome.wustl.edu	37	15	22077651	22077651	+	Silent	SNP	A	A	G			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	15	22077651	22077651	A	G	SNP	POTEB	ENST00000439682	human	ensembl	69_37n	-1	known	silent	c.579	p.A193	0.570	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEB	HGNC	ENSG00000233917	9	0	0.00	12	6	33.33	-	-	-
PRG4	0	genome.wustl.edu	37	1	186276520	186276520	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	1	186276520	186276520	A	C	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	+1	known	missense	c.1669	p.T557P	0.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	30	0	0.00	64	18	21.69	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-AO-A0JC-01A-11W-A071-09	TCGA-AO-A0JC-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	120f55df-5d1d-4073-a21a-632c892d3da9	a9132e75-b777-4399-969c-d1e8fab91117	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	29	0	0.00	29	10	25.64	-	-	-
