Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFG3L1P	0	genome.wustl.edu	37	16	90059193	90059193	+	RNA	SNP	G	G	A			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	16	90059193	90059193	G	A	SNP	AFG3L1P	ENST00000388970	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.661	-	-	-	no_errors	AFG3L1P	HGNC	ENSG00000223959	9	0	0.00	7	11	61.11	-	-	-
CCNB3	0	genome.wustl.edu	37	X	50051515	50051515	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	50051515	50051515	G	A	SNP	CCNB3	ENST00000276014	human	ensembl	69_37n	+1	known	missense	c.346	p.E116K	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082	53	0	0.00	36	11	23.40	-	-	-
CRNKL1	0	genome.wustl.edu	37	20	20023016	20023016	+	Missense_Mutation	SNP	T	T	A			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	20	20023016	20023016	T	A	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.1600	p.I534F	1.000	smart_HAT	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	77	0	0.00	34	25	42.37	-	-	-
CXorf57	0	genome.wustl.edu	37	X	105921404	105921404	+	Silent	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	105921404	105921404	C	T	SNP	CXorf57	ENST00000372548	human	ensembl	69_37n	+1	known	silent	c.2484	p.V828	0.207	NULL	superfamily_NA-bd_OB-fold-like	-	no_errors	CXorf57	HGNC	ENSG00000147231	57	0	0.00	35	16	31.37	-	-	-
DCHS2	0	genome.wustl.edu	37	4	155161799	155161799	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	155161799	155161799	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	69_37n	-1	known	missense	c.5884	p.E1962K	0.096	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	51	0	0.00	39	10	20.41	-	-	-
DNMT1	0	genome.wustl.edu	37	19	10259657	10259657	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	19	10259657	10259657	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	69_37n	-1	known	missense	c.2623	p.D875N	0.538	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816	35	0	0.00	8	6	42.86	-	-	-
EIF2B2	0	genome.wustl.edu	37	14	75470300	75470300	+	Nonsense_Mutation	SNP	A	A	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	14	75470300	75470300	A	T	SNP	EIF2B2	ENST00000266126	human	ensembl	69_37n	+1	known	nonsense	c.331	p.K111*	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B2	HGNC	ENSG00000119718	42	0	0.00	40	12	23.08	-	-	-
KCTD16	0	genome.wustl.edu	37	5	143853531	143853531	+	Frame_Shift_Del	DEL	A	A	-			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	5	143853531	143853531	A	-	DEL	KCTD16	ENST00000507359	human	ensembl	69_37n	+1	known	frame_shift_del	c.1141	p.A384fs	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775	26	0	0.00	21	5	19.23	-	-	-
MRGPRX4	0	genome.wustl.edu	37	11	18195501	18195501	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	18195501	18195501	G	T	SNP	MRGPRX4	ENST00000314254	human	ensembl	69_37n	+1	known	missense	c.698	p.G233V	0.002	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817	69	0	0.00	43	15	25.86	-	-	-
MTM1	0	genome.wustl.edu	37	X	149826404	149826404	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	X	149826404	149826404	G	C	SNP	MTM1	ENST00000370396	human	ensembl	69_37n	+1	known	missense	c.1164	p.L388F	0.998	smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	pfam_Myotub-related,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase	-	no_errors	MTM1	HGNC	ENSG00000171100	44	0	0.00	29	9	23.68	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1267311	1267311	+	Silent	SNP	A	A	C			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	1267311	1267311	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	silent	c.9210	p.T3070	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	69	0	0.00	36	6	14.29	-	-	-
MYCBP2	0	genome.wustl.edu	37	13	77656125	77656125	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	13	77656125	77656125	G	C	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	missense	c.11040	p.C3680W	1.000	superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	25	0	0.00	13	7	35.00	-	-	-
NADSYN1	0	genome.wustl.edu	37	11	71212359	71212359	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	71212359	71212359	C	T	SNP	NADSYN1	ENST00000527963	human	ensembl	69_37n	+1	known	nonsense	c.139	p.R47*	0.028	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NADSYN1	HGNC	ENSG00000172890	8	0	0.00	9	11	55.00	-	-	-
NOL8	0	genome.wustl.edu	37	9	95077794	95077794	+	Silent	SNP	T	T	C			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	9	95077794	95077794	T	C	SNP	NOL8	ENST00000442668	human	ensembl	69_37n	-1	known	silent	c.1113	p.R371	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000	53	0	0.00	14	13	48.15	-	-	-
OR2T8	0	genome.wustl.edu	37	1	248084511	248084511	+	Silent	SNP	T	T	C			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	1	248084511	248084511	T	C	SNP	OR2T8	ENST00000319968	human	ensembl	69_37n	+1	known	silent	c.192	p.L64	0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	65	0	0.00	42	11	20.37	-	-	-
OR4S2	0	genome.wustl.edu	37	11	55419087	55419087	+	Silent	SNP	C	C	G			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	55419087	55419087	C	G	SNP	OR4S2	ENST00000312422	human	ensembl	69_37n	+1	known	silent	c.708	p.S236	0.998	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982	32	0	0.00	17	10	37.04	-	-	-
OR5AS1	0	genome.wustl.edu	37	11	55798211	55798211	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	55798211	55798211	C	A	SNP	OR5AS1	ENST00000313555	human	ensembl	69_37n	+1	known	missense	c.317	p.S106Y	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	49	0	0.00	31	7	18.42	-	-	-
OSR2	0	genome.wustl.edu	37	8	99961319	99961319	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	8	99961319	99961319	C	G	SNP	OSR2	ENST00000457907	human	ensembl	69_37n	+1	known	missense	c.502	p.Q168E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	OSR2	HGNC	ENSG00000164920	20	0	0.00	10	7	41.18	-	-	-
PDIK1L	0	genome.wustl.edu	37	1	26448989	26448989	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	1	26448989	26448989	C	G	SNP	PDIK1L	ENST00000374269	human	ensembl	69_37n	+1	known	missense	c.947	p.P316R	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PDIK1L	HGNC	ENSG00000175087	32	0	0.00	28	11	28.21	-	-	-
PDS5A	0	genome.wustl.edu	37	4	39865035	39865035	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	39865035	39865035	A	T	SNP	PDS5A	ENST00000303538	human	ensembl	69_37n	-1	known	missense	c.2687	p.I896K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892	47	0	0.00	42	9	17.65	-	-	-
PLEKHG1	0	genome.wustl.edu	37	6	151151728	151151731	+	Frame_Shift_Del	DEL	AGGA	AGGA	-			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	AGGA	AGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	6	151151728	151151731	AGGA	-	DEL	PLEKHG1	ENST00000358517	human	ensembl	69_37n	+1	known	frame_shift_del	c.1481_1484	p.E495fs	0.999:0.720:0.870:0.852	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278	34	0	0.00	11	6	35.29	-	-	-
PRCD	0	genome.wustl.edu	37	17	74538648	74538648	+	Silent	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	74538648	74538648	C	T	SNP	PRCD	ENST00000586148	human	ensembl	69_37n	+1	known	silent	c.157	p.L53	0.998	NULL	NULL	-	no_errors	PRCD	HGNC	ENSG00000214140	31	0	0.00	28	7	20.00	-	-	-
PRDM9	0	genome.wustl.edu	37	5	23527272	23527272	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	5	23527272	23527272	A	G	SNP	PRDM9	ENST00000296682	human	ensembl	69_37n	+1	known	missense	c.2075	p.Y692C	0.522	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	27	0	0.00	16	9	36.00	-	-	-
PTPRT	0	genome.wustl.edu	37	20	41100907	41100907	+	Silent	SNP	G	G	A			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	20	41100907	41100907	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	69_37n	-1	known	silent	c.1449	p.D483	0.908	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	25	0	0.00	30	10	25.00	-	-	-
RBM47	0	genome.wustl.edu	37	4	40440362	40440362	+	Silent	SNP	G	G	C			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	4	40440362	40440362	G	C	SNP	RBM47	ENST00000295971	human	ensembl	69_37n	-1	known	silent	c.549	p.V183	0.301	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694	11	0	0.00	4	6	60.00	-	-	-
RPTOR	0	genome.wustl.edu	37	17	78831617	78831617	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	78831617	78831617	G	T	SNP	RPTOR	ENST00000306801	human	ensembl	69_37n	+1	known	missense	c.1426	p.V476L	1.000	superfamily_ARM-type_fold,prints_Raptor	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564	31	0	0.00	20	4	16.67	-	-	-
RPUSD2	0	genome.wustl.edu	37	15	40861751	40861751	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	15	40861751	40861751	C	T	SNP	RPUSD2	ENST00000315616	human	ensembl	69_37n	+1	known	missense	c.215	p.P72L	0.000	NULL	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_RluC/D	-	no_errors	RPUSD2	HGNC	ENSG00000166133	10	0	0.00	4	4	50.00	-	-	-
SEPT1	0	genome.wustl.edu	37	16	30393112	30393112	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	16	30393112	30393112	C	T	SNP	SEPT1	ENST00000321367	human	ensembl	69_37n	-1	known	missense	c.289	p.G97S	1.000	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT1	HGNC	ENSG00000180096	42	0	0.00	32	13	28.89	-	-	-
SLC5A7	0	genome.wustl.edu	37	2	108604643	108604643	+	Missense_Mutation	SNP	T	T	G			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	108604643	108604643	T	G	SNP	SLC5A7	ENST00000264047	human	ensembl	69_37n	+1	known	missense	c.32	p.I11S	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665	67	0	0.00	36	14	28.00	-	-	-
SLC6A5	0	genome.wustl.edu	37	11	20676318	20676318	+	Silent	SNP	C	C	G			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	11	20676318	20676318	C	G	SNP	SLC6A5	ENST00000525748	human	ensembl	69_37n	+1	known	silent	c.2298	p.R766	0.542	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970	29	0	0.00	17	6	26.09	-	-	-
TAS2R13	0	genome.wustl.edu	37	12	11061465	11061465	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	12	11061465	11061465	G	C	SNP	TAS2R13	ENST00000390677	human	ensembl	69_37n	-1	known	missense	c.433	p.L145V	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R13	HGNC	ENSG00000212128	48	0	0.00	27	16	37.21	-	-	-
THEM5	0	genome.wustl.edu	37	1	151819737	151819738	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	1	151819737	151819738	GG	-	DEL	THEM5	ENST00000453881	human	ensembl	69_37n	-1	known	frame_shift_del	c.642_641	p.P214fs	0.878:0.888	NULL	pfam_Thioestr_supf	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	THEM5	HGNC	ENSG00000196407	9	0	0.00	6	3	33.33	-	-	-
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	61	0	0.00	21	18	45.00	-	-	-
TSC1	0	genome.wustl.edu	37	9	135772703	135772703	+	Missense_Mutation	SNP	T	T	A			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	9	135772703	135772703	T	A	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	missense	c.2843	p.Y948F	1.000	NULL	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	61	0	0.00	49	22	30.99	-	-	-
TTN	0	genome.wustl.edu	37	2	179478997	179478997	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	179478997	179478997	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.41423	p.R13808H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	49	0	0.00	20	6	23.08	-	-	-
ZFP36L2	0	genome.wustl.edu	37	2	43452474	43452474	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PA-01A-11D-A142-09	TCGA-EW-A1PA-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	56c8aca4-b3bd-4791-b05d-0b2338b6346d	278dc7a3-0378-4bdc-98b7-436bf0a2ab6e	2	43452474	43452474	C	T	SNP	ZFP36L2	ENST00000282388	human	ensembl	69_37n	-1	known	missense	c.469	p.E157K	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Tis11B_N,pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZFP36L2	HGNC	ENSG00000152518	18	0	0.00	12	5	29.41	-	-	-
