Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALMS1	0	genome.wustl.edu	37	2	73651968	73651968	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	73651968	73651968	G	C	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	+1	known	missense	c.1175	p.R392P	0.010	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	17	0	0.00	23	15	39.47	-	-	-
ANO7L1	0	genome.wustl.edu	37	1	16543736	16543736	+	RNA	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	16543736	16543736	G	A	SNP	ANO7L1	ENST00000475369	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANO7L1	HGNC	ENSG00000237276	9	0	0.00	10	4	28.57	-	-	-
ATG9B	0	genome.wustl.edu	37	7	150721003	150721003	+	RNA	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	7	150721003	150721003	C	T	SNP	ATG9B	ENST00000377974	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ATG9B	HGNC	ENSG00000181652	49	0	0.00	56	41	42.27	-	-	-
C17orf28	0	genome.wustl.edu	37	17	72948429	72948429	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	72948429	72948429	C	T	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	silent	c.2079	p.P693	0.783	NULL	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	30	0	0.00	85	25	22.73	-	-	-
C17orf97	0	genome.wustl.edu	37	17	263643	263643	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	263643	263643	C	A	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	+1	known	missense	c.1009	p.P337T	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	19	0	0.00	24	7	22.58	-	-	-
C17orf97	0	genome.wustl.edu	37	17	263645	263645	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	263645	263645	C	T	SNP	C17orf97	ENST00000360127	human	ensembl	69_37n	+1	known	silent	c.1011	p.P337	0.000	NULL	NULL	-	no_errors	C17orf97	HGNC	ENSG00000187624	18	0	0.00	23	7	23.33	-	-	-
C9orf174	0	genome.wustl.edu	37	9	100124574	100124574	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	9	100124574	100124574	G	C	SNP	C9orf174	ENST00000375202	human	ensembl	69_37n	+1	known	missense	c.3885	p.E1295D	0.002	NULL	NULL	-	no_errors	C9orf174	HGNC	ENSG00000197816	35	0	0.00	17	27	61.36	-	-	-
CFLAR	0	genome.wustl.edu	37	2	202005121	202005121	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	202005121	202005121	G	T	SNP	CFLAR	ENST00000309955	human	ensembl	69_37n	+1	known	missense	c.565	p.A189S	0.023	NULL	pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_ICE_p20	-	no_errors	CFLAR	HGNC	ENSG00000003402	36	0	0.00	28	4	12.50	-	-	-
COL19A1	0	genome.wustl.edu	37	6	70642694	70642694	+	Missense_Mutation	SNP	A	A	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	6	70642694	70642694	A	C	SNP	COL19A1	ENST00000322773	human	ensembl	69_37n	+1	known	missense	c.686	p.K229T	0.324	superfamily_ConA-like_lec_gl,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl,smart_Laminin_G	-	no_errors	COL19A1	HGNC	ENSG00000082293	27	0	0.00	51	27	34.62	-	-	-
COL4A3	0	genome.wustl.edu	37	2	228111412	228111412	+	Silent	SNP	G	G	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	228111412	228111412	G	T	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	+1	known	silent	c.399	p.G133	0.866	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	43	0	0.00	35	18	33.96	-	-	-
DBC1	0	genome.wustl.edu	37	9	121929962	121929962	+	Silent	SNP	G	G	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	9	121929962	121929962	G	C	SNP	DBC1	ENST00000265922	human	ensembl	69_37n	-1	known	silent	c.1686	p.V562	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	DBC1	HGNC	ENSG00000078725	31	0	0.00	8	17	68.00	-	-	-
DDR2	0	genome.wustl.edu	37	1	162722987	162722987	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	162722987	162722987	G	A	SNP	DDR2	ENST00000367921	human	ensembl	69_37n	+1	known	missense	c.185	p.R62K	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	15	0	0.00	50	15	23.08	-	-	-
DDX1	0	genome.wustl.edu	37	2	15743373	15743373	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	15743373	15743373	C	T	SNP	DDX1	ENST00000233084	human	ensembl	69_37n	+1	known	missense	c.449	p.S150F	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_ConA-like_lec_gl,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785	48	0	0.00	47	25	34.72	-	-	-
DYNC1I1	0	genome.wustl.edu	37	7	95499217	95499217	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	7	95499217	95499217	G	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	69_37n	+1	known	missense	c.448	p.V150M	0.993	pfam_Dynein_IC_1/2	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	35	0	0.00	47	23	32.86	-	-	-
EBF2	0	genome.wustl.edu	37	8	25747294	25747294	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	8	25747294	25747294	C	G	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.725	p.R242T	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	28	0	0.00	33	11	25.00	-	-	-
EFNA5	0	genome.wustl.edu	37	5	106722968	106722968	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	5	106722968	106722968	T	C	SNP	EFNA5	ENST00000333274	human	ensembl	69_37n	-1	known	missense	c.533	p.N178S	1.000	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA5	HGNC	ENSG00000184349	17	0	0.00	33	10	23.26	-	-	-
EP300	0	genome.wustl.edu	37	22	41527549	41527549	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	22	41527549	41527549	G	A	SNP	EP300	ENST00000263253	human	ensembl	69_37n	+1	known	missense	c.1440	p.M480I	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	19	0	0.00	20	19	48.72	-	-	-
FAM47B	0	genome.wustl.edu	37	X	34961262	34961262	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	X	34961262	34961262	C	T	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	+1	known	missense	c.314	p.S105F	0.096	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	71	0	0.00	78	60	43.48	-	-	-
FRG2B	0	genome.wustl.edu	37	10	135438753	135438753	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	10	135438753	135438753	G	A	SNP	FRG2B	ENST00000443774	human	ensembl	69_37n	-1	known	silent	c.690	p.T230	0.707	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899	9	0	0.00	21	12	36.36	-	-	-
HERC2P4	0	genome.wustl.edu	37	16	32192677	32192677	+	RNA	SNP	T	T	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	16	32192677	32192677	T	C	SNP	HERC2P4	ENST00000568097	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267	102	1	0.97	167	80	32.39	-	-	-
HEXDC	0	genome.wustl.edu	37	17	80393721	80393721	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	80393721	80393721	C	T	SNP	HEXDC	ENST00000337014	human	ensembl	69_37n	+1	known	nonsense	c.604	p.R202*	0.805	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	-	no_errors	HEXDC	HGNC	ENSG00000169660	22	0	0.00	61	18	22.78	-	-	-
HLA-DRB1	0	genome.wustl.edu	37	6	32548026	32548026	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	6	32548026	32548026	G	C	SNP	HLA-DRB1	ENST00000360004	human	ensembl	69_37n	-1	known	missense	c.785	p.T262R	1.000	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	11	0	0.00	33	18	35.29	-	-	-
IGF2BP1	0	genome.wustl.edu	37	17	47074903	47074903	+	RNA	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	47074903	47074903	G	A	SNP	IGF2BP1	ENST00000510023	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.078	-	-	-	no_errors	IGF2BP1	HGNC	ENSG00000159217	53	0	0.00	76	69	47.59	-	-	-
KANK2	0	genome.wustl.edu	37	19	11287434	11287434	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	11287434	11287434	G	A	SNP	KANK2	ENST00000432929	human	ensembl	69_37n	-1	known	missense	c.1604	p.T535I	0.988	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256	45	0	0.00	63	41	39.42	-	-	-
KCNC1	0	genome.wustl.edu	37	11	17794066	17794066	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	11	17794066	17794066	C	T	SNP	KCNC1	ENST00000265969	human	ensembl	69_37n	+1	known	silent	c.1425	p.V475	1.000	prints_K_chnl_volt-dep_Kv3.1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv3.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	-	no_errors	KCNC1	HGNC	ENSG00000129159	19	0	0.00	51	26	33.77	-	-	-
KIRREL3	0	genome.wustl.edu	37	11	126870458	126870458	+	RNA	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	11	126870458	126870458	C	T	SNP	KIRREL3	ENST00000533026	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	KIRREL3	HGNC	ENSG00000149571	16	0	0.00	7	21	75.00	-	-	-
KLHL29	0	genome.wustl.edu	37	2	23916391	23916391	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	23916391	23916391	G	A	SNP	KLHL29	ENST00000486442	human	ensembl	69_37n	+1	known	missense	c.1535	p.R512H	0.946	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_BACK,pfam_Kelch_2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL29	HGNC	ENSG00000119771	16	0	0.00	29	6	17.14	-	-	-
LANCL3	0	genome.wustl.edu	37	X	37431625	37431625	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	X	37431625	37431625	G	A	SNP	LANCL3	ENST00000378619	human	ensembl	69_37n	+1	known	missense	c.502	p.D168N	1.000	pfam_LANC-like,prints_LANC-like	pfam_LANC-like,superfamily_6-hairpin_glycosidase-like,prints_LANC-like,prints_LanC-like_prot_euk	-	no_errors	LANCL3	HGNC	ENSG00000147036	45	0	0.00	49	27	35.53	-	-	-
LINC00200	0	genome.wustl.edu	37	10	1205736	1205736	+	RNA	SNP	A	A	G			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	10	1205736	1205736	A	G	SNP	LINC00200	ENST00000425630	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.155	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	23	0	0.00	63	13	17.11	-	-	-
MCM3AP	0	genome.wustl.edu	37	21	47695144	47695144	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	21	47695144	47695144	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.1954	p.R652C	0.973	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	45	0	0.00	53	42	44.21	-	-	-
MRPL23	0	genome.wustl.edu	37	11	1983601	1983601	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	11	1983601	1983601	G	A	SNP	MRPL23	ENST00000381514	human	ensembl	69_37n	+1	putative	missense	c.430	p.V144M	0.000	NULL	pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom	-	no_errors	MRPL23	HGNC	ENSG00000214026	43	0	0.00	75	61	44.85	-	-	-
NOTCH2	0	genome.wustl.edu	37	1	120480488	120480488	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	120480488	120480488	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.3329	p.S1110F	0.001	pirsf_Notch,smart_EGF-like,smart_EGF-like_Ca-bd	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	24	0	0.00	42	6	12.50	-	-	-
NPNT	0	genome.wustl.edu	37	4	106861703	106861703	+	Frame_Shift_Del	DEL	T	T	-			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	4	106861703	106861703	T	-	DEL	NPNT	ENST00000379987	human	ensembl	69_37n	+1	known	frame_shift_del	c.673	p.C225fs	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_MAM_dom,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl,superfamily_TIL_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_MAM_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	NPNT	HGNC	ENSG00000168743	40	0	0.00	39	27	40.30	-	-	-
OGFR	0	genome.wustl.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	20	61444633	61444633	G	A	SNP	OGFR	ENST00000290291	human	ensembl	69_37n	+1	known	missense	c.1666	p.E556K	0.040	pfam_OGF_rcpt_rpt	pfam_OGF_rcpt,pfam_OGF_rcpt_rpt	-	no_errors	OGFR	HGNC	ENSG00000060491	16	0	0.00	43	14	24.56	-	-	-
OR6F1	0	genome.wustl.edu	37	1	247875683	247875683	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	247875683	247875683	G	A	SNP	OR6F1	ENST00000302084	human	ensembl	69_37n	-1	known	silent	c.375	p.A125	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214	17	0	0.00	47	12	20.34	-	-	-
OTOG	0	genome.wustl.edu	37	11	17580087	17580087	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	11	17580087	17580087	C	T	SNP	OTOG	ENST00000399391	human	ensembl	69_37n	+1	known	silent	c.1035	p.G345	0.928	smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_AbfB,pfam_TIL_dom,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom	-	no_errors	OTOG	HGNC	ENSG00000188162	26	0	0.00	37	33	47.14	-	-	-
PDE6C	0	genome.wustl.edu	37	10	95386562	95386562	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	10	95386562	95386562	G	A	SNP	PDE6C	ENST00000371447	human	ensembl	69_37n	+1	known	silent	c.1005	p.P335	0.953	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6C	HGNC	ENSG00000095464	61	0	0.00	71	23	24.47	-	-	-
PIK3R4	0	genome.wustl.edu	37	3	130454763	130454763	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	3	130454763	130454763	A	G	SNP	PIK3R4	ENST00000356763	human	ensembl	69_37n	-1	known	missense	c.817	p.F273L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_cat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	36	0	0.00	36	36	50.00	-	-	-
PKHD1L1	0	genome.wustl.edu	37	8	110439324	110439324	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	8	110439324	110439324	G	C	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	+1	known	missense	c.2939	p.C980S	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	65	0	0.00	101	29	22.31	-	-	-
PSD	0	genome.wustl.edu	37	10	104172164	104172164	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	10	104172164	104172164	G	A	SNP	PSD	ENST00000020673	human	ensembl	69_37n	-1	known	silent	c.1722	p.A574	0.017	pfam_Sec7,superfamily_Sec7,smart_Sec7,pfscan_Sec7	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915	52	0	0.00	65	38	36.89	-	-	-
PTPRN2	0	genome.wustl.edu	37	7	157926524	157926524	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	7	157926524	157926524	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	69_37n	-1	known	silent	c.1470	p.A490	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093	43	0	0.00	64	38	37.25	-	-	-
RANBP3	0	genome.wustl.edu	37	19	5925680	5925680	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	5925680	5925680	G	A	SNP	RANBP3	ENST00000340578	human	ensembl	69_37n	-1	known	silent	c.882	p.T294	0.003	NULL	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823	58	0	0.00	72	57	44.19	-	-	-
RASGRP4	0	genome.wustl.edu	37	19	38916711	38916711	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	38916711	38916711	C	T	SNP	RASGRP4	ENST00000587738	human	ensembl	69_37n	-1	known	silent	c.21	p.K7	1.000	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP4	HGNC	ENSG00000171777	23	0	0.00	60	32	34.78	-	-	-
RBM45	0	genome.wustl.edu	37	2	178977293	178977293	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	178977293	178977293	C	G	SNP	RBM45	ENST00000286070	human	ensembl	69_37n	+1	known	missense	c.20	p.S7C	0.692	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636	29	0	0.00	20	12	37.50	-	-	-
SCNM1	0	genome.wustl.edu	37	1	151139102	151139102	+	RNA	SNP	G	G	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	151139102	151139102	G	T	SNP	SCNM1	ENST00000471039	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.064	-	-	-	no_errors	SCNM1	HGNC	ENSG00000163156	13	0	0.00	31	19	38.00	-	-	-
SDK2	0	genome.wustl.edu	37	17	71431705	71431705	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	71431705	71431705	C	T	SNP	SDK2	ENST00000392650	human	ensembl	69_37n	-1	known	missense	c.1079	p.R360H	0.616	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	SDK2	HGNC	ENSG00000069188	40	0	0.00	88	18	16.98	-	-	-
SIGLEC5	0	genome.wustl.edu	37	19	52130755	52130755	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	52130755	52130755	G	A	SNP	SIGLEC5	ENST00000222107	human	ensembl	69_37n	-1	known	silent	c.1242	p.N414	0.002	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	SIGLEC5	HGNC	ENSG00000105501	68	0	0.00	106	27	20.30	-	-	-
SLC19A1	0	genome.wustl.edu	37	21	46918318	46918318	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	21	46918318	46918318	G	A	SNP	SLC19A1	ENST00000567670	human	ensembl	69_37n	-1	putative	missense	c.1502	p.A501V	0.291	superfamily_Glu_synth_asu_C	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,superfamily_Glu_synth_asu_C,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	8	0	0.00	39	41	51.25	-	-	-
SLIT2	0	genome.wustl.edu	37	4	20598129	20598129	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	4	20598129	20598129	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	69_37n	+1	known	missense	c.3412	p.V1138I	0.999	pfam_EGF-like_dom,smart_Fol_N,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	31	0	0.00	36	43	54.43	-	-	-
SLITRK3	0	genome.wustl.edu	37	3	164906171	164906171	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	3	164906171	164906171	C	T	SNP	SLITRK3	ENST00000241274	human	ensembl	69_37n	-1	known	silent	c.2448	p.K816	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	41	0	0.00	44	15	25.42	-	-	-
SNORA11	0	genome.wustl.edu	37	X	54840889	54840889	+	RNA	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	X	54840889	54840889	C	T	SNP	SNORA11	ENST00000408789	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORA11	HGNC	ENSG00000221716	107	0	0.00	136	106	43.62	-	-	-
SRCAP	0	genome.wustl.edu	37	16	30744741	30744741	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	16	30744741	30744741	G	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	+1	known	missense	c.6268	p.D2090Y	1.000	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	16	0	0.00	43	15	25.86	-	-	-
SRD5A1	0	genome.wustl.edu	37	5	6663007	6663007	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	5	6663007	6663007	G	A	SNP	SRD5A1	ENST00000274192	human	ensembl	69_37n	+1	known	nonsense	c.641	p.W214*	1.000	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545	54	0	0.00	117	23	16.43	-	-	-
SYNPO2	0	genome.wustl.edu	37	4	119952660	119952660	+	Missense_Mutation	SNP	T	T	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	4	119952660	119952660	T	A	SNP	SYNPO2	ENST00000307142	human	ensembl	69_37n	+1	known	missense	c.2730	p.S910R	0.405	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403	18	0	0.00	26	10	27.78	-	-	-
TBC1D10B	0	genome.wustl.edu	37	16	30376911	30376911	+	Missense_Mutation	SNP	T	T	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	16	30376911	30376911	T	A	SNP	TBC1D10B	ENST00000409939	human	ensembl	69_37n	-1	known	missense	c.961	p.S321C	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10B	HGNC	ENSG00000169221	44	0	0.00	78	19	19.39	-	-	-
TBC1D8	0	genome.wustl.edu	37	2	101667087	101667087	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	101667087	101667087	C	T	SNP	TBC1D8	ENST00000409318	human	ensembl	69_37n	-1	known	silent	c.648	p.P216	0.924	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8	HGNC	ENSG00000204634	20	0	0.00	37	14	27.45	-	-	-
TNC	0	genome.wustl.edu	37	9	117848957	117848957	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	9	117848957	117848957	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.1053	p.H351	0.000	pfam_EGF_extracell,smart_EGF-like	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	26	0	0.00	15	31	67.39	-	-	-
TNC	0	genome.wustl.edu	37	9	117849163	117849163	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	9	117849163	117849163	G	A	SNP	TNC	ENST00000350763	human	ensembl	69_37n	-1	known	silent	c.847	p.L283	0.741	smart_EGF-like,pfscan_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C,superfamily_Fibronectin_type3,smart_EGF-like,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	41	0	0.00	15	27	64.29	-	-	-
TOP3B	0	genome.wustl.edu	37	22	22311882	22311882	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	22	22311882	22311882	G	A	SNP	TOP3B	ENST00000357179	human	ensembl	69_37n	-1	known	silent	c.2193	p.S731	0.068	NULL	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038	12	0	0.00	13	10	43.48	-	-	-
TTC34	0	genome.wustl.edu	37	1	2704167	2704167	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	1	2704167	2704167	C	T	SNP	TTC34	ENST00000401095	human	ensembl	69_37n	-1	known	missense	c.194	p.R65H	1.000	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC34	HGNC	ENSG00000215912	27	0	0.00	14	30	68.18	-	-	-
TTN	0	genome.wustl.edu	37	2	179594184	179594184	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	179594184	179594184	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.14967	p.L4989	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	23	0	0.00	17	10	37.04	-	-	-
TTN	0	genome.wustl.edu	37	2	179595299	179595299	+	Silent	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	179595299	179595299	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.14229	p.G4743	0.557	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	47	0	0.00	56	23	29.11	-	-	-
TTN	0	genome.wustl.edu	37	2	179595307	179595307	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	2	179595307	179595307	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.14221	p.D4741N	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	41	0	0.00	51	23	31.08	-	-	-
UGGT2	0	genome.wustl.edu	37	13	96506701	96506701	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	13	96506701	96506701	C	T	SNP	UGGT2	ENST00000376747	human	ensembl	69_37n	-1	known	missense	c.4037	p.R1346Q	1.000	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	36	0	0.00	41	10	19.61	-	-	-
USP32P1	0	genome.wustl.edu	37	17	16707369	16707369	+	RNA	SNP	C	C	T			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	17	16707369	16707369	C	T	SNP	USP32P1	ENST00000341745	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.750	-	-	-	no_errors	USP32P1	HGNC	ENSG00000188933	30	0	0.00	28	29	50.88	-	-	-
UXT	0	genome.wustl.edu	37	X	47518369	47518369	+	RNA	SNP	C	C	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	X	47518369	47518369	C	A	SNP	UXT	ENST00000485641	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	UXT	HGNC	ENSG00000126756	67	0	0.00	110	30	21.43	-	-	-
VPS52	0	genome.wustl.edu	37	6	33236395	33236395	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	6	33236395	33236395	T	C	SNP	VPS52	ENST00000445902	human	ensembl	69_37n	-1	known	missense	c.580	p.R194G	0.953	pfam_Vps52,pfam_Exocyst_Exoc1	pfam_Vps52,pfam_Exocyst_Exoc1	-	no_errors	VPS52	HGNC	ENSG00000223501	18	0	0.00	20	34	62.96	-	-	-
ZNF44	0	genome.wustl.edu	37	19	12383720	12383720	+	Silent	SNP	T	T	C			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	12383720	12383720	T	C	SNP	ZNF44	ENST00000393337	human	ensembl	69_37n	-1	known	silent	c.1494	p.K498	0.259	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857	29	0	0.00	58	23	28.40	-	-	-
ZNF521	0	genome.wustl.edu	37	18	22806796	22806796	+	Silent	SNP	G	G	A			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	18	22806796	22806796	G	A	SNP	ZNF521	ENST00000361524	human	ensembl	69_37n	-1	known	silent	c.1086	p.N362	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	34	0	0.00	26	21	44.68	-	-	-
ZNF91	0	genome.wustl.edu	37	19	23543146	23543146	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	23543146	23543146	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.2635	p.E879Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	13	0	0.00	38	26	40.62	-	-	-
ZNF91	0	genome.wustl.edu	37	19	23543480	23543480	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	23543480	23543480	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.2301	p.E767D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	36	0	0.00	51	31	37.80	-	-	-
ZNF91	0	genome.wustl.edu	37	19	23543820	23543820	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A423-01A-11D-A243-09	TCGA-EW-A423-10A-01D-A243-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0077cf20-d598-4e04-863c-534e3386580e	5c24d17e-b10e-4b8e-9250-f0ed71fd4e3b	19	23543820	23543820	C	G	SNP	ZNF91	ENST00000300619	human	ensembl	69_37n	-1	known	missense	c.1961	p.G654A	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232	14	0	0.00	39	32	45.07	-	-	-
