Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC3	0	genome.wustl.edu	37	17	48750941	48750941	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	17	48750941	48750941	C	A	SNP	ABCC3	ENST00000285238	human	ensembl	69_37n	+1	known	missense	c.2521	p.R841S	0.882	pfscan_ABC_transporter-like,tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC3	HGNC	ENSG00000108846	52	0	0.00	31	8	20.51	-	-	-
ADAM23	0	genome.wustl.edu	37	2	207435499	207435499	+	Silent	SNP	G	G	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	207435499	207435499	G	T	SNP	ADAM23	ENST00000264377	human	ensembl	69_37n	+1	known	silent	c.1530	p.V510	0.999	pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	127	0	0.00	47	10	17.54	-	-	-
ADAMTSL1	0	genome.wustl.edu	37	9	18888027	18888027	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	9	18888027	18888027	C	A	SNP	ADAMTSL1	ENST00000388710	human	ensembl	69_37n	+1	known	missense	c.551	p.S184Y	0.025	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	44	0	0.00	20	6	23.08	-	-	-
AMBRA1	0	genome.wustl.edu	37	11	46564000	46564000	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	46564000	46564000	C	A	SNP	AMBRA1	ENST00000458649	human	ensembl	69_37n	-1	known	nonsense	c.1567	p.E523*	0.617	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497	42	0	0.00	35	5	12.50	-	-	-
ATM	0	genome.wustl.edu	37	11	108196269	108196269	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	108196269	108196269	C	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	+1	known	nonsense	c.6805	p.Q2269*	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	44	0	0.00	31	20	39.22	-	-	-
CABS1	0	genome.wustl.edu	37	4	71201597	71201597	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	71201597	71201597	C	T	SNP	CABS1	ENST00000273936	human	ensembl	69_37n	+1	known	missense	c.841	p.R281W	0.001	NULL	NULL	-	no_errors	CABS1	HGNC	ENSG00000145309	46	0	0.00	30	8	21.05	-	-	-
CACNA1E	0	genome.wustl.edu	37	1	181767626	181767626	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	181767626	181767626	C	A	SNP	CACNA1E	ENST00000367573	human	ensembl	69_37n	+1	known	missense	c.6598	p.L2200M	0.964	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	40	0	0.00	24	7	22.58	-	-	-
CCDC88C	0	genome.wustl.edu	37	14	91779543	91779543	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	91779543	91779543	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	69_37n	-1	known	missense	c.2617	p.D873N	1.000	NULL	pfam_HOOK,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133	75	0	0.00	34	7	16.67	-	-	-
CEP192	0	genome.wustl.edu	37	18	13056429	13056429	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	18	13056429	13056429	C	G	SNP	CEP192	ENST00000506447	human	ensembl	69_37n	+1	known	missense	c.3840	p.C1280W	0.598	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	77	0	0.00	26	12	31.58	-	-	-
CNNM4	0	genome.wustl.edu	37	2	97427918	97427918	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	97427918	97427918	C	A	SNP	CNNM4	ENST00000377075	human	ensembl	69_37n	+1	known	missense	c.1182	p.F394L	1.000	NULL	pfam_DUF21,pfam_Cysta_beta_synth_core,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNNM4	HGNC	ENSG00000158158	68	0	0.00	40	6	13.04	-	-	-
CNTLN	0	genome.wustl.edu	37	9	17416099	17416099	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	9	17416099	17416099	T	G	SNP	CNTLN	ENST00000380647	human	ensembl	69_37n	+1	known	missense	c.3026	p.V1009G	0.877	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	46	0	0.00	31	7	18.42	-	-	-
CPNE4	0	genome.wustl.edu	37	3	131293958	131293958	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	131293958	131293958	G	T	SNP	CPNE4	ENST00000502818	human	ensembl	69_37n	-1	known	missense	c.938	p.S313Y	1.000	NULL	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE4	HGNC	ENSG00000196353	80	0	0.00	89	11	11.00	-	-	-
CSMD3	0	genome.wustl.edu	37	8	113988070	113988070	+	Silent	SNP	A	A	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	8	113988070	113988070	A	G	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.1338	p.H446	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	115	0	0.00	69	57	45.24	-	-	-
DPH2	0	genome.wustl.edu	37	1	44436697	44436697	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	44436697	44436697	G	A	SNP	DPH2	ENST00000255108	human	ensembl	69_37n	+1	known	missense	c.320	p.G107D	1.000	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768	50	0	0.00	17	11	37.93	-	-	-
FAM20B	0	genome.wustl.edu	37	1	179019422	179019422	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	179019422	179019422	G	A	SNP	FAM20B	ENST00000263733	human	ensembl	69_37n	+1	known	missense	c.386	p.R129Q	1.000	NULL	pfam_DUF1193	-	no_errors	FAM20B	HGNC	ENSG00000116199	122	0	0.00	59	7	10.61	-	-	-
GREM2	0	genome.wustl.edu	37	1	240656696	240656696	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	240656696	240656696	G	A	SNP	GREM2	ENST00000318160	human	ensembl	69_37n	-1	known	missense	c.80	p.A27V	0.971	pirsf_Gremlin_precursor	pfam_DAN,pfam_Cys_knot,smart_Cys_knot_C,pirsf_Gremlin_precursor,pfscan_Cys_knot_C	-	no_errors	GREM2	HGNC	ENSG00000180875	26	0	0.00	14	4	22.22	-	-	-
GTF2A1	0	genome.wustl.edu	37	14	81658982	81658982	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	81658982	81658982	G	T	SNP	GTF2A1	ENST00000553612	human	ensembl	69_37n	-1	known	missense	c.814	p.Q272K	1.000	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx	-	no_errors	GTF2A1	HGNC	ENSG00000165417	89	0	0.00	27	10	27.03	-	-	-
HHLA1	0	genome.wustl.edu	37	8	133101771	133101771	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	8	133101771	133101771	A	G	SNP	HHLA1	ENST00000414222	human	ensembl	69_37n	-1	known	missense	c.524	p.I175T	1.000	NULL	NULL	-	no_errors	HHLA1	HGNC	ENSG00000132297	72	0	0.00	71	19	21.11	-	-	-
HTR1F	0	genome.wustl.edu	37	3	88039993	88039993	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	88039993	88039993	G	A	SNP	HTR1F	ENST00000319595	human	ensembl	69_37n	+1	known	missense	c.94	p.G32R	0.001	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1F_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1F	HGNC	ENSG00000179097	70	0	0.00	39	10	20.41	-	-	-
IL17B	0	genome.wustl.edu	37	5	148756493	148756493	+	Silent	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	5	148756493	148756493	G	A	SNP	IL17B	ENST00000261796	human	ensembl	69_37n	-1	known	silent	c.117	p.A39	0.734	pfam_Interleukin-17	pfam_Interleukin-17,prints_Interleukin-17_chordata	-	no_errors	IL17B	HGNC	ENSG00000127743	25	0	0.00	21	10	32.26	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118221586	118221586	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	X	118221586	118221586	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.3607	p.Q1203K	0.007	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	56	0	0.00	23	5	17.86	-	-	-
KIF5C	0	genome.wustl.edu	37	2	149798136	149798136	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	149798136	149798136	G	A	SNP	KIF5C	ENST00000435030	human	ensembl	69_37n	+1	known	missense	c.409	p.E137K	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280	112	0	0.00	70	15	17.65	-	-	-
MFSD3	0	genome.wustl.edu	37	8	145736012	145736012	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	8	145736012	145736012	C	T	SNP	MFSD3	ENST00000301327	human	ensembl	69_37n	+1	known	missense	c.862	p.R288C	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700	37	0	0.00	11	15	55.56	-	-	-
MIR519A1	0	genome.wustl.edu	37	19	54255733	54255733	+	RNA	SNP	G	G	C			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	54255733	54255733	G	C	SNP	MIR519A1	ENST00000385257	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.041	-	-	-	no_errors	MIR519A1	HGNC	ENSG00000207992	145	0	0.00	84	11	11.58	-	-	-
MLL2	0	genome.wustl.edu	37	12	49427620	49427622	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	49427620	49427622	TGG	-	DEL	MLL2	ENST00000301067	human	ensembl	69_37n	-1	known	in_frame_del	c.10868_10866	p.Q3623in_frame_del	1.000:1.000:0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL2	HGNC	ENSG00000167548	23	0	0.00	9	3	25.00	-	-	-
MNT	0	genome.wustl.edu	37	17	2297393	2297393	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	17	2297393	2297393	C	-	DEL	MNT	ENST00000174618	human	ensembl	69_37n	-1	known	frame_shift_del	c.751	p.D251fs	1.000	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	MNT	HGNC	ENSG00000070444	21	0	0.00	6	2	25.00	-	-	-
MUC21	0	genome.wustl.edu	37	6	30954618	30954618	+	Silent	SNP	T	T	C			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	6	30954618	30954618	T	C	SNP	MUC21	ENST00000376296	human	ensembl	69_37n	+1	known	silent	c.666	p.A222	0.000	NULL	NULL	-	no_errors	MUC21	HGNC	ENSG00000204544	54	0	0.00	21	26	55.32	-	-	-
NDUFAF1	0	genome.wustl.edu	37	15	41687079	41687079	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	15	41687079	41687079	C	T	SNP	NDUFAF1	ENST00000260361	human	ensembl	69_37n	-1	known	missense	c.737	p.G246E	1.000	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806	39	0	0.00	24	7	22.58	-	-	-
OR4Q3	0	genome.wustl.edu	37	14	20216051	20216051	+	Silent	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	14	20216051	20216051	C	A	SNP	OR4Q3	ENST00000331723	human	ensembl	69_37n	+1	known	silent	c.465	p.I155	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652	140	0	0.00	32	36	52.94	-	-	-
PCDHB2	0	genome.wustl.edu	37	5	140476000	140476000	+	Silent	SNP	G	G	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	5	140476000	140476000	G	T	SNP	PCDHB2	ENST00000194155	human	ensembl	69_37n	+1	known	silent	c.1626	p.A542	0.745	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	55	0	0.00	20	4	16.67	-	-	-
PCLO	0	genome.wustl.edu	37	7	82544944	82544944	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	82544944	82544944	C	T	SNP	PCLO	ENST00000333891	human	ensembl	69_37n	-1	known	missense	c.12358	p.E4120K	1.000	NULL	pfam_Znf_piccolo,pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	74	0	0.00	43	7	14.00	-	-	-
PGR	0	genome.wustl.edu	37	11	100933223	100933223	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	11	100933223	100933223	C	T	SNP	PGR	ENST00000325455	human	ensembl	69_37n	-1	known	missense	c.2167	p.E723K	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175	93	0	0.00	40	10	20.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0.00	28	18	39.13	-	-	-
PKD1L2	0	genome.wustl.edu	37	16	81193423	81193423	+	Splice_Site	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	16	81193423	81193423	C	A	SNP	PKD1L2	ENST00000299598	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.978	-	-	-	no_coding_region	PKD1L2	HGNC	ENSG00000166473	36	0	0.00	16	4	20.00	-	-	-
PKN1	0	genome.wustl.edu	37	19	14574672	14574672	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	14574672	14574672	A	G	SNP	PKN1	ENST00000342216	human	ensembl	69_37n	+1	known	missense	c.1546	p.I516V	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN1	HGNC	ENSG00000123143	22	0	0.00	12	6	33.33	-	-	-
PLCE1	0	genome.wustl.edu	37	10	95993811	95993811	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	10	95993811	95993811	G	C	SNP	PLCE1	ENST00000371380	human	ensembl	69_37n	+1	known	missense	c.1956	p.R652S	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	54	0	0.00	20	10	33.33	-	-	-
POLR1B	0	genome.wustl.edu	37	2	113325615	113325615	+	Silent	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	113325615	113325615	G	A	SNP	POLR1B	ENST00000541869	human	ensembl	69_37n	+1	known	silent	c.1932	p.L644	1.000	pfam_RNA_pol_Rpa2-specific	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630	85	0	0.00	63	16	20.25	-	-	-
PPP2R3A	0	genome.wustl.edu	37	3	135721399	135721399	+	Silent	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	135721399	135721399	G	A	SNP	PPP2R3A	ENST00000264977	human	ensembl	69_37n	+1	known	silent	c.1059	p.L353	0.008	NULL	pfscan_EF_HAND_2	-	no_errors	PPP2R3A	HGNC	ENSG00000073711	72	0	0.00	48	27	36.00	-	-	-
PRDM5	0	genome.wustl.edu	37	4	121698355	121698355	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	121698355	121698355	G	A	SNP	PRDM5	ENST00000264808	human	ensembl	69_37n	-1	known	missense	c.1525	p.R509W	1.000	smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738	101	0	0.00	68	11	13.92	-	-	-
RALGAPA2	0	genome.wustl.edu	37	20	20553660	20553660	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	20	20553660	20553660	G	A	SNP	RALGAPA2	ENST00000430436	human	ensembl	69_37n	-1	known	missense	c.2210	p.S737L	0.992	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RALGAPA2	HGNC	ENSG00000188559	43	0	0.00	32	4	10.81	-	-	-
RANBP2	0	genome.wustl.edu	37	2	109380485	109380487	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	109380485	109380487	GAT	-	DEL	RANBP2	ENST00000283195	human	ensembl	69_37n	+1	known	in_frame_del	c.3490_3492	p.D1167in_frame_del	1.000:1.000:0.985	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	28	0	0.00	18	2	10.00	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037863	10037863	+	RNA	DEL	C	C	-			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	Y	10037863	10037863	C	-	DEL	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	18	0	0.00	10	3	21.43	-	-	-
SAGE1	0	genome.wustl.edu	37	X	134994548	134994548	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	X	134994548	134994548	G	A	SNP	SAGE1	ENST00000324447	human	ensembl	69_37n	+1	known	missense	c.2590	p.E864K	0.995	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	88	0	0.00	46	7	13.21	-	-	-
SCN2A	0	genome.wustl.edu	37	2	166201270	166201270	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	166201270	166201270	G	T	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	+1	known	missense	c.2768	p.W923L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	143	0	0.00	52	15	22.39	-	-	-
SFSWAP	0	genome.wustl.edu	37	12	132241104	132241104	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	132241104	132241104	A	C	SNP	SFSWAP	ENST00000537164	human	ensembl	69_37n	+1	putative	missense	c.554	p.Q185P	0.000	NULL	pfam_Surp,superfamily_Surp,smart_Surp,pfscan_Surp	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SFSWAP	HGNC	ENSG00000061936	34	0	0.00	16	7	30.43	-	-	-
SLC38A4	0	genome.wustl.edu	37	12	47163175	47163175	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	47163175	47163175	G	A	SNP	SLC38A4	ENST00000266579	human	ensembl	69_37n	-1	known	nonsense	c.1336	p.R446*	0.997	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209	48	0	0.00	34	7	17.07	-	-	-
SLC4A4	0	genome.wustl.edu	37	4	72205101	72205101	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	72205101	72205101	G	A	SNP	SLC4A4	ENST00000425175	human	ensembl	69_37n	+1	known	missense	c.268	p.E90K	1.000	NULL	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	58	0	0.00	27	9	25.00	-	-	-
SPATA4	0	genome.wustl.edu	37	4	177116659	177116659	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	177116659	177116659	C	G	SNP	SPATA4	ENST00000280191	human	ensembl	69_37n	-1	known	missense	c.55	p.D19H	0.000	NULL	pfam_DUF1042,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	SPATA4	HGNC	ENSG00000150628	64	0	0.00	21	4	16.00	-	-	-
TET2	0	genome.wustl.edu	37	4	106190872	106190872	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	4	106190872	106190872	G	C	SNP	TET2	ENST00000380013	human	ensembl	69_37n	+1	known	missense	c.4150	p.D1384H	1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	42	0	0.00	21	6	22.22	-	-	-
TIGD7	0	genome.wustl.edu	37	16	3349850	3349850	+	Silent	SNP	A	A	T			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	16	3349850	3349850	A	T	SNP	TIGD7	ENST00000268674	human	ensembl	69_37n	-1	known	silent	c.765	p.V255	0.565	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993	48	0	0.00	61	8	11.59	-	-	-
TRIM33	0	genome.wustl.edu	37	1	114944055	114944055	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	1	114944055	114944055	A	G	SNP	TRIM33	ENST00000358465	human	ensembl	69_37n	-1	known	missense	c.2923	p.C975R	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,prints_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323	41	0	0.00	31	10	24.39	-	-	-
TTPAL	0	genome.wustl.edu	37	20	43113021	43113021	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	20	43113021	43113021	G	A	SNP	TTPAL	ENST00000262605	human	ensembl	69_37n	+1	known	missense	c.490	p.A164T	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPAL	HGNC	ENSG00000124120	64	0	0.00	48	9	15.79	-	-	-
TWF2	0	genome.wustl.edu	37	3	52265497	52265497	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	52265497	52265497	C	A	SNP	TWF2	ENST00000305533	human	ensembl	69_37n	-1	known	missense	c.341	p.G114V	0.996	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin	-	no_errors	TWF2	HGNC	ENSG00000247596	33	0	0.00	28	7	20.00	-	-	-
TYW1B	0	genome.wustl.edu	37	7	72286035	72286035	+	RNA	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	7	72286035	72286035	G	A	SNP	TYW1B	ENST00000437915	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.831	-	-	-	no_errors	TYW1B	HGNC	ENSG00000254184	118	0	0.00	57	11	16.18	-	-	-
WDR66	0	genome.wustl.edu	37	12	122413496	122413496	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	12	122413496	122413496	G	C	SNP	WDR66	ENST00000288912	human	ensembl	69_37n	+1	known	missense	c.2911	p.D971H	0.835	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	87	0	0.00	49	12	19.67	-	-	-
WDR96	0	genome.wustl.edu	37	10	105948072	105948072	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	10	105948072	105948072	C	A	SNP	WDR96	ENST00000357060	human	ensembl	69_37n	-1	known	missense	c.1643	p.R548I	0.871	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748	77	0	0.00	50	19	27.54	-	-	-
XRN1	0	genome.wustl.edu	37	3	142090130	142090130	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	3	142090130	142090130	C	A	SNP	XRN1	ENST00000264951	human	ensembl	69_37n	-1	known	nonsense	c.3019	p.E1007*	1.000	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	115	0	0.00	109	13	10.66	-	-	-
ZC3H15	0	genome.wustl.edu	37	2	187370543	187370543	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	2	187370543	187370543	A	G	SNP	ZC3H15	ENST00000337859	human	ensembl	69_37n	+1	known	missense	c.941	p.Y314C	0.988	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	122	0	0.00	44	9	16.98	-	-	-
ZNF546	0	genome.wustl.edu	37	19	40521493	40521493	+	Silent	SNP	G	G	A			TCGA-AR-A255-01A-11D-A167-09	TCGA-AR-A255-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	505f1398-0bd8-4f1c-a142-651605158bf3	b9cf1b28-7656-4648-a3de-714e4a154c3e	19	40521493	40521493	G	A	SNP	ZNF546	ENST00000347077	human	ensembl	69_37n	+1	known	silent	c.2316	p.T772	0.985	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187	36	0	0.00	26	14	35.00	-	-	-
