Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTN4	0	genome.wustl.edu	37	19	39216514	39216514	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	19	39216514	39216514	G	T	SNP	ACTN4	ENST00000252699	human	ensembl	69_37n	+1	known	missense	c.2161	p.D721Y	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN4	HGNC	ENSG00000130402	93	0	0.00	102	24	19.05	-	-	-
ATXN1	0	genome.wustl.edu	37	6	16327907	16327909	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	16327907	16327909	TGA	-	DEL	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	in_frame_del	c.635_633	p.H211in_frame_del	0.024:0.024:0.024	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	9	0	0.00	16	7	30.43	-	-	-
DIP2B	0	genome.wustl.edu	37	12	51128870	51128870	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	12	51128870	51128870	A	G	SNP	DIP2B	ENST00000301180	human	ensembl	69_37n	+1	known	missense	c.4058	p.E1353G	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	372	0	0.00	183	96	34.41	-	-	-
DIS3	0	genome.wustl.edu	37	13	73349502	73349502	+	Silent	SNP	C	C	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	13	73349502	73349502	C	T	SNP	DIS3	ENST00000377767	human	ensembl	69_37n	-1	known	silent	c.834	p.Q278	1.000	NULL	pfam_RNase_II/R,smart_PINc_nuc-bd,smart_RNase_II/R	-	no_errors	DIS3	HGNC	ENSG00000083520	251	0	0.00	105	85	44.74	-	-	-
ESR1	0	genome.wustl.edu	37	6	152129128	152129131	+	Frame_Shift_Del	DEL	CCGT	CCGT	-			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	CCGT	CCGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	152129128	152129131	CCGT	-	DEL	ESR1	ENST00000206249	human	ensembl	69_37n	+1	known	frame_shift_del	c.81_84	p.P29fs	0.656:0.976:0.987:0.995	prints_Oestr_rcpt	pfam_Oestr_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Oestr_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR1	HGNC	ENSG00000091831	25	0	0.00	16	7	29.17	-	-	-
FAM22D	0	genome.wustl.edu	37	10	89124862	89124862	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	10	89124862	89124862	G	A	SNP	FAM22D	ENST00000381697	human	ensembl	69_37n	+1	known	missense	c.1420	p.E474K	0.000	NULL	NULL	-	no_errors	FAM22D	HGNC	ENSG00000214562	17	0	0.00	9	6	40.00	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115922	8115923	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	10	8115922	8115923	-	C	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1271_1272	p.P426fs	1.000:1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	111	0	0.00	87	38	30.40	-	-	-
GDPD1	0	genome.wustl.edu	37	17	57326133	57326133	+	Silent	SNP	C	C	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	17	57326133	57326133	C	T	SNP	GDPD1	ENST00000284116	human	ensembl	69_37n	+1	known	silent	c.354	p.V118	0.997	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982	685	2	0.29	423	69	14.02	-	-	-
HLA-A	0	genome.wustl.edu	37	6	29911272	29911272	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	29911272	29911272	T	G	SNP	HLA-A	ENST00000376806	human	ensembl	69_37n	+1	known	missense	c.571	p.W191G	0.126	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2	-	no_errors	HLA-A	HGNC	ENSG00000206503	9	0	0.00	13	4	23.53	-	-	-
LTBP4	0	genome.wustl.edu	37	19	41125311	41125311	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	19	41125311	41125311	G	T	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	+1	known	nonsense	c.3328	p.E1110*	0.996	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	187	0	0.00	130	70	35.00	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56152454	56152455	+	Frame_Shift_Ins	INS	-	-	A			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	5	56152454	56152455	-	A	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.510_511	p.G171fs	0.997:1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	264	0	0.00	92	54	36.99	-	-	-
MGAM	0	genome.wustl.edu	37	7	141752647	141752647	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	7	141752647	141752647	G	T	SNP	MGAM	ENST00000549489	human	ensembl	69_37n	+1	known	missense	c.3022	p.V1008F	0.014	superfamily_Glyco_hydro-type_carb-bd	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Glyco_hydro-type_carb-bd,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	307	1	0.32	155	98	38.74	-	-	-
MMP15	0	genome.wustl.edu	37	16	58075625	58075625	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	58075625	58075625	C	A	SNP	MMP15	ENST00000219271	human	ensembl	69_37n	+1	known	missense	c.1015	p.P339T	1.000	pirsf_Pept_M10A_matrix_strom	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP15	HGNC	ENSG00000102996	11	0	0.00	12	7	36.84	-	-	-
MYO7A	0	genome.wustl.edu	37	11	76872024	76872024	+	Silent	SNP	C	C	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	11	76872024	76872024	C	T	SNP	MYO7A	ENST00000409709	human	ensembl	69_37n	+1	known	silent	c.1206	p.I402	0.996	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	143	0	0.00	174	77	30.68	-	-	-
OR10Z1	0	genome.wustl.edu	37	1	158577134	158577134	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	1	158577134	158577134	G	C	SNP	OR10Z1	ENST00000361284	human	ensembl	69_37n	+1	known	missense	c.906	p.R302S	0.032	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR10Z1	HGNC	ENSG00000198967	182	0	0.00	139	52	27.23	-	-	-
SLC12A5	0	genome.wustl.edu	37	20	44665941	44665941	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	20	44665941	44665941	G	T	SNP	SLC12A5	ENST00000454036	human	ensembl	69_37n	+1	known	missense	c.598	p.G200W	1.000	pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140	191	0	0.00	121	82	40.39	-	-	-
SLC24A5	0	genome.wustl.edu	37	15	48431272	48431272	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	15	48431272	48431272	A	-	DEL	SLC24A5	ENST00000341459	human	ensembl	69_37n	+1	known	frame_shift_del	c.978	p.K328fs	1.000	tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A5	HGNC	ENSG00000188467	153	0	0.00	98	36	26.47	-	-	-
SLC38A8	0	genome.wustl.edu	37	16	84050323	84050323	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	84050323	84050323	C	T	SNP	SLC38A8	ENST00000299709	human	ensembl	69_37n	-1	known	missense	c.963	p.M321I	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558	51	0	0.00	15	21	58.33	-	-	-
SNX20	0	genome.wustl.edu	37	16	50709816	50709816	+	Silent	SNP	C	C	T			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	16	50709816	50709816	C	T	SNP	SNX20	ENST00000330943	human	ensembl	69_37n	-1	known	silent	c.147	p.L49	0.046	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208	90	0	0.00	51	53	50.96	-	-	-
USP11	0	genome.wustl.edu	37	X	47101513	47101513	+	Silent	SNP	A	A	G			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	X	47101513	47101513	A	G	SNP	USP11	ENST00000218348	human	ensembl	69_37n	+1	known	silent	c.1341	p.K447	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP11	HGNC	ENSG00000102226	154	0	0.00	91	67	42.41	-	-	-
WRNIP1	0	genome.wustl.edu	37	6	2785389	2785389	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A10A-01A-21D-A10Y-09	TCGA-E2-A10A-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cd49ccc5-a776-4307-930c-298ba6cfdf79	bb8f16ce-4126-41ad-8775-9f7322e07420	6	2785389	2785389	G	A	SNP	WRNIP1	ENST00000380773	human	ensembl	69_37n	+1	known	missense	c.1871	p.R624K	1.000	pfam_MgsA_C	pfam_MgsA_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,smart_Znf_Rad18_put,smart_AAA+_ATPase	-	no_errors	WRNIP1	HGNC	ENSG00000124535	44	0	0.00	36	15	29.41	-	-	-
