Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
APBA2	0	genome.wustl.edu	37	15	29346952	29346952	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	15	29346952	29346952	G	A	SNP	APBA2	ENST00000558259	human	ensembl	69_37n	+1	known	missense	c.865	p.E289K	0.991	NULL	pfam_PTyr_interaction_dom,pfam_PDZ,superfamily_PDZ,smart_PTyr_interaction_dom,smart_PDZ,pfscan_PDZ,pfscan_PTyr_interaction_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	91	0	0.00	76	37	32.74	-	-	-
C11orf53	0	genome.wustl.edu	37	11	111156557	111156557	+	Silent	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	11	111156557	111156557	G	A	SNP	C11orf53	ENST00000280325	human	ensembl	69_37n	+1	known	silent	c.489	p.S163	0.054	NULL	NULL	-	no_errors	C11orf53	HGNC	ENSG00000150750	40	0	0.00	8	17	68.00	-	-	-
CARNS1	0	genome.wustl.edu	37	11	67184989	67184989	+	Missense_Mutation	SNP	C	C	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	11	67184989	67184989	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	69_37n	+1	known	missense	c.115	p.P39S	0.932	superfamily_TIL_dom	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	79	0	0.00	45	24	34.78	-	-	-
CDH7	0	genome.wustl.edu	37	18	63529956	63529956	+	Nonsense_Mutation	SNP	C	C	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	18	63529956	63529956	C	A	SNP	CDH7	ENST00000323011	human	ensembl	69_37n	+1	known	nonsense	c.1667	p.S556*	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	66	0	0.00	41	27	39.71	-	-	-
CSTF2	0	genome.wustl.edu	37	X	100093207	100093207	+	RNA	DEL	T	T	-			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	100093207	100093207	T	-	DEL	CSTF2	ENST00000486615	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CSTF2	HGNC	ENSG00000101811	16	0	0.00	8	3	27.27	-	-	-
CUL2	0	genome.wustl.edu	37	10	35314087	35314087	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	10	35314087	35314087	G	T	SNP	CUL2	ENST00000537177	human	ensembl	69_37n	-1	known	missense	c.1714	p.L572I	1.000	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094	52	0	0.00	32	22	40.74	-	-	-
DMD	0	genome.wustl.edu	37	X	31198556	31198556	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	31198556	31198556	G	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.10017	p.S3339R	1.000	pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_Znf_ZZ	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	40	0	0.00	21	13	38.24	-	-	-
EHD3	0	genome.wustl.edu	37	2	31483605	31483605	+	Silent	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	31483605	31483605	G	A	SNP	EHD3	ENST00000322054	human	ensembl	69_37n	+1	known	silent	c.732	p.V244	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016	51	0	0.00	61	63	50.81	-	-	-
EHD3	0	genome.wustl.edu	37	2	31489433	31489433	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	31489433	31489433	G	A	SNP	EHD3	ENST00000322054	human	ensembl	69_37n	+1	known	missense	c.1471	p.D491N	1.000	smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016	51	0	0.00	43	51	54.26	-	-	-
FMNL3	0	genome.wustl.edu	37	12	50055828	50055828	+	Missense_Mutation	SNP	C	C	G			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	12	50055828	50055828	C	G	SNP	FMNL3	ENST00000293590	human	ensembl	69_37n	-1	known	missense	c.373	p.V125L	1.000	pfam_Drf_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_actin-bd,pfam_Drf_FH3,pfam_Drf_GTPase-bd,superfamily_FH2_actin-bd,superfamily_ARM-type_fold,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FMNL3	HGNC	ENSG00000161791	48	0	0.00	26	17	39.53	-	-	-
GATA3	0	genome.wustl.edu	37	10	8106093	8106094	+	Frame_Shift_Ins	INS	-	-	G			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	10	8106093	8106094	-	G	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.916_917	p.R307fs	1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	50	0	0.00	36	15	29.41	-	-	-
HDAC6	0	genome.wustl.edu	37	X	48681345	48681345	+	Missense_Mutation	SNP	T	T	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	48681345	48681345	T	A	SNP	HDAC6	ENST00000444343	human	ensembl	69_37n	+1	known	missense	c.2578	p.S860T	0.000	NULL	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631	24	0	0.00	13	10	43.48	-	-	-
HEATR5A	0	genome.wustl.edu	37	14	31844038	31844038	+	Missense_Mutation	SNP	T	T	C			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	14	31844038	31844038	T	C	SNP	HEATR5A	ENST00000538864	human	ensembl	69_37n	-1	novel	missense	c.728	p.E243G	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR5A	HGNC	ENSG00000129493	26	0	0.00	21	4	16.00	-	-	-
HMCN1	0	genome.wustl.edu	37	1	186086186	186086186	+	Nonsense_Mutation	SNP	T	T	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	1	186086186	186086186	T	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	nonsense	c.11622	p.Y3874*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	62	0	0.00	47	20	29.85	-	-	-
HNRPLL	0	genome.wustl.edu	37	2	38818727	38818728	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	38818727	38818728	CA	-	DEL	HNRPLL	ENST00000449105	human	ensembl	69_37n	-1	known	frame_shift_del	c.253_252	p.C84fs	1.000:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP-L_PTB	-	no_errors	HNRPLL	HGNC	ENSG00000143889	16	0	0.00	21	6	22.22	-	-	-
IRX3	0	genome.wustl.edu	37	16	54319430	54319431	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	16	54319430	54319431	GC	-	DEL	IRX3	ENST00000329734	human	ensembl	69_37n	-1	known	frame_shift_del	c.363_362	p.G121fs	1.000:1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,smart_Iroquois_homeo,pfscan_Homeodomain	-	no_errors	IRX3	HGNC	ENSG00000177508	46	0	0.00	11	25	67.57	-	-	-
KCNS3	0	genome.wustl.edu	37	2	18112885	18112885	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	18112885	18112885	G	T	SNP	KCNS3	ENST00000304101	human	ensembl	69_37n	+1	known	missense	c.610	p.V204F	0.164	prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745	41	0	0.00	63	17	21.25	-	-	-
MARC2	0	genome.wustl.edu	37	1	220936309	220936309	+	Silent	SNP	T	T	C			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	1	220936309	220936309	T	C	SNP	MARC2	ENST00000366913	human	ensembl	69_37n	+1	known	silent	c.667	p.L223	0.996	pfam_MoCF_Sase_C,superfamily_Pyrv_Knase-like_insert_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MARC2	HGNC	ENSG00000117791	65	0	0.00	28	28	50.00	-	-	-
MTHFSD	0	genome.wustl.edu	37	16	86585647	86585647	+	Nonsense_Mutation	SNP	C	C	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	16	86585647	86585647	C	T	SNP	MTHFSD	ENST00000566469	human	ensembl	69_37n	-1	putative	nonsense	c.210	p.W70*	0.992	pfam_FTHF_cligase	pfam_FTHF_cligase	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MTHFSD	HGNC	ENSG00000103248	74	0	0.00	31	4	11.43	-	-	-
NARS	0	genome.wustl.edu	37	18	55274371	55274371	+	Silent	SNP	C	C	G			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	18	55274371	55274371	C	G	SNP	NARS	ENST00000256854	human	ensembl	69_37n	-1	known	silent	c.996	p.L332	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asn-tRNA-synth_IIb	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-synth_IIb	-	no_errors	NARS	HGNC	ENSG00000134440	59	0	0.00	29	18	38.30	-	-	-
NCOA1	0	genome.wustl.edu	37	2	24949504	24949504	+	Missense_Mutation	SNP	A	A	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	24949504	24949504	A	T	SNP	NCOA1	ENST00000348332	human	ensembl	69_37n	+1	known	missense	c.2646	p.Q882H	0.993	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_Nuc_rcpt_coact,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_HLH_DNA-bd	-	no_errors	NCOA1	HGNC	ENSG00000084676	65	0	0.00	26	6	18.75	-	-	-
NCOR1	0	genome.wustl.edu	37	17	15965426	15965426	+	Nonsense_Mutation	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	17	15965426	15965426	G	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.5380	p.R1794*	0.994	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	57	0	0.00	20	20	50.00	-	-	-
PLEKHB2	0	genome.wustl.edu	37	2	132110828	132110828	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	132110828	132110828	G	T	SNP	PLEKHB2	ENST00000303908	human	ensembl	69_37n	+1	known	missense	c.659	p.R220M	0.981	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	31	0	0.00	26	9	25.71	-	-	-
RNF113A	0	genome.wustl.edu	37	X	119004944	119004944	+	Silent	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	119004944	119004944	G	A	SNP	RNF113A	ENST00000371442	human	ensembl	69_37n	-1	known	silent	c.633	p.C211	1.000	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	18	0	0.00	16	10	38.46	-	-	-
RP1L1	0	genome.wustl.edu	37	8	10468681	10468681	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	8	10468681	10468681	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	69_37n	-1	known	missense	c.2927	p.A976V	0.010	NULL	pfam_Doublecortin_dom,superfamily_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	20	0	0.00	22	16	42.11	-	-	-
RPGRIP1	0	genome.wustl.edu	37	14	21794169	21794169	+	Frame_Shift_Del	DEL	C	C	-			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	14	21794169	21794169	C	-	DEL	RPGRIP1	ENST00000206660	human	ensembl	69_37n	+1	known	frame_shift_del	c.2547	p.Q850fs	0.987	superfamily_C2_Ca/lipid-bd_dom_CaLB	pfam_DUF3250,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	RPGRIP1	HGNC	ENSG00000092200	103	0	0.00	66	32	32.65	-	-	-
RPL17-C18ORF32	0	genome.wustl.edu	37	18	47017223	47017223	+	Silent	SNP	A	A	C			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	18	47017223	47017223	A	C	SNP	RPL17-C18ORF32	ENST00000418495	human	ensembl	69_37n	-1	known	silent	c.156	p.T52	0.931	pfam_Ribosomal_L22,superfamily_Ribosomal_L22,tigrfam_Ribosomal_L22/L17_euk/arc	pfam_Ribosomal_L22,superfamily_Ribosomal_L22,tigrfam_Ribosomal_L22/L17_euk/arc	-	no_errors	RP11-110H1.2	Clone_based_vega_gene	ENSG00000215472	96	0	0.00	84	31	26.96	-	-	-
SF3B4	0	genome.wustl.edu	37	1	149898647	149898648	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	1	149898647	149898648	AG	-	DEL	SF3B4	ENST00000271628	human	ensembl	69_37n	-1	known	frame_shift_del	c.327_326	p.P109fs	0.926:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368	131	0	0.00	558	82	12.65	-	-	-
TLR4	0	genome.wustl.edu	37	9	120475369	120475369	+	Missense_Mutation	SNP	A	A	C			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	9	120475369	120475369	A	C	SNP	TLR4	ENST00000355622	human	ensembl	69_37n	+1	known	missense	c.963	p.E321D	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869	51	0	0.00	30	14	31.82	-	-	-
TLR8	0	genome.wustl.edu	37	X	12940143	12940143	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	X	12940143	12940143	G	A	SNP	TLR8	ENST00000218032	human	ensembl	69_37n	+1	known	missense	c.2984	p.R995Q	0.941	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916	89	0	0.00	41	17	29.31	-	-	-
TMEM18	0	genome.wustl.edu	37	2	676599	676599	+	Missense_Mutation	SNP	G	G	C			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	676599	676599	G	C	SNP	TMEM18	ENST00000405941	human	ensembl	69_37n	-1	novel	missense	c.41	p.P14R	0.001	NULL	NULL	-	no_errors	TMEM18	HGNC	ENSG00000151353	62	0	0.00	103	17	14.17	-	-	-
TRPM2	0	genome.wustl.edu	37	21	45821603	45821603	+	Silent	SNP	C	C	T			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	21	45821603	45821603	C	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	+1	known	silent	c.2361	p.R787	0.000	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	83	0	0.00	37	43	53.75	-	-	-
TTN	0	genome.wustl.edu	37	2	179416362	179416362	+	Frame_Shift_Del	DEL	G	G	-			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	179416362	179416362	G	-	DEL	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	frame_shift_del	c.83561	p.P27854fs	1.000	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	40	0	0.00	11	2	15.38	-	-	-
XDH	0	genome.wustl.edu	37	2	31573005	31573005	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	2	31573005	31573005	G	A	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.2716	p.L906F	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	52	0	0.00	73	9	10.98	-	-	-
ZSCAN5C	0	genome.wustl.edu	37	19	56717353	56717353	+	Missense_Mutation	SNP	A	A	G			TCGA-OL-A5D8-01A-11D-A27P-09	TCGA-OL-A5D8-10A-01D-A27P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a4a09ce0-c9d8-40bf-a595-f164256cabe7	30ff9e09-daf1-4754-8c1e-61bcb8e7a002	19	56717353	56717353	A	G	SNP	ZSCAN5C	ENST00000376267	human	ensembl	69_37n	+1	known	missense	c.71	p.Q24R	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5C	HGNC	ENSG00000204532	37	0	0.00	27	4	12.90	-	-	-
