Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ASF1A	0	genome.wustl.edu	37	6	119228580	119228580	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	6	119228580	119228580	T	-	DEL	ASF1A	ENST00000229595	human	ensembl	69_37n	+1	known	frame_shift_del	c.416	p.L140fs	1.000	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1A	HGNC	ENSG00000111875	76	0	0.00	36	13	26.53	-	-	-
ASXL3	0	genome.wustl.edu	37	18	31325521	31325521	+	Silent	SNP	G	G	A			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	18	31325521	31325521	G	A	SNP	ASXL3	ENST00000269197	human	ensembl	69_37n	+1	known	silent	c.5709	p.S1903	0.003	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431	52	0	0.00	31	6	16.22	-	-	-
C1QTNF3	0	genome.wustl.edu	37	5	34024111	34024111	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	5	34024111	34024111	C	A	SNP	C1QTNF3	ENST00000382065	human	ensembl	69_37n	-1	known	missense	c.703	p.V235L	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196	53	0	0.00	51	11	17.74	-	-	-
COL4A5	0	genome.wustl.edu	37	X	107823802	107823802	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	X	107823802	107823802	A	G	SNP	COL4A5	ENST00000328300	human	ensembl	69_37n	+1	known	missense	c.820	p.I274V	0.789	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	96	0	0.00	95	18	15.93	-	-	-
DYRK4	0	genome.wustl.edu	37	12	4708239	4708239	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	12	4708239	4708239	C	A	SNP	DYRK4	ENST00000010132	human	ensembl	69_37n	+1	known	missense	c.606	p.F202L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219	82	0	0.00	75	10	11.76	-	-	-
NCAPG	0	genome.wustl.edu	37	4	17819064	17819064	+	Missense_Mutation	SNP	A	A	T			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	4	17819064	17819064	A	T	SNP	NCAPG	ENST00000251496	human	ensembl	69_37n	+1	known	missense	c.956	p.N319I	0.205	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805	66	0	0.00	42	5	10.64	-	-	-
OPLAH	0	genome.wustl.edu	37	8	145106682	145106682	+	RNA	DEL	T	T	-			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	8	145106682	145106682	T	-	DEL	OPLAH	ENST00000426825	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OPLAH	HGNC	ENSG00000178814	19	0	0.00	9	2	18.18	-	-	-
PHF12	0	genome.wustl.edu	37	17	27239625	27239625	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	17	27239625	27239625	G	A	SNP	PHF12	ENST00000332830	human	ensembl	69_37n	-1	known	missense	c.1964	p.T655I	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	46	0	0.00	44	6	12.00	-	-	-
PPP1R17	0	genome.wustl.edu	37	7	31735165	31735165	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	7	31735165	31735165	T	A	SNP	PPP1R17	ENST00000342032	human	ensembl	69_37n	+1	known	missense	c.165	p.N55K	0.005	NULL	NULL	-	no_errors	PPP1R17	HGNC	ENSG00000106341	70	0	0.00	74	10	11.90	-	-	-
PSG1	0	genome.wustl.edu	37	19	43382212	43382212	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	19	43382212	43382212	A	G	SNP	PSG1	ENST00000312439	human	ensembl	69_37n	-1	known	missense	c.283	p.Y95H	0.003	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	PSG1	HGNC	ENSG00000231924	124	0	0.00	92	21	18.58	-	-	-
