Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
A2ML1	0	genome.wustl.edu	37	12	8998092	8998092	+	Nonsense_Mutation	SNP	A	A	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	8998092	8998092	A	T	SNP	A2ML1	ENST00000299698	human	ensembl	69_37n	+1	known	nonsense	c.1531	p.K511*	0.136	pfam_A2M_N_2	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535	41	0	0.00	35	16	31.37	-	-	-
ABL1	0	genome.wustl.edu	37	9	133729582	133729582	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	133729582	133729582	G	A	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	+1	known	missense	c.268	p.D90N	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	38	0	0.00	31	9	22.50	-	-	-
ACE	0	genome.wustl.edu	37	17	61557814	61557814	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	17	61557814	61557814	G	A	SNP	ACE	ENST00000290866	human	ensembl	69_37n	+1	known	missense	c.772	p.V258I	1.000	pfam_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	35	0	0.00	26	16	38.10	-	-	-
ADD2	0	genome.wustl.edu	37	2	70905967	70905967	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	70905967	70905967	C	T	SNP	ADD2	ENST00000264436	human	ensembl	69_37n	-1	known	missense	c.1252	p.A418T	0.055	NULL	pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N	-	no_errors	ADD2	HGNC	ENSG00000075340	46	0	0.00	42	18	29.51	-	-	-
APOBR	0	genome.wustl.edu	37	16	28507424	28507424	+	Silent	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	16	28507424	28507424	C	T	SNP	APOBR	ENST00000564831	human	ensembl	69_37n	+1	known	silent	c.1062	p.A354	0.000	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	17	0	0.00	6	5	45.45	-	-	-
BZW1	0	genome.wustl.edu	37	2	201682951	201682951	+	Silent	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	201682951	201682951	C	T	SNP	BZW1	ENST00000409600	human	ensembl	69_37n	+1	known	silent	c.654	p.L218	0.974	NULL	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW1	HGNC	ENSG00000082153	33	0	0.00	21	14	40.00	-	-	-
CAMSAP1	0	genome.wustl.edu	37	9	138714464	138714464	+	Silent	SNP	C	C	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	9	138714464	138714464	C	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	69_37n	-1	known	silent	c.2076	p.G692	0.017	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrell-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	30	0	0.00	25	9	26.47	-	-	-
CCDC172	0	genome.wustl.edu	37	10	118100287	118100287	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	118100287	118100287	G	C	SNP	CCDC172	ENST00000333254	human	ensembl	69_37n	+1	known	missense	c.207	p.L69F	1.000	NULL	NULL	-	no_errors	CCDC172	HGNC	ENSG00000182645	37	0	0.00	20	8	28.57	-	-	-
CHSY3	0	genome.wustl.edu	37	5	129520402	129520402	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	129520402	129520402	C	T	SNP	CHSY3	ENST00000305031	human	ensembl	69_37n	+1	known	nonsense	c.1567	p.Q523*	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	23	0	0.00	24	8	25.00	-	-	-
CRISPLD2	0	genome.wustl.edu	37	16	84888433	84888433	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	16	84888433	84888433	G	A	SNP	CRISPLD2	ENST00000262424	human	ensembl	69_37n	+1	known	missense	c.707	p.R236Q	1.000	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196	41	0	0.00	23	13	36.11	-	-	-
DDI1	0	genome.wustl.edu	37	11	103907556	103907556	+	Silent	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	11	103907556	103907556	G	A	SNP	DDI1	ENST00000302259	human	ensembl	69_37n	+1	known	silent	c.6	p.L2	0.967	pfscan_Ubiquitin_supergroup	pfam_Peptidase_aspartic_euk-pred,pfam_Ubiquitin,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	10	0	0.00	8	5	38.46	-	-	-
EIF2C4	0	genome.wustl.edu	37	1	36297703	36297703	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	36297703	36297703	G	A	SNP	EIF2C4	ENST00000373210	human	ensembl	69_37n	+1	known	missense	c.1162	p.E388K	1.000	NULL	pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi	-	no_errors	EIF2C4	HGNC	ENSG00000134698	53	0	0.00	39	19	32.76	-	-	-
EMCN	0	genome.wustl.edu	37	4	101396227	101396227	+	Nonsense_Mutation	SNP	G	G	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	4	101396227	101396227	G	C	SNP	EMCN	ENST00000296420	human	ensembl	69_37n	-1	known	nonsense	c.227	p.S76*	0.002	pfam_Endomucin	pfam_Endomucin	-	no_errors	EMCN	HGNC	ENSG00000164035	60	0	0.00	37	12	24.49	-	-	-
FBXW8	0	genome.wustl.edu	37	12	117387426	117387426	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	117387426	117387426	C	T	SNP	FBXW8	ENST00000309909	human	ensembl	69_37n	+1	known	missense	c.592	p.R198C	1.000	superfamily_F-box_dom_cyclin-like,smart_WD40_repeat	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_Quinonprotein_ADH-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW8	HGNC	ENSG00000174989	40	0	0.00	40	12	23.08	-	-	-
HRNR	0	genome.wustl.edu	37	1	152188769	152188769	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	152188769	152188769	C	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5336	p.S1779N	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	16	0	0.00	16	4	20.00	-	-	-
IBSP	0	genome.wustl.edu	37	4	88723821	88723821	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	4	88723821	88723821	C	T	SNP	IBSP	ENST00000226284	human	ensembl	69_37n	+1	known	missense	c.121	p.P41S	1.000	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559	58	0	0.00	33	16	32.65	-	-	-
IFI16	0	genome.wustl.edu	37	1	158985687	158985687	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	158985687	158985687	G	C	SNP	IFI16	ENST00000295809	human	ensembl	69_37n	+1	known	missense	c.291	p.K97N	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	IFI16	HGNC	ENSG00000163565	30	0	0.00	29	11	27.50	-	-	-
IGKV2D-30	0	genome.wustl.edu	37	2	89976205	89976205	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	89976205	89976205	C	G	SNP	IGKV2D-30	ENST00000474213	human	ensembl	69_37n	+1	known	missense	c.76	p.Q26E	1.000	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_stop_codon	IGKV2D-30	HGNC	ENSG00000239571	31	0	0.00	21	13	38.24	-	-	-
KNDC1	0	genome.wustl.edu	37	10	135025332	135025332	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	135025332	135025332	G	C	SNP	KNDC1	ENST00000368572	human	ensembl	69_37n	+1	known	missense	c.4212	p.K1404N	0.987	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798	12	0	0.00	4	4	50.00	-	-	-
KRT79	0	genome.wustl.edu	37	12	53227620	53227620	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	12	53227620	53227620	T	C	SNP	KRT79	ENST00000330553	human	ensembl	69_37n	-1	known	missense	c.425	p.E142G	1.000	pfam_F	pfam_F,superfamily_STAT_TF_coiled-coil,prints_Keratin_II	-	no_errors	KRT79	HGNC	ENSG00000185640	50	0	0.00	39	12	23.53	-	-	-
LRP1B	0	genome.wustl.edu	37	2	141806595	141806595	+	Silent	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	2	141806595	141806595	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	silent	c.1749	p.Q583	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	71	0	0.00	71	28	28.28	-	-	-
LYSMD3	0	genome.wustl.edu	37	5	89814775	89814775	+	Nonsense_Mutation	SNP	G	G	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	89814775	89814775	G	C	SNP	LYSMD3	ENST00000315948	human	ensembl	69_37n	-1	known	nonsense	c.782	p.S261*	1.000	NULL	pfam_Peptidoglycan-bd_lysin,smart_Peptidoglycan-bd_Lysin_subgr	-	no_errors	LYSMD3	HGNC	ENSG00000176018	62	0	0.00	43	22	33.85	-	-	-
MGEA5	0	genome.wustl.edu	37	10	103563692	103563692	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	10	103563692	103563692	T	A	SNP	MGEA5	ENST00000361464	human	ensembl	69_37n	-1	known	missense	c.836	p.D279V	1.000	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408	60	0	0.00	41	19	31.67	-	-	-
MUC16	0	genome.wustl.edu	37	19	9076601	9076601	+	Silent	SNP	T	T	G			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	9076601	9076601	T	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	silent	c.10845	p.T3615	0.036	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	83	0	0.00	45	16	26.23	-	-	-
MUC6	0	genome.wustl.edu	37	11	1016406	1016406	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	11	1016406	1016406	G	A	SNP	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	missense	c.6395	p.S2132F	0.014	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	56	0	0.00	67	27	28.72	-	-	-
NACC1	0	genome.wustl.edu	37	19	13247176	13247176	+	Silent	SNP	C	C	G			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	13247176	13247176	C	G	SNP	NACC1	ENST00000292431	human	ensembl	69_37n	+1	known	silent	c.1077	p.L359	1.000	NULL	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC1	HGNC	ENSG00000160877	32	0	0.00	11	12	52.17	-	-	-
NR3C1	0	genome.wustl.edu	37	5	142680112	142680112	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	5	142680112	142680112	G	A	SNP	NR3C1	ENST00000231509	human	ensembl	69_37n	-1	known	missense	c.1688	p.T563M	0.996	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Glcrtcd_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Glcrtcd_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR3C1	HGNC	ENSG00000113580	54	0	0.00	36	14	28.00	-	-	-
PIK3C2B	0	genome.wustl.edu	37	1	204425124	204425124	+	Silent	SNP	G	G	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	204425124	204425124	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	silent	c.1803	p.C601	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	36	0	0.00	19	6	24.00	-	-	-
PIK3C2B	0	genome.wustl.edu	37	1	204425125	204425125	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	1	204425125	204425125	C	G	SNP	PIK3C2B	ENST00000367187	human	ensembl	69_37n	-1	known	missense	c.1802	p.C601S	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	36	0	0.00	21	6	22.22	-	-	-
PLA2G6	0	genome.wustl.edu	37	22	38509509	38509509	+	Silent	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	22	38509509	38509509	C	T	SNP	PLA2G6	ENST00000332509	human	ensembl	69_37n	-1	known	silent	c.2187	p.K729	0.997	superfamily_Acyl_Trfase/lysoPLipase	pfam_Ankyrin_rpt,pfam_Patatin/PLipase_A2-rel,superfamily_Ankyrin_rpt-contain_dom,superfamily_Acyl_Trfase/lysoPLipase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	PLA2G6	HGNC	ENSG00000184381	38	0	0.00	26	8	23.53	-	-	-
PNRC1	0	genome.wustl.edu	37	6	89793494	89793494	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	6	89793494	89793494	A	C	SNP	PNRC1	ENST00000336032	human	ensembl	69_37n	+1	known	missense	c.563	p.K188T	1.000	NULL	NULL	-	no_errors	PNRC1	HGNC	ENSG00000146278	18	0	0.00	15	10	40.00	-	-	-
RNF213	0	genome.wustl.edu	37	17	78318644	78318644	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	17	78318644	78318644	A	G	SNP	RNF213	ENST00000582970	human	ensembl	69_37n	+1	known	missense	c.6509	p.Y2170C	0.998	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	46	0	0.00	41	26	38.81	-	-	-
SCN5A	0	genome.wustl.edu	37	3	38647465	38647465	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	38647465	38647465	C	A	SNP	SCN5A	ENST00000333535	human	ensembl	69_37n	-1	known	nonsense	c.1315	p.E439*	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	33	0	0.00	28	14	33.33	-	-	-
SMC4	0	genome.wustl.edu	37	3	160148495	160148497	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	160148495	160148497	AGC	-	DEL	SMC4	ENST00000344722	human	ensembl	69_37n	+1	known	in_frame_del	c.2904_2906	p.A970in_frame_del	0.369:0.991:0.993	pfam_RecF/RecN/SMC,superfamily_Prefoldin	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	29	0	0.00	44	12	21.43	-	-	-
SMC4	0	genome.wustl.edu	37	3	160148940	160148941	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	3	160148940	160148941	AT	-	DEL	SMC4	ENST00000344722	human	ensembl	69_37n	+1	known	frame_shift_del	c.3061_3062	p.I1021fs	0.993:1.000	pfam_RecF/RecN/SMC	pfam_RecF/RecN/SMC,pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810	31	0	0.00	16	4	20.00	-	-	-
TMCO3	0	genome.wustl.edu	37	13	114154394	114154394	+	Missense_Mutation	SNP	A	A	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	13	114154394	114154394	A	T	SNP	TMCO3	ENST00000434316	human	ensembl	69_37n	+1	known	missense	c.746	p.Q249L	1.000	NULL	pfam_Cation/H_exchanger	-	no_errors	TMCO3	HGNC	ENSG00000150403	56	0	0.00	41	16	28.07	-	-	-
TP53BP1	0	genome.wustl.edu	37	15	43701236	43701236	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	15	43701236	43701236	T	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.5459	p.Y1820C	1.000	superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	53	0	0.00	32	23	41.82	-	-	-
VSIG1	0	genome.wustl.edu	37	X	107316026	107316026	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	X	107316026	107316026	G	C	SNP	VSIG1	ENST00000415430	human	ensembl	69_37n	+1	known	missense	c.640	p.E214Q	0.923	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	VSIG1	HGNC	ENSG00000101842	56	0	0.00	54	26	32.50	-	-	-
ZNF630	0	genome.wustl.edu	37	X	47926259	47926259	+	Splice_Site	SNP	C	C	T			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	X	47926259	47926259	C	T	SNP	ZNF630	ENST00000409324	human	ensembl	69_37n	-1	known	splice_site	c.15+1	e1+1	0.010	-	-	-	no_errors	ZNF630	HGNC	ENSG00000221994	76	0	0.00	51	29	36.25	-	-	-
ZNF816	0	genome.wustl.edu	37	19	53453802	53453802	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1LB-01A-11D-A142-09	TCGA-E2-A1LB-11A-22D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	377b1816-61e1-431a-9952-71e4d58bbd48	f159d3d3-831d-47ee-8fb0-7665405a5581	19	53453802	53453802	C	A	SNP	ZNF816	ENST00000357666	human	ensembl	69_37n	-1	known	missense	c.1226	p.R409I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257	66	0	0.00	43	23	34.33	-	-	-
