Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C9orf66	0	genome.wustl.edu	37	9	214549	214550	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	9	214549	214550	-	G	INS	C9orf66	ENST00000382387	human	ensembl	69_37n	-1	known	frame_shift_ins	c.848_847	p.H283fs	0.000:0.000	NULL	NULL	-	no_errors	C9orf66	HGNC	ENSG00000183784	18	0	0.00	28	8	22.22	-	-	-
CSMD3	0	genome.wustl.edu	37	8	113299452	113299452	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	8	113299452	113299452	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	missense	c.9172	p.D3058N	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	36	0	0.00	72	27	27.27	-	-	-
DIAPH3	0	genome.wustl.edu	37	13	60435515	60435515	+	RNA	SNP	G	G	A			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	13	60435515	60435515	G	A	SNP	DIAPH3	ENST00000498416	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DIAPH3	HGNC	ENSG00000139734	58	0	0.00	108	30	21.74	-	-	-
ERBB2	0	genome.wustl.edu	37	17	37880261	37880261	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	17	37880261	37880261	G	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	+1	known	missense	c.2305	p.D769Y	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	37	0	0.00	92	15	14.02	-	-	-
GON4L	0	genome.wustl.edu	37	1	155753682	155753682	+	Splice_Site	SNP	T	T	G			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	155753682	155753682	T	G	SNP	GON4L	ENST00000477831	human	ensembl	69_37n	-1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	16	0	0.00	11	25	69.44	-	-	-
MST1	0	genome.wustl.edu	37	3	49723916	49723916	+	Splice_Site	SNP	T	T	G			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	49723916	49723916	T	G	SNP	MST1	ENST00000449682	human	ensembl	69_37n	-1	known	splice_site	c.848-2	e8-2	0.527	-	-	-	no_errors	MST1	HGNC	ENSG00000173531	32	0	0.00	28	5	15.15	-	-	-
MUC1	0	genome.wustl.edu	37	1	155160715	155160715	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	155160715	155160715	T	C	SNP	MUC1	ENST00000425082	human	ensembl	69_37n	-1	known	missense	c.1070	p.N357S	0.793	pfam_SEA,smart_SEA,pfscan_SEA	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC1	HGNC	ENSG00000185499	32	0	0.00	95	21	17.95	-	-	-
MUC17	0	genome.wustl.edu	37	7	100685739	100685739	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	7	100685739	100685739	G	A	SNP	MUC17	ENST00000306151	human	ensembl	69_37n	+1	known	missense	c.11042	p.G3681D	0.001	NULL	pfam_SEA,smart_SEA,pfscan_EG-like_dom,pfscan_SEA	-	no_errors	MUC17	HGNC	ENSG00000169876	33	0	0.00	95	26	21.49	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	178916944	178916944	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.331	p.K111E	1.000	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	37	0	0.00	42	20	32.26	-	-	-
RHAG	0	genome.wustl.edu	37	6	49582475	49582475	+	Silent	SNP	G	G	A			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	6	49582475	49582475	G	A	SNP	RHAG	ENST00000371175	human	ensembl	69_37n	-1	known	silent	c.732	p.Y244	1.000	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	pfam_NH4_transpt_AmtB-like,superfamily_NH4_transpt_AmtB-like,prints_RhesusRHD	-	no_errors	RHAG	HGNC	ENSG00000112077	54	0	0.00	108	17	13.60	-	-	-
SPHKAP	0	genome.wustl.edu	37	2	228855865	228855865	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	2	228855865	228855865	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	69_37n	-1	known	missense	c.4810	p.P1604T	0.003	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	48	0	0.00	80	20	20.00	-	-	-
TLN1	0	genome.wustl.edu	37	9	35706350	35706350	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	9	35706350	35706350	G	A	SNP	TLN1	ENST00000314888	human	ensembl	69_37n	-1	known	missense	c.5204	p.A1735V	1.000	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_Vinculin-bd_dom,pfam_ILWEQ,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ,pfscan_FERM_domain,pfscan_ILWEQ	-	no_errors	TLN1	HGNC	ENSG00000137076	19	0	0.00	48	11	18.64	-	-	-
TP53	0	genome.wustl.edu	37	17	7577541	7577541	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	17	7577541	7577541	T	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.740	p.N247I	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	41	0	0.00	53	12	18.46	-	-	-
ZBTB33	0	genome.wustl.edu	37	X	119389142	119389142	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	X	119389142	119389142	A	C	SNP	ZBTB33	ENST00000326624	human	ensembl	69_37n	+1	known	missense	c.1872	p.E624D	0.998	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB33	HGNC	ENSG00000177485	35	0	0.00	76	28	26.92	-	-	-
