Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CROCCP2	0	genome.wustl.edu	37	1	16950889	16950889	+	RNA	SNP	G	G	A			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	16950889	16950889	G	A	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.470	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	15	0	0.00	17	8	32.00	-	-	-
CYHR1	0	genome.wustl.edu	37	8	145675924	145675924	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	8	145675924	145675924	G	C	SNP	CYHR1	ENST00000438911	human	ensembl	69_37n	-1	known	missense	c.927	p.D309E	0.236	NULL	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	CYHR1	HGNC	ENSG00000187954	44	0	0.00	76	18	19.15	-	-	-
FREM3	0	genome.wustl.edu	37	4	144614306	144614306	+	Silent	SNP	G	G	A			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	4	144614306	144614306	G	A	SNP	FREM3	ENST00000329798	human	ensembl	69_37n	-1	putative	silent	c.5235	p.N1745	0.948	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM3	HGNC	ENSG00000183090	86	0	0.00	85	17	16.67	-	-	-
HIST1H2AK	0	genome.wustl.edu	37	6	27806084	27806084	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	6	27806084	27806084	G	C	SNP	HIST1H2AK	ENST00000330180	human	ensembl	69_37n	-1	known	missense	c.34	p.R12G	0.989	superfamily_Histone-fold,smart_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AK	HGNC	ENSG00000184348	30	0	0.00	29	12	29.27	-	-	-
IGFN1	0	genome.wustl.edu	37	1	201182360	201182360	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	201182360	201182360	C	A	SNP	IGFN1	ENST00000335211	human	ensembl	69_37n	+1	known	missense	c.8339	p.S2780Y	0.003	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGFN1	HGNC	ENSG00000163395	41	0	0.00	49	6	10.91	-	-	-
KIAA0317	0	genome.wustl.edu	37	14	75136706	75136706	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	14	75136706	75136706	C	A	SNP	KIAA0317	ENST00000356357	human	ensembl	69_37n	-1	known	missense	c.1732	p.A578S	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Filamin/ABP280_repeat-like,superfamily_HECT,superfamily_Ig_E-set,smart_HECT,pfscan_Filamin/ABP280_repeat-like,pfscan_HECT	-	no_errors	KIAA0317	HGNC	ENSG00000119682	46	0	0.00	30	4	11.76	-	-	-
MRPS31	0	genome.wustl.edu	37	13	41333214	41333214	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	13	41333214	41333214	C	G	SNP	MRPS31	ENST00000323563	human	ensembl	69_37n	-1	known	missense	c.469	p.A157P	0.999	NULL	NULL	-	no_errors	MRPS31	HGNC	ENSG00000102738	58	0	0.00	63	7	10.00	-	-	-
NARG2	0	genome.wustl.edu	37	15	60720860	60720860	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	15	60720860	60720860	G	C	SNP	NARG2	ENST00000261520	human	ensembl	69_37n	-1	known	missense	c.2588	p.S863C	1.000	pfam_NARG2_C	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915	33	0	0.00	15	6	28.57	-	-	-
OTOF	0	genome.wustl.edu	37	2	26698897	26698897	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	2	26698897	26698897	G	A	SNP	OTOF	ENST00000272371	human	ensembl	69_37n	-1	known	missense	c.2876	p.A959V	0.911	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	OTOF	HGNC	ENSG00000115155	41	0	0.00	37	7	15.91	-	-	-
PPT1	0	genome.wustl.edu	37	1	40544493	40544493	+	RNA	DEL	T	T	-			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	40544493	40544493	T	-	DEL	PPT1	ENST00000372775	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PPT1	HGNC	ENSG00000131238	15	0	0.00	4	3	42.86	-	-	-
PTCD1	0	genome.wustl.edu	37	7	99021452	99021452	+	Silent	SNP	T	T	C			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	7	99021452	99021452	T	C	SNP	PTCD1	ENST00000555673	human	ensembl	69_37n	-1	known	silent	c.2013	p.E671	0.991	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	PTCD1	HGNC	ENSG00000106246	63	0	0.00	70	19	21.35	-	-	-
RPL6	0	genome.wustl.edu	37	12	112846113	112846113	+	Silent	SNP	G	G	C			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	12	112846113	112846113	G	C	SNP	RPL6	ENST00000202773	human	ensembl	69_37n	-1	known	silent	c.267	p.L89	0.291	pfam_Ribosomal_L6_N	pfam_Ribosomal_L6E,pfam_Ribosomal_L6_N,superfamily_Translation_prot_SH3-like	-	no_errors	RPL6	HGNC	ENSG00000089009	73	0	0.00	66	21	23.60	-	-	-
SYNPR	0	genome.wustl.edu	37	3	63466619	63466619	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	3	63466619	63466619	G	C	SNP	SYNPR	ENST00000478300	human	ensembl	69_37n	+1	known	missense	c.196	p.A66P	1.000	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	pfam_MARVEL-like_dom,prints_Synaptophysin/porin	-	no_errors	SYNPR	HGNC	ENSG00000163630	62	0	0.00	50	17	25.37	-	-	-
TAF1B	0	genome.wustl.edu	37	2	9989571	9989571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	2	9989571	9989571	A	-	DEL	TAF1B	ENST00000263663	human	ensembl	69_37n	+1	known	frame_shift_del	c.187	p.N66fs	0.991	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	28	0	0.00	26	4	13.33	-	-	-
USH2A	0	genome.wustl.edu	37	1	215932045	215932045	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1LI-01A-12D-A159-09	TCGA-E2-A1LI-11A-23D-A17G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c812374c-8bc9-4ccf-9157-fbd9d162ee1e	21e814d9-cef6-4f92-8ace-592086fc309f	1	215932045	215932045	C	T	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.11281	p.D3761N	0.978	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	95	0	0.00	132	65	32.99	-	-	-
