Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACSM2B	0	genome.wustl.edu	37	16	20565132	20565132	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	20565132	20565132	G	A	SNP	ACSM2B	ENST00000329697	human	ensembl	69_37n	-1	known	missense	c.707	p.S236L	0.001	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813	73	0	0.00	20	12	37.50	-	-	-
ADARB2	0	genome.wustl.edu	37	10	1284297	1284297	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	10	1284297	1284297	G	T	SNP	ADARB2	ENST00000381312	human	ensembl	69_37n	-1	known	missense	c.1258	p.H420N	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_Ds-RNA-bd,smart_Ds-RNA-bd,smart_A_deamin,pfscan_Ds-RNA-bd,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	15	0	0.00	7	7	50.00	-	-	-
BAHCC1	0	genome.wustl.edu	37	17	79409977	79409977	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	79409977	79409977	C	-	DEL	BAHCC1	ENST00000307745	human	ensembl	69_37n	+1	known	frame_shift_del	c.1602	p.P536fs	0.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHCC1	HGNC	ENSG00000171282	21	0	0.00	9	2	18.18	-	-	-
C10orf120	0	genome.wustl.edu	37	10	124457832	124457833	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	10	124457832	124457833	-	T	INS	C10orf120	ENST00000329446	human	ensembl	69_37n	-1	known	frame_shift_ins	c.425_424	p.I142fs	0.224:0.144	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559	88	0	0.00	10	12	54.55	-	-	-
CACNA1C	0	genome.wustl.edu	37	12	2800273	2800273	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	12	2800273	2800273	G	C	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	+1	known	missense	c.6538	p.G2180R	0.687	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	58	0	0.00	25	18	41.86	-	-	-
CACNA1I	0	genome.wustl.edu	37	22	39996592	39996592	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	22	39996592	39996592	T	G	SNP	CACNA1I	ENST00000336649	human	ensembl	69_37n	+1	known	missense	c.416	p.I139S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	107	0	0.00	48	28	36.36	-	-	-
CCDC120	0	genome.wustl.edu	37	X	48921458	48921458	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	X	48921458	48921458	C	T	SNP	CCDC120	ENST00000422185	human	ensembl	69_37n	+1	known	missense	c.250	p.R84W	1.000	pfam_DUF3338	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144	31	0	0.00	10	9	47.37	-	-	-
CCDC18	0	genome.wustl.edu	37	1	93671144	93671144	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	93671144	93671144	T	G	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	+1	known	missense	c.1227	p.C409W	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	56	0	0.00	24	13	35.14	-	-	-
CHCHD5	0	genome.wustl.edu	37	2	113343586	113343586	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	113343586	113343586	G	A	SNP	CHCHD5	ENST00000324913	human	ensembl	69_37n	+1	known	missense	c.38	p.G13D	0.970	NULL	pfam_CHCH	-	no_errors	CHCHD5	HGNC	ENSG00000125611	75	0	0.00	24	14	36.84	-	-	-
CKAP5	0	genome.wustl.edu	37	11	46804907	46804907	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	11	46804907	46804907	C	T	SNP	CKAP5	ENST00000415402	human	ensembl	69_37n	-1	known	missense	c.2166	p.M722I	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216	105	0	0.00	41	18	30.51	-	-	-
CLEC5A	0	genome.wustl.edu	37	7	141631601	141631601	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	141631601	141631601	G	A	SNP	CLEC5A	ENST00000546910	human	ensembl	69_37n	-1	known	missense	c.371	p.A124V	0.062	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC5A	HGNC	ENSG00000258227	66	0	0.00	42	15	26.32	-	-	-
COBL	0	genome.wustl.edu	37	7	51095731	51095731	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	51095731	51095731	G	A	SNP	COBL	ENST00000395542	human	ensembl	69_37n	-1	known	missense	c.3308	p.P1103L	0.000	NULL	pfam_Cordon-bleu_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	67	0	0.00	9	33	78.57	-	-	-
CSRNP3	0	genome.wustl.edu	37	2	166514344	166514344	+	Silent	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	166514344	166514344	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	69_37n	+1	known	silent	c.222	p.Y74	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	32	0	0.00	16	5	23.81	-	-	-
DHCR7	0	genome.wustl.edu	37	11	71146439	71146439	+	Silent	SNP	C	C	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	11	71146439	71146439	C	A	SNP	DHCR7	ENST00000355527	human	ensembl	69_37n	-1	known	silent	c.1410	p.L470	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893	11	0	0.00	10	4	28.57	-	-	-
DOT1L	0	genome.wustl.edu	37	19	2191091	2191091	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	19	2191091	2191091	C	A	SNP	DOT1L	ENST00000398665	human	ensembl	69_37n	+1	known	nonsense	c.345	p.Y115*	0.999	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	60	0	0.00	4	10	71.43	-	-	-
EGFR	0	genome.wustl.edu	37	7	55211097	55211097	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	55211097	55211097	G	A	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	+1	known	missense	c.340	p.E114K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	69	0	0.00	29	13	30.95	-	-	-
ERAP2	0	genome.wustl.edu	37	5	96244775	96244775	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	5	96244775	96244775	A	G	SNP	ERAP2	ENST00000437043	human	ensembl	69_37n	+1	known	missense	c.2123	p.H708R	0.996	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP2	HGNC	ENSG00000164308	70	0	0.00	19	12	38.71	-	-	-
FAM227A	0	genome.wustl.edu	37	22	39024855	39024855	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	22	39024855	39024855	A	C	SNP	FAM227A	ENST00000406767	human	ensembl	69_37n	-1	known	missense	c.587	p.F196C	1.000	NULL	superfamily_Staphylocoagulase_N	-	no_errors	FAM227A	HGNC	ENSG00000184949	71	0	0.00	33	15	31.25	-	-	-
FLVCR1	0	genome.wustl.edu	37	1	213046085	213046085	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	213046085	213046085	G	A	SNP	FLVCR1	ENST00000366971	human	ensembl	69_37n	+1	known	missense	c.949	p.E317K	0.921	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	FLVCR1	HGNC	ENSG00000162769	81	0	0.00	54	12	17.91	-	-	-
GRIK2	0	genome.wustl.edu	37	6	102266342	102266342	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	6	102266342	102266342	T	A	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	+1	known	missense	c.1301	p.I434N	0.988	smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	141	0	0.00	70	17	19.54	-	-	-
GYG2	0	genome.wustl.edu	37	X	2761383	2761383	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	X	2761383	2761383	C	G	SNP	GYG2	ENST00000381163	human	ensembl	69_37n	+1	known	missense	c.230	p.S77C	0.987	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG2	HGNC	ENSG00000056998	42	0	0.00	15	23	60.53	-	-	-
HM13	0	genome.wustl.edu	37	20	30115323	30115323	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	20	30115323	30115323	G	A	SNP	HM13	ENST00000398174	human	ensembl	69_37n	+1	known	missense	c.220	p.D74N	1.000	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	pfam_Peptidase_A22B_SPP,smart_Peptidase_A22	-	no_errors	HM13	HGNC	ENSG00000101294	101	0	0.00	6	16	72.73	-	-	-
IGHV4-31	0	genome.wustl.edu	37	14	106805627	106805627	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	14	106805627	106805627	G	C	SNP	IGHV4-31	ENST00000438142	human	ensembl	69_37n	-1	known	missense	c.18	p.F6L	0.000	NULL	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGHV4-31	HGNC	ENSG00000231475	187	1	0.53	82	31	27.43	-	-	-
ITGA3	0	genome.wustl.edu	37	17	48156481	48156481	+	Silent	SNP	G	G	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	48156481	48156481	G	T	SNP	ITGA3	ENST00000320031	human	ensembl	69_37n	+1	known	silent	c.2442	p.L814	0.998	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884	67	0	0.00	4	34	89.47	-	-	-
KCNV1	0	genome.wustl.edu	37	8	110984916	110984916	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	110984916	110984916	G	T	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	missense	c.562	p.P188T	0.821	prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv4	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	125	0	0.00	66	41	38.32	-	-	-
KIAA1958	0	genome.wustl.edu	37	9	115408031	115408031	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	9	115408031	115408031	C	T	SNP	KIAA1958	ENST00000536272	human	ensembl	69_37n	+1	known	missense	c.1357	p.R453W	0.152	superfamily_Integrase_Lambda-type_N	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185	50	0	0.00	38	10	20.83	-	-	-
L3MBTL4	0	genome.wustl.edu	37	18	6171943	6171946	+	Splice_Site	DEL	TGTT	TGTT	-			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	TGTT	TGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	18	6171943	6171946	TGTT	-	DEL	L3MBTL4	ENST00000284898	human	ensembl	69_37n	-1	known	splice_site_del	c.982-5_982-2	e11-2	1.000:0.998:0.859:0.001	-	-	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	48	0	0.00	25	7	21.88	-	-	-
MAGEL2	0	genome.wustl.edu	37	15	23889634	23889634	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	15	23889634	23889634	C	T	SNP	MAGEL2	ENST00000532292	human	ensembl	69_37n	-1	known	missense	c.1447	p.A483T	0.008	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEL2	HGNC	ENSG00000254585	83	0	0.00	6	16	72.73	-	-	-
MAN2C1	0	genome.wustl.edu	37	15	75652054	75652054	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	15	75652054	75652054	G	C	SNP	MAN2C1	ENST00000267978	human	ensembl	69_37n	-1	known	missense	c.1855	p.P619A	0.996	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2C1	HGNC	ENSG00000140400	68	0	0.00	30	9	23.08	-	-	-
MANBA	0	genome.wustl.edu	37	4	103556107	103556107	+	Silent	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	4	103556107	103556107	C	T	SNP	MANBA	ENST00000226578	human	ensembl	69_37n	-1	known	silent	c.2253	p.E751	0.187	NULL	pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_TIM,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like	-	no_errors	MANBA	HGNC	ENSG00000109323	47	0	0.00	31	17	35.42	-	-	-
MASP2	0	genome.wustl.edu	37	1	11106966	11106966	+	Silent	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	11106966	11106966	G	A	SNP	MASP2	ENST00000400897	human	ensembl	69_37n	-1	known	silent	c.216	p.C72	1.000	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Sushi_SCR_CCP,smart_Peptidase_S1_S6,pfscan_CUB,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724	49	0	0.00	9	11	55.00	-	-	-
MED31	0	genome.wustl.edu	37	17	6554834	6554834	+	Silent	SNP	G	G	C			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	6554834	6554834	G	C	SNP	MED31	ENST00000225728	human	ensembl	69_37n	-1	known	silent	c.15	p.V5	1.000	NULL	pfam_Mediator_Med31	-	no_errors	MED31	HGNC	ENSG00000108590	49	0	0.00	10	13	56.52	-	-	-
NOTCH1	0	genome.wustl.edu	37	9	139390623	139390623	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	9	139390623	139390623	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	69_37n	-1	known	missense	c.7568	p.S2523L	0.998	pirsf_Notch,pfam_DUF3454_notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_1,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400	27	0	0.00	7	15	68.18	-	-	-
NR5A2	0	genome.wustl.edu	37	1	200143150	200143150	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	200143150	200143150	G	A	SNP	NR5A2	ENST00000367362	human	ensembl	69_37n	+1	known	missense	c.1438	p.A480T	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A2	HGNC	ENSG00000116833	24	0	0.00	12	4	25.00	-	-	-
NUDT16L1	0	genome.wustl.edu	37	16	4744071	4744071	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	4744071	4744071	G	C	SNP	NUDT16L1	ENST00000590460	human	ensembl	69_37n	+1	novel	missense	c.206	p.W69S	1.000	superfamily_NUDIX_hydrolase_dom-like	superfamily_NUDIX_hydrolase_dom-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NUDT16L1	HGNC	ENSG00000168101	11	0	0.00	3	4	57.14	-	-	-
OBSL1	0	genome.wustl.edu	37	2	220428132	220428132	+	Silent	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	220428132	220428132	G	A	SNP	OBSL1	ENST00000404537	human	ensembl	69_37n	-1	known	silent	c.2625	p.G875	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	OBSL1	HGNC	ENSG00000124006	40	0	0.00	14	9	37.50	-	-	-
OPA3	0	genome.wustl.edu	37	19	46087903	46087903	+	Silent	SNP	A	A	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	19	46087903	46087903	A	G	SNP	OPA3	ENST00000323060	human	ensembl	69_37n	-1	known	silent	c.120	p.Y40	1.000	pfam_OPA3-like	pfam_OPA3-like	-	no_errors	OPA3	HGNC	ENSG00000125741	41	0	0.00	24	9	27.27	-	-	-
OR51Q1	0	genome.wustl.edu	37	11	5443794	5443794	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	11	5443794	5443794	G	A	SNP	OR51Q1	ENST00000300778	human	ensembl	69_37n	+1	known	missense	c.364	p.V122I	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	109	0	0.00	46	18	28.12	-	-	-
P4HB	0	genome.wustl.edu	37	17	79803835	79803835	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	79803835	79803835	G	C	SNP	P4HB	ENST00000331483	human	ensembl	69_37n	-1	known	missense	c.1089	p.D363E	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	P4HB	HGNC	ENSG00000185624	50	0	0.00	14	10	41.67	-	-	-
PKD1	0	genome.wustl.edu	37	16	2158582	2158582	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	2158582	2158582	G	A	SNP	PKD1	ENST00000262304	human	ensembl	69_37n	-1	known	nonsense	c.6586	p.Q2196*	0.859	pfam_PKD/REJ-like,pfscan_REJ-like,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_LipOase_LH2,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like,pfscan_WSC_carb-bd,prints_PKD_1,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	9	0	0.00	3	4	57.14	-	-	-
PRKAR2A	0	genome.wustl.edu	37	3	48802461	48802461	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	3	48802461	48802461	C	T	SNP	PRKAR2A	ENST00000438535	human	ensembl	69_37n	-1	putative	missense	c.154	p.G52R	0.999	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PRKAR2A	HGNC	ENSG00000114302	93	0	0.00	21	10	32.26	-	-	-
PTAFR	0	genome.wustl.edu	37	1	28477350	28477350	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	1	28477350	28477350	C	G	SNP	PTAFR	ENST00000305392	human	ensembl	69_37n	-1	known	missense	c.183	p.M61I	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_PAF_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	PTAFR	HGNC	ENSG00000169403	89	0	0.00	42	11	20.75	-	-	-
RANBP2	0	genome.wustl.edu	37	2	109380159	109380159	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	109380159	109380159	C	T	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	+1	known	missense	c.3164	p.P1055L	0.773	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	49	0	0.00	10	6	37.50	-	-	-
RANBP2	0	genome.wustl.edu	37	2	109380160	109380160	+	Silent	SNP	C	C	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	109380160	109380160	C	A	SNP	RANBP2	ENST00000283195	human	ensembl	69_37n	+1	known	silent	c.3165	p.P1055	0.030	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR-1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	48	0	0.00	10	5	33.33	-	-	-
RB1CC1	0	genome.wustl.edu	37	8	53586673	53586673	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	53586673	53586673	T	-	DEL	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	frame_shift_del	c.734	p.D245fs	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	124	0	0.00	68	18	20.69	-	-	-
RB1CC1	0	genome.wustl.edu	37	8	53586674	53586674	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	53586674	53586674	C	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	missense	c.733	p.D245H	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	129	0	0.00	68	21	23.60	-	-	-
RB1CC1	0	genome.wustl.edu	37	8	53586675	53586675	+	Silent	SNP	A	A	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	53586675	53586675	A	G	SNP	RB1CC1	ENST00000025008	human	ensembl	69_37n	-1	known	silent	c.732	p.P244	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287	129	0	0.00	69	21	23.33	-	-	-
RIMBP3	0	genome.wustl.edu	37	22	20458076	20458076	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	22	20458076	20458076	C	T	SNP	RIMBP3	ENST00000426804	human	ensembl	69_37n	-1	known	missense	c.3226	p.V1076I	0.003	superfamily_Fibronectin_type3	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622	160	0	0.00	84	19	18.45	-	-	-
RPLP0P2	0	genome.wustl.edu	37	11	61405179	61405179	+	RNA	DEL	A	A	-			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	11	61405179	61405179	A	-	DEL	RPLP0P2	ENST00000496593	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742	16	0	0.00	8	5	38.46	-	-	-
SLC23A3	0	genome.wustl.edu	37	2	220029949	220029949	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	220029949	220029949	C	T	SNP	SLC23A3	ENST00000455516	human	ensembl	69_37n	-1	known	missense	c.1133	p.G378E	1.000	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901	23	0	0.00	4	7	63.64	-	-	-
SLC29A4	0	genome.wustl.edu	37	7	5330800	5330800	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	7	5330800	5330800	C	T	SNP	SLC29A4	ENST00000297195	human	ensembl	69_37n	+1	known	missense	c.347	p.A116V	0.998	superfamily_MFS_dom_general_subst_transpt	pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A4	HGNC	ENSG00000164638	89	0	0.00	21	9	29.03	-	-	-
SMYD1	0	genome.wustl.edu	37	2	88396186	88396186	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	2	88396186	88396186	C	A	SNP	SMYD1	ENST00000419482	human	ensembl	69_37n	+1	known	missense	c.771	p.N257K	0.010	smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD1	HGNC	ENSG00000115593	26	0	0.00	17	7	29.17	-	-	-
SNTG1	0	genome.wustl.edu	37	8	51363130	51363130	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	51363130	51363130	C	A	SNP	SNTG1	ENST00000518864	human	ensembl	69_37n	+1	known	missense	c.292	p.L98I	0.995	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	158	0	0.00	92	40	30.08	-	-	-
SPICE1	0	genome.wustl.edu	37	3	113164162	113164162	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	3	113164162	113164162	C	T	SNP	SPICE1	ENST00000295872	human	ensembl	69_37n	-1	known	missense	c.2560	p.V854I	0.996	NULL	NULL	-	no_errors	SPICE1	HGNC	ENSG00000163611	90	0	0.00	42	8	16.00	-	-	-
SRCAP	0	genome.wustl.edu	37	16	30733941	30733941	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	16	30733941	30733941	C	-	DEL	SRCAP	ENST00000262518	human	ensembl	69_37n	+1	known	frame_shift_del	c.3764	p.H1256fs	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	33	0	0.00	10	13	54.17	-	-	-
TBX3	0	genome.wustl.edu	37	12	115112047	115112047	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	12	115112047	115112047	C	T	SNP	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	missense	c.1693	p.A565T	0.129	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	39	0	0.00	0	11	91.67	-	-	-
TMEM132B	0	genome.wustl.edu	37	12	125834062	125834062	+	Silent	SNP	C	C	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	12	125834062	125834062	C	A	SNP	TMEM132B	ENST00000299308	human	ensembl	69_37n	+1	known	silent	c.117	p.P39	0.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364	60	0	0.00	17	11	39.29	-	-	-
TNFRSF10B	0	genome.wustl.edu	37	8	22880477	22880477	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	8	22880477	22880477	C	A	SNP	TNFRSF10B	ENST00000276431	human	ensembl	69_37n	-1	known	missense	c.1030	p.D344Y	0.000	pfam_Death,superfamily_DEATH-like,smart_Death,pirsf_TNFR_10	pfam_Death,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,pirsf_TNFR_10,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10	-	no_errors	TNFRSF10B	HGNC	ENSG00000120889	25	0	0.00	3	7	70.00	-	-	-
TP53	0	genome.wustl.edu	37	17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	59	0	0.00	4	14	77.78	-	-	-
TRIO	0	genome.wustl.edu	37	5	14358322	14358322	+	Silent	SNP	G	G	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	5	14358322	14358322	G	T	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	+1	known	silent	c.2082	p.L694	1.000	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	43	0	0.00	19	13	40.62	-	-	-
TSC22D2	0	genome.wustl.edu	37	3	150128829	150128829	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	3	150128829	150128829	C	G	SNP	TSC22D2	ENST00000480589	human	ensembl	69_37n	+1	putative	missense	c.74	p.A25G	0.866	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TSC22D2	HGNC	ENSG00000196428	50	0	0.00	18	9	33.33	-	-	-
UTP14A	0	genome.wustl.edu	37	X	129053383	129053383	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	X	129053383	129053383	C	T	SNP	UTP14A	ENST00000394422	human	ensembl	69_37n	+1	known	nonsense	c.670	p.R224*	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697	66	0	0.00	27	12	30.77	-	-	-
XPO4	0	genome.wustl.edu	37	13	21417184	21417184	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LR-01A-12D-A18P-09	TCGA-AR-A2LR-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ed8d901f-d8ed-4c26-a7a0-a0baa383b0d2	8f2265a8-ea26-41f4-acf5-89c798d85e8f	13	21417184	21417184	C	T	SNP	XPO4	ENST00000255305	human	ensembl	69_37n	-1	known	missense	c.577	p.E193K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	28	0	0.00	14	11	44.00	-	-	-
