Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA5	0	genome.wustl.edu	37	17	67246096	67246096	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	17	67246096	67246096	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	69_37n	-1	known	missense	c.4718	p.P1573L	1.000	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	32	0	0.00	86	24	21.82	-	-	-
ABHD1	0	genome.wustl.edu	37	2	27351965	27351965	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	2	27351965	27351965	T	C	SNP	ABHD1	ENST00000316470	human	ensembl	69_37n	+1	known	missense	c.428	p.L143P	0.802	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD1	HGNC	ENSG00000143994	38	0	0.00	45	13	22.41	-	-	-
ANKRD35	0	genome.wustl.edu	37	1	145556634	145556634	+	Silent	SNP	A	A	G			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	145556634	145556634	A	G	SNP	ANKRD35	ENST00000355594	human	ensembl	69_37n	+1	known	silent	c.204	p.E68	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD35	HGNC	ENSG00000198483	41	0	0.00	86	12	12.24	-	-	-
ATP11A	0	genome.wustl.edu	37	13	113512469	113512469	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	13	113512469	113512469	C	G	SNP	ATP11A	ENST00000471555	human	ensembl	69_37n	+1	known	missense	c.794	p.A265G	0.958	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_ion-transptr	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP11A	HGNC	ENSG00000068650	46	0	0.00	100	29	22.48	-	-	-
C17orf104	0	genome.wustl.edu	37	17	42744021	42744021	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	17	42744021	42744021	C	A	SNP	C17orf104	ENST00000409122	human	ensembl	69_37n	+1	known	missense	c.742	p.H248N	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336	30	0	0.00	115	49	29.88	-	-	-
CATSPER3	0	genome.wustl.edu	37	5	134347257	134347257	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	134347257	134347257	C	G	SNP	CATSPER3	ENST00000282611	human	ensembl	69_37n	+1	known	missense	c.1141	p.L381V	0.970	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER3	HGNC	ENSG00000152705	20	0	0.00	106	50	31.85	-	-	-
ENSG00000226232	0	genome.wustl.edu	37	16	70010517	70010519	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	16	70010517	70010519	TGT	-	DEL	ENSG00000226232	ENST00000532298	human	ensembl	69_37n	-1	novel	in_frame_del	c.761_759	p.Q253in_frame_del	0.600:0.610:0.620	pfam_NPIP	pfam_NPIP	-	no_errors	RP11-419C5.2	Clone_based_vega_gene	ENSG00000226232	9	0	0.00	8	5	38.46	-	-	-
EPB41	0	genome.wustl.edu	37	1	29344886	29344886	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	1	29344886	29344886	T	-	DEL	EPB41	ENST00000343067	human	ensembl	69_37n	+1	known	frame_shift_del	c.1056	p.F353fs	0.951	pirsf_Band_41_protein,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41	HGNC	ENSG00000159023	34	0	0.00	96	36	27.07	-	-	-
GPX2	0	genome.wustl.edu	37	14	65406536	65406536	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	14	65406536	65406536	C	G	SNP	GPX2	ENST00000389614	human	ensembl	69_37n	-1	known	missense	c.243	p.E81D	1.000	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	-	pseudogene	GPX2	HGNC	ENSG00000176153	37	0	0.00	37	7	15.91	-	-	-
GUSBP11	0	genome.wustl.edu	37	22	24037232	24037232	+	RNA	SNP	G	G	A			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	22	24037232	24037232	G	A	SNP	GUSBP11	ENST00000421064	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GUSBP11	HGNC	ENSG00000228315	25	0	0.00	121	29	19.33	-	-	-
KLF4	0	genome.wustl.edu	37	9	110249348	110249348	+	Missense_Mutation	SNP	T	T	G			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	9	110249348	110249348	T	G	SNP	KLF4	ENST00000374672	human	ensembl	69_37n	-1	known	missense	c.1225	p.K409Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF4	HGNC	ENSG00000136826	91	0	0.00	195	234	54.55	-	-	-
MAGI2	0	genome.wustl.edu	37	7	77789414	77789414	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	7	77789414	77789414	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	69_37n	-1	known	missense	c.2773	p.R925C	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_Rsp5_WWP,pfam_Guanylate_kin,superfamily_PDZ,superfamily_WW_Rsp5_WWP,smart_PDZ,smart_Guanylate_kin/L-typ_Ca_channel,smart_WW_Rsp5_WWP,pfscan_PDZ,pfscan_WW_Rsp5_WWP,pfscan_Guanylate_kin	-	no_errors	MAGI2	HGNC	ENSG00000187391	39	0	0.00	96	37	27.82	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56176938	56176938	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	56176938	56176938	T	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.2208	p.Y736fs	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	99	0	0.00	178	81	30.57	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1268064	1268064	+	Silent	SNP	C	C	T			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	11	1268064	1268064	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.9963	p.A3321	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	9	0	0.00	100	48	32.43	-	-	-
OR8K3	0	genome.wustl.edu	37	11	56085814	56085814	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	11	56085814	56085814	A	T	SNP	OR8K3	ENST00000312711	human	ensembl	69_37n	+1	known	missense	c.32	p.E11V	0.896	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	44	0	0.00	107	33	23.57	-	-	-
PCDHGA2	0	genome.wustl.edu	37	5	140720953	140720953	+	Silent	SNP	G	G	A			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	5	140720953	140720953	G	A	SNP	PCDHGA2	ENST00000394576	human	ensembl	69_37n	+1	known	silent	c.2415	p.T805	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	42	0	0.00	82	19	18.81	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	C			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	3	178936095	178936095	A	C	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1637	p.Q546P	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	31	0	0.00	75	36	32.43	-	-	-
RET	0	genome.wustl.edu	37	10	43609956	43609956	+	Silent	SNP	G	G	A			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	10	43609956	43609956	G	A	SNP	RET	ENST00000355710	human	ensembl	69_37n	+1	known	silent	c.1908	p.T636	0.628	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	25	0	0.00	40	10	20.00	-	-	-
TLE3	0	genome.wustl.edu	37	15	70347454	70347454	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	15	70347454	70347454	G	A	SNP	TLE3	ENST00000560525	human	ensembl	69_37n	-1	known	missense	c.1733	p.A578V	1.000	superfamily_WD40_repeat_dom	pfam_Groucho/TLE_N,superfamily_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TLE3	HGNC	ENSG00000140332	68	0	0.00	39	18	31.58	-	-	-
XXYLT1	0	genome.wustl.edu	37	3	194877239	194877239	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A1KI-01A-11D-A14K-09	TCGA-B6-A1KI-10A-01W-A16I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d9374702-8fc6-48c0-bec5-5c1105e641dc	12983a0c-2f74-4c87-af64-048fbfea9ddd	3	194877239	194877239	A	G	SNP	XXYLT1	ENST00000310380	human	ensembl	69_37n	-1	known	missense	c.724	p.F242L	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	XXYLT1	HGNC	ENSG00000173950	70	0	0.00	68	10	12.82	-	-	-
