Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABI3BP	0	genome.wustl.edu	37	3	100489698	100489698	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	3	100489698	100489698	C	T	SNP	ABI3BP	ENST00000284322	human	ensembl	69_37n	-1	known	missense	c.2497	p.A833T	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	289	0	0.00	121	32	20.92	-	-	-
ACACB	0	genome.wustl.edu	37	12	109694027	109694027	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	12	109694027	109694027	G	T	SNP	ACACB	ENST00000538526	human	ensembl	69_37n	+1	known	missense	c.2248	p.D750Y	0.999	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfam_AcCoA_COase_cen,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ACACB	HGNC	ENSG00000076555	31	0	0.00	21	4	16.00	-	-	-
AKAP6	0	genome.wustl.edu	37	14	33015979	33015979	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	14	33015979	33015979	C	T	SNP	AKAP6	ENST00000280979	human	ensembl	69_37n	+1	known	missense	c.2120	p.S707L	0.997	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320	52	0	0.00	27	16	37.21	-	-	-
ARHGAP12	0	genome.wustl.edu	37	10	32128240	32128240	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	10	32128240	32128240	C	A	SNP	ARHGAP12	ENST00000344936	human	ensembl	69_37n	-1	known	missense	c.1379	p.S460I	0.004	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_Rsp5_WWP,smart_SH3_domain,smart_WW_Rsp5_WWP,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_Rsp5_WWP,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322	88	0	0.00	47	25	34.72	-	-	-
C20orf196	0	genome.wustl.edu	37	20	5753620	5753620	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	20	5753620	5753620	G	A	SNP	C20orf196	ENST00000303142	human	ensembl	69_37n	+1	known	missense	c.109	p.E37K	0.000	NULL	NULL	-	no_errors	C20orf196	HGNC	ENSG00000171984	59	0	0.00	44	20	31.25	-	-	-
CALN1	0	genome.wustl.edu	37	7	71275372	71275372	+	Nonsense_Mutation	SNP	C	C	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	7	71275372	71275372	C	A	SNP	CALN1	ENST00000395275	human	ensembl	69_37n	-1	known	nonsense	c.607	p.E203*	1.000	NULL	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	CALN1	HGNC	ENSG00000183166	128	0	0.00	81	24	22.86	-	-	-
CCDC18	0	genome.wustl.edu	37	1	93730309	93730309	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	93730309	93730309	C	G	SNP	CCDC18	ENST00000557479	human	ensembl	69_37n	+1	known	missense	c.4090	p.Q1364E	1.000	superfamily_tRNA-bd_arm	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	43	0	0.00	31	12	27.91	-	-	-
CDC16	0	genome.wustl.edu	37	13	115016085	115016085	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	13	115016085	115016085	G	T	SNP	CDC16	ENST00000356221	human	ensembl	69_37n	+1	known	missense	c.1033	p.A345S	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177	82	0	0.00	36	4	10.00	-	-	-
ELF4	0	genome.wustl.edu	37	X	129201241	129201241	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	129201241	129201241	G	A	SNP	ELF4	ENST00000308167	human	ensembl	69_37n	-1	known	missense	c.1447	p.L483F	1.000	NULL	pfam_TF_Elf_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ELF4	HGNC	ENSG00000102034	35	0	0.00	16	10	38.46	-	-	-
EP300	0	genome.wustl.edu	37	22	41521913	41521913	+	Nonsense_Mutation	SNP	C	C	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	22	41521913	41521913	C	T	SNP	EP300	ENST00000263253	human	ensembl	69_37n	+1	known	nonsense	c.775	p.Q259*	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393	70	0	0.00	24	18	42.86	-	-	-
FOLH1	0	genome.wustl.edu	37	11	49168403	49168403	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	11	49168403	49168403	C	T	SNP	FOLH1	ENST00000256999	human	ensembl	69_37n	-1	known	missense	c.2158	p.D720N	0.156	pfam_TFR-like_dimer_dom,superfamily_TFR-like_dimer_dom	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	154	0	0.00	69	18	20.69	-	-	-
GPR112	0	genome.wustl.edu	37	X	135427511	135427511	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	135427511	135427511	C	T	SNP	GPR112	ENST00000370652	human	ensembl	69_37n	+1	known	missense	c.1646	p.S549L	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	33	0	0.00	19	8	29.63	-	-	-
HCN4	0	genome.wustl.edu	37	15	73616015	73616015	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	15	73616015	73616015	G	A	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.2419	p.R807C	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	40	0	0.00	28	8	22.22	-	-	-
IGSF1	0	genome.wustl.edu	37	X	130409212	130409212	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	130409212	130409212	G	T	SNP	IGSF1	ENST00000370903	human	ensembl	69_37n	-1	known	missense	c.3248	p.A1083D	0.900	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	IGSF1	HGNC	ENSG00000147255	44	0	0.00	34	4	10.53	-	-	-
IL31RA	0	genome.wustl.edu	37	5	55202014	55202014	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	55202014	55202014	G	T	SNP	IL31RA	ENST00000447346	human	ensembl	69_37n	+1	known	missense	c.1150	p.V384L	0.612	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509	114	0	0.00	75	23	23.47	-	-	-
KCNT2	0	genome.wustl.edu	37	1	196367792	196367792	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	196367792	196367792	T	G	SNP	KCNT2	ENST00000294725	human	ensembl	69_37n	-1	known	missense	c.1195	p.T399P	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2	-	no_errors	KCNT2	HGNC	ENSG00000162687	51	0	0.00	19	12	38.71	-	-	-
LCE1A	0	genome.wustl.edu	37	1	152800020	152800020	+	Silent	SNP	C	C	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	152800020	152800020	C	T	SNP	LCE1A	ENST00000335123	human	ensembl	69_37n	+1	known	silent	c.72	p.C24	0.789	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844	139	0	0.00	41	15	26.79	-	-	-
LCP2	0	genome.wustl.edu	37	5	169714981	169714981	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	169714981	169714981	G	A	SNP	LCP2	ENST00000046794	human	ensembl	69_37n	-1	known	missense	c.181	p.R61W	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462	98	0	0.00	45	13	22.41	-	-	-
MORF4L2	0	genome.wustl.edu	37	X	102931276	102931276	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	102931276	102931276	T	G	SNP	MORF4L2	ENST00000360458	human	ensembl	69_37n	-1	known	missense	c.680	p.H227P	1.000	pfam_MRG	pfam_MRG,superfamily_Chromodomain-like	-	no_errors	MORF4L2	HGNC	ENSG00000123562	62	0	0.00	27	11	28.95	-	-	-
NCOR2	0	genome.wustl.edu	37	12	124886970	124886970	+	Frame_Shift_Del	DEL	G	G	-			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	12	124886970	124886970	G	-	DEL	NCOR2	ENST00000356219	human	ensembl	69_37n	-1	known	frame_shift_del	c.1620	p.N540fs	0.053	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	118	0	0.00	86	20	18.35	-	-	-
NR5A1	0	genome.wustl.edu	37	9	127262398	127262398	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	9	127262398	127262398	G	A	SNP	NR5A1	ENST00000373588	human	ensembl	69_37n	-1	known	missense	c.841	p.R281C	0.997	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,prints_Str_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pirsf_Steroidogenic_factor_1,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR5A1	HGNC	ENSG00000136931	26	0	0.00	13	5	27.78	-	-	-
NRG3	0	genome.wustl.edu	37	10	83635435	83635435	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	10	83635435	83635435	C	A	SNP	NRG3	ENST00000404547	human	ensembl	69_37n	+1	known	missense	c.339	p.F113L	1.000	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737	47	0	0.00	33	10	23.26	-	-	-
NXF4	0	genome.wustl.edu	37	X	101818873	101818873	+	RNA	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	101818873	101818873	G	A	SNP	NXF4	ENST00000360035	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970	110	0	0.00	61	13	17.57	-	-	-
ODZ2	0	genome.wustl.edu	37	5	167674807	167674807	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	167674807	167674807	G	T	SNP	ODZ2	ENST00000518659	human	ensembl	69_37n	+1	known	missense	c.6863	p.R2288I	0.999	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl,superfamily_Cytokine_IL1-like,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	ODZ2	HGNC	ENSG00000145934	28	0	0.00	23	7	23.33	-	-	-
PIEZO1	0	genome.wustl.edu	37	16	88793188	88793188	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	16	88793188	88793188	G	T	SNP	PIEZO1	ENST00000301015	human	ensembl	69_37n	-1	novel	missense	c.3634	p.L1212I	1.000	NULL	pfam_DUF3595	-	no_errors	PIEZO1	HGNC	ENSG00000103335	28	0	0.00	21	4	16.00	-	-	-
PTPRM	0	genome.wustl.edu	37	18	8296407	8296407	+	Missense_Mutation	SNP	G	G	C			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	18	8296407	8296407	G	C	SNP	PTPRM	ENST00000400060	human	ensembl	69_37n	+1	known	missense	c.2799	p.K933N	1.000	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	88	0	0.00	29	22	43.14	-	-	-
RBMXL3	0	genome.wustl.edu	37	X	114426304	114426304	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	114426304	114426304	C	A	SNP	RBMXL3	ENST00000424776	human	ensembl	69_37n	+1	known	missense	c.2300	p.S767Y	0.070	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	65	0	0.00	32	6	15.38	-	-	-
RGAG1	0	genome.wustl.edu	37	X	109694771	109694771	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	109694771	109694771	C	T	SNP	RGAG1	ENST00000465301	human	ensembl	69_37n	+1	known	missense	c.926	p.S309L	0.692	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978	89	0	0.00	44	21	32.31	-	-	-
RPUSD4	0	genome.wustl.edu	37	11	126075441	126075441	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	11	126075441	126075441	C	G	SNP	RPUSD4	ENST00000298317	human	ensembl	69_37n	-1	known	missense	c.718	p.A240P	0.982	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526	74	0	0.00	29	24	45.28	-	-	-
SAFB2	0	genome.wustl.edu	37	19	5595489	5595489	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	19	5595489	5595489	C	A	SNP	SAFB2	ENST00000252542	human	ensembl	69_37n	-1	known	missense	c.1802	p.R601L	1.000	NULL	pfam_RRM_dom,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_RRM_dom,pfscan_SAP_DNA-bd,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	100	0	0.00	73	19	20.65	-	-	-
SETX	0	genome.wustl.edu	37	9	135205171	135205171	+	Missense_Mutation	SNP	A	A	C			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	9	135205171	135205171	A	C	SNP	SETX	ENST00000372169	human	ensembl	69_37n	-1	known	missense	c.1814	p.F605C	0.001	NULL	NULL	-	no_errors	SETX	HGNC	ENSG00000107290	46	0	0.00	29	8	21.62	-	-	-
SIPA1L3	0	genome.wustl.edu	37	19	38694842	38694842	+	Silent	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	19	38694842	38694842	G	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	+1	known	silent	c.5196	p.L1732	0.958	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	30	0	0.00	18	4	18.18	-	-	-
ST8SIA4	0	genome.wustl.edu	37	5	100238563	100238563	+	Nonsense_Mutation	SNP	C	C	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	100238563	100238563	C	A	SNP	ST8SIA4	ENST00000231461	human	ensembl	69_37n	-1	known	nonsense	c.97	p.E33*	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA4	HGNC	ENSG00000113532	93	0	0.00	54	23	29.87	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152804248	152804248	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	6	152804248	152804248	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	missense	c.1322	p.T441M	0.995	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	151	0	0.00	79	36	31.30	-	-	-
THOC2	0	genome.wustl.edu	37	X	122830637	122830637	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	X	122830637	122830637	G	T	SNP	THOC2	ENST00000245838	human	ensembl	69_37n	-1	known	nonsense	c.401	p.S134*	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	146	0	0.00	94	31	24.80	-	-	-
TM2D1	0	genome.wustl.edu	37	1	62166636	62166636	+	Missense_Mutation	SNP	C	C	G			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	1	62166636	62166636	C	G	SNP	TM2D1	ENST00000371180	human	ensembl	69_37n	-1	known	missense	c.595	p.D199H	1.000	pfam_TM2	pfam_TM2	-	no_errors	TM2D1	HGNC	ENSG00000162604	60	0	0.00	27	14	34.15	-	-	-
TP53	0	genome.wustl.edu	37	17	7577095	7577095	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	17	7577095	7577095	G	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.843	p.D281E	0.993	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	88	0	0.00	33	12	26.67	-	-	-
TPMT	0	genome.wustl.edu	37	6	18139900	18139900	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	6	18139900	18139900	G	A	SNP	TPMT	ENST00000309983	human	ensembl	69_37n	-1	known	missense	c.415	p.P139S	1.000	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	pfam_TPMT,pirsf_Thiopurine_S-MeTrfase	-	no_errors	TPMT	HGNC	ENSG00000137364	60	0	0.00	19	11	36.67	-	-	-
TSHZ1	0	genome.wustl.edu	37	18	72999678	72999678	+	Silent	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	18	72999678	72999678	G	A	SNP	TSHZ1	ENST00000580243	human	ensembl	69_37n	+1	known	silent	c.2316	p.A772	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ1	HGNC	ENSG00000179981	25	0	0.00	8	7	46.67	-	-	-
TTC37	0	genome.wustl.edu	37	5	94877078	94877078	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	5	94877078	94877078	G	T	SNP	TTC37	ENST00000358746	human	ensembl	69_37n	-1	known	missense	c.333	p.D111E	1.000	NULL	pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	46	0	0.00	19	11	36.67	-	-	-
TTLL3	0	genome.wustl.edu	37	3	9874880	9874880	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	3	9874880	9874880	G	A	SNP	TTLL3	ENST00000426895	human	ensembl	69_37n	+1	known	missense	c.2076	p.M692I	0.000	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL3	HGNC	ENSG00000214021	28	0	0.00	17	5	22.73	-	-	-
TXNDC16	0	genome.wustl.edu	37	14	52899269	52899269	+	Frame_Shift_Del	DEL	G	G	-			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	14	52899269	52899269	G	-	DEL	TXNDC16	ENST00000281741	human	ensembl	69_37n	-1	known	frame_shift_del	c.2231	p.P744fs	1.000	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	33	0	0.00	17	6	26.09	-	-	-
ULK4	0	genome.wustl.edu	37	3	41942241	41942241	+	Silent	SNP	G	G	A			TCGA-GM-A2DL-01A-11D-A18P-09	TCGA-GM-A2DL-10C-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	05618052-7f63-45dc-9a47-df92fce1bad9	9f1ebbdb-32b6-4e83-80e9-d87433f83958	3	41942241	41942241	G	A	SNP	ULK4	ENST00000301831	human	ensembl	69_37n	-1	known	silent	c.1263	p.V421	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	67	0	0.00	37	22	37.29	-	-	-
