Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB1	0	genome.wustl.edu	37	7	87148753	87148753	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	7	87148753	87148753	C	G	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.2816	p.G939A	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	236	0	0.00	218	29	11.74	-	-	-
ACOT2	0	genome.wustl.edu	37	14	74042189	74042189	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	14	74042189	74042189	A	G	SNP	ACOT2	ENST00000238651	human	ensembl	69_37n	+1	known	missense	c.1424	p.H475R	0.000	pirsf_Acyl-CoA_thioEstase_long-chain	pfam_BAAT_C,pfam_Thio_Ohase/aa_AcTrfase,pirsf_Acyl-CoA_thioEstase_long-chain	-	no_errors	ACOT2	HGNC	ENSG00000119673	9	0	0.00	16	9	36.00	-	-	-
ANKRD24	0	genome.wustl.edu	37	19	4217300	4217300	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	19	4217300	4217300	G	A	SNP	ANKRD24	ENST00000262970	human	ensembl	69_37n	+1	known	missense	c.2413	p.A805T	0.232	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847	37	0	0.00	34	5	12.82	-	-	-
ASXL2	0	genome.wustl.edu	37	2	25967231	25967231	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	2	25967231	25967231	C	T	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.1975	p.D659N	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	243	0	0.00	174	28	13.79	-	-	-
BCAR3	0	genome.wustl.edu	37	1	94048116	94048116	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	94048116	94048116	C	G	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.1428	p.L476F	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	227	0	0.00	192	24	11.11	-	-	-
CR1	0	genome.wustl.edu	37	1	207796386	207796386	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	207796386	207796386	C	A	SNP	CR1	ENST00000367049	human	ensembl	69_37n	+1	known	missense	c.7325	p.S2442Y	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710	709	0	0.00	589	163	21.68	-	-	-
CREBRF	0	genome.wustl.edu	37	5	172535710	172535710	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	5	172535710	172535710	G	C	SNP	CREBRF	ENST00000540014	human	ensembl	69_37n	+1	known	missense	c.1306	p.E436Q	1.000	NULL	NULL	-	no_errors	CREBRF	HGNC	ENSG00000164463	188	0	0.00	194	30	13.33	-	-	-
ELTD1	0	genome.wustl.edu	37	1	79357327	79357327	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	79357327	79357327	C	T	SNP	ELTD1	ENST00000370742	human	ensembl	69_37n	-1	known	nonsense	c.1892	p.W631*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd,smart_EGF-like,smart_EGF-like_Ca-bd,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	109	0	0.00	96	32	25.00	-	-	-
GALNT2	0	genome.wustl.edu	37	1	230384985	230384985	+	Silent	SNP	G	G	A			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	1	230384985	230384985	G	A	SNP	GALNT2	ENST00000366672	human	ensembl	69_37n	+1	known	silent	c.873	p.R291	0.785	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641	198	0	0.00	194	33	14.54	-	-	-
GPC5	0	genome.wustl.edu	37	13	92345944	92345944	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	13	92345944	92345944	G	A	SNP	GPC5	ENST00000377067	human	ensembl	69_37n	+1	known	missense	c.829	p.V277I	0.943	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399	114	0	0.00	93	16	14.68	-	-	-
ITGB8	0	genome.wustl.edu	37	7	20441487	20441487	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	7	20441487	20441487	A	T	SNP	ITGB8	ENST00000222573	human	ensembl	69_37n	+1	known	missense	c.1425	p.R475S	0.012	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855	463	0	0.00	401	64	13.76	-	-	-
NT5E	0	genome.wustl.edu	37	6	86201888	86201888	+	Silent	SNP	T	T	C			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	6	86201888	86201888	T	C	SNP	NT5E	ENST00000257770	human	ensembl	69_37n	+1	known	silent	c.1554	p.H518	0.971	superfamily_5'-Nucleotdase_C	pfam_5'-Nucleotdase_C,pfam_Metallo_PEstase_dom,superfamily_5'-Nucleotdase_C,prints_5_nucleotidase/apyrase	-	no_errors	NT5E	HGNC	ENSG00000135318	164	0	0.00	167	23	12.11	-	-	-
OPN1LW	0	genome.wustl.edu	37	X	153416306	153416306	+	Silent	SNP	C	C	T			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	X	153416306	153416306	C	T	SNP	OPN1LW	ENST00000369951	human	ensembl	69_37n	+1	known	silent	c.291	p.V97	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_Opsin_red/grn,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076	188	0	0.00	166	19	10.22	-	-	-
PRR14L	0	genome.wustl.edu	37	22	32112726	32112726	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	22	32112726	32112726	C	T	SNP	PRR14L	ENST00000397493	human	ensembl	69_37n	-1	known	missense	c.1099	p.G367S	0.000	NULL	NULL	-	no_errors	PRR14L	HGNC	ENSG00000183530	377	0	0.00	385	47	10.85	-	-	-
SGK1	0	genome.wustl.edu	37	6	134492799	134492799	+	Silent	SNP	G	G	C			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	6	134492799	134492799	G	C	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	silent	c.1143	p.V381	0.992	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	159	1	0.62	895	173	16.15	-	-	-
SGK1	0	genome.wustl.edu	37	6	134493422	134493422	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	6	134493422	134493422	G	T	SNP	SGK1	ENST00000367858	human	ensembl	69_37n	-1	known	nonsense	c.980	p.S327*	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	SGK1	HGNC	ENSG00000118515	415	3	0.72	2301	408	15.04	-	-	-
SYMPK	0	genome.wustl.edu	37	19	46319770	46319770	+	Silent	SNP	G	G	A			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	19	46319770	46319770	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	69_37n	-1	known	silent	c.3324	p.A1108	1.000	NULL	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	92	0	0.00	76	22	22.45	-	-	-
TBC1D3	0	genome.wustl.edu	37	17	36340138	36340138	+	Silent	SNP	A	A	G			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	17	36340138	36340138	A	G	SNP	TBC1D3	ENST00000354664	human	ensembl	69_37n	-1	known	silent	c.889	p.L297	0.353	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	26	0	0.00	32	7	17.50	-	-	-
TP53	0	genome.wustl.edu	37	17	7578491	7578491	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	17	7578491	7578491	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.439	p.V147fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	128	0	0.00	112	36	23.84	-	-	-
TSHZ2	0	genome.wustl.edu	37	20	51870526	51870526	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	20	51870526	51870526	C	A	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	+1	known	missense	c.529	p.L177M	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	106	0	0.00	118	29	19.73	-	-	-
ZDBF2	0	genome.wustl.edu	37	2	207170990	207170990	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3903b485-366d-4318-b17d-a0194f032bd8	64613d52-ad24-4f06-8668-3e058043911b	2	207170990	207170990	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	69_37n	+1	known	nonsense	c.1738	p.E580*	0.900	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	340	0	0.00	359	72	16.71	-	-	-
