Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ATP11A	0	genome.wustl.edu	37	13	113512220	113512220	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	13	113512220	113512220	C	T	SNP	ATP11A	ENST00000375630	human	ensembl	69_37n	+1	known	missense	c.2507	p.A836V	1.000	superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11A	HGNC	ENSG00000068650	59	0	0.00	78	32	29.09	-	-	-
B2M	0	genome.wustl.edu	37	15	45007801	45007801	+	Missense_Mutation	SNP	A	A	T			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	15	45007801	45007801	A	T	SNP	B2M	ENST00000544417	human	ensembl	69_37n	+1	known	missense	c.248	p.Y83F	0.989	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	B2M	HGNC	ENSG00000166710	76	0	0.00	82	20	19.61	-	-	-
C3	0	genome.wustl.edu	37	19	6712375	6712375	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	19	6712375	6712375	G	C	SNP	C3	ENST00000245907	human	ensembl	69_37n	-1	known	missense	c.1162	p.P388A	0.376	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC	ENSG00000125730	36	0	0.00	56	11	16.42	-	-	-
DNAH14	0	genome.wustl.edu	37	1	225230754	225230754	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	1	225230754	225230754	A	-	DEL	DNAH14	ENST00000430092	human	ensembl	69_37n	+1	known	frame_shift_del	c.1706	p.E569fs	0.006	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,superfamily_Tautomerase,smart_AAA+_ATPase	-	no_errors	DNAH14	HGNC	ENSG00000185842	27	0	0.00	40	5	11.11	-	-	-
EPC1	0	genome.wustl.edu	37	10	32558007	32558007	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	10	32558007	32558007	G	A	SNP	EPC1	ENST00000263062	human	ensembl	69_37n	-1	known	missense	c.2495	p.A832V	1.000	pfam_Enhancer_polycomb_C	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	80	0	0.00	121	19	13.57	-	-	-
IDE	0	genome.wustl.edu	37	10	94234712	94234712	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	10	94234712	94234712	G	A	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	nonsense	c.2002	p.R668*	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	45	0	0.00	46	6	11.54	-	-	-
IFI35	0	genome.wustl.edu	37	17	41165618	41165618	+	Silent	SNP	C	C	T			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	17	41165618	41165618	C	T	SNP	IFI35	ENST00000438323	human	ensembl	69_37n	+1	known	silent	c.507	p.G169	0.097	pfam_Nmi/IFP35	pfam_Nmi/IFP35,pfam_Interferon_induced_35kDa_N	-	no_errors	IFI35	HGNC	ENSG00000068079	70	0	0.00	95	15	13.64	-	-	-
LRBA	0	genome.wustl.edu	37	4	151935687	151935687	+	Silent	SNP	T	T	C			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	4	151935687	151935687	T	C	SNP	LRBA	ENST00000357115	human	ensembl	69_37n	-1	known	silent	c.108	p.K36	0.917	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	39	0	0.00	40	6	13.04	-	-	-
LUC7L3	0	genome.wustl.edu	37	17	48818484	48818484	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	17	48818484	48818484	C	-	DEL	LUC7L3	ENST00000240304	human	ensembl	69_37n	+1	known	frame_shift_del	c.228	p.F76fs	0.997	pfam_LUC7-rel	pfam_LUC7-rel	-	no_errors	LUC7L3	HGNC	ENSG00000108848	53	0	0.00	69	22	24.18	-	-	-
MPEG1	0	genome.wustl.edu	37	11	58979086	58979086	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	11	58979086	58979086	G	A	SNP	MPEG1	ENST00000361050	human	ensembl	69_37n	-1	known	missense	c.1253	p.P418L	0.066	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	42	0	0.00	42	7	14.29	-	-	-
NIN	0	genome.wustl.edu	37	14	51243678	51243678	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	14	51243678	51243678	C	A	SNP	NIN	ENST00000245441	human	ensembl	69_37n	-1	known	missense	c.655	p.V219L	0.001	NULL	superfamily_tRNA-bd_arm,pfscan_EF_HAND_2	-	no_errors	NIN	HGNC	ENSG00000100503	31	0	0.00	45	11	19.64	-	-	-
ODF2	0	genome.wustl.edu	37	9	131221854	131221854	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	9	131221854	131221854	C	T	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	+1	known	missense	c.41	p.S14L	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	41	0	0.00	57	9	13.64	-	-	-
OR2T33	0	genome.wustl.edu	37	1	248436655	248436655	+	Silent	SNP	C	C	G			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	1	248436655	248436655	C	G	SNP	OR2T33	ENST00000318021	human	ensembl	69_37n	-1	known	silent	c.462	p.G154	0.038	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	40	0	0.00	96	16	14.29	-	-	-
PLCB4	0	genome.wustl.edu	37	20	9417764	9417764	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	20	9417764	9417764	C	T	SNP	PLCB4	ENST00000334005	human	ensembl	69_37n	+1	known	missense	c.2693	p.T898M	0.996	pirsf_PLC-beta	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333	18	0	0.00	43	10	18.87	-	-	-
PLOD3	0	genome.wustl.edu	37	7	100856163	100856163	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	7	100856163	100856163	C	G	SNP	PLOD3	ENST00000223127	human	ensembl	69_37n	-1	known	missense	c.839	p.G280A	0.980	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD3	HGNC	ENSG00000106397	16	0	0.00	17	6	26.09	-	-	-
TP53	0	genome.wustl.edu	37	17	7579344	7579344	+	Frame_Shift_Del	DEL	G	G	-			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	17	7579344	7579344	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.343	p.H115fs	0.938	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	19	0	0.00	21	7	24.14	-	-	-
WNK1	0	genome.wustl.edu	37	12	970297	970297	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	12	970297	970297	A	-	DEL	WNK1	ENST00000530271	human	ensembl	69_37n	+1	known	frame_shift_del	c.1739	p.K583fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	19	0	0.00	14	4	21.05	-	-	-
ZBTB9	0	genome.wustl.edu	37	6	33423544	33423544	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	6	33423544	33423544	G	A	SNP	ZBTB9	ENST00000395064	human	ensembl	69_37n	+1	known	missense	c.667	p.D223N	0.807	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588	20	0	0.00	25	7	21.88	-	-	-
ZNF717	0	genome.wustl.edu	37	3	75790810	75790811	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E9-A248-01A-11D-A167-09	TCGA-E9-A248-10A-01D-A167-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fee90b4e-f005-4b40-a9af-d1e590b1e8a8	6964baa2-3344-49db-ad80-1e28ae93e53c	3	75790810	75790811	-	T	INS	ZNF717	ENST00000422325	human	ensembl	69_37n	-1	known	frame_shift_ins	c.135_134	p.L46fs	0.999:0.997	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF717	HGNC	ENSG00000227124	19	0	0.00	31	7	18.42	-	-	-
