Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AATK-AS1	0	genome.wustl.edu	37	17	79152856	79152856	+	RNA	SNP	G	G	A			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	79152856	79152856	G	A	SNP	AATK-AS1	ENST00000414089	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AATK-AS1	HGNC	ENSG00000225180	23	0	0.00	39	8	17.02	-	-	-
ATP10A	0	genome.wustl.edu	37	15	25966903	25966903	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	15	25966903	25966903	G	C	SNP	ATP10A	ENST00000356865	human	ensembl	69_37n	-1	known	missense	c.1264	p.Q422E	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP10A	HGNC	ENSG00000206190	40	0	0.00	72	23	23.96	-	-	-
CHST2	0	genome.wustl.edu	37	3	142840438	142840438	+	Silent	SNP	G	G	A			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	3	142840438	142840438	G	A	SNP	CHST2	ENST00000309575	human	ensembl	69_37n	+1	known	silent	c.780	p.S260	0.092	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040	9	0	0.00	8	4	33.33	-	-	-
CLIC3	0	genome.wustl.edu	37	9	139889217	139889217	+	Silent	SNP	C	C	T			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	9	139889217	139889217	C	T	SNP	CLIC3	ENST00000494426	human	ensembl	69_37n	-1	known	silent	c.627	p.A209	0.033	superfamily_Glutathione-S-Trfase_C-like	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel	-	no_errors	CLIC3	HGNC	ENSG00000169583	16	0	0.00	21	11	34.38	-	-	-
CRIPAK	0	genome.wustl.edu	37	4	1388806	1388807	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	4	1388806	1388807	-	CA	INS	CRIPAK	ENST00000324803	human	ensembl	69_37n	+1	known	frame_shift_ins	c.507_508	p.C171fs	0.000:0.001	smart_Post-SET_dom	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979	22	0	0.00	20	4	16.67	-	-	-
CTCF	0	genome.wustl.edu	37	16	67645934	67645934	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	16	67645934	67645934	C	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	+1	known	missense	c.862	p.H288D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	27	0	0.00	43	32	42.67	-	-	-
DNAH2	0	genome.wustl.edu	37	17	7708590	7708590	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	7708590	7708590	G	C	SNP	DNAH2	ENST00000389173	human	ensembl	69_37n	+1	known	missense	c.9321	p.K3107N	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	35	0	0.00	77	24	23.76	-	-	-
GPR98	0	genome.wustl.edu	37	5	89948176	89948176	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	5	89948176	89948176	C	T	SNP	GPR98	ENST00000405460	human	ensembl	69_37n	+1	known	nonsense	c.3430	p.R1144*	0.999	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	59	0	0.00	125	45	26.47	-	-	-
HERC1	0	genome.wustl.edu	37	15	64005094	64005094	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	15	64005094	64005094	C	-	DEL	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	frame_shift_del	c.4464	p.S1489fs	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	30	0	0.00	61	21	25.30	-	-	-
MAGEC3	0	genome.wustl.edu	37	X	140983249	140983249	+	Silent	SNP	G	G	A			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	X	140983249	140983249	G	A	SNP	MAGEC3	ENST00000448920	human	ensembl	69_37n	+1	known	silent	c.360	p.P120	0.000	NULL	NULL	-	no_errors	MAGEC3	HGNC	ENSG00000165509	21	0	0.00	31	20	39.22	-	-	-
MARCH10	0	genome.wustl.edu	37	17	60865932	60865932	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	17	60865932	60865932	C	T	SNP	MARCH10	ENST00000311269	human	ensembl	69_37n	-1	known	missense	c.119	p.R40K	0.539	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838	55	0	0.00	104	41	28.28	-	-	-
MED19	0	genome.wustl.edu	37	11	57472466	57472467	+	Frame_Shift_Ins	INS	-	-	C			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	11	57472466	57472467	-	C	INS	MED19	ENST00000431606	human	ensembl	69_37n	-1	known	frame_shift_ins	c.453_452	p.F152fs	0.999:1.000	pfam_Mediator_Med19_met	pfam_Mediator_Med19_met,pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	MED19	HGNC	ENSG00000156603	17	0	0.00	48	19	28.36	-	-	-
NOTCH2	0	genome.wustl.edu	37	1	120458435	120458436	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	1	120458435	120458436	-	G	INS	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	frame_shift_ins	c.6910_6909	p.I2303fs	0.997:0.957	pirsf_Notch,prints_Notch_2	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	13	0	0.00	32	11	25.58	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	26	0	0.00	57	26	31.33	-	-	-
PRR14	0	genome.wustl.edu	37	16	30667597	30667597	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	16	30667597	30667597	G	A	SNP	PRR14	ENST00000300835	human	ensembl	69_37n	+1	known	missense	c.1723	p.E575K	0.991	NULL	NULL	-	no_errors	PRR14	HGNC	ENSG00000156858	12	0	0.00	22	7	24.14	-	-	-
TBC1D4	0	genome.wustl.edu	37	13	75884201	75884201	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A227-01A-11D-A159-09	TCGA-E9-A227-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	15eb25c4-f4a7-446e-b654-ae39ccd2cf00	1f80b7f1-4b76-4815-9cc7-05318f7fa529	13	75884201	75884201	C	T	SNP	TBC1D4	ENST00000377636	human	ensembl	69_37n	-1	known	missense	c.2470	p.E824K	0.832	pfam_DUF3350	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTyr_interaction_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTyr_interaction_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTyr_interaction_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111	54	0	0.00	119	40	25.16	-	-	-
