Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
APBA2	0	genome.wustl.edu	37	15	29347021	29347021	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	15	29347021	29347021	A	G	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	+1	known	missense	c.934	p.K312E	1.000	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	77	0	0.00	73	9	10.98	-	-	-
ARHGAP21	0	genome.wustl.edu	37	10	24885700	24885700	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	10	24885700	24885700	A	G	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.3446	p.L1149P	1.000	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	74	0	0.00	51	13	20.31	-	-	-
BNC2	0	genome.wustl.edu	37	9	16437297	16437297	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	16437297	16437297	C	T	SNP	BNC2	ENST00000380672	human	ensembl	69_37n	-1	known	missense	c.895	p.A299T	0.970	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC2	HGNC	ENSG00000173068	74	0	0.00	58	10	14.71	-	-	-
CCDC23	0	genome.wustl.edu	37	1	43282143	43282144	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	43282143	43282144	TC	-	DEL	CCDC23	ENST00000372521	human	ensembl	69_37n	-1	known	frame_shift_del	c.73_72	p.K25fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC23	HGNC	ENSG00000177868	48	0	0.00	38	6	13.64	-	-	-
CHRFAM7A	0	genome.wustl.edu	37	15	30665226	30665226	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	15	30665226	30665226	C	T	SNP	CHRFAM7A	ENST00000299847	human	ensembl	69_37n	-1	known	missense	c.283	p.A95T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	-	no_errors	CHRFAM7A	HGNC	ENSG00000166664	55	0	0.00	41	11	21.15	-	-	-
CNGA2	0	genome.wustl.edu	37	X	150911871	150911871	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	X	150911871	150911871	C	G	SNP	CNGA2	ENST00000329903	human	ensembl	69_37n	+1	known	missense	c.896	p.S299C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862	61	0	0.00	43	12	21.82	-	-	-
COL6A4P1	0	genome.wustl.edu	37	3	15215441	15215441	+	RNA	SNP	G	G	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	15215441	15215441	G	T	SNP	COL6A4P1	ENST00000491915	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.960	-	-	-	no_errors	COL6A4P1	HGNC	ENSG00000230524	53	0	0.00	32	8	20.00	-	-	-
CPT1A	0	genome.wustl.edu	37	11	68552320	68552320	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	68552320	68552320	C	A	SNP	CPT1A	ENST00000265641	human	ensembl	69_37n	-1	known	missense	c.1126	p.G376W	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	39	0	0.00	42	7	14.29	-	-	-
DDX11L9	0	genome.wustl.edu	37	15	102516835	102516835	+	RNA	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	15	102516835	102516835	C	T	SNP	DDX11L9	ENST00000559159	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	DDX11L9	HGNC	ENSG00000248472	19	0	0.00	5	3	37.50	-	-	-
EFCAB5	0	genome.wustl.edu	37	17	28405362	28405363	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	17	28405362	28405363	GT	-	DEL	EFCAB5	ENST00000394835	human	ensembl	69_37n	+1	known	frame_shift_del	c.2867_2868	p.V957fs	0.238:0.000	NULL	pfscan_EF_HAND_2	-	no_errors	EFCAB5	HGNC	ENSG00000176927	51	0	0.00	32	7	17.95	-	-	-
EHMT1	0	genome.wustl.edu	37	9	140728964	140728964	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	140728964	140728964	G	C	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	+1	known	missense	c.3704	p.G1235A	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	71	0	0.00	59	10	14.49	-	-	-
EML5	0	genome.wustl.edu	37	14	89163200	89163200	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	89163200	89163200	C	T	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.2335	p.D779N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	55	0	0.00	36	8	18.18	-	-	-
FAM72B	0	genome.wustl.edu	37	1	120854498	120854498	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	120854498	120854498	A	G	SNP	FAM72B	ENST00000369390	human	ensembl	69_37n	+1	known	missense	c.362	p.N121S	1.000	NULL	NULL	-	no_errors	FAM72B	HGNC	ENSG00000188610	264	0	0.00	127	21	14.19	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40357467	40357467	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	19	40357467	40357467	C	G	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	missense	c.15846	p.Q5282H	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	48	0	0.00	36	13	26.53	-	-	-
GABRD	0	genome.wustl.edu	37	1	1956838	1956838	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	1956838	1956838	A	G	SNP	GABRD	ENST00000378585	human	ensembl	69_37n	+1	known	missense	c.247	p.M83V	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAd_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRD	HGNC	ENSG00000187730	38	0	0.00	34	6	15.00	-	-	-
GALNT2	0	genome.wustl.edu	37	1	230415130	230415130	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	230415130	230415130	G	A	SNP	GALNT2	ENST00000366672	human	ensembl	69_37n	+1	known	missense	c.1642	p.G548R	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641	55	0	0.00	43	8	15.69	-	-	-
GFPT2	0	genome.wustl.edu	37	5	179731905	179731905	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	179731905	179731905	C	T	SNP	GFPT2	ENST00000253778	human	ensembl	69_37n	-1	known	missense	c.1709	p.G570D	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459	27	0	0.00	30	4	11.76	-	-	-
GLUL	0	genome.wustl.edu	37	1	182356328	182356328	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	182356328	182356328	A	G	SNP	GLUL	ENST00000311223	human	ensembl	69_37n	-1	known	missense	c.266	p.F89S	1.000	pfam_Gln_synt_beta,superfamily_Gln_synt_beta	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	40	0	0.00	47	6	11.32	-	-	-
GRHL2	0	genome.wustl.edu	37	8	102611287	102611287	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	8	102611287	102611287	G	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	+1	known	missense	c.1006	p.D336Y	1.000	pfam_CP2	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	79	0	0.00	62	9	12.68	-	-	-
GUSBP5	0	genome.wustl.edu	37	4	144481165	144481165	+	RNA	SNP	T	T	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	4	144481165	144481165	T	G	SNP	GUSBP5	ENST00000509369	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	GUSBP5	HGNC	ENSG00000236296	36	0	0.00	50	8	13.79	-	-	-
HPS3	0	genome.wustl.edu	37	3	148877950	148877950	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	148877950	148877950	A	T	SNP	HPS3	ENST00000296051	human	ensembl	69_37n	+1	known	missense	c.1990	p.R664W	0.003	pirsf_BLOC-2_complex_Hps3_subunit	pirsf_BLOC-2_complex_Hps3_subunit	-	no_errors	HPS3	HGNC	ENSG00000163755	75	0	0.00	51	10	16.39	-	-	-
HRAS	0	genome.wustl.edu	37	11	534286	534286	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	534286	534286	C	G	SNP	HRAS	ENST00000311189	human	ensembl	69_37n	-1	known	missense	c.37	p.G13R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Fe2_transport_prot_B_N,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	HRAS	HGNC	ENSG00000174775	59	0	0.00	45	30	40.00	-	-	-
HSPB11	0	genome.wustl.edu	37	1	54387380	54387380	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	54387380	54387380	C	A	SNP	HSPB11	ENST00000194214	human	ensembl	69_37n	-1	known	missense	c.379	p.A127S	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	-	no_errors	HSPB11	HGNC	ENSG00000081870	33	0	0.00	41	8	16.33	-	-	-
INADL	0	genome.wustl.edu	37	1	62374109	62374109	+	Silent	SNP	A	A	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	62374109	62374109	A	G	SNP	INADL	ENST00000371158	human	ensembl	69_37n	+1	known	silent	c.3447	p.G1149	0.953	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849	79	0	0.00	69	16	18.82	-	-	-
IQCE	0	genome.wustl.edu	37	7	2617916	2617916	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	7	2617916	2617916	C	T	SNP	IQCE	ENST00000402050	human	ensembl	69_37n	+1	known	missense	c.506	p.T169M	0.955	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCE	HGNC	ENSG00000106012	42	0	0.00	51	7	12.07	-	-	-
KDM3A	0	genome.wustl.edu	37	2	86709793	86709793	+	Silent	SNP	T	T	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	2	86709793	86709793	T	C	SNP	KDM3A	ENST00000312912	human	ensembl	69_37n	+1	known	silent	c.2898	p.F966	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548	42	0	0.00	38	7	15.56	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118221920	118221920	+	Silent	SNP	G	G	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	X	118221920	118221920	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	silent	c.3273	p.T1091	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	57	0	0.00	21	6	22.22	-	-	-
LAMA1	0	genome.wustl.edu	37	18	6943262	6943262	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	18	6943262	6943262	C	G	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.8984	p.G2995A	0.999	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	137	0	0.00	91	22	19.47	-	-	-
MAP4	0	genome.wustl.edu	37	3	47898938	47898938	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	47898938	47898938	T	C	SNP	MAP4	ENST00000360240	human	ensembl	69_37n	-1	known	missense	c.3131	p.N1044S	1.000	pfam_Tau/MAP_tubulin-bd_rpt	pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849	31	0	0.00	43	5	10.42	-	-	-
MAVS	0	genome.wustl.edu	37	20	3845133	3845133	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	20	3845133	3845133	G	T	SNP	MAVS	ENST00000428216	human	ensembl	69_37n	+1	known	missense	c.856	p.G286W	0.000	NULL	NULL	-	no_errors	MAVS	HGNC	ENSG00000088888	42	0	0.00	47	7	12.96	-	-	-
MDN1	0	genome.wustl.edu	37	6	90383931	90383931	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	6	90383931	90383931	C	A	SNP	MDN1	ENST00000369393	human	ensembl	69_37n	-1	known	missense	c.13139	p.W4380L	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159	34	0	0.00	28	5	15.15	-	-	-
MIR1257	0	genome.wustl.edu	37	20	60528653	60528653	+	RNA	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	20	60528653	60528653	C	T	SNP	MIR1257	ENST00000408490	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	MIR1257	HGNC	ENSG00000221417	29	0	0.00	24	4	14.29	-	-	-
MTA2	0	genome.wustl.edu	37	11	62365548	62365548	+	Silent	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	62365548	62365548	C	T	SNP	MTA2	ENST00000278823	human	ensembl	69_37n	-1	known	silent	c.438	p.E146	1.000	pfscan_ELM2_dom	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480	78	0	0.00	65	8	10.96	-	-	-
NALCN	0	genome.wustl.edu	37	13	101755600	101755600	+	Silent	SNP	G	G	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	13	101755600	101755600	G	A	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.2980	p.L994	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	49	0	0.00	18	4	18.18	-	-	-
ODZ1	0	genome.wustl.edu	37	X	123539064	123539064	+	Silent	SNP	A	A	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	X	123539064	123539064	A	C	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.5208	p.T1736	0.302	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	35	0	0.00	34	7	17.07	-	-	-
OR8K3	0	genome.wustl.edu	37	11	56086127	56086127	+	Silent	SNP	C	C	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	56086127	56086127	C	A	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	+1	known	silent	c.345	p.L115	0.041	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	59	0	0.00	36	6	14.29	-	-	-
PCDHB11	0	genome.wustl.edu	37	5	140580562	140580563	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	140580562	140580563	AG	-	DEL	PCDHB11	ENST00000354757	human	ensembl	69_37n	+1	known	frame_shift_del	c.1215_1216	p.R407fs	0.000:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	89	0	0.00	63	7	10.00	-	-	-
PCDHB7	0	genome.wustl.edu	37	5	140553974	140553974	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	140553974	140553974	G	C	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	+1	known	missense	c.1558	p.D520H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	185	0	0.00	145	21	12.65	-	-	-
PCSK5	0	genome.wustl.edu	37	9	78722166	78722166	+	Splice_Site	SNP	G	G	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	78722166	78722166	G	C	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	+1	known	splice_site	c.1108-1	e9-1	1.000	-	-	-	no_errors	PCSK5	HGNC	ENSG00000099139	24	0	0.00	16	6	27.27	-	-	-
POGLUT1	0	genome.wustl.edu	37	3	119198942	119198942	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	119198942	119198942	G	C	SNP	POGLUT1	ENST00000295588	human	ensembl	69_37n	+1	known	missense	c.501	p.W167C	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389	89	0	0.00	78	9	10.34	-	-	-
POM121C	0	genome.wustl.edu	37	7	75051419	75051419	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	7	75051419	75051419	C	T	SNP	POM121C	ENST00000257665	human	ensembl	69_37n	-1	known	missense	c.2842	p.A948T	0.005	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213	48	0	0.00	24	3	11.11	-	-	-
PPBP	0	genome.wustl.edu	37	4	74853801	74853801	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	4	74853801	74853801	G	A	SNP	PPBP	ENST00000296028	human	ensembl	69_37n	-1	known	missense	c.20	p.T7I	0.002	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	PPBP	HGNC	ENSG00000163736	47	0	0.00	55	8	12.70	-	-	-
PSMC6	0	genome.wustl.edu	37	14	53184802	53184802	+	Nonsense_Mutation	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	53184802	53184802	C	G	SNP	PSMC6	ENST00000556813	human	ensembl	69_37n	+1	novel	nonsense	c.531	p.Y177*	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PSMC6	HGNC	ENSG00000100519	51	0	0.00	30	5	14.29	-	-	-
RALGAPA1	0	genome.wustl.edu	37	14	36159078	36159078	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	36159078	36159078	C	A	SNP	RALGAPA1	ENST00000258840	human	ensembl	69_37n	-1	known	missense	c.2539	p.D847Y	1.000	NULL	pfam_Rap_GAP,superfamily_ARM-type_fold,pfscan_Rap_GAP	-	no_errors	RALGAPA1	HGNC	ENSG00000174373	49	0	0.00	38	5	11.63	-	-	-
RNPC3	0	genome.wustl.edu	37	1	104093607	104093607	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	104093607	104093607	C	G	SNP	RNPC3	ENST00000423855	human	ensembl	69_37n	+1	known	missense	c.1406	p.A469G	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPC3	HGNC	ENSG00000185946	43	0	0.00	27	8	22.86	-	-	-
SEMA3B	0	genome.wustl.edu	37	3	50308521	50308521	+	RNA	SNP	G	G	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	3	50308521	50308521	G	T	SNP	SEMA3B	ENST00000316347	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	SEMA3B	HGNC	ENSG00000012171	39	0	0.00	30	4	11.76	-	-	-
SLC39A7	0	genome.wustl.edu	37	6	33168855	33168855	+	RNA	SNP	T	T	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	6	33168855	33168855	T	A	SNP	SLC39A7	ENST00000496894	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC39A7	HGNC	ENSG00000112473	49	0	0.00	36	4	10.00	-	-	-
SOHLH1	0	genome.wustl.edu	37	9	138590846	138590846	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	9	138590846	138590846	C	G	SNP	SOHLH1	ENST00000425225	human	ensembl	69_37n	-1	known	missense	c.192	p.E64D	0.879	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	SOHLH1	HGNC	ENSG00000165643	53	0	0.00	62	10	13.89	-	-	-
SPEF2	0	genome.wustl.edu	37	5	35694435	35694435	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	5	35694435	35694435	T	G	SNP	SPEF2	ENST00000356031	human	ensembl	69_37n	+1	known	missense	c.1945	p.L649V	0.000	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582	98	0	0.00	52	10	16.13	-	-	-
SPTLC2	0	genome.wustl.edu	37	14	78028748	78028748	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	78028748	78028748	T	C	SNP	SPTLC2	ENST00000216484	human	ensembl	69_37n	-1	known	missense	c.841	p.K281E	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SPTLC2	HGNC	ENSG00000100596	56	0	0.00	37	10	21.28	-	-	-
SUGP2	0	genome.wustl.edu	37	19	19136590	19136590	+	Silent	SNP	C	C	G			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	19	19136590	19136590	C	G	SNP	SUGP2	ENST00000337018	human	ensembl	69_37n	-1	known	silent	c.567	p.R189	0.507	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607	43	0	0.00	19	7	26.92	-	-	-
TCEA1	0	genome.wustl.edu	37	8	54879688	54879688	+	RNA	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	8	54879688	54879688	C	T	SNP	TCEA1	ENST00000521086	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.094	-	-	-	no_errors	TCEA1	HGNC	ENSG00000187735	24	0	0.00	24	7	22.58	-	-	-
TDRD5	0	genome.wustl.edu	37	1	179603712	179603712	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	179603712	179603712	C	T	SNP	TDRD5	ENST00000444136	human	ensembl	69_37n	+1	known	missense	c.1247	p.P416L	0.550	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782	52	0	0.00	36	8	18.18	-	-	-
TMCO4	0	genome.wustl.edu	37	1	20082237	20082237	+	Silent	SNP	T	T	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	20082237	20082237	T	C	SNP	TMCO4	ENST00000294543	human	ensembl	69_37n	-1	known	silent	c.405	p.R135	1.000	NULL	pfam_DUF726,pfam_DUF900_hydrolase	-	no_errors	TMCO4	HGNC	ENSG00000162542	58	0	0.00	32	7	17.95	-	-	-
TP53	0	genome.wustl.edu	37	17	7578222	7578223	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	17	7578222	7578223	TC	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.627_626	p.R209fs	0.000:0.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	69	0	0.00	30	6	16.67	-	-	-
TSPAN1	0	genome.wustl.edu	37	1	46651256	46651256	+	RNA	SNP	G	G	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	1	46651256	46651256	G	T	SNP	TSPAN1	ENST00000470318	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	TSPAN1	HGNC	ENSG00000117472	65	0	0.00	63	13	17.11	-	-	-
TSPAN12	0	genome.wustl.edu	37	7	120496782	120496782	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	7	120496782	120496782	G	C	SNP	TSPAN12	ENST00000222747	human	ensembl	69_37n	-1	known	missense	c.36	p.C12W	1.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN12	HGNC	ENSG00000106025	44	0	0.00	53	10	15.87	-	-	-
VRTN	0	genome.wustl.edu	37	14	74824018	74824018	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	14	74824018	74824018	G	A	SNP	VRTN	ENST00000256362	human	ensembl	69_37n	+1	known	missense	c.532	p.A178T	1.000	NULL	pfam_Transposase_8	-	no_errors	VRTN	HGNC	ENSG00000133980	56	0	0.00	54	7	11.48	-	-	-
XYLT2	0	genome.wustl.edu	37	17	48433607	48433607	+	Silent	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	17	48433607	48433607	C	T	SNP	XYLT2	ENST00000017003	human	ensembl	69_37n	+1	known	silent	c.1467	p.D489	1.000	NULL	pfam_XylT_met,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532	42	0	0.00	28	5	15.15	-	-	-
ZBED5	0	genome.wustl.edu	37	11	10875493	10875493	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	10875493	10875493	C	T	SNP	ZBED5	ENST00000413761	human	ensembl	69_37n	-1	putative	missense	c.1000	p.E334K	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,pfscan_Znf_BED_prd	-	no_errors	ZBED5	HGNC	ENSG00000236287	51	0	0.00	23	14	37.84	-	-	-
ZFP91	0	genome.wustl.edu	37	11	58347039	58347039	+	Silent	SNP	G	G	A			TCGA-AR-A5QQ-01A-11D-A28B-09	TCGA-AR-A5QQ-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ead4a158-677a-4f8b-99a2-536f0ec76469	b3ee2a63-4fe7-4c96-b0a3-3e9b1c9bf579	11	58347039	58347039	G	A	SNP	ZFP91	ENST00000316059	human	ensembl	69_37n	+1	known	silent	c.285	p.Q95	0.959	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660	12	0	0.00	10	4	28.57	-	-	-
