Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABL1	0	genome.wustl.edu	37	9	133753945	133753945	+	Missense_Mutation	SNP	A	A	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	9	133753945	133753945	A	T	SNP	ABL1	ENST00000372348	human	ensembl	69_37n	+1	known	missense	c.1471	p.M491L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007	36	0	0.00	44	12	21.43	-	-	-
ACAN	0	genome.wustl.edu	37	15	89401123	89401123	+	Silent	SNP	A	A	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	15	89401123	89401123	A	T	SNP	ACAN	ENST00000439576	human	ensembl	69_37n	+1	known	silent	c.5307	p.A1769	0.117	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EGF-like_dom,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EGF-like,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	65	0	0.00	99	29	22.66	-	-	-
ANKZF1	0	genome.wustl.edu	37	2	220100577	220100577	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	220100577	220100577	G	A	SNP	ANKZF1	ENST00000323348	human	ensembl	69_37n	+1	known	missense	c.1951	p.A651T	0.827	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKZF1	HGNC	ENSG00000163516	14	0	0.00	17	9	33.33	-	-	-
BRCA1	0	genome.wustl.edu	37	17	41244296	41244296	+	Silent	SNP	A	A	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	17	41244296	41244296	A	T	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	silent	c.3252	p.L1084	0.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	33	0	0.00	33	7	17.50	-	-	-
BTK	0	genome.wustl.edu	37	X	100615095	100615095	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	100615095	100615095	C	T	SNP	BTK	ENST00000308731	human	ensembl	69_37n	-1	known	missense	c.820	p.D274N	1.000	pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	73	0	0.00	51	36	41.38	-	-	-
C21orf37	0	genome.wustl.edu	37	21	18814102	18814102	+	Nonsense_Mutation	SNP	G	G	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	21	18814102	18814102	G	T	SNP	C21orf37	ENST00000440664	human	ensembl	69_37n	+1	known	nonsense	c.4	p.E2*	0.000	NULL	NULL	-	no_errors	C21orf37	HGNC	ENSG00000232560	27	0	0.00	25	4	13.79	-	-	-
CEACAM18	0	genome.wustl.edu	37	19	51984799	51984799	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	19	51984799	51984799	C	A	SNP	CEACAM18	ENST00000451626	human	ensembl	69_37n	+1	known	missense	c.736	p.P246T	0.002	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	CEACAM18	HGNC	ENSG00000213822	72	0	0.00	57	23	28.75	-	-	-
COL6A1	0	genome.wustl.edu	37	21	47423450	47423450	+	Silent	SNP	C	C	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	21	47423450	47423450	C	T	SNP	COL6A1	ENST00000361866	human	ensembl	69_37n	+1	known	silent	c.2610	p.D870	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	28	0	0.00	31	15	32.61	-	-	-
DHRS4	0	genome.wustl.edu	37	14	24424346	24424346	+	Silent	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	24424346	24424346	G	A	SNP	DHRS4	ENST00000313250	human	ensembl	69_37n	+1	known	silent	c.231	p.Q77	0.984	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	DHRS4	HGNC	ENSG00000157326	45	0	0.00	71	8	10.00	-	-	-
FAM22D	0	genome.wustl.edu	37	10	89125892	89125892	+	RNA	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	10	89125892	89125892	G	A	SNP	FAM22D	ENST00000465545	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM22D	HGNC	ENSG00000214562	17	0	0.00	23	9	28.12	-	-	-
GAN	0	genome.wustl.edu	37	16	81391441	81391441	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	16	81391441	81391441	G	A	SNP	GAN	ENST00000248272	human	ensembl	69_37n	+1	known	missense	c.878	p.R293Q	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000127688	71	0	0.00	39	30	43.48	-	-	-
HNRNPF	0	genome.wustl.edu	37	10	43882627	43882627	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	10	43882627	43882627	A	G	SNP	HNRNPF	ENST00000337970	human	ensembl	69_37n	-1	known	missense	c.706	p.Y236H	1.000	NULL	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPF	HGNC	ENSG00000169813	56	0	0.00	60	27	31.03	-	-	-
IDS	0	genome.wustl.edu	37	X	148584951	148584951	+	Silent	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	148584951	148584951	G	A	SNP	IDS	ENST00000340855	human	ensembl	69_37n	-1	known	silent	c.309	p.Y103	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	36	0	0.00	42	21	33.33	-	-	-
KLF6	0	genome.wustl.edu	37	10	3821561	3821561	+	RNA	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	10	3821561	3821561	G	A	SNP	KLF6	ENST00000173785	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KLF6	HGNC	ENSG00000067082	8	0	0.00	5	8	61.54	-	-	-
KRT13	0	genome.wustl.edu	37	17	39659272	39659272	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	17	39659272	39659272	G	A	SNP	KRT13	ENST00000246635	human	ensembl	69_37n	-1	known	missense	c.814	p.R272C	1.000	pfam_F,superfamily_Prefoldin,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401	26	0	0.00	35	12	25.53	-	-	-
LINC00650	0	genome.wustl.edu	37	21	35335100	35335100	+	RNA	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	21	35335100	35335100	G	A	SNP	LINC00650	ENST00000381181	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.117	-	-	-	no_errors	LINC00650	HGNC	ENSG00000205673	34	0	0.00	36	10	21.74	-	-	-
LRRC42	0	genome.wustl.edu	37	1	54417833	54417833	+	Missense_Mutation	SNP	A	A	C			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	1	54417833	54417833	A	C	SNP	LRRC42	ENST00000319223	human	ensembl	69_37n	+1	known	missense	c.161	p.E54A	1.000	NULL	NULL	-	no_errors	LRRC42	HGNC	ENSG00000116212	44	0	0.00	47	28	37.33	-	-	-
LUZP1	0	genome.wustl.edu	37	1	23418097	23418097	+	Silent	SNP	A	A	G			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	1	23418097	23418097	A	G	SNP	LUZP1	ENST00000302291	human	ensembl	69_37n	-1	known	silent	c.2658	p.P886	0.000	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641	56	0	0.00	57	19	25.00	-	-	-
MAGEE2	0	genome.wustl.edu	37	X	75004573	75004573	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	75004573	75004573	G	A	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.314	p.T105M	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	17	0	0.00	19	9	32.14	-	-	-
MBIP	0	genome.wustl.edu	37	14	36783731	36783731	+	Missense_Mutation	SNP	A	A	C			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	36783731	36783731	A	C	SNP	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	missense	c.558	p.I186M	1.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	30	0	0.00	31	15	32.61	-	-	-
MBIP	0	genome.wustl.edu	37	14	36783732	36783732	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	36783732	36783732	A	G	SNP	MBIP	ENST00000416007	human	ensembl	69_37n	-1	known	missense	c.557	p.I186T	1.000	NULL	NULL	-	no_errors	MBIP	HGNC	ENSG00000151332	30	0	0.00	31	15	32.61	-	-	-
MIR4477A	0	genome.wustl.edu	37	9	68415353	68415353	+	RNA	SNP	T	T	G			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	9	68415353	68415353	T	G	SNP	MIR4477A	ENST00000581659	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.189	-	-	-	no_errors	MIR4477A	HGNC	ENSG00000266017	12	0	0.00	8	5	38.46	-	-	-
MIR508	0	genome.wustl.edu	37	X	146318500	146318500	+	RNA	SNP	T	T	C			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	146318500	146318500	T	C	SNP	MIR508	ENST00000384857	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	MIR508	HGNC	ENSG00000207589	47	0	0.00	27	25	48.08	-	-	-
NACAD	0	genome.wustl.edu	37	7	45123881	45123881	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	7	45123881	45123881	C	T	SNP	NACAD	ENST00000490531	human	ensembl	69_37n	-1	known	missense	c.1898	p.G633D	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx,pfscan_Nas_poly-pep-assoc_cplx	-	no_errors	NACAD	HGNC	ENSG00000136274	38	0	0.00	101	20	16.39	-	-	-
NWD1	0	genome.wustl.edu	37	19	16908579	16908579	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	19	16908579	16908579	C	T	SNP	NWD1	ENST00000379808	human	ensembl	69_37n	+1	known	missense	c.3341	p.S1114L	0.354	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039	43	0	0.00	38	21	35.59	-	-	-
NYNRIN	0	genome.wustl.edu	37	14	24878032	24878032	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	14	24878032	24878032	C	A	SNP	NYNRIN	ENST00000382554	human	ensembl	69_37n	+1	known	nonsense	c.1032	p.C344*	0.390	NULL	pfam_RNase_Zc3h12,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	-	no_errors	NYNRIN	HGNC	ENSG00000205978	31	0	0.00	41	15	26.79	-	-	-
RBMXL3	0	genome.wustl.edu	37	X	114426378	114426378	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	X	114426378	114426378	G	A	SNP	RBMXL3	ENST00000424776	human	ensembl	69_37n	+1	known	missense	c.2374	p.G792R	0.932	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	50	0	0.00	81	48	37.21	-	-	-
RCN1	0	genome.wustl.edu	37	11	32124950	32124950	+	Frame_Shift_Del	DEL	A	A	-			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	11	32124950	32124950	A	-	DEL	RCN1	ENST00000054950	human	ensembl	69_37n	+1	known	frame_shift_del	c.812	p.H271fs	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	77	0	0.00	78	21	21.21	-	-	-
RCN1	0	genome.wustl.edu	37	11	32124952	32124953	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	11	32124952	32124953	TG	-	DEL	RCN1	ENST00000054950	human	ensembl	69_37n	+1	known	frame_shift_del	c.814_815	p.W272fs	1.000:1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	RCN1	HGNC	ENSG00000049449	82	0	0.00	78	21	21.21	-	-	-
RNF187	0	genome.wustl.edu	37	1	228681782	228681782	+	RNA	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	1	228681782	228681782	G	A	SNP	RNF187	ENST00000482739	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNF187	HGNC	ENSG00000168159	10	0	0.00	10	10	50.00	-	-	-
SCN2A	0	genome.wustl.edu	37	2	166179831	166179831	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	166179831	166179831	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	69_37n	+1	known	missense	c.1837	p.V613M	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	33	0	0.00	30	16	34.78	-	-	-
SPRED2	0	genome.wustl.edu	37	2	65561392	65561392	+	Silent	SNP	C	C	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	65561392	65561392	C	T	SNP	SPRED2	ENST00000426832	human	ensembl	69_37n	-1	known	silent	c.258	p.E86	0.254	NULL	pfam_EVH1,pfscan_EVH1	-	no_start_codon	SPRED2	HGNC	ENSG00000198369	26	0	0.00	29	4	12.12	-	-	-
TGM2	0	genome.wustl.edu	37	20	36766789	36766789	+	Splice_Site	SNP	T	T	C			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	20	36766789	36766789	T	C	SNP	TGM2	ENST00000361475	human	ensembl	69_37n	-1	known	splice_site	c.1343-2	e10-2	1.000	-	-	-	no_errors	TGM2	HGNC	ENSG00000198959	38	0	0.00	45	22	32.84	-	-	-
TMEM196	0	genome.wustl.edu	37	7	19765246	19765246	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	7	19765246	19765246	C	-	DEL	TMEM196	ENST00000405764	human	ensembl	69_37n	-1	known	frame_shift_del	c.350	p.G117fs	1.000	NULL	NULL	-	no_errors	TMEM196	HGNC	ENSG00000173452	59	0	0.00	80	33	29.20	-	-	-
TRBV7-3	0	genome.wustl.edu	37	7	142247285	142247285	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	7	142247285	142247285	G	C	SNP	TRBV7-3	ENST00000390361	human	ensembl	69_37n	-1	known	missense	c.171	p.S57R	0.000	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV7-3	HGNC	ENSG00000211714	15	0	0.00	31	9	22.50	-	-	-
TRBV7-3	0	genome.wustl.edu	37	7	142247288	142247288	+	Silent	SNP	T	T	C			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	7	142247288	142247288	T	C	SNP	TRBV7-3	ENST00000390361	human	ensembl	69_37n	-1	known	silent	c.168	p.Q56	0.005	pfam_Ig_V-set,pfscan_Ig-like	pfam_Ig_V-set,pfscan_Ig-like	-	no_stop_codon:bad_bp_length_for_coding_region	TRBV7-3	HGNC	ENSG00000211714	15	0	0.00	26	12	31.58	-	-	-
TTN	0	genome.wustl.edu	37	2	179439401	179439401	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	2	179439401	179439401	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.63754	p.A21252S	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	53	0	0.00	42	8	16.00	-	-	-
UCA1	0	genome.wustl.edu	37	19	15940075	15940075	+	RNA	SNP	T	T	C			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	19	15940075	15940075	T	C	SNP	UCA1	ENST00000397381	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	UCA1	HGNC	ENSG00000214049	18	0	0.00	15	27	64.29	-	-	-
USP4	0	genome.wustl.edu	37	3	49377435	49377435	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	3	49377435	49377435	C	T	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.23	p.R8H	0.341	NULL	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	41	0	0.00	37	32	46.38	-	-	-
ZNF334	0	genome.wustl.edu	37	20	45130701	45130703	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-E9-A54X-01A-11D-A25Q-09	TCGA-E9-A54X-10A-01D-A25Q-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	91e55d7f-2591-42d9-9044-6415471489a4	79fb420d-e3af-4d04-aad6-ee75efd4ab29	20	45130701	45130703	CTT	-	DEL	ZNF334	ENST00000347606	human	ensembl	69_37n	-1	known	in_frame_del	c.1277_1275	p.R425in_frame_del	0.886:0.994:0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185	42	0	0.00	32	17	34.00	-	-	-
