Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BDP1	0	genome.wustl.edu	37	5	70837323	70837323	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	5	70837323	70837323	G	C	SNP	BDP1	ENST00000358731	human	ensembl	69_37n	+1	known	missense	c.6065	p.S2022T	0.991	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734	27	0	0.00	31	6	16.22	-	-	-
C9orf43	0	genome.wustl.edu	37	9	116187646	116187648	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	9	116187646	116187648	GCA	-	DEL	C9orf43	ENST00000288462	human	ensembl	69_37n	+1	known	in_frame_del	c.888_890	p.Q300in_frame_del	0.211:0.207:0.211	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	37	0	0.00	25	4	13.79	-	-	-
COASY	0	genome.wustl.edu	37	17	40715279	40715279	+	Silent	SNP	C	C	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	17	40715279	40715279	C	T	SNP	COASY	ENST00000590958	human	ensembl	69_37n	+1	known	silent	c.726	p.V242	0.167	pfam_Cytidylyltransf	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	41	0	0.00	40	5	11.11	-	-	-
CTNNA3	0	genome.wustl.edu	37	10	68280418	68280418	+	Silent	SNP	G	G	A			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	10	68280418	68280418	G	A	SNP	CTNNA3	ENST00000373744	human	ensembl	69_37n	-1	known	silent	c.1488	p.A496	0.798	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230	43	0	0.00	48	7	12.73	-	-	-
DFFA	0	genome.wustl.edu	37	1	10527263	10527263	+	Nonsense_Mutation	SNP	G	G	C			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	1	10527263	10527263	G	C	SNP	DFFA	ENST00000377038	human	ensembl	69_37n	-1	known	nonsense	c.425	p.S142*	0.982	pfam_DNA_fragmentation_C,pirsf_DNA_fragmentation_factor_asu	pfam_DNA_fragmentation_C,pfam_CAD,smart_CAD,pirsf_DNA_fragmentation_factor_asu,pfscan_CAD	-	no_errors	DFFA	HGNC	ENSG00000160049	54	0	0.00	50	6	10.71	-	-	-
EEF1A1	0	genome.wustl.edu	37	6	74229113	74229113	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	6	74229113	74229113	C	T	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.271	p.D91N	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	54	0	0.00	58	7	10.77	-	-	-
EML5	0	genome.wustl.edu	37	14	89105192	89105192	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	14	89105192	89105192	G	A	SNP	EML5	ENST00000554922	human	ensembl	69_37n	-1	known	missense	c.4297	p.H1433Y	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	39	0	0.00	27	4	12.90	-	-	-
ENSG00000259172	0	genome.wustl.edu	37	15	101844924	101844924	+	RNA	SNP	C	C	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	15	101844924	101844924	C	T	SNP	ENSG00000259172	ENST00000558838	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-299G20.2	Clone_based_vega_gene	ENSG00000259172	9	0	0.00	2	7	77.78	-	-	-
GANAB	0	genome.wustl.edu	37	11	62400546	62400546	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	11	62400546	62400546	G	A	SNP	GANAB	ENST00000346178	human	ensembl	69_37n	-1	known	missense	c.812	p.S271F	1.000	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd	-	no_errors	GANAB	HGNC	ENSG00000089597	44	0	0.00	35	4	10.26	-	-	-
HMCN1	0	genome.wustl.edu	37	1	185878571	185878571	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	1	185878571	185878571	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.724	p.P242S	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	71	0	0.00	50	7	12.28	-	-	-
LYST	0	genome.wustl.edu	37	1	235910542	235910542	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	1	235910542	235910542	C	T	SNP	LYST	ENST00000487530	human	ensembl	69_37n	-1	novel	missense	c.410	p.R137Q	0.968	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LYST	HGNC	ENSG00000143669	43	0	0.00	45	6	11.76	-	-	-
OR6S1	0	genome.wustl.edu	37	14	21109617	21109617	+	Silent	SNP	G	G	A			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	14	21109617	21109617	G	A	SNP	OR6S1	ENST00000320704	human	ensembl	69_37n	-1	known	silent	c.234	p.V78	0.990	pfam_7TM_GPCR_Rhodpsn,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR6S1	HGNC	ENSG00000181803	22	0	0.00	17	5	22.73	-	-	-
PSMC3IP	0	genome.wustl.edu	37	17	40726211	40726211	+	Silent	SNP	C	C	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	17	40726211	40726211	C	T	SNP	PSMC3IP	ENST00000393795	human	ensembl	69_37n	-1	known	silent	c.243	p.V81	1.000	pfam_TBPIP,pfam_Pencillinase_R	pfam_TBPIP,pfam_Pencillinase_R	-	no_errors	PSMC3IP	HGNC	ENSG00000131470	73	0	0.00	89	16	15.24	-	-	-
TAB3	0	genome.wustl.edu	37	X	30873310	30873310	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	X	30873310	30873310	G	A	SNP	TAB3	ENST00000288422	human	ensembl	69_37n	-1	known	nonsense	c.472	p.Q158*	1.000	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625	106	0	0.00	91	11	10.78	-	-	-
TAS2R8	0	genome.wustl.edu	37	12	10958815	10958815	+	Silent	SNP	G	G	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	12	10958815	10958815	G	T	SNP	TAS2R8	ENST00000240615	human	ensembl	69_37n	-1	known	silent	c.765	p.T255	0.000	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	TAS2R8	HGNC	ENSG00000121314	25	0	0.00	18	3	14.29	-	-	-
TEX14	0	genome.wustl.edu	37	17	56665337	56665337	+	Silent	SNP	C	C	T			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	17	56665337	56665337	C	T	SNP	TEX14	ENST00000240361	human	ensembl	69_37n	-1	known	silent	c.2640	p.Q880	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TEX14	HGNC	ENSG00000121101	55	0	0.00	60	8	11.76	-	-	-
UBXN2B	0	genome.wustl.edu	37	8	59324005	59324005	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D8-A4Z1-01A-21D-A25Q-09	TCGA-D8-A4Z1-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c74f345b-5217-42db-88d0-ab14aab1b1f3	032b2649-73ad-4838-bd51-afd845fee9b1	8	59324005	59324005	C	-	DEL	UBXN2B	ENST00000399598	human	ensembl	69_37n	+1	known	frame_shift_del	c.61	p.P21fs	1.000	NULL	pfam_SEP_domain,pfam_UBX,superfamily_SEP_domain,smart_SEP_domain,smart_UBX,pfscan_UBX	-	no_errors	UBXN2B	HGNC	ENSG00000215114	14	0	0.00	4	2	33.33	-	-	-
