Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BAHCC1	0	genome.wustl.edu	37	17	79414760	79414760	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	79414760	79414760	G	-	DEL	BAHCC1	ENST00000307745	human	ensembl	69_37n	+1	known	frame_shift_del	c.3862	p.S1291fs	0.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	11	0	0.00	27	9	25.00	-	-	-
BCMO1	0	genome.wustl.edu	37	16	81303769	81303769	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	16	81303769	81303769	T	A	SNP	BCMO1	ENST00000258168	human	ensembl	69_37n	+1	known	nonsense	c.849	p.Y283*	0.965	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697	99	0	0.00	83	12	12.63	-	-	-
BRPF1	0	genome.wustl.edu	37	3	9783065	9783065	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	9783065	9783065	A	C	SNP	BRPF1	ENST00000383829	human	ensembl	69_37n	+1	known	missense	c.1796	p.E599A	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983	69	0	0.00	84	18	17.48	-	-	-
ELOVL5	0	genome.wustl.edu	37	6	53156612	53156612	+	Splice_Site	SNP	G	G	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	53156612	53156612	G	A	SNP	ELOVL5	ENST00000370918	human	ensembl	69_37n	-1	known	splice_site	c.206+2	e2+2	1.000	-	-	-	no_errors	ELOVL5	HGNC	ENSG00000012660	172	0	0.00	196	28	12.50	-	-	-
GNAS	0	genome.wustl.edu	37	20	57485019	57485019	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	20	57485019	57485019	A	G	SNP	GNAS	ENST00000354359	human	ensembl	69_37n	+1	known	missense	c.856	p.I286V	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	103	0	0.00	97	25	20.49	-	-	-
HLA-A	0	genome.wustl.edu	37	6	29910604	29910604	+	Silent	SNP	C	C	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	29910604	29910604	C	A	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	+1	known	silent	c.144	p.A48	0.000	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	17	0	0.00	49	14	22.22	-	-	-
HLA-DRB6	0	genome.wustl.edu	37	6	32521160	32521160	+	RNA	SNP	C	C	G			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	6	32521160	32521160	C	G	SNP	HLA-DRB6	ENST00000411500	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.953	-	-	-	no_errors	HLA-DRB6	HGNC	ENSG00000229391	13	0	0.00	44	20	31.25	-	-	-
LILRA1	0	genome.wustl.edu	37	19	55107152	55107152	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	19	55107152	55107152	C	T	SNP	LILRA1	ENST00000251372	human	ensembl	69_37n	+1	known	missense	c.710	p.A237V	0.000	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like	-	no_errors	LILRA1	HGNC	ENSG00000104974	210	0	0.00	249	65	20.63	-	-	-
MAGEA11	0	genome.wustl.edu	37	X	148798316	148798316	+	Silent	SNP	C	C	G			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	148798316	148798316	C	G	SNP	MAGEA11	ENST00000355220	human	ensembl	69_37n	+1	known	silent	c.1170	p.A390	0.116	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247	50	0	0.00	69	9	11.54	-	-	-
MPZL1	0	genome.wustl.edu	37	1	167741689	167741689	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	1	167741689	167741689	C	T	SNP	MPZL1	ENST00000359523	human	ensembl	69_37n	+1	known	nonsense	c.436	p.Q146*	0.446	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like,prints_Myelin_P0	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0	-	no_errors	MPZL1	HGNC	ENSG00000197965	164	0	0.00	210	33	13.58	-	-	-
MUC16	0	genome.wustl.edu	37	19	9007506	9007506	+	Silent	SNP	G	G	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	19	9007506	9007506	G	A	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.39462	p.S13154	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	109	0	0.00	377	51	11.92	-	-	-
NF1	0	genome.wustl.edu	37	17	29586058	29586058	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	29586058	29586058	G	C	SNP	NF1	ENST00000358273	human	ensembl	69_37n	+1	known	missense	c.4341	p.Q1447H	1.000	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	246	0	0.00	185	66	26.29	-	-	-
PCDH19	0	genome.wustl.edu	37	X	99662740	99662740	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	99662740	99662740	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.856	p.R286C	0.115	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	107	0	0.00	92	12	11.54	-	-	-
PHF6	0	genome.wustl.edu	37	X	133559244	133559244	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	133559244	133559244	A	T	SNP	PHF6	ENST00000394292	human	ensembl	69_37n	+1	known	missense	c.985	p.N329Y	1.000	smart_Znf_PHD	superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF6	HGNC	ENSG00000156531	400	0	0.00	319	59	15.61	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	213	0	0.00	172	41	19.25	-	-	-
RASAL2	0	genome.wustl.edu	37	1	178411925	178411925	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	1	178411925	178411925	G	A	SNP	RASAL2	ENST00000367649	human	ensembl	69_37n	+1	known	missense	c.1043	p.R348H	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	216	0	0.00	165	58	26.01	-	-	-
SOCS4	0	genome.wustl.edu	37	14	55510028	55510028	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	14	55510028	55510028	C	A	SNP	SOCS4	ENST00000339298	human	ensembl	69_37n	+1	known	missense	c.269	p.S90Y	1.000	pfam_SOCS	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS4	HGNC	ENSG00000180008	146	0	0.00	144	22	13.25	-	-	-
SYTL4	0	genome.wustl.edu	37	X	99936233	99936233	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	X	99936233	99936233	G	A	SNP	SYTL4	ENST00000454200	human	ensembl	69_37n	-1	known	missense	c.1555	p.R519W	0.997	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	134	0	0.00	168	26	13.40	-	-	-
TP53	0	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	17	7577121	7577121	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.817	p.R273C	0.830	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	135	0	0.00	137	77	35.98	-	-	-
TRANK1	0	genome.wustl.edu	37	3	36879889	36879889	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AW-01A-21D-A12Q-09	TCGA-AR-A1AW-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	33c6b6b5-1484-4002-8f84-ba67525a8777	e93c2d61-5212-4796-8a2c-950db804fddf	3	36879889	36879889	C	A	SNP	TRANK1	ENST00000429976	human	ensembl	69_37n	-1	known	missense	c.5359	p.A1787S	0.999	NULL	pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	150	0	0.00	144	28	16.28	-	-	-
