Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CDH1	0	genome.wustl.edu	37	16	68849641	68849642	+	In_Frame_Ins	INS	-	-	ATA			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	16	68849641	68849642	-	ATA	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	in_frame_ins	c.1544_1545	p.FME516in_frame_ins*	0.000:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	72	0	0.00	51	13	20.31	-	-	-
CDR1	0	genome.wustl.edu	37	X	139865867	139865867	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	X	139865867	139865867	C	T	SNP	CDR1	ENST00000370532	human	ensembl	69_37n	-1	known	missense	c.665	p.G222E	0.999	NULL	NULL	-	no_errors	CDR1	HGNC	ENSG00000184258	94	0	0.00	107	17	13.71	-	-	-
COMT	0	genome.wustl.edu	37	22	19956088	19956088	+	Silent	SNP	G	G	T			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	22	19956088	19956088	G	T	SNP	COMT	ENST00000361682	human	ensembl	69_37n	+1	known	silent	c.645	p.V215	1.000	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	-	no_errors	COMT	HGNC	ENSG00000093010	40	0	0.00	35	4	10.26	-	-	-
EPAS1	0	genome.wustl.edu	37	2	46524981	46524981	+	RNA	SNP	G	G	A			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	2	46524981	46524981	G	A	SNP	EPAS1	ENST00000467888	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.243	-	-	-	no_errors	EPAS1	HGNC	ENSG00000116016	45	0	0.00	32	5	13.51	-	-	-
EPB41	0	genome.wustl.edu	37	1	29445598	29445598	+	RNA	SNP	A	A	G			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	1	29445598	29445598	A	G	SNP	EPB41	ENST00000460378	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EPB41	HGNC	ENSG00000159023	9	0	0.00	5	4	44.44	-	-	-
EXOC3L2	0	genome.wustl.edu	37	19	45735069	45735069	+	Silent	SNP	G	G	A			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	19	45735069	45735069	G	A	SNP	EXOC3L2	ENST00000252482	human	ensembl	69_37n	-1	known	silent	c.42	p.S14	0.339	pfam_Sec6	pfam_Sec6,superfamily_Tet_transcr_reg_TetR-rel_C	-	no_errors	EXOC3L2	HGNC	ENSG00000130201	53	0	0.00	71	20	21.98	-	-	-
GABBR1	0	genome.wustl.edu	37	6	29598304	29598304	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	6	29598304	29598304	G	A	SNP	GABBR1	ENST00000377034	human	ensembl	69_37n	-1	known	missense	c.406	p.H136Y	1.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	45	0	0.00	24	9	27.27	-	-	-
KIF20B	0	genome.wustl.edu	37	10	91474824	91474824	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	10	91474824	91474824	C	G	SNP	KIF20B	ENST00000416354	human	ensembl	69_37n	+1	known	missense	c.825	p.F275L	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182	43	0	0.00	42	6	12.50	-	-	-
LMBRD1	0	genome.wustl.edu	37	6	70500244	70500244	+	Silent	SNP	G	G	A			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	6	70500244	70500244	G	A	SNP	LMBRD1	ENST00000370577	human	ensembl	69_37n	-1	known	silent	c.190	p.L64	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216	56	0	0.00	56	11	16.42	-	-	-
LRRC4B	0	genome.wustl.edu	37	19	51021608	51021608	+	Silent	SNP	C	C	T			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	19	51021608	51021608	C	T	SNP	LRRC4B	ENST00000389201	human	ensembl	69_37n	-1	known	silent	c.1362	p.S454	0.967	smart_Ig_sub	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRRC4B	HGNC	ENSG00000131409	50	0	0.00	77	13	14.44	-	-	-
MYOF	0	genome.wustl.edu	37	10	95088666	95088666	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	10	95088666	95088666	G	C	SNP	MYOF	ENST00000359263	human	ensembl	69_37n	-1	known	missense	c.4985	p.S1662C	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_C2_Ca-dep,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Peroxin/Ferlin,pfscan_C2_membr_targeting	-	no_errors	MYOF	HGNC	ENSG00000138119	87	0	0.00	89	20	18.35	-	-	-
NSL1	0	genome.wustl.edu	37	1	212965024	212965024	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	1	212965024	212965024	C	G	SNP	NSL1	ENST00000366977	human	ensembl	69_37n	-1	known	missense	c.82	p.V28L	0.005	NULL	pfam_Kinetochore_Mis14	-	no_errors	NSL1	HGNC	ENSG00000117697	81	0	0.00	91	18	16.51	-	-	-
NXF2	0	genome.wustl.edu	37	X	101576790	101576790	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	X	101576790	101576790	C	T	SNP	NXF2	ENST00000330252	human	ensembl	69_37n	+1	known	missense	c.1286	p.P429L	0.005	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF2	HGNC	ENSG00000185554	82	0	0.00	91	20	18.02	-	-	-
RDH8	0	genome.wustl.edu	37	19	10124259	10124259	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	19	10124259	10124259	C	T	SNP	RDH8	ENST00000591589	human	ensembl	69_37n	+1	known	missense	c.146	p.P49L	0.493	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH8	HGNC	ENSG00000080511	38	0	0.00	37	7	15.91	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36164851	36164852	+	Frame_Shift_Ins	INS	-	-	G			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	21	36164851	36164852	-	G	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1024_1023	p.I341fs	1.000:1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	16	0	0.00	28	7	20.00	-	-	-
STAMBP	0	genome.wustl.edu	37	2	74072326	74072326	+	Missense_Mutation	SNP	A	A	C			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	2	74072326	74072326	A	C	SNP	STAMBP	ENST00000339566	human	ensembl	69_37n	+1	known	missense	c.312	p.E104D	1.000	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	STAMBP	HGNC	ENSG00000124356	63	0	0.00	47	7	12.96	-	-	-
TDRD9	0	genome.wustl.edu	37	14	104470647	104470647	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	14	104470647	104470647	C	G	SNP	TDRD9	ENST00000409874	human	ensembl	69_37n	+1	known	missense	c.1556	p.P519R	0.966	pfscan_Helicase_C	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414	98	0	0.00	91	14	13.33	-	-	-
UBA5	0	genome.wustl.edu	37	3	132389818	132389818	+	Silent	SNP	G	G	C			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	3	132389818	132389818	G	C	SNP	UBA5	ENST00000356232	human	ensembl	69_37n	+1	known	silent	c.504	p.G168	0.298	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA5	HGNC	ENSG00000081307	68	0	0.00	55	10	15.38	-	-	-
USP12	0	genome.wustl.edu	37	13	27664065	27664065	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	13	27664065	27664065	T	C	SNP	USP12	ENST00000282344	human	ensembl	69_37n	-1	known	missense	c.689	p.K230R	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP12	HGNC	ENSG00000152484	17	0	0.00	21	8	27.59	-	-	-
ZNF532	0	genome.wustl.edu	37	18	56587855	56587855	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A3X8-01A-31D-A22X-09	TCGA-E9-A3X8-10B-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	66af5537-ae26-4931-826c-1a1e1366a61c	504c075a-6994-4a8e-8e61-503d82e241ea	18	56587855	56587855	C	T	SNP	ZNF532	ENST00000336078	human	ensembl	69_37n	+1	known	missense	c.2336	p.T779M	0.998	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF532	HGNC	ENSG00000074657	43	0	0.00	36	5	12.20	-	-	-
