Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCD1	0	genome.wustl.edu	37	X	153005554	153005554	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	X	153005554	153005554	A	G	SNP	ABCD1	ENST00000443684	human	ensembl	69_37n	+1	known	missense	c.500	p.K167R	0.886	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ABCD1	HGNC	ENSG00000101986	37	0	0.00	48	11	18.64	-	-	-
AP3M1	0	genome.wustl.edu	37	10	75885944	75885944	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	10	75885944	75885944	G	C	SNP	AP3M1	ENST00000355264	human	ensembl	69_37n	-1	known	missense	c.973	p.P325A	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M1	HGNC	ENSG00000185009	89	0	0.00	161	36	18.27	-	-	-
ARID3B	0	genome.wustl.edu	37	15	74836605	74836605	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	15	74836605	74836605	G	A	SNP	ARID3B	ENST00000346246	human	ensembl	69_37n	+1	known	missense	c.328	p.V110M	0.986	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3B	HGNC	ENSG00000179361	99	0	0.00	184	23	11.11	-	-	-
BAZ2A	0	genome.wustl.edu	37	12	56997461	56997461	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	12	56997461	56997461	C	T	SNP	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	missense	c.3068	p.R1023Q	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	39	0	0.00	74	27	26.73	-	-	-
COASY	0	genome.wustl.edu	37	17	40715065	40715067	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	17	40715065	40715067	GCT	-	DEL	COASY	ENST00000590958	human	ensembl	69_37n	+1	known	in_frame_del	c.512_514	p.C173in_frame_del	1.000:0.998:1.000	NULL	pfam_Depp_CoAkinase,pfam_Cytidylyltransf,tigrfam_Depp_CoAkinase	-	no_errors	COASY	HGNC	ENSG00000068120	27	0	0.00	44	13	22.81	-	-	-
DCAF6	0	genome.wustl.edu	37	1	168032951	168032951	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	1	168032951	168032951	C	T	SNP	DCAF6	ENST00000367840	human	ensembl	69_37n	+1	known	missense	c.2393	p.P798L	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164	57	0	0.00	128	23	15.23	-	-	-
DNM1P46	0	genome.wustl.edu	37	15	100332799	100332799	+	RNA	SNP	A	A	C			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	15	100332799	100332799	A	C	SNP	DNM1P46	ENST00000341853	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	33	0	0.00	71	17	19.32	-	-	-
GCN1L1	0	genome.wustl.edu	37	12	120593147	120593147	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	12	120593147	120593147	C	A	SNP	GCN1L1	ENST00000300648	human	ensembl	69_37n	-1	known	missense	c.3528	p.R1176S	0.998	superfamily_ARM-type_fold	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154	43	0	0.00	94	35	27.13	-	-	-
HERC2P4	0	genome.wustl.edu	37	16	32191941	32191941	+	RNA	SNP	C	C	T			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	16	32191941	32191941	C	T	SNP	HERC2P4	ENST00000566591	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267	18	0	0.00	23	8	25.81	-	-	-
IGSF9B	0	genome.wustl.edu	37	11	133790479	133790479	+	Silent	SNP	G	G	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	11	133790479	133790479	G	A	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	silent	c.3141	p.F1047	0.819	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	14	0	0.00	13	4	23.53	-	-	-
IL27RA	0	genome.wustl.edu	37	19	14150592	14150592	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	19	14150592	14150592	C	G	SNP	IL27RA	ENST00000263379	human	ensembl	69_37n	+1	known	missense	c.404	p.P135R	0.005	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL27RA	HGNC	ENSG00000104998	15	0	0.00	37	20	35.09	-	-	-
KCNK16	0	genome.wustl.edu	37	6	39283076	39283076	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	6	39283076	39283076	G	A	SNP	KCNK16	ENST00000425054	human	ensembl	69_37n	-1	known	missense	c.793	p.P265S	0.000	NULL	pfam_Ion_trans_2,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981	60	0	0.00	86	31	26.50	-	-	-
NEDD4L	0	genome.wustl.edu	37	18	56018246	56018246	+	Silent	SNP	C	C	T			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	18	56018246	56018246	C	T	SNP	NEDD4L	ENST00000400345	human	ensembl	69_37n	+1	known	silent	c.1677	p.H559	0.889	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP,prints_C2_dom	-	no_errors	NEDD4L	HGNC	ENSG00000049759	57	0	0.00	114	30	20.83	-	-	-
PER3	0	genome.wustl.edu	37	1	7890055	7890055	+	Silent	SNP	T	T	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	1	7890055	7890055	T	A	SNP	PER3	ENST00000361923	human	ensembl	69_37n	+1	known	silent	c.3021	p.A1007	0.063	pfam_Period_circadian-like_C	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246	17	0	0.00	58	17	22.37	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	40	0	0.00	73	13	15.12	-	-	-
PKD1L1	0	genome.wustl.edu	37	7	47969011	47969011	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	7	47969011	47969011	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	69_37n	-1	known	nonsense	c.850	p.R284*	0.000	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_LipOase_LH2,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_LipOase_LH2,pfscan_PKD_dom,pfscan_LipOase_LH2,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683	59	0	0.00	118	28	19.18	-	-	-
RP1L1	0	genome.wustl.edu	37	8	10469694	10469696	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	8	10469694	10469696	CTG	-	DEL	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	in_frame_del	c.1914_1912	p.Q638in_frame_del	0.000:0.000:0.000	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	14	0	0.00	10	5	31.25	-	-	-
SERPINB8	0	genome.wustl.edu	37	18	61650836	61650836	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	18	61650836	61650836	G	A	SNP	SERPINB8	ENST00000353706	human	ensembl	69_37n	+1	known	missense	c.448	p.A150T	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB8	HGNC	ENSG00000166401	35	0	0.00	74	25	25.25	-	-	-
TMEM26	0	genome.wustl.edu	37	10	63191081	63191081	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	10	63191081	63191081	T	C	SNP	TMEM26	ENST00000399298	human	ensembl	69_37n	-1	known	missense	c.280	p.I94V	0.034	pfam_Transmembrane_26	pfam_Transmembrane_26	-	no_errors	TMEM26	HGNC	ENSG00000196932	89	0	0.00	193	59	23.41	-	-	-
TPPP2	0	genome.wustl.edu	37	14	21500170	21500170	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L6-01A-11D-A13L-09	TCGA-E2-A1L6-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f610239f-5610-4d7b-bc31-ae3ccb9c425d	3388c646-ffac-43bf-b8a6-c5f216b17af0	14	21500170	21500170	G	A	SNP	TPPP2	ENST00000321760	human	ensembl	69_37n	+1	known	missense	c.447	p.M149I	0.001	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP2	HGNC	ENSG00000179636	43	0	0.00	106	26	19.55	-	-	-
