Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB11	0	genome.wustl.edu	37	2	169780189	169780189	+	Silent	SNP	C	C	T			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	169780189	169780189	C	T	SNP	ABCB11	ENST00000263817	human	ensembl	69_37n	-1	known	silent	c.3909	p.L1303	1.000	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB11	HGNC	ENSG00000073734	115	0	0.00	122	16	11.59	-	-	-
ABI3BP	0	genome.wustl.edu	37	3	100569509	100569509	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	100569509	100569509	G	A	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.1295	p.T432I	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	79	0	0.00	93	11	10.58	-	-	-
COL20A1	0	genome.wustl.edu	37	20	61939943	61939943	+	Silent	SNP	C	C	G			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	20	61939943	61939943	C	G	SNP	COL20A1	ENST00000326996	human	ensembl	69_37n	+1	known	silent	c.825	p.G275	0.006	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203	9	0	0.00	10	4	28.57	-	-	-
DAXX	0	genome.wustl.edu	37	6	33288266	33288266	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	6	33288266	33288266	A	C	SNP	DAXX	ENST00000266000	human	ensembl	69_37n	-1	known	missense	c.1142	p.M381R	0.967	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209	36	0	0.00	36	7	16.28	-	-	-
FGGY	0	genome.wustl.edu	37	1	60073504	60073504	+	Silent	SNP	C	C	T			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	60073504	60073504	C	T	SNP	FGGY	ENST00000303721	human	ensembl	69_37n	+1	known	silent	c.933	p.G311	0.002	pfam_Carb_kinase_FGGY_C,tigrfam_Carb_kinase_FGGY-rel	pfam_Carb_kinase_FGGY_C,pfam_Carb_kinase_FGGY_N,tigrfam_Carb_kinase_FGGY-rel	-	no_errors	FGGY	HGNC	ENSG00000172456	94	0	0.00	61	15	19.74	-	-	-
GSTM3	0	genome.wustl.edu	37	1	110279617	110279617	+	RNA	SNP	G	G	A			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	110279617	110279617	G	A	SNP	GSTM3	ENST00000476321	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GSTM3	HGNC	ENSG00000134202	21	0	0.00	22	7	24.14	-	-	-
KLHL4	0	genome.wustl.edu	37	X	86772968	86772968	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	X	86772968	86772968	T	A	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	+1	known	missense	c.72	p.H24Q	1.000	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	49	0	0.00	32	5	13.51	-	-	-
LCE1C	0	genome.wustl.edu	37	1	152777633	152777633	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	1	152777633	152777633	C	T	SNP	LCE1C	ENST00000368768	human	ensembl	69_37n	-1	known	missense	c.322	p.G108R	0.032	NULL	NULL	-	no_errors	LCE1C	HGNC	ENSG00000197084	22	0	0.00	26	6	18.75	-	-	-
LIPE	0	genome.wustl.edu	37	19	42911525	42911525	+	Silent	SNP	C	C	T			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	19	42911525	42911525	C	T	SNP	LIPE	ENST00000244289	human	ensembl	69_37n	-1	known	silent	c.1938	p.L646	0.574	pfam_Steryl_acetyl_hydrolase	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435	24	0	0.00	24	9	27.27	-	-	-
MAGEA12	0	genome.wustl.edu	37	X	151900087	151900087	+	Silent	SNP	G	G	C			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	X	151900087	151900087	G	C	SNP	MAGEA12	ENST00000357916	human	ensembl	69_37n	-1	known	silent	c.714	p.V238	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401	98	0	0.00	90	13	12.62	-	-	-
NCF4	0	genome.wustl.edu	37	22	37266473	37266473	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	22	37266473	37266473	C	G	SNP	NCF4	ENST00000397147	human	ensembl	69_37n	+1	known	missense	c.359	p.P120R	0.994	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,prints_NCF_P40,prints_p67phox,pfscan_Phox,pfscan_SH3_domain	-	no_errors	NCF4	HGNC	ENSG00000100365	49	0	0.00	32	11	25.58	-	-	-
NCOA5	0	genome.wustl.edu	37	20	44693794	44693794	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	20	44693794	44693794	C	G	SNP	NCOA5	ENST00000290231	human	ensembl	69_37n	-1	known	missense	c.703	p.E235Q	1.000	superfamily_Anticodon-bd	superfamily_Anticodon-bd	-	no_errors	NCOA5	HGNC	ENSG00000124160	61	0	0.00	70	10	12.50	-	-	-
OTOGL	0	genome.wustl.edu	37	12	80765807	80765807	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	12	80765807	80765807	G	A	SNP	OTOGL	ENST00000298820	human	ensembl	69_37n	+1	novel	missense	c.1940	p.G647E	0.000	NULL	pfam_VWF_type-D,superfamily_TIL_dom,smart_Unchr_dom_Cys-rich,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	OTOGL	HGNC	ENSG00000165899	91	0	0.00	83	15	15.15	-	-	-
PDCD10	0	genome.wustl.edu	37	3	167437925	167437925	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	167437925	167437925	C	G	SNP	PDCD10	ENST00000392750	human	ensembl	69_37n	-1	known	missense	c.21	p.E7D	1.000	NULL	pfam_DUF1241	-	no_errors	PDCD10	HGNC	ENSG00000114209	120	0	0.00	95	13	12.04	-	-	-
POTEE	0	genome.wustl.edu	37	2	132021946	132021946	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	132021946	132021946	G	A	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	+1	known	missense	c.2918	p.G973D	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	22	0	0.00	12	6	33.33	-	-	-
PRKAR1A	0	genome.wustl.edu	37	17	66526498	66526498	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	17	66526498	66526498	C	T	SNP	PRKAR1A	ENST00000358598	human	ensembl	69_37n	+1	known	nonsense	c.1054	p.R352*	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1A	HGNC	ENSG00000108946	76	0	0.00	71	12	14.46	-	-	-
TM4SF19	0	genome.wustl.edu	37	3	196054386	196054386	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	3	196054386	196054386	C	A	SNP	TM4SF19	ENST00000273695	human	ensembl	69_37n	-1	known	missense	c.76	p.A26S	0.828	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF19	HGNC	ENSG00000145107	21	0	0.00	13	8	38.10	-	-	-
TNFRSF11A	0	genome.wustl.edu	37	18	60036105	60036105	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	18	60036105	60036105	G	A	SNP	TNFRSF11A	ENST00000586569	human	ensembl	69_37n	+1	known	missense	c.955	p.A319T	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655	46	0	0.00	36	13	26.53	-	-	-
TNPO3	0	genome.wustl.edu	37	7	128658078	128658078	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	7	128658078	128658078	G	C	SNP	TNPO3	ENST00000393245	human	ensembl	69_37n	-1	known	missense	c.254	p.S85C	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	65	0	0.00	86	13	13.00	-	-	-
TTN	0	genome.wustl.edu	37	2	179438786	179438786	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	179438786	179438786	C	G	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.64369	p.E21457Q	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	64	0	0.00	45	7	13.21	-	-	-
UGP2	0	genome.wustl.edu	37	2	64117287	64117287	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24U-01A-11D-A167-09	TCGA-AR-A24U-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	567cdc6c-df03-4642-8cbc-a269769ce1a1	12e573ba-3762-4877-b0c4-3631afa3c30b	2	64117287	64117287	G	T	SNP	UGP2	ENST00000337130	human	ensembl	69_37n	+1	known	missense	c.1387	p.D463Y	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764	78	0	0.00	32	5	13.16	-	-	-
