Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKLE1	0	genome.wustl.edu	37	19	17394278	17394278	+	Silent	SNP	G	G	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	19	17394278	17394278	G	T	SNP	ANKLE1	ENST00000404261	human	ensembl	69_37n	+1	known	silent	c.705	p.S235	0.000	superfamily_Lactate_DH/Glyco_Ohase_4_C	pfam_Ankyrin_rpt,pfam_LEM,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM	-	no_errors	ANKLE1	HGNC	ENSG00000160117	24	0	0.00	28	9	24.32	-	-	-
ANKLE2	0	genome.wustl.edu	37	12	133312082	133312082	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	133312082	133312082	T	C	SNP	ANKLE2	ENST00000357997	human	ensembl	69_37n	-1	known	missense	c.1610	p.K537R	0.150	NULL	pfam_LEM,superfamily_LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM	-	no_errors	ANKLE2	HGNC	ENSG00000176915	217	0	0.00	223	55	19.78	-	-	-
B3GNT7	0	genome.wustl.edu	37	2	232262638	232262638	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	2	232262638	232262638	G	T	SNP	B3GNT7	ENST00000287590	human	ensembl	69_37n	+1	known	missense	c.208	p.A70S	0.000	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT7	HGNC	ENSG00000156966	33	0	0.00	24	8	25.00	-	-	-
BACH2	0	genome.wustl.edu	37	6	90660239	90660239	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	90660239	90660239	G	A	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.1586	p.A529V	1.000	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	65	0	0.00	83	22	20.95	-	-	-
CDC40	0	genome.wustl.edu	37	6	110550072	110550072	+	Silent	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	110550072	110550072	C	T	SNP	CDC40	ENST00000307731	human	ensembl	69_37n	+1	known	silent	c.1455	p.I485	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC40	HGNC	ENSG00000168438	133	0	0.00	90	17	15.60	-	-	-
CPNE2	0	genome.wustl.edu	37	16	57180088	57180088	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	57180088	57180088	T	C	SNP	CPNE2	ENST00000290776	human	ensembl	69_37n	+1	known	missense	c.1394	p.M465T	1.000	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE2	HGNC	ENSG00000140848	34	0	0.00	27	5	15.62	-	-	-
DCHS2	0	genome.wustl.edu	37	4	155157976	155157976	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	155157976	155157976	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.6463	p.P2155S	0.130	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	128	0	0.00	60	23	27.71	-	-	-
DNAJB5	0	genome.wustl.edu	37	9	34990767	34990767	+	Nonsense_Mutation	SNP	T	T	G			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	9	34990767	34990767	T	G	SNP	DNAJB5	ENST00000454002	human	ensembl	69_37n	+1	known	nonsense	c.140	p.L47*	1.000	NULL	pfam_DnaJ_C,pfam_DnaJ_N,superfamily_DnaJ_N,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJB5	HGNC	ENSG00000137094	106	1	0.93	43	45	51.14	-	-	-
DPP8	0	genome.wustl.edu	37	15	65792988	65792988	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	15	65792988	65792988	T	G	SNP	DPP8	ENST00000341861	human	ensembl	69_37n	-1	known	missense	c.550	p.S184R	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom	-	no_errors	DPP8	HGNC	ENSG00000074603	456	0	0.00	362	96	20.96	-	-	-
EHD1	0	genome.wustl.edu	37	11	64622048	64622048	+	Silent	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	11	64622048	64622048	C	T	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	silent	c.1362	p.T454	0.039	smart_EPS15_homology,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	107	0	0.00	44	25	36.23	-	-	-
EIF3I	0	genome.wustl.edu	37	1	32694368	32694369	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	32694368	32694369	GG	-	DEL	EIF3I	ENST00000373586	human	ensembl	69_37n	+1	known	frame_shift_del	c.680_681	p.R227fs	1.000:1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EIF3I	HGNC	ENSG00000084623	160	0	0.00	108	42	27.63	-	-	-
EPB49	0	genome.wustl.edu	37	8	21931298	21931298	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	8	21931298	21931298	A	T	SNP	EPB49	ENST00000265800	human	ensembl	69_37n	+1	known	missense	c.787	p.I263F	0.985	NULL	pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin_headpiece,pfscan_Villin_headpiece	-	no_errors	EPB49	HGNC	ENSG00000158856	195	0	0.00	74	98	56.98	-	-	-
FAM40A	0	genome.wustl.edu	37	1	110586328	110586328	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	110586328	110586328	G	A	SNP	FAM40A	ENST00000369795	human	ensembl	69_37n	+1	known	missense	c.1136	p.R379Q	1.000	NULL	pfam_DUF3402,pfam_N1221	-	no_errors	FAM40A	HGNC	ENSG00000143093	78	0	0.00	75	16	17.58	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115973	8115976	+	Frame_Shift_Del	DEL	CCGC	CCGC	-			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	CCGC	CCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	10	8115973	8115976	CCGC	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_del	c.1322_1325	p.A442fs	1.000:0.996:1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	69	0	0.00	47	35	41.67	-	-	-
GRIK1	0	genome.wustl.edu	37	21	31023532	31023532	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	21	31023532	31023532	T	C	SNP	GRIK1	ENST00000535441	human	ensembl	69_37n	-1	known	missense	c.860	p.N287S	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189	103	0	0.00	78	51	39.23	-	-	-
HERC2P4	0	genome.wustl.edu	37	16	32163607	32163607	+	RNA	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	32163607	32163607	G	A	SNP	HERC2P4	ENST00000563904	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267	102	0	0.00	140	18	11.39	-	-	-
HTR2A	0	genome.wustl.edu	37	13	47469795	47469795	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	13	47469795	47469795	C	T	SNP	HTR2A	ENST00000378688	human	ensembl	69_37n	-1	known	missense	c.247	p.V83I	0.061	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT2A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468	262	1	0.38	233	60	20.48	-	-	-
INSRR	0	genome.wustl.edu	37	1	156813013	156813013	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	156813013	156813013	T	C	SNP	INSRR	ENST00000368195	human	ensembl	69_37n	-1	known	missense	c.2909	p.D970G	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	INSRR	HGNC	ENSG00000027644	115	1	0.86	235	36	13.28	-	-	-
LRBA	0	genome.wustl.edu	37	4	151356833	151356833	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	151356833	151356833	A	T	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	missense	c.6982	p.L2328M	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	129	0	0.00	67	30	30.61	-	-	-
MED15	0	genome.wustl.edu	37	22	20937198	20937198	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	22	20937198	20937198	C	T	SNP	MED15	ENST00000263205	human	ensembl	69_37n	+1	known	missense	c.1481	p.T494M	0.971	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917	97	0	0.00	39	29	42.65	-	-	-
MIER1	0	genome.wustl.edu	37	1	67447566	67447568	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	67447566	67447568	AAG	-	DEL	MIER1	ENST00000401041	human	ensembl	69_37n	+1	known	in_frame_del	c.1334_1336	p.E446in_frame_del	0.998:0.975:1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER1	HGNC	ENSG00000198160	155	0	0.00	109	29	21.01	-	-	-
NEMF	0	genome.wustl.edu	37	14	50298943	50298943	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	14	50298943	50298943	G	A	SNP	NEMF	ENST00000298310	human	ensembl	69_37n	-1	known	missense	c.788	p.P263L	0.997	pfam_Fibro-bd_N	pfam_Fibro-bd_N,pfam_DUF3441,pfam_DUF814,superfamily_FlgN-like_dom	-	no_errors	NEMF	HGNC	ENSG00000165525	340	0	0.00	222	85	27.69	-	-	-
NUTF2	0	genome.wustl.edu	37	16	67902441	67902441	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	67902441	67902441	C	T	SNP	NUTF2	ENST00000219169	human	ensembl	69_37n	+1	known	missense	c.209	p.A70V	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NUTF2	HGNC	ENSG00000102898	159	0	0.00	105	89	45.88	-	-	-
OR6C76	0	genome.wustl.edu	37	12	55820958	55820959	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	55820958	55820959	-	A	INS	OR6C76	ENST00000328314	human	ensembl	69_37n	+1	known	frame_shift_ins	c.921_922	p.K311fs	0.003:0.016	NULL	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6C76	HGNC	ENSG00000185821	19	0	0.00	22	4	15.38	-	-	-
PARD3	0	genome.wustl.edu	37	10	34620159	34620159	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	10	34620159	34620159	G	A	SNP	PARD3	ENST00000374789	human	ensembl	69_37n	-1	known	missense	c.2728	p.R910C	1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3	HGNC	ENSG00000148498	189	0	0.00	135	37	21.39	-	-	-
PDGFRA	0	genome.wustl.edu	37	4	55152033	55152033	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	55152033	55152033	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	69_37n	+1	known	missense	c.2465	p.R822H	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Tyr_kinase_VEGFR_rcpt_N	-	no_errors	PDGFRA	HGNC	ENSG00000134853	159	0	0.00	90	41	31.30	-	-	-
PDZRN3	0	genome.wustl.edu	37	3	73432563	73432563	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	73432563	73432563	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	69_37n	-1	known	missense	c.3154	p.D1052N	0.999	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	284	0	0.00	108	107	49.77	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	200	0	0.00	33	148	81.77	-	-	-
PRKG2	0	genome.wustl.edu	37	4	82125820	82125820	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	82125820	82125820	C	A	SNP	PRKG2	ENST00000264399	human	ensembl	69_37n	-1	known	nonsense	c.382	p.E128*	1.000	pirsf_cGMP-dependent_protein_kinase	pfam_Prot_kinase_cat_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_cGMP-dependent_protein_kinase,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_cat_dom,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin	-	no_errors	PRKG2	HGNC	ENSG00000138669	57	0	0.00	69	14	16.87	-	-	-
RBMS3	0	genome.wustl.edu	37	3	29781333	29781333	+	Silent	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	29781333	29781333	C	T	SNP	RBMS3	ENST00000383767	human	ensembl	69_37n	+1	known	silent	c.522	p.D174	0.976	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,prints_Hud_Sxl_RNA,pfscan_RRM_dom	-	no_errors	RBMS3	HGNC	ENSG00000144642	359	0	0.00	135	140	50.91	-	-	-
SEPT4	0	genome.wustl.edu	37	17	56603076	56603076	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	17	56603076	56603076	C	T	SNP	SEPT4	ENST00000457347	human	ensembl	69_37n	-1	known	missense	c.563	p.R188Q	1.000	pfam_Cell_div_GTP-bd	pfam_Cell_div_GTP-bd	-	no_errors	SEPT4	HGNC	ENSG00000108387	251	0	0.00	279	75	21.13	-	-	-
SETD5	0	genome.wustl.edu	37	3	9490166	9490166	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	9490166	9490166	C	A	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	+1	known	missense	c.2198	p.A733E	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	200	0	0.00	176	34	16.19	-	-	-
SIRPG	0	genome.wustl.edu	37	20	1616960	1616960	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	20	1616960	1616960	G	A	SNP	SIRPG	ENST00000303415	human	ensembl	69_37n	-1	known	missense	c.622	p.R208C	0.878	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	SIRPG	HGNC	ENSG00000089012	385	0	0.00	316	92	22.49	-	-	-
SLC2A3	0	genome.wustl.edu	37	12	8083112	8083112	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	8083112	8083112	G	C	SNP	SLC2A3	ENST00000075120	human	ensembl	69_37n	-1	known	missense	c.637	p.L213V	1.000	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804	361	0	0.00	224	73	24.58	-	-	-
TAF4B	0	genome.wustl.edu	37	18	23915146	23915146	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	18	23915146	23915146	C	G	SNP	TAF4B	ENST00000269142	human	ensembl	69_37n	+1	known	missense	c.2267	p.S756C	1.000	pfam_TAF4	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	360	0	0.00	128	74	36.45	-	-	-
TRDN	0	genome.wustl.edu	37	6	123576256	123576256	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	123576256	123576256	C	T	SNP	TRDN	ENST00000398178	human	ensembl	69_37n	-1	known	missense	c.1921	p.E641K	0.569	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	438	0	0.00	198	127	39.08	-	-	-
TULP4	0	genome.wustl.edu	37	6	158834165	158834165	+	Silent	SNP	C	C	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	158834165	158834165	C	T	SNP	TULP4	ENST00000367097	human	ensembl	69_37n	+1	known	silent	c.321	p.F107	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338	236	0	0.00	220	61	21.71	-	-	-
VCAN	0	genome.wustl.edu	37	5	82817939	82817939	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	5	82817939	82817939	G	T	SNP	VCAN	ENST00000265077	human	ensembl	69_37n	+1	known	nonsense	c.3814	p.E1272*	0.844	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EGF-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EGF-like,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427	170	0	0.00	134	26	16.25	-	-	-
WDR20	0	genome.wustl.edu	37	14	102675094	102675094	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	14	102675094	102675094	G	A	SNP	WDR20	ENST00000454394	human	ensembl	69_37n	+1	known	missense	c.680	p.G227E	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153	74	0	0.00	32	32	50.00	-	-	-
ZNF729	0	genome.wustl.edu	37	19	22487564	22487564	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	19	22487564	22487564	G	A	SNP	ZNF729	ENST00000357491	human	ensembl	69_37n	+1	known	missense	c.232	p.E78K	0.057	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_stop_codon	ZNF729	HGNC	ENSG00000196350	706	0	0.00	522	109	17.25	-	-	-
