Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C1orf101	0	genome.wustl.edu	37	1	244735950	244735950	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	244735950	244735950	C	A	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	+1	known	missense	c.1826	p.T609N	0.407	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	99	0	0.00	98	17	14.78	-	-	-
ESF1	0	genome.wustl.edu	37	20	13753198	13753198	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	20	13753198	13753198	G	C	SNP	ESF1	ENST00000202816	human	ensembl	69_37n	-1	known	missense	c.1213	p.L405V	1.000	NULL	pfam_NUC153	-	no_errors	ESF1	HGNC	ENSG00000089048	336	0	0.00	177	47	20.98	-	-	-
FAM46D	0	genome.wustl.edu	37	X	79698447	79698447	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	X	79698447	79698447	G	T	SNP	FAM46D	ENST00000308293	human	ensembl	69_37n	+1	known	missense	c.409	p.V137F	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	99	0	0.00	43	25	36.76	-	-	-
HRNR	0	genome.wustl.edu	37	1	152189237	152189237	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	152189237	152189237	C	G	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.4868	p.S1623T	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	16	0	0.00	11	6	35.29	-	-	-
KCNIP1	0	genome.wustl.edu	37	5	170145803	170145803	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	5	170145803	170145803	C	T	SNP	KCNIP1	ENST00000411494	human	ensembl	69_37n	+1	known	missense	c.136	p.R46W	1.000	prints_Recoverin	pfam_EF-hand,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_Ca-bd,prints_Recoverin,pfscan_EF_HAND_2	-	no_errors	KCNIP1	HGNC	ENSG00000182132	68	0	0.00	29	11	27.50	-	-	-
LINC00207	0	genome.wustl.edu	37	22	44967346	44967346	+	Silent	SNP	G	G	A			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	22	44967346	44967346	G	A	SNP	LINC00207	ENST00000334566	human	ensembl	69_37n	+1	putative	silent	c.216	p.T72	0.049	NULL	NULL	-	no_errors	LINC00207	HGNC	ENSG00000187012	132	0	0.00	75	32	29.91	-	-	-
NRIP1	0	genome.wustl.edu	37	21	16339800	16339801	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	21	16339800	16339801	-	G	INS	NRIP1	ENST00000318948	human	ensembl	69_37n	-1	known	frame_shift_ins	c.714_713	p.R239fs	0.305:0.998	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530	225	0	0.00	137	40	22.60	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	77	0	0.00	34	10	22.73	-	-	-
PREX2	0	genome.wustl.edu	37	8	69046352	69046352	+	Silent	SNP	C	C	T			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	8	69046352	69046352	C	T	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	+1	known	silent	c.3825	p.V1275	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	89	0	0.00	53	21	28.38	-	-	-
RPRD1A	0	genome.wustl.edu	37	18	33647353	33647353	+	Silent	SNP	A	A	G			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	18	33647353	33647353	A	G	SNP	RPRD1A	ENST00000357384	human	ensembl	69_37n	-1	known	silent	c.15	p.S5	0.405	superfamily_ENTH_VHS	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	RPRD1A	HGNC	ENSG00000141425	95	0	0.00	43	22	33.33	-	-	-
SLC30A1	0	genome.wustl.edu	37	1	211749347	211749347	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	211749347	211749347	C	G	SNP	SLC30A1	ENST00000367001	human	ensembl	69_37n	-1	known	missense	c.907	p.A303P	0.005	pfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A1	HGNC	ENSG00000170385	113	0	0.00	96	18	15.79	-	-	-
SULT1A4	0	genome.wustl.edu	37	16	29472811	29472811	+	Silent	SNP	A	A	G			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	16	29472811	29472811	A	G	SNP	SULT1A4	ENST00000565290	human	ensembl	69_37n	+1	known	silent	c.105	p.Q35	0.951	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT1A4	HGNC	ENSG00000213648	8	0	0.00	5	7	58.33	-	-	-
TCERG1L	0	genome.wustl.edu	37	10	132961403	132961403	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	10	132961403	132961403	G	C	SNP	TCERG1L	ENST00000368642	human	ensembl	69_37n	-1	known	missense	c.1016	p.P339R	0.896	NULL	pfam_FF_domain,pfam_WW_Rsp5_WWP,superfamily_FF_domain,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,smart_FF_domain,pfscan_WW_Rsp5_WWP	-	no_errors	TCERG1L	HGNC	ENSG00000176769	100	0	0.00	40	15	27.27	-	-	-
USP48	0	genome.wustl.edu	37	1	22021710	22021710	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	1	22021710	22021710	T	C	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	missense	c.2732	p.N911S	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	178	0	0.00	122	39	24.22	-	-	-
ZBTB32	0	genome.wustl.edu	37	19	36205635	36205635	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LM-01A-11D-A17W-09	TCGA-AR-A2LM-10A-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	901c3c76-1b59-4c02-8478-8790e9b90244	63fa5a8c-460f-4675-9901-097cfc8964b8	19	36205635	36205635	G	A	SNP	ZBTB32	ENST00000262630	human	ensembl	69_37n	+1	known	missense	c.107	p.G36E	0.965	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590	51	0	0.00	27	17	38.64	-	-	-
