Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CBFB	0	genome.wustl.edu	37	16	67070577	67070578	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	16	67070577	67070578	-	T	INS	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	frame_shift_ins	c.201_202	p.P69fs	1.000:1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	61	0	0.00	20	12	37.50	-	-	-
CCDC19	0	genome.wustl.edu	37	1	159857798	159857798	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	159857798	159857798	C	T	SNP	CCDC19	ENST00000368099	human	ensembl	69_37n	-1	known	missense	c.421	p.A141T	0.998	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085	72	0	0.00	50	10	16.67	-	-	-
CXCR3	0	genome.wustl.edu	37	X	70836775	70836775	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	X	70836775	70836775	C	T	SNP	CXCR3	ENST00000373691	human	ensembl	69_37n	-1	known	missense	c.688	p.A230T	0.930	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_ATII_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Chemokine_CXCR3,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_Chemokine_rcpt,prints_ATII_rcpt	-	no_errors	CXCR3	HGNC	ENSG00000186810	40	0	0.00	10	10	45.45	-	-	-
DMRT3	0	genome.wustl.edu	37	9	990838	990838	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	9	990838	990838	G	A	SNP	DMRT3	ENST00000190165	human	ensembl	69_37n	+1	known	missense	c.1252	p.V418I	0.998	NULL	pfam_DM_DNA-bd,pfam_DMA,superfamily_DM_DNA-bd,superfamily_UBA-like,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT3	HGNC	ENSG00000064218	27	0	0.00	7	7	50.00	-	-	-
FAM81B	0	genome.wustl.edu	37	5	94772583	94772583	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	5	94772583	94772583	G	A	SNP	FAM81B	ENST00000283357	human	ensembl	69_37n	+1	known	missense	c.866	p.R289H	0.914	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347	32	0	0.00	27	7	20.59	-	-	-
GTF3C3	0	genome.wustl.edu	37	2	197662520	197662520	+	Splice_Site	SNP	C	C	T			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	2	197662520	197662520	C	T	SNP	GTF3C3	ENST00000263956	human	ensembl	69_37n	-1	known	splice_site	c.214+1	e2+1	1.000	-	-	-	no_errors	GTF3C3	HGNC	ENSG00000119041	72	0	0.00	37	32	46.38	-	-	-
HLA-B	0	genome.wustl.edu	37	6	31324830	31324830	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	6	31324830	31324830	G	A	SNP	HLA-B	ENST00000434333	human	ensembl	69_37n	-1	putative	missense	c.11	p.A4V	0.020	NULL	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	-	no_stop_codon	HLA-B	HGNC	ENSG00000234745	10	0	0.00	2	6	75.00	-	-	-
HNRPDL	0	genome.wustl.edu	37	4	83350516	83350516	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	4	83350516	83350516	G	A	SNP	HNRPDL	ENST00000295470	human	ensembl	69_37n	-1	known	nonsense	c.328	p.Q110*	0.989	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRPDL	HGNC	ENSG00000152795	33	0	0.00	15	6	28.57	-	-	-
IVNS1ABP	0	genome.wustl.edu	37	1	185276771	185276771	+	Silent	SNP	A	A	T			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	185276771	185276771	A	T	SNP	IVNS1ABP	ENST00000367498	human	ensembl	69_37n	-1	known	silent	c.381	p.S127	0.853	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679	40	0	0.00	24	23	48.94	-	-	-
MGAT4A	0	genome.wustl.edu	37	2	99256673	99256676	+	Frame_Shift_Del	DEL	TCTG	TCTG	-			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	TCTG	TCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	2	99256673	99256676	TCTG	-	DEL	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	frame_shift_del	c.1039_1036	p.Q346fs	1.000:1.000:1.000:1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	85	0	0.00	37	15	28.30	-	-	-
MYO18B	0	genome.wustl.edu	37	22	26165033	26165033	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	22	26165033	26165033	A	-	DEL	MYO18B	ENST00000335473	human	ensembl	69_37n	+1	known	frame_shift_del	c.1150	p.K384fs	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd_dom,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	36	0	0.00	7	2	22.22	-	-	-
POLD3	0	genome.wustl.edu	37	11	74336609	74336609	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	11	74336609	74336609	A	-	DEL	POLD3	ENST00000263681	human	ensembl	69_37n	+1	known	frame_shift_del	c.890	p.R300fs	0.998	pfam_DNA_polymerase_subunit_Cdc27	pfam_DNA_polymerase_subunit_Cdc27	-	no_errors	POLD3	HGNC	ENSG00000077514	30	0	0.00	12	2	14.29	-	-	-
PRAMEF4	0	genome.wustl.edu	37	1	12939485	12939485	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	12939485	12939485	C	A	SNP	PRAMEF4	ENST00000235349	human	ensembl	69_37n	-1	known	missense	c.1317	p.E439D	0.001	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073	98	0	0.00	41	18	30.51	-	-	-
SEMA4D	0	genome.wustl.edu	37	9	92003919	92003919	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	9	92003919	92003919	G	A	SNP	SEMA4D	ENST00000356444	human	ensembl	69_37n	-1	known	missense	c.818	p.S273F	1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Ig_sub,smart_Ig_sub2,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA4D	HGNC	ENSG00000187764	44	0	0.00	15	6	28.57	-	-	-
SRFBP1	0	genome.wustl.edu	37	5	121356129	121356130	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	5	121356129	121356130	-	A	INS	SRFBP1	ENST00000339397	human	ensembl	69_37n	+1	known	frame_shift_ins	c.699_700	p.N235fs	0.000:0.000	NULL	pfam_Bud-site_select_BUD22	-	no_errors	SRFBP1	HGNC	ENSG00000151304	32	0	0.00	27	4	12.90	-	-	-
TMBIM4	0	genome.wustl.edu	37	12	66531937	66531937	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	12	66531937	66531937	A	-	DEL	TMBIM4	ENST00000358230	human	ensembl	69_37n	-1	known	frame_shift_del	c.520	p.Y174fs	0.028	pfam_Bax_inhibitor_1-related	pfam_Bax_inhibitor_1-related	-	no_errors	TMBIM4	HGNC	ENSG00000155957	34	0	0.00	19	4	17.39	-	-	-
TP53	0	genome.wustl.edu	37	17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	17	7577580	7577580	T	C	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.701	p.Y234C	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	56	0	0.00	14	10	41.67	-	-	-
VPS13D	0	genome.wustl.edu	37	1	12387893	12387893	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	1	12387893	12387893	G	C	SNP	VPS13D	ENST00000358136	human	ensembl	69_37n	+1	known	missense	c.8179	p.A2727P	1.000	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	83	0	0.00	44	20	31.25	-	-	-
WDFY4	0	genome.wustl.edu	37	10	50013339	50013339	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	10	50013339	50013339	G	C	SNP	WDFY4	ENST00000325239	human	ensembl	69_37n	+1	known	missense	c.4519	p.A1507P	0.994	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	49	0	0.00	17	4	19.05	-	-	-
WNK1	0	genome.wustl.edu	37	12	970297	970297	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	12	970297	970297	A	-	DEL	WNK1	ENST00000530271	human	ensembl	69_37n	+1	known	frame_shift_del	c.1739	p.K583fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	23	0	0.00	18	2	10.00	-	-	-
ZC3H14	0	genome.wustl.edu	37	14	89039040	89039040	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	14	89039040	89039040	G	A	SNP	ZC3H14	ENST00000251038	human	ensembl	69_37n	+1	known	missense	c.550	p.E184K	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722	57	0	0.00	33	9	21.43	-	-	-
ZDHHC6	0	genome.wustl.edu	37	10	114192251	114192251	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24P-01A-11D-A167-09	TCGA-AR-A24P-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dbdcf82a-3d37-4cfb-a70b-9b69ada0e732	dc513750-0ca0-47ab-b42f-2054bb6f944f	10	114192251	114192251	C	T	SNP	ZDHHC6	ENST00000369405	human	ensembl	69_37n	-1	known	missense	c.974	p.S325N	1.000	pfam_SH3_2	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041	76	0	0.00	27	19	41.30	-	-	-
