Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BAP1	0	genome.wustl.edu	37	3	52440862	52440862	+	Missense_Mutation	SNP	G	G	C			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	3	52440862	52440862	G	C	SNP	BAP1	ENST00000460680	human	ensembl	69_37n	-1	known	missense	c.642	p.I214M	0.109	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930	58	0	0.00	38	12	24.00	-	-	-
C1GALT1C1	0	genome.wustl.edu	37	X	119760370	119760370	+	Missense_Mutation	SNP	A	A	T			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	X	119760370	119760370	A	T	SNP	C1GALT1C1	ENST00000304661	human	ensembl	69_37n	-1	known	missense	c.652	p.S218T	0.953	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155	69	0	0.00	59	7	10.61	-	-	-
DNTT	0	genome.wustl.edu	37	10	98092260	98092260	+	Missense_Mutation	SNP	G	G	T			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	10	98092260	98092260	G	T	SNP	DNTT	ENST00000371174	human	ensembl	69_37n	+1	known	missense	c.1266	p.Q422H	0.975	smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA-dir_DNA_pol_X_beta-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_DNA_nucleotidylexotransferase,pfscan_BRCT_dom,prints_DNA_nucleotidylexotransferase,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	62	0	0.00	62	7	10.14	-	-	-
FADS1	0	genome.wustl.edu	37	11	61582572	61582572	+	RNA	SNP	G	G	A			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	11	61582572	61582572	G	A	SNP	FADS1	ENST00000541683	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FADS1	HGNC	ENSG00000149485	114	0	0.00	59	22	27.16	-	-	-
HTT	0	genome.wustl.edu	37	4	3221994	3221994	+	Missense_Mutation	SNP	A	A	C			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	4	3221994	3221994	A	C	SNP	HTT	ENST00000355072	human	ensembl	69_37n	+1	known	missense	c.7328	p.K2443T	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	47	0	0.00	41	13	24.07	-	-	-
OR52B2	0	genome.wustl.edu	37	11	6191379	6191379	+	Missense_Mutation	SNP	G	G	A			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	11	6191379	6191379	G	A	SNP	OR52B2	ENST00000530810	human	ensembl	69_37n	-1	known	missense	c.178	p.P60S	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR52B2	HGNC	ENSG00000255307	63	0	0.00	61	10	14.08	-	-	-
OR7D2	0	genome.wustl.edu	37	19	9297079	9297080	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	19	9297079	9297080	-	T	INS	OR7D2	ENST00000344248	human	ensembl	69_37n	+1	known	frame_shift_ins	c.622_623	p.P210fs	0.001:0.001	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR7D2	HGNC	ENSG00000188000	65	0	0.00	34	9	20.93	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	53	0	0.00	48	17	26.15	-	-	-
RGS12	0	genome.wustl.edu	37	4	3319691	3319691	+	Silent	SNP	G	G	A			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	4	3319691	3319691	G	A	SNP	RGS12	ENST00000344733	human	ensembl	69_37n	+1	known	silent	c.1794	p.P598	0.128	NULL	pfam_Raf-like_ras-bd,pfam_Regulat_G_prot_signal,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTyr_interaction_dom,smart_Regulat_G_prot_signal,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTyr_interaction_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal,prints_Regulat_G_prot_signal	-	no_errors	RGS12	HGNC	ENSG00000159788	56	0	0.00	35	4	10.26	-	-	-
RNF170	0	genome.wustl.edu	37	8	42729139	42729139	+	Missense_Mutation	SNP	G	G	C			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	8	42729139	42729139	G	C	SNP	RNF170	ENST00000527424	human	ensembl	69_37n	-1	known	missense	c.148	p.Q50E	1.000	NULL	pfam_DUF1232,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF170	HGNC	ENSG00000120925	57	0	0.00	55	8	12.70	-	-	-
SPON1	0	genome.wustl.edu	37	11	14281248	14281248	+	Splice_Site	SNP	G	G	A			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	11	14281248	14281248	G	A	SNP	SPON1	ENST00000310358	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268	91	0	0	59	9	13.24	-	-	-
SPON1	0	genome.wustl.edu	37	11	14281248	14281248	+	Splice_Site	SNP	G	G	A			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	11	14281248	14281248	G	A	SNP	SPON1	ENST00000310358	human	ensembl	69_37n	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268	91	0	0.00	59	9	13.24	-	-	-
SRM	0	genome.wustl.edu	37	1	11116774	11116774	+	Missense_Mutation	SNP	G	G	A			TCGA-HN-A2OB-01A-21D-A27P-09	TCGA-HN-A2OB-10B-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9c888118-477d-4f12-afb7-653f05afa824	d739bf12-a886-410b-bc7b-22edf99c393d	1	11116774	11116774	G	A	SNP	SRM	ENST00000376957	human	ensembl	69_37n	-1	known	missense	c.422	p.A141V	1.000	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	pfam_Spermidine/spermine_synthase,pfscan_Spermidine/spermine_synthase,tigrfam_Spermidine/spermine_synthase	-	no_errors	SRM	HGNC	ENSG00000116649	65	0	0.00	50	14	21.88	-	-	-
