Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BGN	0	genome.wustl.edu	37	X	152771478	152771478	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	X	152771478	152771478	G	A	SNP	BGN	ENST00000331595	human	ensembl	69_37n	+1	known	missense	c.509	p.R170H	0.857	smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	BGN	HGNC	ENSG00000182492	93	0	0.00	46	27	36.99	-	-	-
BRSK2	0	genome.wustl.edu	37	11	1471018	1471018	+	Silent	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	11	1471018	1471018	C	T	SNP	BRSK2	ENST00000382179	human	ensembl	69_37n	+1	known	silent	c.1377	p.I459	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	BRSK2	HGNC	ENSG00000174672	78	0	0.00	11	21	65.62	-	-	-
C6orf118	0	genome.wustl.edu	37	6	165706931	165706931	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	6	165706931	165706931	G	T	SNP	C6orf118	ENST00000230301	human	ensembl	69_37n	-1	known	missense	c.1091	p.A364E	0.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539	409	1	0.24	206	114	35.62	-	-	-
CASP6	0	genome.wustl.edu	37	4	110610590	110610590	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	4	110610590	110610590	G	A	SNP	CASP6	ENST00000265164	human	ensembl	69_37n	-1	known	nonsense	c.778	p.R260*	0.997	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10	pfam_Pept_C14_cat,smart_Pept_C14_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP6	HGNC	ENSG00000138794	195	0	0.00	115	70	37.84	-	-	-
CDKL1	0	genome.wustl.edu	37	14	50862547	50862547	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	14	50862547	50862547	A	T	SNP	CDKL1	ENST00000395834	human	ensembl	69_37n	-1	known	missense	c.43	p.S15T	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CDKL1	HGNC	ENSG00000100490	232	0	0.00	161	111	40.81	-	-	-
CSAG1	0	genome.wustl.edu	37	X	151908833	151908833	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	X	151908833	151908833	G	C	SNP	CSAG1	ENST00000370287	human	ensembl	69_37n	+1	known	missense	c.72	p.W24C	0.000	NULL	NULL	-	no_errors	CSAG1	HGNC	ENSG00000198930	756	0	0.00	412	259	38.60	-	-	-
CSMD3	0	genome.wustl.edu	37	8	113237127	113237127	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	8	113237127	113237127	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.10997	p.S3666L	1.000	NULL	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	1062	0	0.00	1579	285	15.27	-	-	-
GOLGA8G	0	genome.wustl.edu	37	15	28771127	28771127	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	15	28771127	28771127	C	G	SNP	GOLGA8G	ENST00000416855	human	ensembl	69_37n	-1	known	missense	c.1177	p.E393Q	1.000	NULL	NULL	-	no_errors	GOLGA8G	HGNC	ENSG00000183629	177	0	0.00	127	36	22.09	-	-	-
GRAMD2	0	genome.wustl.edu	37	15	72456002	72456002	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	15	72456002	72456002	C	T	SNP	GRAMD2	ENST00000309731	human	ensembl	69_37n	-1	known	missense	c.697	p.V233M	0.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD2	HGNC	ENSG00000175318	226	0	0.00	119	89	42.79	-	-	-
HCAR2	0	genome.wustl.edu	37	12	123187710	123187710	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	12	123187710	123187710	C	G	SNP	HCAR2	ENST00000328880	human	ensembl	69_37n	-1	known	missense	c.121	p.G41R	1.000	prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	HCAR2	HGNC	ENSG00000182782	240	0	0.00	150	92	38.02	-	-	-
HMG20A	0	genome.wustl.edu	37	15	77759649	77759649	+	Silent	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	15	77759649	77759649	G	A	SNP	HMG20A	ENST00000336216	human	ensembl	69_37n	+1	known	silent	c.450	p.Q150	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMG20A	HGNC	ENSG00000140382	118	0	0.00	73	40	35.40	-	-	-
HS3ST2	0	genome.wustl.edu	37	16	22926628	22926628	+	Silent	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	16	22926628	22926628	C	T	SNP	HS3ST2	ENST00000261374	human	ensembl	69_37n	+1	known	silent	c.849	p.G283	0.962	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST2	HGNC	ENSG00000122254	108	0	0.00	66	31	31.00	-	-	-
HSPA9	0	genome.wustl.edu	37	5	137892185	137892185	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	5	137892185	137892185	G	C	SNP	HSPA9	ENST00000297185	human	ensembl	69_37n	-1	known	missense	c.1918	p.L640V	1.000	pfam_Hsp_70_fam,tigrfam_Chaperone_DnaK	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013	518	0	0.00	331	174	34.32	-	-	-
ICOSLG	0	genome.wustl.edu	37	21	45656914	45656914	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	21	45656914	45656914	C	T	SNP	ICOSLG	ENST00000344330	human	ensembl	69_37n	-1	known	missense	c.242	p.R81Q	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	ICOSLG	HGNC	ENSG00000160223	317	1	0.31	169	125	42.37	-	-	-
KALRN	0	genome.wustl.edu	37	3	124017740	124017740	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	124017740	124017740	C	A	SNP	KALRN	ENST00000360013	human	ensembl	69_37n	+1	known	missense	c.1066	p.H356N	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	400	1	0.25	219	123	35.96	-	-	-
KCNN2	0	genome.wustl.edu	37	5	113698868	113698868	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	5	113698868	113698868	G	C	SNP	KCNN2	ENST00000264773	human	ensembl	69_37n	+1	known	missense	c.396	p.K132N	1.000	pfam_K_chnl_Ca-activ_SK,prints_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709	33	0	0.00	13	14	51.85	-	-	-
KIAA1524	0	genome.wustl.edu	37	3	108276094	108276094	+	Silent	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	108276094	108276094	C	T	SNP	KIAA1524	ENST00000295746	human	ensembl	69_37n	-1	known	silent	c.2181	p.L727	0.994	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1524	HGNC	ENSG00000163507	500	0	0.00	250	137	35.40	-	-	-
KIAA2018	0	genome.wustl.edu	37	3	113377798	113377798	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	113377798	113377798	C	A	SNP	KIAA2018	ENST00000316407	human	ensembl	69_37n	-1	known	missense	c.2731	p.D911Y	1.000	NULL	pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd	-	no_errors	KIAA2018	HGNC	ENSG00000176542	433	0	0.00	250	147	36.93	-	-	-
LBR	0	genome.wustl.edu	37	1	225600340	225600340	+	Silent	SNP	A	A	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	1	225600340	225600340	A	G	SNP	LBR	ENST00000272163	human	ensembl	69_37n	-1	known	silent	c.900	p.Y300	0.955	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815	70	0	0.00	76	28	26.92	-	-	-
LHX5	0	genome.wustl.edu	37	12	113905144	113905144	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	12	113905144	113905144	C	T	SNP	LHX5	ENST00000261731	human	ensembl	69_37n	-1	known	missense	c.758	p.R253Q	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LHX5	HGNC	ENSG00000089116	54	0	0.00	46	7	13.21	-	-	-
MRC2	0	genome.wustl.edu	37	17	60767630	60767630	+	Silent	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	17	60767630	60767630	C	T	SNP	MRC2	ENST00000303375	human	ensembl	69_37n	+1	known	silent	c.3856	p.L1286	0.987	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,prints_AntifreezeII,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	MRC2	HGNC	ENSG00000011028	74	0	0.00	52	20	27.78	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1266823	1266823	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	11	1266823	1266823	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.8722	p.G2908R	0.431	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	177	0	0.00	35	44	55.70	-	-	-
OR5L2	0	genome.wustl.edu	37	11	55595297	55595297	+	Silent	SNP	G	G	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	11	55595297	55595297	G	T	SNP	OR5L2	ENST00000378397	human	ensembl	69_37n	+1	known	silent	c.603	p.L201	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030	632	0	0.00	338	190	35.98	-	-	-
PEX7	0	genome.wustl.edu	37	6	137147540	137147540	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	6	137147540	137147540	C	G	SNP	PEX7	ENST00000318471	human	ensembl	69_37n	+1	known	missense	c.272	p.S91W	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PEX7	HGNC	ENSG00000112357	210	0	0.00	153	90	37.04	-	-	-
PIAS4	0	genome.wustl.edu	37	19	4037695	4037695	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	19	4037695	4037695	C	T	SNP	PIAS4	ENST00000262971	human	ensembl	69_37n	+1	known	missense	c.1355	p.P452L	0.000	NULL	pfam_Znf_MIZ,smart_SAP_DNA-bd,pfscan_Znf_MIZ,pfscan_SAP_DNA-bd	-	no_errors	PIAS4	HGNC	ENSG00000105229	13	0	0.00	11	7	38.89	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	236	0	0.00	139	69	33.17	-	-	-
PLA2G3	0	genome.wustl.edu	37	22	31532969	31532969	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	22	31532969	31532969	A	G	SNP	PLA2G3	ENST00000215885	human	ensembl	69_37n	-1	known	missense	c.1124	p.I375T	0.705	pfam_PLipase_A2_euk,superfamily_PLipase_A2	pfam_PLipase_A2_euk,superfamily_PLipase_A2	-	no_errors	PLA2G3	HGNC	ENSG00000100078	82	0	0.00	31	31	50.00	-	-	-
PTEN	0	genome.wustl.edu	37	10	89653844	89653844	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	10	89653844	89653844	A	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	frame_shift_del	c.142	p.N48fs	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862	301	0	0.00	212	111	34.15	-	-	-
RIOK2	0	genome.wustl.edu	37	5	96503665	96503668	+	Frame_Shift_Del	DEL	AGAA	AGAA	-			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	AGAA	AGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	5	96503665	96503668	AGAA	-	DEL	RIOK2	ENST00000283109	human	ensembl	69_37n	-1	known	frame_shift_del	c.903_900	p.S301fs	0.995:1.000:0.999:0.991	NULL	pfam_RIO-like_kinase,pfam_RIO2_kinase_winged_hlx_N,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase	-	no_errors	RIOK2	HGNC	ENSG00000058729	83	0	0.00	39	20	33.90	-	-	-
RTEL1	0	genome.wustl.edu	37	20	62322279	62322279	+	Silent	SNP	G	G	C			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	20	62322279	62322279	G	C	SNP	RTEL1	ENST00000318100	human	ensembl	69_37n	+1	known	silent	c.2535	p.A845	0.000	NULL	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	27	0	0.00	17	11	39.29	-	-	-
SLC9A8	0	genome.wustl.edu	37	20	48466163	48466163	+	Missense_Mutation	SNP	T	T	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	20	48466163	48466163	T	G	SNP	SLC9A8	ENST00000417961	human	ensembl	69_37n	+1	known	missense	c.480	p.F160L	0.995	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818	671	0	0.00	363	218	37.52	-	-	-
SLCO1B3	0	genome.wustl.edu	37	12	21028168	21028168	+	Splice_Site	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	12	21028168	21028168	G	A	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	+1	known	splice_site	c.728-1	e7-1	0.906	-	-	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	777	0	0.00	524	260	33.16	-	-	-
SMARCC1	0	genome.wustl.edu	37	3	47719705	47719705	+	Silent	SNP	A	A	G			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	3	47719705	47719705	A	G	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	silent	c.1554	p.D518	1.000	pfam_SWIRM,superfamily_Homeodomain-like,pfscan_SWIRM	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	330	0	0.00	85	123	59.13	-	-	-
SNRNP25	0	genome.wustl.edu	37	16	105793	105793	+	Splice_Site	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	16	105793	105793	G	A	SNP	SNRNP25	ENST00000493672	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SNRNP25	HGNC	ENSG00000161981	223	0	0.00	141	78	35.62	-	-	-
SNRPB	0	genome.wustl.edu	37	20	2451335	2451336	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	20	2451335	2451336	-	TG	INS	SNRPB	ENST00000438552	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2_1	p.M1fs	1.000:1.000	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPB	HGNC	ENSG00000125835	118	0	0.00	70	31	30.69	-	-	-
TPI1	0	genome.wustl.edu	37	12	6976710	6976710	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	12	6976710	6976710	C	T	SNP	TPI1	ENST00000229270	human	ensembl	69_37n	+1	known	nonsense	c.91	p.Q31*	0.995	NULL	pfam_Triosephosphate_isomerase,superfamily_Triosephosphate_isomerase,tigrfam_Triosephosphate_isomerase	-	no_errors	TPI1	HGNC	ENSG00000111669	11	0	0.00	19	9	32.14	-	-	-
UNCX	0	genome.wustl.edu	37	7	1273287	1273287	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	7	1273287	1273287	G	A	SNP	UNCX	ENST00000316333	human	ensembl	69_37n	+1	known	missense	c.406	p.E136K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	UNCX	HGNC	ENSG00000164853	45	0	0.00	31	21	40.38	-	-	-
UNCX	0	genome.wustl.edu	37	7	1273288	1273288	+	Missense_Mutation	SNP	A	A	C			TCGA-B6-A0WW-01A-11D-A10G-09	TCGA-B6-A0WW-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e9d6f59d-7d87-4fda-ab6f-e9c2501b8600	1d66ccf6-8c14-405d-a686-07122687567f	7	1273288	1273288	A	C	SNP	UNCX	ENST00000316333	human	ensembl	69_37n	+1	known	missense	c.407	p.E136A	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	UNCX	HGNC	ENSG00000164853	47	0	0.00	32	21	39.62	-	-	-
