Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTL6A	0	genome.wustl.edu	37	3	179291212	179291212	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	179291212	179291212	C	G	SNP	ACTL6A	ENST00000487978	human	ensembl	69_37n	+1	known	nonsense	c.317	p.S106*	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACTL6A	HGNC	ENSG00000136518	209	0	0.00	215	48	17.91	-	-	-
ALOXE3	0	genome.wustl.edu	37	17	8000125	8000125	+	Splice_Site	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	8000125	8000125	C	G	SNP	ALOXE3	ENST00000318227	human	ensembl	69_37n	-1	known	splice_site	c.2353-1	e16-1	1.000	-	-	-	no_errors	ALOXE3	HGNC	ENSG00000179148	436	1	0.23	47	42	47.19	-	-	-
ANO2	0	genome.wustl.edu	37	12	5936967	5936967	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	5936967	5936967	C	T	SNP	ANO2	ENST00000356134	human	ensembl	69_37n	-1	known	missense	c.851	p.R284H	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617	45	0	0.00	66	8	10.81	-	-	-
APEX2	0	genome.wustl.edu	37	X	55033173	55033173	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	55033173	55033173	G	A	SNP	APEX2	ENST00000374987	human	ensembl	69_37n	+1	known	missense	c.862	p.D288N	0.048	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	pfam_Endo/exonuclease/phosphatase,pfam_Znf_GRF,superfamily_Endo/exonuclease/phosphatase,tigrfam_ExoDNase_III	-	no_errors	APEX2	HGNC	ENSG00000169188	155	1	0.64	50	18	26.47	-	-	-
ATRX	0	genome.wustl.edu	37	X	76890106	76890106	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	76890106	76890106	C	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.4788	p.M1596I	1.000	pfam_SNF2_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	231	0	0.00	332	84	20.19	-	-	-
ATRX	0	genome.wustl.edu	37	X	76940061	76940061	+	Silent	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	76940061	76940061	C	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	silent	c.687	p.L229	1.000	superfamily_Znf_FYVE_PHD	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	52	0	0.00	51	12	19.05	-	-	-
BBS10	0	genome.wustl.edu	37	12	76740150	76740150	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	76740150	76740150	G	A	SNP	BBS10	ENST00000393262	human	ensembl	69_37n	-1	known	missense	c.1615	p.P539S	0.001	superfamily_Cpn60/TCP-1	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1	-	no_errors	BBS10	HGNC	ENSG00000179941	191	0	0.00	253	225	47.07	-	-	-
BTK	0	genome.wustl.edu	37	X	100614283	100614283	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	100614283	100614283	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.892	p.E298K	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	198	0	0.00	120	40	25.00	-	-	-
C12orf42	0	genome.wustl.edu	37	12	103695971	103695971	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	103695971	103695971	G	A	SNP	C12orf42	ENST00000378113	human	ensembl	69_37n	-1	known	missense	c.998	p.S333L	0.000	NULL	NULL	-	no_errors	C12orf42	HGNC	ENSG00000179088	14	0	0.00	17	6	26.09	-	-	-
C14orf102	0	genome.wustl.edu	37	14	90756754	90756754	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	14	90756754	90756754	G	-	DEL	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	frame_shift_del	c.2040	p.F680fs	0.000	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	118	0	0.00	69	39	34.82	-	-	-
C14orf102	0	genome.wustl.edu	37	14	90756755	90756755	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	14	90756755	90756755	A	T	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	missense	c.2039	p.F680Y	0.002	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	120	0	0.00	71	40	36.04	-	-	-
C5	0	genome.wustl.edu	37	9	123722615	123722615	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	123722615	123722615	G	A	SNP	C5	ENST00000223642	human	ensembl	69_37n	-1	known	missense	c.4589	p.A1530V	1.000	superfamily_TIMP-like_OB-fold	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C5	HGNC	ENSG00000106804	179	0	0.00	187	63	25.10	-	-	-
C9orf43	0	genome.wustl.edu	37	9	116175869	116175869	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	116175869	116175869	G	C	SNP	C9orf43	ENST00000288462	human	ensembl	69_37n	+1	known	missense	c.96	p.E32D	0.972	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	175	0	0.00	81	20	19.80	-	-	-
CBLB	0	genome.wustl.edu	37	3	105439088	105439088	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	105439088	105439088	C	T	SNP	CBLB	ENST00000264122	human	ensembl	69_37n	-1	known	missense	c.1210	p.D404N	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Adaptor_Cbl_N_hlx,pfam_Adaptor_Cbl_SH2-like,pfam_Adaptor_Cbl_EF_hand-like,pfam_Znf_C3HC4_RING-type,pfam_UBA/transl_elong_EF1B_N,superfamily_Adaptor_Cbl_N_hlx,superfamily_UBA-like,smart_Znf_RING,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RING	-	no_errors	CBLB	HGNC	ENSG00000114423	115	0	0.00	92	16	14.81	-	-	-
CDKN1B	0	genome.wustl.edu	37	12	12870853	12870853	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	12870853	12870853	C	A	SNP	CDKN1B	ENST00000228872	human	ensembl	69_37n	+1	known	nonsense	c.80	p.S27*	1.000	NULL	pfam_CDI	-	no_errors	CDKN1B	HGNC	ENSG00000111276	37	0	0.00	58	24	29.27	-	-	-
CEMP1	0	genome.wustl.edu	37	16	2580833	2580833	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	16	2580833	2580833	C	G	SNP	CEMP1	ENST00000382350	human	ensembl	69_37n	-1	known	missense	c.242	p.R81P	0.000	NULL	NULL	-	no_errors	CEMP1	HGNC	ENSG00000205923	33	0	0.00	32	17	34.69	-	-	-
CHPT1	0	genome.wustl.edu	37	12	102117533	102117533	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	102117533	102117533	C	T	SNP	CHPT1	ENST00000229266	human	ensembl	69_37n	+1	known	nonsense	c.973	p.Q325*	1.000	pirsf_CHOPT	pfam_CDP-OH_P_trans,pirsf_CHOPT	-	no_errors	CHPT1	HGNC	ENSG00000111666	102	0	0.00	301	134	30.80	-	-	-
CNTN6	0	genome.wustl.edu	37	3	1424982	1424982	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	1424982	1424982	C	T	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	+1	known	nonsense	c.2407	p.Q803*	0.994	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	215	0	0.00	199	96	32.54	-	-	-
CWH43	0	genome.wustl.edu	37	4	49030718	49030718	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	4	49030718	49030718	C	G	SNP	CWH43	ENST00000226432	human	ensembl	69_37n	+1	known	missense	c.1339	p.L447V	0.939	superfamily_Endo/exonuclease/phosphatase	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	265	0	0.00	166	47	21.96	-	-	-
CYP4F11	0	genome.wustl.edu	37	19	16034795	16034795	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	19	16034795	16034795	G	C	SNP	CYP4F11	ENST00000248041	human	ensembl	69_37n	-1	known	missense	c.745	p.L249V	0.820	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	189	0	0.00	103	23	18.25	-	-	-
DNAJC9	0	genome.wustl.edu	37	10	75003169	75003169	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	10	75003169	75003169	C	G	SNP	DNAJC9	ENST00000372950	human	ensembl	69_37n	-1	known	missense	c.772	p.E258Q	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC9	HGNC	ENSG00000213551	102	0	0.00	190	110	36.67	-	-	-
EGFR	0	genome.wustl.edu	37	7	55223635	55223635	+	Silent	SNP	C	C	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	7	55223635	55223635	C	A	SNP	EGFR	ENST00000275493	human	ensembl	69_37n	+1	known	silent	c.1002	p.R334	0.993	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	EGFR	HGNC	ENSG00000146648	37	0	0.00	16	6	27.27	-	-	-
FRMPD4	0	genome.wustl.edu	37	X	12734858	12734858	+	Silent	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	12734858	12734858	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	+1	known	silent	c.2280	p.L760	0.972	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	228	0	0.00	110	19	14.62	-	-	-
GPR110	0	genome.wustl.edu	37	6	46977528	46977528	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	6	46977528	46977528	C	A	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.1643	p.G548V	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	266	0	0.00	85	74	46.54	-	-	-
GRK1	0	genome.wustl.edu	37	13	114324090	114324093	+	Frame_Shift_Del	DEL	TCTG	TCTG	-			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	TCTG	TCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	13	114324090	114324093	TCTG	-	DEL	GRK1	ENST00000335678	human	ensembl	69_37n	+1	known	frame_shift_del	c.788_791	p.C264fs	1.000:1.000:1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Regulat_G_prot_signal,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_GPCR_kinase,pfscan_Regulat_G_prot_signal,pfscan_Prot_kinase_cat_dom	-	no_errors	GRK1	HGNC	ENSG00000185974	127	0	0.00	152	49	24.14	-	-	-
IQUB	0	genome.wustl.edu	37	7	123152129	123152129	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	7	123152129	123152129	G	A	SNP	IQUB	ENST00000324698	human	ensembl	69_37n	-1	known	missense	c.266	p.S89L	0.000	NULL	pfam_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675	358	0	0.00	280	56	16.67	-	-	-
KCNB2	0	genome.wustl.edu	37	8	73849283	73849283	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	8	73849283	73849283	G	A	SNP	KCNB2	ENST00000523207	human	ensembl	69_37n	+1	known	missense	c.1693	p.E565K	0.597	pfam_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv2.2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	167	1	0.60	123	26	17.45	-	-	-
KIAA1210	0	genome.wustl.edu	37	X	118223589	118223589	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	118223589	118223589	C	G	SNP	KIAA1210	ENST00000402510	human	ensembl	69_37n	-1	known	missense	c.1604	p.R535T	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	885	0	0.00	568	266	31.86	-	-	-
LAMTOR2	0	genome.wustl.edu	37	1	156024726	156024726	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	1	156024726	156024726	A	G	SNP	LAMTOR2	ENST00000368302	human	ensembl	69_37n	+1	known	missense	c.46	p.T16A	1.000	pfam_Dynein_light-rel,smart_Dynein_light-rel	pfam_Dynein_light-rel,smart_Dynein_light-rel	-	no_errors	LAMTOR2	HGNC	ENSG00000116586	12	0	0.00	17	10	37.04	-	-	-
LCA5L	0	genome.wustl.edu	37	21	40783710	40783710	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	21	40783710	40783710	C	G	SNP	LCA5L	ENST00000288350	human	ensembl	69_37n	-1	known	missense	c.994	p.E332Q	0.986	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578	72	0	0.00	221	42	15.79	-	-	-
LYZL6	0	genome.wustl.edu	37	17	34264771	34264771	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	34264771	34264771	C	G	SNP	LYZL6	ENST00000293274	human	ensembl	69_37n	-1	known	missense	c.289	p.D97H	0.009	pfam_Glyco_hydro_22,pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	pfam_Glyco_hydro_22,pfam_Lytic_TGlycosylase-like_cat,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL6	HGNC	ENSG00000161572	153	1	0.65	147	29	16.48	-	-	-
MAGEB2	0	genome.wustl.edu	37	X	30237091	30237091	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	30237091	30237091	G	A	SNP	MAGEB2	ENST00000378988	human	ensembl	69_37n	+1	known	missense	c.394	p.V132I	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB2	HGNC	ENSG00000099399	139	0	0.00	165	75	31.25	-	-	-
MAPK1	0	genome.wustl.edu	37	22	22162014	22162014	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	22	22162014	22162014	C	T	SNP	MAPK1	ENST00000215832	human	ensembl	69_37n	-1	known	missense	c.241	p.E81K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_MAPK_ERK1/2,prints_MAPK_ERK3/4	-	no_errors	MAPK1	HGNC	ENSG00000100030	402	0	0.00	266	99	27.12	-	-	-
MRPL45	0	genome.wustl.edu	37	17	36478038	36478038	+	Silent	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	36478038	36478038	G	A	SNP	MRPL45	ENST00000312513	human	ensembl	69_37n	+1	known	silent	c.690	p.R230	0.986	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	pfam_Tim44-related/Ribosome_L45,smart_Tim44-related/Ribosome_L45	-	no_errors	MRPL45	HGNC	ENSG00000174100	279	0	0.00	123	88	41.51	-	-	-
MUS81	0	genome.wustl.edu	37	11	65629461	65629461	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	11	65629461	65629461	C	T	SNP	MUS81	ENST00000524647	human	ensembl	69_37n	+1	known	nonsense	c.289	p.Q97*	0.994	NULL	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_DNA-dir_DNA_pol_X_beta-like_N,smart_ERCC4_domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MUS81	HGNC	ENSG00000172732	10	0	0.00	45	10	17.86	-	-	-
OR10D3	0	genome.wustl.edu	37	11	124056377	124056377	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	11	124056377	124056377	T	C	SNP	OR10D3	ENST00000318666	human	ensembl	69_37n	+1	known	missense	c.401	p.V134A	0.009	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR10D3	HGNC	ENSG00000197309	27	0	0.00	9	11	55.00	-	-	-
PAPPA	0	genome.wustl.edu	37	9	119097272	119097272	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	119097272	119097272	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	+1	known	missense	c.3530	p.A1177V	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	116	0	0.00	20	17	45.95	-	-	-
PCDHB1	0	genome.wustl.edu	37	5	140431164	140431164	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	5	140431164	140431164	G	C	SNP	PCDHB1	ENST00000306549	human	ensembl	69_37n	+1	known	missense	c.109	p.E37Q	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815	156	0	0.00	177	61	25.52	-	-	-
PF4	0	genome.wustl.edu	37	4	74847580	74847580	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	4	74847580	74847580	C	T	SNP	PF4	ENST00000296029	human	ensembl	69_37n	-1	known	missense	c.91	p.A31T	0.380	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXCL8/IL8,prints_Chemokine_CXC	-	no_errors	PF4	HGNC	ENSG00000163737	30	0	0.00	17	5	22.73	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178916944	178916946	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	178916944	178916946	AAG	-	DEL	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	in_frame_del	c.331_333	p.K111in_frame_del	1.000:1.000:1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	61	0	0.00	87	61	40.94	-	-	-
PLD5	0	genome.wustl.edu	37	1	242277235	242277235	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	1	242277235	242277235	C	T	SNP	PLD5	ENST00000536534	human	ensembl	69_37n	-1	known	missense	c.1027	p.A343T	0.979	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287	249	0	0.00	264	42	13.68	-	-	-
PPP2R5E	0	genome.wustl.edu	37	14	63842801	63842801	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	14	63842801	63842801	C	T	SNP	PPP2R5E	ENST00000337537	human	ensembl	69_37n	-1	known	missense	c.1330	p.E444K	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001	632	0	0.00	484	119	19.73	-	-	-
PSMD1	0	genome.wustl.edu	37	2	232035376	232035376	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	2	232035376	232035376	G	A	SNP	PSMD1	ENST00000308696	human	ensembl	69_37n	+1	known	missense	c.2812	p.E938K	1.000	pirsf_26S_Psome_Rpn2	pfam_APC_proteasome,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	422	0	0.00	207	74	26.24	-	-	-
RARB	0	genome.wustl.edu	37	3	25622090	25622090	+	Silent	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	25622090	25622090	C	T	SNP	RARB	ENST00000404969	human	ensembl	69_37n	+1	known	silent	c.684	p.F228	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_Retinoic_acid_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092	217	0	0.00	159	33	17.19	-	-	-
RBMXL3	0	genome.wustl.edu	37	X	114424076	114424076	+	Silent	SNP	C	C	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	X	114424076	114424076	C	A	SNP	RBMXL3	ENST00000424776	human	ensembl	69_37n	+1	known	silent	c.72	p.L24	0.147	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	26	0	0.00	81	50	37.88	-	-	-
RELN	0	genome.wustl.edu	37	7	103301856	103301856	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	7	103301856	103301856	C	T	SNP	RELN	ENST00000424685	human	ensembl	69_37n	-1	known	missense	c.1408	p.G470S	0.971	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Neuraminidase,superfamily_Growth_fac_rcpt,smart_EGF-like,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	284	0	0.00	156	69	30.67	-	-	-
RIF1	0	genome.wustl.edu	37	2	152320040	152320040	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	2	152320040	152320040	G	A	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	+1	known	missense	c.4006	p.E1336K	0.934	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	84	0	0.00	176	87	33.08	-	-	-
SLC12A2	0	genome.wustl.edu	37	5	127474341	127474341	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	5	127474341	127474341	C	G	SNP	SLC12A2	ENST00000262461	human	ensembl	69_37n	+1	known	missense	c.1461	p.F487L	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	253	0	0.00	695	110	13.65	-	-	-
SNTG1	0	genome.wustl.edu	37	8	51363125	51363125	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	8	51363125	51363125	C	T	SNP	SNTG1	ENST00000518864	human	ensembl	69_37n	+1	known	missense	c.287	p.S96L	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	444	0	0.00	551	97	14.97	-	-	-
SPATA19	0	genome.wustl.edu	37	11	133712412	133712412	+	Silent	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	11	133712412	133712412	G	A	SNP	SPATA19	ENST00000299140	human	ensembl	69_37n	-1	known	silent	c.405	p.I135	0.022	NULL	NULL	-	no_errors	SPATA19	HGNC	ENSG00000166118	324	1	0.31	177	42	19.18	-	-	-
TGFBR1	0	genome.wustl.edu	37	9	101908824	101908824	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	101908824	101908824	C	G	SNP	TGFBR1	ENST00000374994	human	ensembl	69_37n	+1	known	missense	c.1188	p.F396L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	286	0	0.00	252	173	40.71	-	-	-
TGFBR2	0	genome.wustl.edu	37	3	30691805	30691805	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	3	30691805	30691805	G	A	SNP	TGFBR2	ENST00000359013	human	ensembl	69_37n	+1	known	missense	c.382	p.D128N	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Activin_II/TGFBeta-II_recpt,pfscan_Prot_kinase_cat_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513	264	0	0.00	173	68	28.22	-	-	-
TRBV7-4	0	genome.wustl.edu	37	7	142176456	142176456	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	7	142176456	142176456	G	A	SNP	TRBV7-4	ENST00000390369	human	ensembl	69_37n	-1	known	nonsense	c.220	p.R74*	0.000	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV7-4	HGNC	ENSG00000253409	265	0	0.00	109	47	29.94	-	-	-
TRIM5	0	genome.wustl.edu	37	11	5686469	5686469	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	11	5686469	5686469	G	C	SNP	TRIM5	ENST00000305836	human	ensembl	69_37n	-1	known	missense	c.1052	p.S351C	0.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM5	HGNC	ENSG00000132256	410	0	0.00	107	87	44.62	-	-	-
WHAMMP2	0	genome.wustl.edu	37	15	28986360	28986360	+	RNA	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	15	28986360	28986360	C	T	SNP	WHAMMP2	ENST00000508764	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.999	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334	194	0	0.00	243	66	21.36	-	-	-
WSCD1	0	genome.wustl.edu	37	17	6021367	6021367	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	17	6021367	6021367	G	A	SNP	WSCD1	ENST00000317744	human	ensembl	69_37n	+1	known	missense	c.1234	p.E412K	1.000	NULL	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314	80	0	0.00	48	50	51.02	-	-	-
ZNF131	0	genome.wustl.edu	37	5	43175143	43175143	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	5	43175143	43175143	G	C	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	+1	known	missense	c.1780	p.D594H	0.003	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	107	0	0.00	84	68	44.74	-	-	-
ZNF268	0	genome.wustl.edu	37	12	133779637	133779637	+	Silent	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	12	133779637	133779637	C	T	SNP	ZNF268	ENST00000228289	human	ensembl	69_37n	+1	known	silent	c.1365	p.F455	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612	158	0	0.00	274	49	15.12	-	-	-
ZNF484	0	genome.wustl.edu	37	9	95608938	95608938	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	95608938	95608938	G	C	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	missense	c.2137	p.Q713E	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	87	0	0.00	128	70	35.18	-	-	-
ZNF484	0	genome.wustl.edu	37	9	95609116	95609116	+	Silent	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	95609116	95609116	G	C	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	silent	c.1959	p.L653	0.036	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	111	0	0.00	132	73	35.44	-	-	-
ZNF484	0	genome.wustl.edu	37	9	95610467	95610467	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	9	95610467	95610467	G	C	SNP	ZNF484	ENST00000395506	human	ensembl	69_37n	-1	known	missense	c.608	p.S203C	0.039	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081	118	0	0.00	160	107	39.93	-	-	-
ZNF521	0	genome.wustl.edu	37	18	22806691	22806691	+	Silent	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	18	22806691	22806691	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	silent	c.1191	p.S397	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	98	0	0.00	137	34	19.88	-	-	-
ZNF737	0	genome.wustl.edu	37	19	20728657	20728657	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	19	20728657	20728657	C	T	SNP	ZNF737	ENST00000427401	human	ensembl	69_37n	-1	known	missense	c.352	p.E118K	0.716	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440	467	0	0.00	498	104	17.28	-	-	-
ZSCAN12	0	genome.wustl.edu	37	6	28358960	28358960	+	Silent	SNP	C	C	T			TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dfa0f8ea-ae94-4673-9751-f6cdad26022a	74428f88-9ecb-427b-83a6-faee8ee09c24	6	28358960	28358960	C	T	SNP	ZSCAN12	ENST00000361028	human	ensembl	69_37n	-1	known	silent	c.1107	p.Q369	0.068	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN12	HGNC	ENSG00000158691	329	0	0.00	148	80	35.09	-	-	-
