Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM23	0	genome.wustl.edu	37	2	207406802	207406802	+	Silent	SNP	A	A	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	207406802	207406802	A	G	SNP	ADAM23	ENST00000264377	human	ensembl	69_37n	+1	known	silent	c.600	p.G200	0.683	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	53	0	0.00	37	11	22.92	-	-	-
AKAP4	0	genome.wustl.edu	37	X	49958245	49958245	+	Silent	SNP	C	C	T			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	X	49958245	49958245	C	T	SNP	AKAP4	ENST00000358526	human	ensembl	69_37n	-1	known	silent	c.1119	p.R373	0.674	pfam_AKAP_110_C,smart_AKAP_110	pfam_AKAP_110_C,pfam_RII_binding_1,smart_AKAP_110	-	no_errors	AKAP4	HGNC	ENSG00000147081	44	0	0.00	45	9	16.67	-	-	-
ARHGEF10L	0	genome.wustl.edu	37	1	17949512	17949512	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	17949512	17949512	G	A	SNP	ARHGEF10L	ENST00000361221	human	ensembl	69_37n	+1	known	missense	c.1042	p.E348K	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10L	HGNC	ENSG00000074964	18	0	0.00	14	6	30.00	-	-	-
ATAD5	0	genome.wustl.edu	37	17	29214375	29214375	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	29214375	29214375	C	G	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	+1	known	missense	c.4243	p.P1415A	0.982	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	66	0	0.00	31	24	43.64	-	-	-
C5orf42	0	genome.wustl.edu	37	5	37169187	37169187	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	5	37169187	37169187	A	T	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.6939	p.N2313K	0.350	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	159	0	0.00	79	59	42.45	-	-	-
C5orf60	0	genome.wustl.edu	37	5	179071958	179071958	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	5	179071958	179071958	C	G	SNP	C5orf60	ENST00000448248	human	ensembl	69_37n	-1	known	missense	c.64	p.D22H	0.027	NULL	NULL	-	no_errors	C5orf60	HGNC	ENSG00000204661	17	0	0.00	19	6	24.00	-	-	-
C9orf89	0	genome.wustl.edu	37	9	95869982	95869982	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	95869982	95869982	C	G	SNP	C9orf89	ENST00000466409	human	ensembl	69_37n	+1	known	missense	c.34	p.Q12E	0.996	NULL	superfamily_DEATH-like	-	no_errors	C9orf89	HGNC	ENSG00000165233	28	0	0.00	23	9	28.12	-	-	-
CDH1	0	genome.wustl.edu	37	16	68844245	68844245	+	Splice_Site	SNP	G	G	A			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	16	68844245	68844245	G	A	SNP	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	splice_site	c.832+1	e6+1	1.000	-	-	-	no_errors	CDH1	HGNC	ENSG00000039068	44	0	0.00	11	13	54.17	-	-	-
CLEC12A	0	genome.wustl.edu	37	12	10134707	10134707	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	12	10134707	10134707	A	C	SNP	CLEC12A	ENST00000355690	human	ensembl	69_37n	+1	known	missense	c.650	p.N217T	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12A	HGNC	ENSG00000172322	85	0	0.00	42	12	22.22	-	-	-
CNTRL	0	genome.wustl.edu	37	9	123917201	123917201	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	123917201	123917201	C	G	SNP	CNTRL	ENST00000373845	human	ensembl	69_37n	+1	known	missense	c.382	p.L128V	0.001	NULL	superfamily_tRNA-bd_arm	-	no_errors	CNTRL	HGNC	ENSG00000119397	126	0	0.00	140	27	16.17	-	-	-
DNAH9	0	genome.wustl.edu	37	17	11650986	11650986	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	17	11650986	11650986	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	+1	known	missense	c.6513	p.M2171I	1.000	pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	62	0	0.00	25	10	28.57	-	-	-
DTX2	0	genome.wustl.edu	37	7	76111950	76111950	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	76111950	76111950	C	G	SNP	DTX2	ENST00000324432	human	ensembl	69_37n	+1	known	missense	c.394	p.L132V	0.998	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	Clone_based_vega_gene	ENSG00000091073	30	0	0.00	8	11	57.89	-	-	-
EIF2D	0	genome.wustl.edu	37	1	206769083	206769083	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	206769083	206769083	C	G	SNP	EIF2D	ENST00000271764	human	ensembl	69_37n	-1	known	missense	c.1493	p.R498T	1.000	pfam_TIF_SUI1,superfamily_TIF_SUI1,pfscan_TIF_SUI1	pfam_TIF_SUI1,superfamily_TIF_SUI1,superfamily_SWIB_MDM2_domain,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,pfscan_TIF_SUI1	-	no_errors	EIF2D	HGNC	ENSG00000143486	96	0	0.00	36	100	73.53	-	-	-
EIF4H	0	genome.wustl.edu	37	7	73609623	73609623	+	Silent	SNP	A	A	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	73609623	73609623	A	G	SNP	EIF4H	ENST00000265753	human	ensembl	69_37n	+1	known	silent	c.732	p.Q244	0.003	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	EIF4H	HGNC	ENSG00000106682	41	0	0.00	21	17	44.74	-	-	-
FLI1	0	genome.wustl.edu	37	11	128642719	128642719	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	11	128642719	128642719	A	G	SNP	FLI1	ENST00000429175	human	ensembl	69_37n	+1	known	missense	c.428	p.E143G	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	FLI1	HGNC	ENSG00000151702	53	0	0.00	25	6	19.35	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29612363	29612363	+	RNA	SNP	G	G	C			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	20	29612363	29612363	G	C	SNP	FRG1B	ENST00000482423	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	8	0	0.00	4	4	50.00	-	-	-
GCC2	0	genome.wustl.edu	37	2	109092242	109092242	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	2	109092242	109092242	G	T	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	+1	known	missense	c.2996	p.R999L	0.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	20	0	0.00	10	8	44.44	-	-	-
GNS	0	genome.wustl.edu	37	12	65133264	65133264	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	12	65133264	65133264	G	A	SNP	GNS	ENST00000540196	human	ensembl	69_37n	-1	novel	missense	c.349	p.L117F	0.998	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GNS	HGNC	ENSG00000135677	85	0	0.00	68	41	37.61	-	-	-
GRIK2	0	genome.wustl.edu	37	6	102376327	102376327	+	Silent	SNP	A	A	C			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	6	102376327	102376327	A	C	SNP	GRIK2	ENST00000421544	human	ensembl	69_37n	+1	known	silent	c.1905	p.I635	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418	139	0	0.00	74	26	26.00	-	-	-
IGHA1	0	genome.wustl.edu	37	14	106173790	106173790	+	Silent	SNP	A	A	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	14	106173790	106173790	A	G	SNP	IGHA1	ENST00000390547	human	ensembl	69_37n	-1	known	silent	c.777	p.D259	0.000	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHA1	HGNC	ENSG00000211895	10	0	0.00	27	21	43.75	-	-	-
LAMB3	0	genome.wustl.edu	37	1	209803184	209803184	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	209803184	209803184	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	69_37n	-1	known	missense	c.1030	p.D344N	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	52	0	0.00	62	21	25.30	-	-	-
LAMC1	0	genome.wustl.edu	37	1	183093773	183093773	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	183093773	183093773	A	C	SNP	LAMC1	ENST00000258341	human	ensembl	69_37n	+1	known	missense	c.2409	p.R803S	0.823	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	81	0	0.00	89	16	15.24	-	-	-
LMNA	0	genome.wustl.edu	37	1	156104249	156104249	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	156104249	156104249	G	A	SNP	LMNA	ENST00000368300	human	ensembl	69_37n	+1	known	missense	c.569	p.R190Q	1.000	pfam_F	pfam_F,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789	60	0	0.00	65	16	19.51	-	-	-
MUC12	0	genome.wustl.edu	37	7	100636820	100636820	+	Silent	SNP	T	T	C			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	7	100636820	100636820	T	C	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	silent	c.3405	p.T1135	0.001	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	73	0	0.00	13	2	13.33	-	-	-
NUP210L	0	genome.wustl.edu	37	1	153974380	153974380	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	1	153974380	153974380	T	C	SNP	NUP210L	ENST00000368559	human	ensembl	69_37n	-1	known	missense	c.5012	p.Y1671C	0.993	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552	69	0	0.00	30	49	62.03	-	-	-
OR1B1	0	genome.wustl.edu	37	9	125391118	125391118	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	125391118	125391118	G	A	SNP	OR1B1	ENST00000304833	human	ensembl	69_37n	-1	novel	missense	c.697	p.R233C	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR1B1	HGNC	ENSG00000171484	36	0	0.00	18	5	21.74	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	54	0	0.00	13	31	70.45	-	-	-
PTPDC1	0	genome.wustl.edu	37	9	96847676	96847676	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	96847676	96847676	C	A	SNP	PTPDC1	ENST00000375360	human	ensembl	69_37n	+1	known	missense	c.226	p.Q76K	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	PTPDC1	HGNC	ENSG00000158079	36	0	0.00	20	11	35.48	-	-	-
RBL1	0	genome.wustl.edu	37	20	35661256	35661256	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	20	35661256	35661256	T	G	SNP	RBL1	ENST00000373664	human	ensembl	69_37n	-1	known	missense	c.2194	p.I732L	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,pfam_Rb_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL1	HGNC	ENSG00000080839	48	0	0.00	41	7	14.58	-	-	-
SMARCA2	0	genome.wustl.edu	37	9	2054717	2054717	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	2054717	2054717	G	T	SNP	SMARCA2	ENST00000349721	human	ensembl	69_37n	+1	known	missense	c.1167	p.Q389H	0.888	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	80	0	0.00	41	35	46.05	-	-	-
TUBBP5	0	genome.wustl.edu	37	9	141069844	141069844	+	RNA	SNP	T	T	C			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	9	141069844	141069844	T	C	SNP	TUBBP5	ENST00000290377	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	11	0	0.00	12	5	29.41	-	-	-
ZIC2	0	genome.wustl.edu	37	13	100635003	100635006	+	Frame_Shift_Del	DEL	GCGG	GCGG	-			TCGA-E2-A1L8-01A-11D-A13L-09	TCGA-E2-A1L8-10A-01D-A13O-09	GCGG	GCGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	04a7762f-2cbb-498b-ab4e-921406c1aec0	7931bb8b-3c42-4cee-b39b-86371aa369f6	13	100635003	100635006	GCGG	-	DEL	ZIC2	ENST00000376335	human	ensembl	69_37n	+1	known	frame_shift_del	c.685_688	p.A229fs	1.000:1.000:1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355	16	0	0.00	4	2	33.33	-	-	-
