Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
RERE	473	broad.mit.edu	37	1	8674637	8674637	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:8674637C>T	uc001ape.2	-	5	1315	c.505G>A	c.(505-507)GGG>AGG	p.G169R	RERE_uc001apf.2_Missense_Mutation_p.G169R|RERE_uc001aph.1_Missense_Mutation_p.G169R	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	169	BAH.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GGCCCTCTCCCGGCTTCAGAA	0.507		NA											13	183					0	0	0	0
PEX14	5195	broad.mit.edu	37	1	10659377	10659377	+	Silent	SNP	A	A	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:10659377A>C	uc001arn.2	+	4	273	c.252A>C	c.(250-252)ACA>ACC	p.T84T	PEX14_uc009vmu.1_Intron|PEX14_uc009vmv.2_Silent_p.T20T|PEX14_uc010oam.1_Silent_p.T20T|PEX14_uc010oan.1_Intron|PEX14_uc009vmw.2_Silent_p.T20T	NM_004565	NP_004556	O75381	PEX14_HUMAN	peroxisomal biogenesis factor 14	84					negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|protein homooligomerization|protein import into peroxisome matrix|transmembrane transport	integral to membrane|nucleus|peroxisomal membrane|protein complex	protein N-terminus binding|transcription corepressor activity			breast(1)	1	Ovarian(185;0.203)	all_lung(284;6.02e-06)|Lung NSC(185;9.62e-06)|Renal(390;0.000147)|Breast(348;0.000932)|Colorectal(325;0.00215)|Hepatocellular(190;0.00913)|Ovarian(437;0.023)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0292)|Colorectal(212;9.13e-08)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000482)|Kidney(185;0.00174)|KIRC - Kidney renal clear cell carcinoma(229;0.00457)|STAD - Stomach adenocarcinoma(132;0.0249)|READ - Rectum adenocarcinoma(331;0.0419)		GCCCAGCCACACAGGTGGTTC	0.557		NA											10	157					0	0	0	0
TARDBP	23435	broad.mit.edu	37	1	11073908	11073908	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:11073908C>T	uc001art.2	+	2	258	c.124C>T	c.(124-126)CGC>TGC	p.R42C	TARDBP_uc010oap.1_5'UTR	NM_007375	NP_031401	Q13148	TADBP_HUMAN	TAR DNA binding protein	42					3'-UTR-mediated mRNA stabilization|cell death|mRNA processing|negative regulation by host of viral transcription|RNA splicing|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0578)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.37e-07)|COAD - Colon adenocarcinoma(227;7.38e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)		GTGTGGGCTTCGCTACAGGAA	0.542		NA											11	90					0	0	0	0
AADACL3	126767	broad.mit.edu	37	1	12785336	12785336	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:12785336C>A	uc009vnn.1	+	4	659	c.426C>A	c.(424-426)GCC>GCA	p.A142A	AADACL3_uc001aug.1_Silent_p.A72A	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	142							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCAATAGCCGCAGTGGTTT	0.567		NA											12	154					7.04e-09	7.57e-09	1	0
NIPAL3	57185	broad.mit.edu	37	1	24779986	24779986	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:24779986C>T	uc001bjh.2	+	7	1036	c.629C>T	c.(628-630)GCG>GTG	p.A210V	NIPAL3_uc010oek.1_Missense_Mutation_p.A210V|NIPAL3_uc001bjg.2_Missense_Mutation_p.A210V|NIPAL3_uc009vrc.2_Missense_Mutation_p.A128V|NIPAL3_uc001bji.2_5'Flank	NM_020448	NP_065181	Q6P499	NPAL3_HUMAN	NIPA-like domain containing 3	210	Helical; (Potential).					integral to membrane					0						CTCTTGGTGGCGTTACTTGGT	0.483		NA											6	56					0	0	0	0
CATSPER4	378807	broad.mit.edu	37	1	26520297	26520297	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:26520297C>T	uc010oez.1	+	3	377	c.377C>T	c.(376-378)TCT>TTT	p.S126F	CATSPER4_uc010oey.1_5'UTR|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	126	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		GAGTTGTTCTCTACCATAGAT	0.507		NA											27	227					0	0	0	0
WDTC1	23038	broad.mit.edu	37	1	27614167	27614167	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:27614167C>G	uc009vst.2	+	6	829	c.294C>G	c.(292-294)TTC>TTG	p.F98L	WDTC1_uc001bno.2_Missense_Mutation_p.F98L|WDTC1_uc001bnp.1_RNA	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	98	WD 2.						protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		CTATATAGTTCCTGCCTCACG	0.542		NA											3	31					0	0	0	0
AHDC1	27245	broad.mit.edu	37	1	27874901	27874901	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:27874901G>A	uc009vsy.2	-	6	4695	c.3726C>T	c.(3724-3726)TTC>TTT	p.F1242F	AHDC1_uc009vsz.1_Silent_p.F1242F	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1242							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GTGAGGCCTCGAACAGGTCCA	0.652		NA											8	59					0	0	0	0
SDC3	9672	broad.mit.edu	37	1	31347180	31347180	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:31347180G>A	uc001bse.2	-	4	1173	c.1126C>T	c.(1126-1128)CAG>TAG	p.Q376*	SDC3_uc001bsd.2_Nonsense_Mutation_p.Q318*	NM_014654	NP_055469	O75056	SDC3_HUMAN	syndecan 3	376	Extracellular (Potential).					integral to membrane	cytoskeletal protein binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(586;0.0393)|Colorectal(325;0.0466)|all_neural(195;0.0966)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)		STAD - Stomach adenocarcinoma(196;0.0197)|READ - Rectum adenocarcinoma(331;0.0649)		ATACTCTTCTGAGGCAGCTGA	0.652		NA											7	52					0	0	0	0
HCRTR1	3061	broad.mit.edu	37	1	32085276	32085276	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:32085276G>A	uc009vtx.2	+	4	728	c.343G>A	c.(343-345)GGC>AGC	p.G115S	HCRTR1_uc001btb.2_Intron|HCRTR1_uc001btc.3_Intron|HCRTR1_uc001btd.2_Missense_Mutation_p.G115S|HCRTR1_uc010ogl.1_Missense_Mutation_p.G115S	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	115	Extracellular (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		CTGGCTGTTCGGCCATGCCCT	0.582		NA											7	52					0	0	0	0
EIF2C3	192669	broad.mit.edu	37	1	36520550	36520550	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:36520550A>G	uc001bzp.2	+	18	2534	c.2278A>G	c.(2278-2280)ACC>GCC	p.T760A	EIF2C3_uc001bzq.2_Missense_Mutation_p.T526A	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	760	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TCTATAGGGTACCAGTCGTCC	0.308		NA											10	149					0	0	0	0
FOXJ3	22887	broad.mit.edu	37	1	42655054	42655054	+	Missense_Mutation	SNP	G	G	A	rs61753350		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:42655054G>A	uc001che.2	-	12	1685	c.1373C>T	c.(1372-1374)GCG>GTG	p.A458V	FOXJ3_uc001chf.2_Missense_Mutation_p.A458V|FOXJ3_uc001chg.2_Missense_Mutation_p.A458V	NM_014947	NP_055762	Q9UPW0	FOXJ3_HUMAN	forkhead box J3	458					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)	2	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ATCAAGTGTCGCATACCAATC	0.403		NA											7	67					0	0	0	0
EIF2B3	8891	broad.mit.edu	37	1	45341334	45341334	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:45341334C>G	uc001cmt.1	-	9	1136	c.1009G>C	c.(1009-1011)GAA>CAA	p.E337Q	EIF2B3_uc001cmu.1_Missense_Mutation_p.E337Q|EIF2B3_uc001cmv.1_Intron|EIF2B3_uc001cmw.2_Missense_Mutation_p.E337Q	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	337					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACTGGTGGTTCTTCTGGACAG	0.448		NA											5	80					0	0	0	0
POMGNT1	55624	broad.mit.edu	37	1	46655573	46655573	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:46655573G>A	uc001cpe.2	-	20	1902	c.1738C>T	c.(1738-1740)CGA>TGA	p.R580*	POMGNT1_uc010olx.1_Nonsense_Mutation_p.R558*|POMGNT1_uc010oly.1_RNA|POMGNT1_uc010olz.1_Nonsense_Mutation_p.R437*|POMGNT1_uc001cpg.2_Nonsense_Mutation_p.R580*|POMGNT1_uc001cpf.2_Nonsense_Mutation_p.R247*	NM_017739	NP_060209	Q8WZA1	PMGT1_HUMAN	O-linked mannose	580	Lumenal (Potential).				protein N-linked glycosylation|protein O-linked glycosylation	Golgi membrane|integral to membrane|microsome	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TTCTCCATTCGAATAAAGGCC	0.547		NA											6	56					0	0	0	0
SLC5A9	200010	broad.mit.edu	37	1	48703350	48703350	+	Splice_Site	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:48703350G>A	uc001cro.2	+	11	1345	c.1293_splice	c.e11-1	p.R431_splice	SLC5A9_uc010oms.1_Splice_Site|SLC5A9_uc001crn.2_Splice_Site_p.R456_splice|SLC5A9_uc010omt.1_Splice_Site_p.R445_splice|SLC5A9_uc001crp.2_Splice_Site_p.R98_splice|SLC5A9_uc010omu.1_Splice_Site_p.R98_splice|SLC5A9_uc009vyt.1_5'Flank	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose							integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						CTCTCTGGCAGAGTGTTTGTG	0.567		NA											6	98					0	0	0	0
MRPL37	51253	broad.mit.edu	37	1	54681872	54681872	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:54681872G>A	uc001cxa.3	+	6	1126	c.1049G>A	c.(1048-1050)CGT>CAT	p.R350H	MRPL37_uc009vzp.2_Missense_Mutation_p.R219H|MRPL37_uc001cxb.1_Missense_Mutation_p.R350H|MRPL37_uc001cxc.3_Missense_Mutation_p.R38H|MRPL37_uc010oob.1_RNA	NM_016491	NP_057575	Q9BZE1	RM37_HUMAN	mitochondrial ribosomal protein L37 precursor	350					translation	mitochondrial ribosome	structural constituent of ribosome				0						ACGGATGGACGTGTCTTCCAT	0.517		NA											22	206					0	0	0	0
USP24	23358	broad.mit.edu	37	1	55561055	55561055	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:55561055C>T	uc001cyg.3	-	48	5596	c.5596G>A	c.(5596-5598)GAT>AAT	p.D1866N		NM_015306	NP_056121	Q9UPU5	UBP24_HUMAN	ubiquitin specific protease 24	2026					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(6)|kidney(6)|breast(1)	13						CGGCGCACATCAGTGTATGGG	0.388		NA											4	39					0	0	0	0
PDE4B	5142	broad.mit.edu	37	1	66827446	66827446	+	Silent	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:66827446C>G	uc001dcn.2	+	10	1181	c.990C>G	c.(988-990)GTC>GTG	p.V330V	PDE4B_uc009war.2_Silent_p.V238V|PDE4B_uc001dco.2_Silent_p.V330V|PDE4B_uc001dcp.2_Silent_p.V315V|PDE4B_uc001dcq.2_Silent_p.V158V|PDE4B_uc009was.2_Silent_p.V97V	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	330					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	GCTTTGGAGTCAACACTGAAA	0.418		NA											7	84					0	0	0	0
SH3GLB1	51100	broad.mit.edu	37	1	87200333	87200333	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:87200333G>A	uc001dlw.2	+	6	945	c.619G>A	c.(619-621)GAG>AAG	p.E207K	SH3GLB1_uc001dlx.2_Missense_Mutation_p.E228K|SH3GLB1_uc001dly.2_Missense_Mutation_p.E236K|SH3GLB1_uc001dlz.2_Missense_Mutation_p.E107K	NM_016009	NP_057093	Q9Y371	SHLB1_HUMAN	SH3-containing protein SH3GLB1	207	BAR.				anti-apoptosis|filopodium assembly|signal transduction	Golgi membrane|mitochondrial outer membrane	cytoskeletal adaptor activity|protein homodimerization activity|SH3 domain binding				0		Lung NSC(277;0.209)		all cancers(265;0.0136)|Epithelial(280;0.0414)		TCGTCAAGCAGAGATTACCAG	0.353		NA											7	74					0	0	0	0
ATXN7L2	127002	broad.mit.edu	37	1	110030321	110030321	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:110030321G>A	uc001dxr.2	+	5	610	c.595G>A	c.(595-597)GAG>AAG	p.E199K	ATXN7L2_uc001dxs.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	199										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		AGAGAACATCGAGATCATCCC	0.597		NA											21	182					0	0	0	0
EPS8L3	79574	broad.mit.edu	37	1	110301152	110301152	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:110301152C>T	uc001dyr.1	-	7	740	c.595G>A	c.(595-597)GAG>AAG	p.E199K	EPS8L3_uc001dys.1_Missense_Mutation_p.E199K|EPS8L3_uc001dyq.1_Missense_Mutation_p.E200K|EPS8L3_uc009wfm.1_Missense_Mutation_p.E166K|EPS8L3_uc009wfn.1_Missense_Mutation_p.E166K|EPS8L3_uc009wfo.1_Missense_Mutation_p.E146K	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	199	Pro-rich.					cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		TTACTGTGCTCTAGGGTCCTC	0.577		NA											12	144					0	0	0	0
KCNC4	3749	broad.mit.edu	37	1	110765834	110765834	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:110765834C>T	uc001dzh.2	+	2	984	c.927C>T	c.(925-927)TTC>TTT	p.F309F	KCNC4_uc001dzf.2_Silent_p.F309F|KCNC4_uc009wfr.2_Silent_p.F309F|KCNC4_uc001dzg.2_Silent_p.F309F|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	309	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		CGCTGGACTTCGTCAAGAACC	0.607		NA											8	92					0	0	0	0
KCNA3	3738	broad.mit.edu	37	1	111216030	111216030	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:111216030C>T	uc001dzv.1	-	1	1626	c.1402G>A	c.(1402-1404)GGT>AGT	p.G468S		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	468	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity	p.G468S(1)		ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTCAAGACACCGGCGATGGCA	0.527		NA											9	98					0	0	0	0
SPAG17	200162	broad.mit.edu	37	1	118530499	118530499	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:118530499G>A	uc001ehk.2	-	40	5695	c.5627C>T	c.(5626-5628)ACA>ATA	p.T1876I		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1876	Potential.					cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TGAGGATGCTGTGTGTCTATG	0.388		NA											5	75					0	0	0	0
C1orf56	54964	broad.mit.edu	37	1	151020330	151020330	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:151020330C>A	uc001ewn.2	+	1	72	c.7C>A	c.(7-9)CCC>ACC	p.P3T		NM_017860	NP_060330	Q9BUN1	CA056_HUMAN	hypothetical protein LOC54964 precursor	3						extracellular region					0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CCCCATGGTCCCCGCCGCCGG	0.711		NA											4	28					2.56e-06	2.7e-06	1	0
C1orf104	284618	broad.mit.edu	37	1	155290588	155290588	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:155290588C>G	uc001fki.2	-	2	969	c.692G>C	c.(691-693)AGA>ACA	p.R231T	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_Intron|RUSC1_uc001fkj.2_5'Flank|RUSC1_uc001fkk.2_5'Flank|RUSC1_uc009wqn.1_5'Flank|RUSC1_uc009wqo.1_5'Flank	NM_001039517	NP_001034606	Q66K80	RUAS1_HUMAN	hypothetical protein LOC284618	231											0	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.32e-10)|all cancers(21;3.51e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			ATCAAACCCTCTAGGTGGGTG	0.612		NA											5	52					0	0	0	0
GON4L	54856	broad.mit.edu	37	1	155735586	155735586	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:155735586G>A	uc001flz.2	-	21	3775	c.3678C>T	c.(3676-3678)CAC>CAT	p.H1226H	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Silent_p.H1226H|GON4L_uc009wrh.1_Silent_p.H1226H|GON4L_uc001fma.1_Silent_p.H1226H|GON4L_uc001fmb.3_Silent_p.H422H|GON4L_uc001fmc.2_Silent_p.H1226H|GON4L_uc001fmd.3_Silent_p.H1226H|GON4L_uc009wri.2_Silent_p.H812H	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1226					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCACATTCACGTGGGCCTTAT	0.493		NA											10	103					0	0	0	0
BCAN	63827	broad.mit.edu	37	1	156617318	156617318	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:156617318G>A	uc001fpp.2	+	4	821	c.485G>A	c.(484-486)CGA>CAA	p.R162Q	BCAN_uc001fpo.2_Missense_Mutation_p.R162Q	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	162	Link 1.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TTTCTCTACCGAGAGGGCTCT	0.622		NA											10	86					0	0	0	0
BCAN	63827	broad.mit.edu	37	1	156617836	156617836	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:156617836C>T	uc001fpp.2	+	5	1039	c.703C>T	c.(703-705)CGG>TGG	p.R235W	BCAN_uc001fpo.2_Missense_Mutation_p.R235W	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	235	Link 1.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCCCGGGGTCCGGAACTATGG	0.517		NA											20	191					0	0	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156914199	156914199	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:156914199C>T	uc001fqo.2	-	30	3938	c.2898G>A	c.(2896-2898)ATG>ATA	p.M966I	ARHGEF11_uc010phu.1_Missense_Mutation_p.M382I|ARHGEF11_uc001fqn.2_Missense_Mutation_p.M1006I	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	966	PH.				actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCTCATGGATCATTTTTCTGG	0.393		NA											11	118					0	0	0	0
KCNJ10	3766	broad.mit.edu	37	1	160012273	160012273	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:160012273C>T	uc001fuw.1	-	2	200	c.50G>A	c.(49-51)AGC>AAC	p.S17N		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	17	Cytoplasmic (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TAGGGGCCGGCTTTCTGTCTG	0.537		NA											7	106					0	0	0	0
KCNJ9	3765	broad.mit.edu	37	1	160053931	160053931	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:160053931C>T	uc001fuy.1	+	2	353	c.111C>T	c.(109-111)AAC>AAT	p.N37N		NM_004983	NP_004974	Q92806	IRK9_HUMAN	potassium inwardly-rectifying channel subfamily	37	Cytoplasmic (By similarity).				synaptic transmission	integral to membrane|plasma membrane	G-protein activated inward rectifier potassium channel activity|protein binding			ovary(1)|skin(1)	2	all_cancers(52;5.86e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			AGCAGGGCAACGTGCGCGAGA	0.572		NA											3	8					0	0	0	0
USF1	7391	broad.mit.edu	37	1	161012411	161012411	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:161012411G>C	uc001fxi.2	-	4	303	c.108C>G	c.(106-108)ATC>ATG	p.I36M	USF1_uc001fxj.2_Translation_Start_Site	NM_007122	NP_009053	P22415	USF1_HUMAN	upstream stimulatory factor 1 isoform 1	36					cellular response to insulin stimulus|glucose homeostasis|late viral mRNA transcription|lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter by glucose|response to hypoxia|response to UV	transcription factor complex	bHLH transcription factor binding|histone deacetylase binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(52;6.73e-18)|Breast(13;0.012)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CAGCTGACTGGATGCTGGCAA	0.537		NA											4	49					0	0	0	0
FCGR2B	2213	broad.mit.edu	37	1	161647336	161647336	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:161647336G>A	uc001gaz.1	+	8	1018	c.926G>A	c.(925-927)CGT>CAT	p.R309H	FCGR2B_uc001gay.1_Missense_Mutation_p.R308H|FCGR2B_uc001gba.1_Missense_Mutation_p.R289H|FCGR2B_uc001gbb.1_Missense_Mutation_p.R290H|FCGR2B_uc009wun.1_Missense_Mutation_p.R302H	NM_004001	NP_003992	P31994	FCG2B_HUMAN	Fc fragment of IgG, low affinity IIb, receptor	309	Cytoplasmic (Potential).				immune response|interspecies interaction between organisms|regulation of immune response	integral to membrane|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GACCAGAACCGTATTTAGTCT	0.478		NA	T	?	ALL								9	199					0	0	0	0
OLFML2B	25903	broad.mit.edu	37	1	161993108	161993108	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:161993108G>A	uc001gbu.2	-	1	537	c.113C>T	c.(112-114)GCG>GTG	p.A38V	OLFML2B_uc010pkq.1_Missense_Mutation_p.A38V	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	38										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			CTCCGCAGGCGCCACTGTCTG	0.597		NA											9	81					0	0	0	0
UCK2	7371	broad.mit.edu	37	1	165860506	165860506	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:165860506C>G	uc001gdp.2	+	3	484	c.303C>G	c.(301-303)ATC>ATG	p.I101M	UCK2_uc010plb.1_Nonsense_Mutation_p.S11*	NM_012474	NP_036606	Q9BZX2	UCK2_HUMAN	uridine-cytidine kinase 2	101					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity			ovary(1)	1	all_hematologic(923;0.048)|Acute lymphoblastic leukemia(8;0.155)					TCAAAGAAATCACTGAAGGGA	0.413		NA											6	62					0	0	0	0
ADCY10	55811	broad.mit.edu	37	1	167817662	167817662	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:167817662C>G	uc001ger.2	-	19	2672	c.2374G>C	c.(2374-2376)GAA>CAA	p.E792Q	ADCY10_uc009wvk.2_Missense_Mutation_p.E700Q|ADCY10_uc010plj.1_Missense_Mutation_p.E639Q|ADCY10_uc009wvl.2_Missense_Mutation_p.E791Q	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	792					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TGACAGACTTCTTCACTTTCC	0.338		NA											9	168					0	0	0	0
DNM3	26052	broad.mit.edu	37	1	172011177	172011177	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:172011177G>C	uc001gie.2	+	8	1197	c.1021G>C	c.(1021-1023)GAG>CAG	p.E341Q	DNM3_uc001gid.3_Missense_Mutation_p.E341Q|DNM3_uc009wwb.2_Missense_Mutation_p.E341Q|DNM3_uc001gif.2_Missense_Mutation_p.E341Q	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	341					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						TGTGGACTTTGAGAAGAGAAT	0.378		NA											14	147					0	0	0	0
RASAL2	9462	broad.mit.edu	37	1	178414790	178414790	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:178414790C>T	uc001glr.2	+	7	1301	c.1176C>T	c.(1174-1176)GAC>GAT	p.D392D	RASAL2_uc001glq.2_Silent_p.D540D	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	392	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						ATCTTCATGACGCACTGGGTA	0.388		NA											10	120					0	0	0	0
KIAA1614	57710	broad.mit.edu	37	1	180885980	180885980	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:180885980C>T	uc001gok.2	+	2	808	c.741C>T	c.(739-741)GGC>GGT	p.G247G		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	247										ovary(3)|skin(1)	4						TTCCAGATGGCGTGGTGACAG	0.587		NA											26	323					0	0	0	0
CACNA1E	777	broad.mit.edu	37	1	181689432	181689432	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:181689432C>G	uc001gow.2	+	14	2007	c.1842C>G	c.(1840-1842)ATC>ATG	p.I614M	CACNA1E_uc009wxs.2_Missense_Mutation_p.I521M	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	614	Helical; Name=S5 of repeat II.|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCCTCTTCATCGTTGTCTTTG	0.468		NA											4	42					0	0	0	0
C1orf14	81626	broad.mit.edu	37	1	182873548	182873548	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:182873548C>G	uc001gpu.2	-	8	1639	c.1354G>C	c.(1354-1356)GAA>CAA	p.E452Q	C1orf14_uc001gpv.2_Missense_Mutation_p.E333Q|C1orf14_uc010pnz.1_Missense_Mutation_p.E310Q|C1orf14_uc001gpw.2_Missense_Mutation_p.E172Q	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	524											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		ATCATAATTTCCTCTCTCTTT	0.363		NA											8	131					0	0	0	0
ASPM	259266	broad.mit.edu	37	1	197111586	197111586	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:197111586A>G	uc001gtu.2	-	3	2053	c.1796T>C	c.(1795-1797)ATC>ACC	p.I599T	ASPM_uc001gtv.2_Missense_Mutation_p.I599T|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	599					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						GATTCTTTTGATTTCTCGCAC	0.398		NA											17	358					0	0	0	0
CRB1	23418	broad.mit.edu	37	1	197390409	197390409	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:197390409C>T	uc001gtz.2	+	6	1586	c.1451C>T	c.(1450-1452)ACC>ATC	p.T484I	CRB1_uc010poz.1_Missense_Mutation_p.T415I|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.T372I|CRB1_uc010ppb.1_Missense_Mutation_p.T484I|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_5'UTR|CRB1_uc001gub.1_Missense_Mutation_p.T133I	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	484	Extracellular (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GAAATCGCAACCACACTTTCA	0.498		NA											10	92					0	0	0	0
TNNT2	7139	broad.mit.edu	37	1	201333480	201333480	+	Silent	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:201333480G>T	uc001gwf.2	-	11	504	c.435C>A	c.(433-435)GCC>GCA	p.A145A	TNNT2_uc009wzn.2_5'Flank|TNNT2_uc009wzo.2_5'Flank|TNNT2_uc009wzp.2_5'Flank|TNNT2_uc001gwg.2_Silent_p.A135A|TNNT2_uc001gwh.2_Silent_p.A130A|TNNT2_uc001gwi.2_Silent_p.A105A|TNNT2_uc009wzr.2_Silent_p.A76A|TNNT2_uc001gwj.1_5'Flank|TNNT2_uc009wzs.1_Silent_p.A110A|TNNT2_uc001gwk.1_Silent_p.A76A|TNNT2_uc009wzt.1_Silent_p.A135A	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	145					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						GCTGCTGCTCGGCCCGCTCTG	0.642		NA											5	49					1.24e-05	1.3e-05	1	0
PPFIA4	8497	broad.mit.edu	37	1	203025986	203025986	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:203025986G>A	uc001gyz.2	+	6	1390	c.797G>A	c.(796-798)CGC>CAC	p.R266H	PPFIA4_uc009xaj.2_Missense_Mutation_p.R897H|PPFIA4_uc010pqf.1_Missense_Mutation_p.R479H|PPFIA4_uc001gza.2_Missense_Mutation_p.R266H|PPFIA4_uc001gzb.1_5'UTR	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	266					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						GGCGCCAAGCGCAAGGGCATC	0.592		NA											7	55					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215960129	215960129	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:215960129T>C	uc001hku.1	-	52	10657	c.10270A>G	c.(10270-10272)ATT>GTT	p.I3424V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3424	Fibronectin type-III 19.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ACAGTGCAAATGTGGCTGGTA	0.463		NA								HNSCC(13;0.011)			5	43					0	0	0	0
ITPKB	3707	broad.mit.edu	37	1	226829801	226829801	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:226829801T>C	uc010pvo.1	-	5	2612	c.2272A>G	c.(2272-2274)AAG>GAG	p.K758E		NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	758							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				TTCCGGGCCTTCGTGAGCTCC	0.647		NA											20	238					0	0	0	0
ITPKB	3707	broad.mit.edu	37	1	226924442	226924442	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:226924442G>A	uc010pvo.1	-	2	1058	c.718C>T	c.(718-720)CGG>TGG	p.R240W	ITPKB_uc001hqh.2_Missense_Mutation_p.R240W	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	240							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				GGGGCAGCCCGGCCGGGAAGA	0.602		NA											20	223					0	0	0	0
LYST	1130	broad.mit.edu	37	1	235969573	235969573	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:235969573C>T	uc001hxj.2	-	6	3038	c.2863G>A	c.(2863-2865)GAA>AAA	p.E955K	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.E955K	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	955					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TGCATATGTTCAGGAGAAGGC	0.458		NA							Chediak-Higashi_syndrome				9	130					0	0	0	0
CUBN	8029	broad.mit.edu	37	10	16957109	16957109	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:16957109T>C	uc001ioo.2	-	47	7325	c.7273A>G	c.(7273-7275)ACT>GCT	p.T2425A		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2425	CUB 17.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ACCACAGCAGTATTGCTAGAA	0.413		NA											15	115					0	0	0	0
ZNF438	220929	broad.mit.edu	37	10	31137576	31137576	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:31137576C>A	uc010qdz.1	-	7	2193	c.1758G>T	c.(1756-1758)CTG>CTT	p.L586L	ZNF438_uc001ivn.2_Silent_p.L537L|ZNF438_uc010qdy.1_Silent_p.L576L|ZNF438_uc001ivo.3_Silent_p.L150L|ZNF438_uc009xlg.2_Silent_p.L586L|ZNF438_uc001ivp.3_Silent_p.L576L|ZNF438_uc010qea.1_Silent_p.L586L|ZNF438_uc010qeb.1_Silent_p.L586L|ZNF438_uc010qec.1_Silent_p.L150L	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	586	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				GCACTTCTTTCAGATGGCCAA	0.478		NA											22	151					3.6e-14	3.97e-14	1	0
PCDH15	65217	broad.mit.edu	37	10	55566511	55566511	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:55566511G>A	uc010qhq.1	-	36	5272	c.4877C>T	c.(4876-4878)GCG>GTG	p.A1626V	PCDH15_uc010qhr.1_Missense_Mutation_p.A1621V	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGGCTTCACCGCTGTATTGTC	0.448		NA								HNSCC(58;0.16)			21	270					0	0	0	0
DNMBP	23268	broad.mit.edu	37	10	101715777	101715777	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:101715777G>C	uc001kqj.2	-	4	1546	c.1454C>G	c.(1453-1455)TCA>TGA	p.S485*	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	485					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		CCTTGAAGCTGAAACAGAAGA	0.463		NA											12	260					0	0	0	0
PDCD11	22984	broad.mit.edu	37	10	105172995	105172995	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:105172995G>A	uc001kwy.1	+	9	1188	c.1101G>A	c.(1099-1101)GTG>GTA	p.V367V		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	367	S1 motif 4.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		TTGGAGCAGTGCTGGATGATG	0.572		NA											16	137					0	0	0	0
KCNK18	338567	broad.mit.edu	37	10	118969745	118969745	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:118969745G>A	uc010qsr.1	+	3	1090	c.1090G>A	c.(1090-1092)GAC>AAC	p.D364N		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	364	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		CAGGCTGATTGACATATACAA	0.368		NA											10	210					0	0	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133950586	133950586	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:133950586G>A	uc001lkx.3	+	6	1180	c.1180G>A	c.(1180-1182)GAG>AAG	p.E394K		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AAGTCAGGATGAGAGAGAAGT	0.512		NA											13	84					0	0	0	0
STIM1	6786	broad.mit.edu	37	11	4112527	4112527	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:4112527C>T	uc001lyv.2	+	12	2125	c.1557C>T	c.(1555-1557)TCC>TCT	p.S519S	STIM1_uc009yef.2_Nonsense_Mutation_p.R532*|STIM1_uc009yeg.2_Silent_p.S346S	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	519	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		TGACCCATTCCGATTCGGAGT	0.463		NA											13	159					0	0	0	0
OR52R1	119695	broad.mit.edu	37	11	4825751	4825751	+	Missense_Mutation	SNP	G	G	C	rs112773148	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:4825751G>C	uc010qym.1	-	1	97	c.97C>G	c.(97-99)CTA>GTA	p.L33V		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	Error:Variant_position_missing_in_Q8NGF1_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTATAAACTAGAATAATTTCA	0.303		NA											9	100					0	0	0	0
OR52A4	390053	broad.mit.edu	37	11	5142588	5142588	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:5142588T>C	uc001lzz.1	-	1	221	c.221A>G	c.(220-222)GAC>GGC	p.D74G	OR52A4_uc001maa.2_RNA	NM_001005222	NP_001005222			olfactory receptor, family 52, subfamily A,											ovary(2)	2		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.7e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		AAGTGAAATGTCTGTGGCTCC	0.423		NA											9	67					0	0	0	0
OR51B6	390058	broad.mit.edu	37	11	5373628	5373628	+	Silent	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:5373628T>C	uc010qzb.1	+	1	891	c.891T>C	c.(889-891)ATT>ATC	p.I297I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTAAGCAGATTCAGAGTGGCA	0.423		NA											14	171					0	0	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530434	5530434	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:5530434G>C	uc001may.1	-	2	441	c.355C>G	c.(355-357)CAG>GAG	p.Q119E	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	119										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGCTTGGCTGAGGGAGTGAT	0.607		NA											6	78					0	0	0	0
CNGA4	1262	broad.mit.edu	37	11	6262839	6262839	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:6262839C>T	uc001mco.2	+	5	1203	c.1096C>T	c.(1096-1098)CCC>TCC	p.P366S	CNGA4_uc010raa.1_Missense_Mutation_p.P135S|CNGA4_uc001mcn.2_Missense_Mutation_p.P326S	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	366	cNMP.|Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAGCTGCAGCCCCAGACCTA	0.562		NA											24	215					0	0	0	0
ZNF214	7761	broad.mit.edu	37	11	7021140	7021140	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:7021140C>G	uc001mfa.2	-	3	2077	c.1774G>C	c.(1774-1776)GAT>CAT	p.D592H	ZNF214_uc010ray.1_Missense_Mutation_p.D592H|ZNF214_uc009yfh.1_Missense_Mutation_p.D592H	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	592					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		GAATTATGATCAAATCCCTTA	0.333		NA											8	69					0	0	0	0
NLRP14	338323	broad.mit.edu	37	11	7064475	7064475	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:7064475C>T	uc001mfb.1	+	4	1541	c.1218C>T	c.(1216-1218)AGC>AGT	p.S406S		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	406	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ATATTTCTAGCTTGTTCACAC	0.493		NA											20	199					0	0	0	0
ALX4	60529	broad.mit.edu	37	11	44286446	44286446	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:44286446C>T	uc001myb.2	-	4	1298	c.1194G>A	c.(1192-1194)ATG>ATA	p.M398I		NM_021926	NP_068745	Q9H161	ALX4_HUMAN	aristaless-like homeobox 4	398	OAR.				hair follicle development						0						CCTTGGCCTTCATGCGGAGGG	0.667		NA											9	70					0	0	0	0
SPRYD5	84767	broad.mit.edu	37	11	55652963	55652963	+	Missense_Mutation	SNP	A	A	G	rs2063276	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:55652963A>G	uc010rip.1	+	2	151	c.59A>G	c.(58-60)AAC>AGC	p.N20S	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	20	RING-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				ATCTGCATGAACTACTTCCTA	0.502		NA											7	138					0	0	0	0
GLYAT	10249	broad.mit.edu	37	11	58480325	58480325	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:58480325G>A	uc001nnb.2	-	4	379	c.224C>T	c.(223-225)ACT>ATT	p.T75I	GLYAT_uc001nnc.2_Missense_Mutation_p.T75I	NM_201648	NP_964011	Q6IB77	GLYAT_HUMAN	glycine-N-acyltransferase isoform a	75					acyl-CoA metabolic process|response to toxin|xenobiotic metabolic process	mitochondrial matrix	glycine N-acyltransferase activity|glycine N-benzoyltransferase activity				0		Breast(21;0.0044)|all_epithelial(135;0.0157)			Glycine(DB00145)	GATTTGGTAAGTATTGGTATA	0.318		NA											12	137					0	0	0	0
OR4D11	219986	broad.mit.edu	37	11	59271520	59271520	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:59271520G>A	uc001noa.1	+	1	472	c.472G>A	c.(472-474)GTG>ATG	p.V158M		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CCACTCCATCGTGCAGATCTC	0.547		NA											26	252					0	0	0	0
DAK	26007	broad.mit.edu	37	11	61106642	61106642	+	Missense_Mutation	SNP	G	G	A	rs112242971		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:61106642G>A	uc001nre.2	+	4	555	c.298G>A	c.(298-300)GGC>AGC	p.G100S	DDB1_uc010rlf.1_Intron|DAK_uc009ynm.1_Missense_Mutation_p.G30S	NM_015533	NP_056348	Q3LXA3	DHAK_HUMAN	dihydroxyacetone kinase 2	100	DhaK.				glycerol metabolic process	cytosol	ATP binding|FAD-AMP lyase (cyclizing) activity|glycerone kinase activity|metal ion binding				0						GGCCCAGGCCGGCACAGGTAA	0.672		NA											12	76					0	0	0	0
C11orf9	745	broad.mit.edu	37	11	61539102	61539102	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:61539102C>T	uc001nsc.1	+	6	967	c.871C>T	c.(871-873)CGA>TGA	p.R291*	C11orf9_uc001nse.1_Nonsense_Mutation_p.R282*	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	291	NDT80.|Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						GCACCCCACTCGAGCCCCATC	0.657		NA											18	189					0	0	0	0
DPP3	10072	broad.mit.edu	37	11	66276553	66276553	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:66276553C>G	uc001oig.1	+	18	2107	c.2045C>G	c.(2044-2046)TCA>TGA	p.S682*	DPP3_uc001oif.1_Nonsense_Mutation_p.S682*|DPP3_uc010rpe.1_Nonsense_Mutation_p.S671*|DPP3_uc001oih.1_Missense_Mutation_p.Q50E|BBS1_uc001oii.1_5'UTR|BBS1_uc010rpf.1_5'Flank|BBS1_uc010rpg.1_5'Flank|BBS1_uc001oij.1_5'Flank|BBS1_uc001oik.1_5'Flank|BBS1_uc001oil.1_5'Flank	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	682					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						TCCCCAGGCTCAGACGTGCAG	0.502		NA											13	156					0	0	0	0
RBM4	5936	broad.mit.edu	37	11	66411036	66411036	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:66411036G>A	uc009yrj.2	+	3	1016	c.528G>A	c.(526-528)CCG>CCA	p.P176P	RBM4_uc009yrk.2_Silent_p.P151P|RBM4_uc001oiw.1_Silent_p.P176P|RBM4_uc001oix.1_Intron|RBM4_uc010rpj.1_Intron|RBM4_uc001oiy.1_Silent_p.P176P|RBM4_uc001oiz.1_Silent_p.P176P	NM_002896	NP_002887	Q9BWF3	RBM4_HUMAN	RNA binding motif protein 4	176	CCHC-type.				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|negative regulation of translation in response to stress|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|positive regulation of muscle cell differentiation|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of nucleocytoplasmic transport|RNA splicing|stress-activated MAPK cascade	nuclear speck|nucleolus|stress granule	miRNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|zinc ion binding			ovary(1)	1				Lung(977;0.0112)|LUSC - Lung squamous cell carcinoma(976;0.0266)		AAGAGTGTCCGATAGATCGTT	0.572		NA											7	98					0	0	0	0
PITPNM1	9600	broad.mit.edu	37	11	67262398	67262398	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:67262398C>T	uc001olx.2	-	17	2850	c.2661G>A	c.(2659-2661)GCG>GCA	p.A887A	PITPNM1_uc001olw.2_Silent_p.A169A|PITPNM1_uc001oly.2_Silent_p.A887A|PITPNM1_uc001olz.2_Silent_p.A886A	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	887					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						CCTCGCATTCCGCCAGCTGTG	0.677		NA											12	132					0	0	0	0
TPCN2	219931	broad.mit.edu	37	11	68846367	68846367	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:68846367A>G	uc001oos.2	+	16	1534	c.1418A>G	c.(1417-1419)AAC>AGC	p.N473S	TPCN2_uc001oor.2_Missense_Mutation_p.N388S|TPCN2_uc010rqg.1_Missense_Mutation_p.N473S|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	473	Helical; Name=S2 of repeat II; (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CAGATTCTCAACTGCGTCTTC	0.597		NA											20	123					0	0	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249137	71249137	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:71249137C>T	uc001oqr.1	+	1	67	c.36C>T	c.(34-36)TCC>TCT	p.S12S		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	12						extracellular region|keratin filament	structural constituent of epidermis				0						GCTGTGGCTCCGGCTGTGGGG	0.647		NA											18	123					0	0	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715107	92715107	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:92715107C>T	uc001pdk.1	+	2	821	c.718C>T	c.(718-720)CTG>TTG	p.L240L		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	240	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	AGAGAGCAGGCTGTGCCTGAA	0.577		NA											7	105					0	0	0	0
GPR83	10888	broad.mit.edu	37	11	94113678	94113678	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:94113678G>C	uc001pet.2	-	4	1081	c.909C>G	c.(907-909)CTC>CTG	p.L303L		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	303	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GGAACCAGCAGAGGGCAAAGA	0.527		NA											9	110					0	0	0	0
PDGFD	80310	broad.mit.edu	37	11	103814225	103814225	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:103814225T>A	uc001phq.2	-	5	1099	c.727A>T	c.(727-729)ACC>TCC	p.T243S	PDGFD_uc001php.2_Missense_Mutation_p.T237S	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	243					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		TACCGAGGGGTGTCCAGATAC	0.403		NA											5	54					0	0	0	0
PDGFD	80310	broad.mit.edu	37	11	103814353	103814353	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:103814353A>G	uc001phq.2	-	5	971	c.599T>C	c.(598-600)GTA>GCA	p.V200A	PDGFD_uc001php.2_Missense_Mutation_p.V194A	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	200					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		GGGATCCGTTACTGATGGAGA	0.418		NA											5	43					0	0	0	0
KBTBD3	143879	broad.mit.edu	37	11	105924129	105924129	+	Silent	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:105924129A>G	uc001pja.2	-	4	1927	c.1287T>C	c.(1285-1287)CCT>CCC	p.P429P	KBTBD3_uc001pjb.2_Silent_p.P429P|KBTBD3_uc009yxm.2_Silent_p.P350P	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	425	Kelch 3.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		CTTTGGAAAGAGGATTGTAAG	0.383		NA											14	97					0	0	0	0
AASDHPPT	60496	broad.mit.edu	37	11	105962080	105962080	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:105962080G>A	uc001pjc.1	+	4	715	c.569G>A	c.(568-570)GGA>GAA	p.G190E	AASDHPPT_uc010rvn.1_RNA|AASDHPPT_uc001pjd.1_Missense_Mutation_p.G43E	NM_015423	NP_056238	Q9NRN7	ADPPT_HUMAN	aminoadipate-semialdehyde	190					macromolecule biosynthetic process|pantothenate metabolic process	cytosol	holo-[acyl-carrier-protein] synthase activity|magnesium ion binding|protein binding				0		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.78e-05)|Epithelial(105;0.00622)|all cancers(92;0.041)		ATTGGTGTTGGACTAGGATTT	0.353		NA											18	202					0	0	0	0
EXPH5	23086	broad.mit.edu	37	11	108384641	108384641	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:108384641T>A	uc001pkk.2	-	6	1704	c.1593A>T	c.(1591-1593)GAA>GAT	p.E531D	EXPH5_uc010rvy.1_Missense_Mutation_p.E343D|EXPH5_uc010rvz.1_Missense_Mutation_p.E375D|EXPH5_uc010rwa.1_Missense_Mutation_p.E455D	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	531					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AAGAAAATGATTCCCAGTGTT	0.413		NA											9	133					0	0	0	0
SIK3	23387	broad.mit.edu	37	11	116730111	116730111	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:116730111G>A	uc001ppy.2	-	19	2353	c.2317C>T	c.(2317-2319)CGC>TGC	p.R773C	SIK3_uc001ppz.2_Missense_Mutation_p.R672C|SIK3_uc001pqa.2_Missense_Mutation_p.R773C|SIK3_uc001ppw.2_Missense_Mutation_p.R190C|SIK3_uc001ppx.2_Missense_Mutation_p.R211C|SIK3_uc001pqb.2_Missense_Mutation_p.R76C	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	773	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity	p.L773F(1)		ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GAGATGCCGCGCCCACTGGAG	0.597		NA									OREG0003491	type=REGULATORY REGION|Gene=AK022302|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	77					0	0	0	0
MLL	4297	broad.mit.edu	37	11	118352585	118352585	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:118352585C>T	uc001pta.2	+	7	3813	c.3790C>T	c.(3790-3792)CGA>TGA	p.R1264*	MLL_uc001ptb.2_Nonsense_Mutation_p.R1264*|MLL_uc001pte.1_RNA|MLL_uc009zab.1_Translation_Start_Site	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1264					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GCCTCCTCCACGAAAGCCCGT	0.542		NA	T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								9	87					0	0	0	0
TTC36	143941	broad.mit.edu	37	11	118398294	118398294	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:118398294G>A	uc001ptg.1	+	1	85	c.85G>A	c.(85-87)GGA>AGA	p.G29R	TTC36_uc010ryb.1_RNA|TTC36_uc010ryc.1_5'UTR	NM_001080441	NP_001073910	A6NLP5	TTC36_HUMAN	tetratricopeptide repeat domain 36	29							binding				0						ATTGGACCTCGGAGAGGAAGC	0.537		NA											24	291					0	0	0	0
CCDC77	84318	broad.mit.edu	37	12	551063	551063	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:551063G>C	uc001qig.2	+	13	1624	c.1444G>C	c.(1444-1446)GAG>CAG	p.E482Q	CCDC77_uc009zdk.2_Missense_Mutation_p.E450Q|CCDC77_uc010sdp.1_Missense_Mutation_p.E450Q|CCDC77_uc010sdq.1_Missense_Mutation_p.E450Q	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	482	Potential.					centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			GTTTGGTCTGGAGAATGAACT	0.458		NA											16	295					0	0	0	0
LAG3	3902	broad.mit.edu	37	12	6886563	6886563	+	Nonsense_Mutation	SNP	G	G	A	rs61731925		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:6886563G>A	uc001qqt.3	+	6	1540	c.1191G>A	c.(1189-1191)TGG>TGA	p.W397*	LAG3_uc001qqu.2_Nonsense_Mutation_p.W227*	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	397	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane	antigen binding|MHC class II protein binding				0						CAGGACCTTGGCTGGAGGCAC	0.572		NA											16	167					0	0	0	0
PRH2	5555	broad.mit.edu	37	12	11083308	11083308	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:11083308C>A	uc009zhr.2	+	3	186	c.148C>A	c.(148-150)CCT>ACT	p.P50T	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH2_uc001qzh.2_Missense_Mutation_p.P50T|PRH2_uc001qzi.3_Missense_Mutation_p.P50T	NM_001110213	NP_001103683	P02810	PRPC_HUMAN	proline-rich protein HaeIII subfamily 2	50						extracellular space	protein binding				0						TCAGGGACCACCTTTGGGAGG	0.547		NA											20	232					5.04e-11	5.49e-11	1	0
TAS2R46	259292	broad.mit.edu	37	12	11214111	11214111	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:11214111G>A	uc001qzp.1	-	1	783	c.783C>T	c.(781-783)TTC>TTT	p.F261F	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176887	NP_795368	P59540	T2R46_HUMAN	taste receptor, type 2, member 46	261	Helical; Name=7; (Potential).				sensory perception of taste	cilium membrane|integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0344)	BRCA - Breast invasive adenocarcinoma(232;0.196)		CGCAGAACATGAAGACAGGTT	0.408		NA											34	285					0	0	0	0
TAS2R46	259292	broad.mit.edu	37	12	11214216	11214216	+	Missense_Mutation	SNP	T	T	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:11214216T>G	uc001qzp.1	-	1	678	c.678A>C	c.(676-678)AAA>AAC	p.K226N	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176887	NP_795368	P59540	T2R46_HUMAN	taste receptor, type 2, member 46	226	Cytoplasmic (Potential).				sensory perception of taste	cilium membrane|integral to membrane	G-protein coupled receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.0344)	BRCA - Breast invasive adenocarcinoma(232;0.196)		TTTGCAAAGCTTTTATGTGGA	0.403		NA											23	303					0	0	0	0
LRP6	4040	broad.mit.edu	37	12	12274078	12274078	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:12274078G>A	uc001rah.3	-	23	4966	c.4824C>T	c.(4822-4824)CCC>CCT	p.P1608P	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Silent_p.P1563P	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1608	Cytoplasmic (Potential).|PPPSP motif E.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				AGTCTGTACAGGGAGAGGGTG	0.527		NA											5	54					0	0	0	0
KRAS	3845	broad.mit.edu	37	12	25368473	25368473	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:25368473T>C	uc001rgp.1	-	5	653	c.472A>G	c.(472-474)ACA>GCA	p.T158A	KRAS_uc001rgq.1_Intron	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	158					activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CTCACCAATGTATAAAAAGCA	0.353		119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			10	128					0	0	0	0
KIF21A	55605	broad.mit.edu	37	12	39735313	39735313	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:39735313C>G	uc001rly.2	-	14	2061	c.1915G>C	c.(1915-1917)GAA>CAA	p.E639Q	KIF21A_uc001rlw.2_5'Flank|KIF21A_uc001rlx.2_Missense_Mutation_p.E626Q|KIF21A_uc001rlz.2_Missense_Mutation_p.E626Q|KIF21A_uc010skl.1_Missense_Mutation_p.E626Q	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	639					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				GTACCTTTTTCATCTGATTCA	0.289		NA											7	104					0	0	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46322292	46322292	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:46322292C>G	uc001rox.2	-	11	1479	c.1192G>C	c.(1192-1194)GAA>CAA	p.E398Q	SFRS2IP_uc001row.2_Missense_Mutation_p.E83Q|SFRS2IP_uc001roy.1_Missense_Mutation_p.E472Q	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	398					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GATGATTTTTCAGGGGCAGCT	0.408		NA											26	194					0	0	0	0
CCDC65	85478	broad.mit.edu	37	12	49312494	49312494	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:49312494G>C	uc001rso.2	+	6	1061	c.834G>C	c.(832-834)AAG>AAC	p.K278N		NM_033124	NP_149115	Q8IXS2	CCD65_HUMAN	coiled-coil domain containing 65	278										ovary(1)|skin(1)	2						CAAAAGGCAAGATCATGATAC	0.433		NA											8	70					0	0	0	0
LASS5	91012	broad.mit.edu	37	12	50536932	50536932	+	Missense_Mutation	SNP	C	C	T	rs146511812		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:50536932C>T	uc001rwd.3	-	3	376	c.359G>A	c.(358-360)CGA>CAA	p.R120Q	LASS5_uc001rwc.2_Missense_Mutation_p.R39Q|LASS5_uc001rwe.3_Missense_Mutation_p.R61Q|LASS5_uc001rwf.3_RNA|LASS5_uc010smq.1_5'UTR	NM_147190	NP_671723	Q8N5B7	CERS5_HUMAN	LAG1 homolog, ceramide synthase 5	120	Cytoplasmic (Potential).|Homeobox.				ceramide biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0						TTGGATTTTTCGGACATTCCA	0.493		NA											38	428					0	0	0	0
KRT75	9119	broad.mit.edu	37	12	52824378	52824378	+	Missense_Mutation	SNP	C	C	T	rs143629874		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:52824378C>T	uc001saj.2	-	5	1004	c.982G>A	c.(982-984)GAG>AAG	p.E328K		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	328	Coil 2.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GCAATGTCCTCGTATTGTGCT	0.572		NA											15	275					0	0	0	0
KRT4	3851	broad.mit.edu	37	12	53200995	53200995	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:53200995C>T	uc001saz.2	-	9	1914	c.1643G>A	c.(1642-1644)GGA>GAA	p.G548E		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	474						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						TCCTAATCCTCCGCTGATGCC	0.577		NA											7	63					0	0	0	0
HOXC13	3229	broad.mit.edu	37	12	54338828	54338828	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:54338828C>T	uc001sei.2	+	2	896	c.781C>T	c.(781-783)CGC>TGC	p.R261C	HOXC13_uc010sop.1_RNA	NM_017410	NP_059106	P31276	HXC13_HUMAN	homeobox C13	261	Homeobox.					nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CCGGCGCGGGCGCAAGAAACG	0.602		NA	T	NUP98	AML								21	197					0	0	0	0
NFE2	4778	broad.mit.edu	37	12	54686499	54686499	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:54686499C>T	uc009znk.2	-	2	1291	c.781G>A	c.(781-783)GAG>AAG	p.E261K	NFE2_uc001sfq.2_Missense_Mutation_p.E261K|NFE2_uc001sfr.3_Missense_Mutation_p.E261K|NFE2_uc009znl.2_Missense_Mutation_p.E261K	NM_006163	NP_006154	Q16621	NFE2_HUMAN	nuclear factor, erythroid derived 2 isoform 1	261					blood circulation|blood coagulation|multicellular organismal development|nucleosome disassembly|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	actin cytoskeleton|cytoplasm|PML body	protein dimerization activity|protein N-terminus binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|WW domain binding				0						AGCTGGCTCTCTGTCAGCGGG	0.542		NA											15	82					0	0	0	0
COPZ1	22818	broad.mit.edu	37	12	54741612	54741612	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:54741612G>A	uc001sfs.1	+	6	416	c.379G>A	c.(379-381)GAA>AAA	p.E127K	COPZ1_uc001sft.2_Missense_Mutation_p.E76K|COPZ1_uc009znm.1_Missense_Mutation_p.E135K|COPZ1_uc010sot.1_Missense_Mutation_p.E104K	NM_016057	NP_057141	P61923	COPZ1_HUMAN	coatomer protein complex, subunit zeta 1	127					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol					0						GGCTGTGGATGAAATTGTAGA	0.502		NA											8	63					0	0	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54894338	54894338	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:54894338C>T	uc001sgc.3	+	3	314	c.235C>T	c.(235-237)CGT>TGT	p.R79C	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.R29C	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	79					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						ACCAGTACATCGTGAAAAAGC	0.378		NA											12	223					0	0	0	0
BAZ2A	11176	broad.mit.edu	37	12	57005681	57005681	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:57005681G>A	uc001slq.1	-	6	1685	c.1491C>T	c.(1489-1491)CCC>CCT	p.P497P	BAZ2A_uc001slp.1_Silent_p.P495P|BAZ2A_uc009zow.1_Silent_p.P465P	NM_013449	NP_038477	Q9UIF9	BAZ2A_HUMAN	bromodomain adjacent to zinc finger domain, 2A	497					chromatin silencing at rDNA|DNA methylation|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	DNA binding|histone acetyl-lysine binding|ligand-dependent nuclear receptor binding|RNA binding|zinc ion binding				0						GGGAAGTTACGGGAGAGGCTT	0.542		NA											4	24					0	0	0	0
RDH16	8608	broad.mit.edu	37	12	57348692	57348692	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:57348692G>A	uc001smi.3	-	2	742	c.570C>T	c.(568-570)CTC>CTT	p.L190L	RDH16_uc009zpa.2_Intron	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	190	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						ACCCATACCTGAGGGAGTCAG	0.567		NA											6	70					0	0	0	0
CAND1	55832	broad.mit.edu	37	12	67699281	67699281	+	Silent	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:67699281A>G	uc001stn.2	+	10	2270	c.1833A>G	c.(1831-1833)ACA>ACG	p.T611T	CAND1_uc001sto.2_Intron	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	611	HEAT 14.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		TGCCTAATACACTTCAGATTT	0.393		NA											16	323					0	0	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373610	86373610	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:86373610C>G	uc001tai.3	-	8	2144	c.894G>C	c.(892-894)CAG>CAC	p.Q298H	MGAT4C_uc001tal.3_Missense_Mutation_p.Q298H|MGAT4C_uc001taj.3_Missense_Mutation_p.Q298H|MGAT4C_uc001tak.3_Missense_Mutation_p.Q298H|MGAT4C_uc010sum.1_Missense_Mutation_p.Q322H|MGAT4C_uc001tah.3_Missense_Mutation_p.Q298H	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	298	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TCACATTTTTCTGAGCCAACA	0.383		NA											13	128					0	0	0	0
ELK3	2004	broad.mit.edu	37	12	96641121	96641121	+	Missense_Mutation	SNP	C	C	T	rs118124881	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:96641121C>T	uc001teo.1	+	3	890	c.611C>T	c.(610-612)ACG>ATG	p.T204M		NM_005230	NP_005221	P41970	ELK3_HUMAN	ELK3 protein	204					negative regulation of transcription, DNA-dependent|signal transduction	mitochondrion	protein binding|purine-rich negative regulatory element binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	all_cancers(2;0.00173)					CTGCCTTCCACGTCAGAGGCT	0.587		NA											20	118					0	0	0	0
NEDD1	121441	broad.mit.edu	37	12	97345732	97345732	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:97345732A>T	uc001teu.3	+	16	2223	c.1884A>T	c.(1882-1884)GAA>GAT	p.E628D	NEDD1_uc001tev.3_Missense_Mutation_p.E628D|NEDD1_uc010svc.1_Missense_Mutation_p.E539D|NEDD1_uc001tew.2_Missense_Mutation_p.E635D|NEDD1_uc001tex.2_Missense_Mutation_p.E539D	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	628					cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						TCTAGAATGAAATGCATTCTT	0.323		NA											9	93					0	0	0	0
NUAK1	9891	broad.mit.edu	37	12	106464625	106464625	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:106464625G>A	uc001tlj.1	-	6	2139	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	253	Protein kinase.						ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						CGAAACCATCGAAGGGCATTG	0.547		NA											10	98					0	0	0	0
TPCN1	53373	broad.mit.edu	37	12	113704019	113704019	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:113704019C>T	uc001tuw.2	+	4	569	c.272C>T	c.(271-273)CCC>CTC	p.P91L	TPCN1_uc001tux.2_Missense_Mutation_p.P163L|TPCN1_uc010syt.1_Missense_Mutation_p.P23L	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	91	Cytoplasmic (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						TTCACCCACCCCAAGGATGCC	0.582		NA											35	381					0	0	0	0
TPCN1	53373	broad.mit.edu	37	12	113714796	113714796	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:113714796C>T	uc001tuw.2	+	11	1312	c.1015C>T	c.(1015-1017)CGA>TGA	p.R339*	TPCN1_uc001tux.2_Nonsense_Mutation_p.R411*|TPCN1_uc010syt.1_Nonsense_Mutation_p.R271*	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	339	Cytoplasmic (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						ACTGCACAAGCGAACCGCTAT	0.567		NA											44	373					0	0	0	0
CIT	11113	broad.mit.edu	37	12	120150457	120150457	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:120150457G>A	uc001txi.1	-	35	4550	c.4497C>T	c.(4495-4497)GAC>GAT	p.D1499D	CIT_uc001txh.1_Silent_p.D1018D|CIT_uc001txj.1_Silent_p.D1541D	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1499	PH.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		ATACATCCCCGTCGGGAAGGC	0.458		NA											10	88					0	0	0	0
SBNO1	55206	broad.mit.edu	37	12	123832576	123832576	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:123832576C>A	uc010tap.1	-	2	237	c.237G>T	c.(235-237)AGG>AGT	p.R79S	SBNO1_uc010tao.1_Missense_Mutation_p.R79S|SBNO1_uc010taq.1_5'UTR|SBNO1_uc001uet.2_Missense_Mutation_p.R79S|SBNO1_uc001ueu.2_Missense_Mutation_p.R79S|SBNO1_uc001uev.2_Intron|SBNO1_uc009zxy.1_Intron	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	79							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		TCATTCTTACCCTCACATTTA	0.313		NA											9	114					1.77e-08	1.9e-08	1	0
DHX37	57647	broad.mit.edu	37	12	125449066	125449066	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:125449066T>A	uc001ugy.2	-	15	2018	c.1919A>T	c.(1918-1920)AAG>ATG	p.K640M		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	640	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		TTTCTTGACCTTCCCACAGTC	0.607		NA											9	121					0	0	0	0
SLC7A1	6541	broad.mit.edu	37	13	30104749	30104749	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:30104749C>T	uc001uso.2	-	5	1017	c.630G>A	c.(628-630)GTG>GTA	p.V210V		NM_003045	NP_003036	P30825	CTR1_HUMAN	solute carrier family 7 (cationic amino acid	210	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	receptor activity				0		Lung SC(185;0.0257)|Breast(139;0.238)		all cancers(112;0.0148)|OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(112;0.0875)|GBM - Glioblastoma multiforme(144;0.179)	L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CCGATCCTTTCACAAATCCTG	0.443		NA											19	215					0	0	0	0
B3GALTL	145173	broad.mit.edu	37	13	31822041	31822041	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:31822041G>A	uc010aaz.2	+	6	507	c.397G>A	c.(397-399)GAA>AAA	p.E133K		NM_194318	NP_919299	Q6Y288	B3GLT_HUMAN	beta 1,3-galactosyltransferase-like	133	Lumenal (Potential).				fucose metabolic process	endoplasmic reticulum membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2		Lung SC(185;0.0257)		all cancers(112;0.00436)|Epithelial(112;0.0285)|OV - Ovarian serous cystadenocarcinoma(117;0.0512)|GBM - Glioblastoma multiforme(144;0.184)		CTTCTGTGAAGAAGAGACAAG	0.333		NA											12	100					0	0	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33017343	33017343	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:33017343A>G	uc010abe.1	-	7	1353	c.1331T>C	c.(1330-1332)ATA>ACA	p.I444T	N4BP2L2_uc001uug.2_Missense_Mutation_p.I327T|N4BP2L2_uc010abd.1_Missense_Mutation_p.I357T|N4BP2L2_uc001uuh.2_Missense_Mutation_p.I275T|N4BP2L2_uc001uuj.2_Intron|N4BP2L2_uc010tdz.1_Missense_Mutation_p.I429T	NM_033111	NP_149102	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		TTCATTTCCTATCAGTAGTTT	0.418		NA											13	104					0	0	0	0
LPAR6	10161	broad.mit.edu	37	13	48985612	48985612	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:48985612G>C	uc010acu.2	-	1	2042	c.948C>G	c.(946-948)TTC>TTG	p.F316L	RB1_uc001vcb.2_Intron|LPAR6_uc001vcc.1_Intron|LPAR6_uc001vce.2_Missense_Mutation_p.F316L|LPAR6_uc001vcf.2_Missense_Mutation_p.F316L	NM_001162498	NP_001155970	P43657	LPAR6_HUMAN	G-protein coupled purinergic receptor P2Y5	316	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled	p.?(4)		ovary(4)	4						GAACTTCAGAGAATCTGAAGT	0.338		NA											15	158					0	0	0	0
PCDH17	27253	broad.mit.edu	37	13	58299367	58299367	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:58299367G>C	uc001vhq.1	+	4	4311	c.3419G>C	c.(3418-3420)AGA>ACA	p.R1140T	PCDH17_uc010aec.1_Missense_Mutation_p.R1139T|PCDH17_uc001vhr.1_Missense_Mutation_p.R229T	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1140	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GAAGTTGTGAGAGAAATTGAT	0.488		NA											28	328					0	0	0	0
DIAPH3	81624	broad.mit.edu	37	13	60686226	60686226	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:60686226G>A	uc001vht.2	-	3	527	c.308C>T	c.(307-309)TCA>TTA	p.S103L	DIAPH3_uc001vhw.1_Missense_Mutation_p.S92L|DIAPH3_uc010aed.1_Missense_Mutation_p.S92L|DIAPH3_uc010aee.1_Intron	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	103					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		AGGTGCTGCTGAGCAATCACT	0.408		NA											32	380					0	0	0	0
KLF5	688	broad.mit.edu	37	13	73636025	73636025	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:73636025G>C	uc001vje.2	+	2	612	c.288G>C	c.(286-288)CTG>CTC	p.L96L	KLF5_uc001vjd.2_Silent_p.L5L	NM_001730	NP_001721	Q13887	KLF5_HUMAN	Kruppel-like factor 5	96					transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|pancreas(1)	3		Prostate(6;0.00187)|Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.0011)		AGAAGTATCTGACACCTCAGC	0.428		NA											23	220					0	0	0	0
FAM155A	728215	broad.mit.edu	37	13	108518310	108518310	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:108518310G>T	uc001vql.2	-	1	1151	c.635C>A	c.(634-636)CCC>CAC	p.P212H		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	212						integral to membrane	binding			skin(1)	1						GAGCGGAGTGGGATGCTTGCT	0.587		NA											11	206					0.000673444	0.00069413	1	0
LIG4	3981	broad.mit.edu	37	13	108861664	108861664	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:108861664G>A	uc001vqn.2	-	2	2226	c.1953C>T	c.(1951-1953)AAC>AAT	p.N651N	LIG4_uc001vqo.2_Silent_p.N651N|LIG4_uc010agg.1_Silent_p.N584N|LIG4_uc010agf.2_Silent_p.N651N|LIG4_uc001vqp.2_Silent_p.N651N	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	651					cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					TTTTGTTAACGTTAGTAAGGT	0.373		NA						NHEJ					12	148					0	0	0	0
ANKRD10	55608	broad.mit.edu	37	13	111563113	111563113	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:111563113T>C	uc001vrn.2	-	2	350	c.215A>G	c.(214-216)GAG>GGG	p.E72G	ANKRD10_uc001vro.1_Missense_Mutation_p.E72G|ANKRD10_uc001vrp.1_Missense_Mutation_p.E72G	NM_017664	NP_060134	Q9NXR5	ANR10_HUMAN	ankyrin repeat domain 10	72	ANK 2.									central_nervous_system(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		all cancers(43;0.0882)|BRCA - Breast invasive adenocarcinoma(86;0.188)|Lung(89;0.208)			CACTAAGCACTCCAACTTCGA	0.478		NA											4	48					0	0	0	0
DCUN1D2	55208	broad.mit.edu	37	13	114115389	114115389	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:114115389G>A	uc001vtr.1	-	5	622	c.583C>T	c.(583-585)CTC>TTC	p.L195F	DCUN1D2_uc001vts.1_RNA|DCUN1D2_uc010agw.1_Missense_Mutation_p.L62F	NM_001014283	NP_001014305	Q6PH85	DCNL2_HUMAN	DCN1, defective in cullin neddylation 1, domain	195	DCUN1.										0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.029)|GBM - Glioblastoma multiforme(44;0.234)			GTGTTCCAGAGATCTAAAAAT	0.418		NA											8	59					0	0	0	0
ZNF828	283489	broad.mit.edu	37	13	115089332	115089332	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:115089332G>A	uc010ahb.2	+	3	344	c.15G>A	c.(13-15)CAG>CAA	p.Q5Q	ZNF828_uc001vuv.2_Silent_p.Q5Q|ZNF828_uc010tko.1_Silent_p.Q5Q	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	5					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AAGCATTCCAGGAACTTCGTA	0.378		NA											13	156					0	0	0	0
NGDN	25983	broad.mit.edu	37	14	23945268	23945268	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:23945268G>A	uc001wjy.2	+	7	478	c.451G>A	c.(451-453)GCA>ACA	p.A151T	NGDN_uc001wjz.2_Missense_Mutation_p.A151T|NGDN_uc001wka.2_5'Flank	NM_001042635	NP_001036100	Q8NEJ9	NGDN_HUMAN	neuroguidin isoform 1	151	Necessary for interaction with EIF4E (By similarity).				regulation of translation	axon|cytoplasm|dendrite|filopodium|nucleus					0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00654)		GGAAGATGAAGCAGAAGATGA	0.413		NA											10	120					0	0	0	0
CMA1	1215	broad.mit.edu	37	14	24975727	24975727	+	Missense_Mutation	SNP	C	C	T	rs13306252	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:24975727C>T	uc001wpp.1	-	3	323	c.293G>A	c.(292-294)CGT>CAT	p.R98H	CMA1_uc010alx.1_5'UTR	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	98	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		TTTTGGATGACGGAATTGCTT	0.423		NA											23	189					0	0	0	0
ARHGAP5	394	broad.mit.edu	37	14	32562761	32562761	+	Missense_Mutation	SNP	A	A	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:32562761A>C	uc001wrl.2	+	2	3125	c.2886A>C	c.(2884-2886)GAA>GAC	p.E962D	ARHGAP5_uc001wrm.2_Missense_Mutation_p.E962D|ARHGAP5_uc001wrn.2_Missense_Mutation_p.E962D|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	962					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		ATCAAAGTGAAGATGTTTTTC	0.358		NA											20	137					0	0	0	0
AKAP6	9472	broad.mit.edu	37	14	33292499	33292499	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:33292499G>A	uc001wrq.2	+	13	5650	c.5480G>A	c.(5479-5481)GGC>GAC	p.G1827D		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1827					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GAGATGAAGGGCAGTAAAGAT	0.383		NA											7	131					0	0	0	0
CTAGE5	4253	broad.mit.edu	37	14	39782616	39782616	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:39782616C>A	uc001wvg.3	+	14	1602	c.1266C>A	c.(1264-1266)AGC>AGA	p.S422R	CTAGE5_uc010tqe.1_Missense_Mutation_p.S384R|CTAGE5_uc001wuz.3_Missense_Mutation_p.S410R|CTAGE5_uc001wuy.3_Missense_Mutation_p.S342R|CTAGE5_uc001wvb.3_Missense_Mutation_p.S393R|CTAGE5_uc001wvc.3_Missense_Mutation_p.S367R|CTAGE5_uc001wva.3_Missense_Mutation_p.S393R|CTAGE5_uc001wvh.3_Missense_Mutation_p.S422R|CTAGE5_uc001wvf.3_Missense_Mutation_p.S347R|CTAGE5_uc001wvi.3_Missense_Mutation_p.S427R|CTAGE5_uc010amz.2_Missense_Mutation_p.S38R|CTAGE5_uc001wvj.3_Missense_Mutation_p.S393R	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	422	Potential.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		AAAAGATCAGCCATGCCACTG	0.308		NA											10	108					4.69e-08	5e-08	1	0
RPL10L	140801	broad.mit.edu	37	14	47120636	47120636	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:47120636T>C	uc001wwg.2	-	1	393	c.304A>G	c.(304-306)ATG>GTG	p.M102V		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	102					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						CAGGACAACATCTTGTTGATG	0.527		NA											13	95					0	0	0	0
ARF6	382	broad.mit.edu	37	14	50360887	50360887	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:50360887C>G	uc001wxg.3	+	2	1054	c.433C>G	c.(433-435)CGG>GGG	p.R145G		NM_001663	NP_001654	P62330	ARF6_HUMAN	ADP-ribosylation factor 6	145					cell adhesion|cellular component movement|cortical actin cytoskeleton organization|negative regulation of receptor-mediated endocytosis|positive regulation of actin filament polymerization|positive regulation of establishment of protein localization in plasma membrane|protein localization at cell surface|protein transport|regulation of dendritic spine development|regulation of filopodium assembly|regulation of Rac protein signal transduction|ruffle organization|small GTPase mediated signal transduction|vesicle-mediated transport	cell cortex|endosome membrane|filopodium membrane|Golgi apparatus|membrane fraction|ruffle	GTP binding|GTPase activity|thioesterase binding				0	all_epithelial(31;0.000822)|Breast(41;0.0117)					GACCCGGATTCGGGACAGGAA	0.552		NA											8	62					0	0	0	0
WDHD1	11169	broad.mit.edu	37	14	55453969	55453969	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:55453969G>A	uc001xbm.1	-	14	1741	c.1663C>T	c.(1663-1665)CGA>TGA	p.R555*	WDHD1_uc010aom.1_Nonsense_Mutation_p.R72*|WDHD1_uc001xbn.1_Nonsense_Mutation_p.R432*	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	555						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						GTAAACAATCGAAGAAGCAGG	0.458		NA											8	96					0	0	0	0
C14orf101	54916	broad.mit.edu	37	14	57092099	57092099	+	Splice_Site	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:57092099G>C	uc001xcm.2	+	12	1521	c.1399_splice	c.e12-1	p.M467_splice	C14orf101_uc001xcj.2_Splice_Site|C14orf101_uc001xcl.1_Splice_Site|C14orf101_uc001xcn.2_Splice_Site|C14orf101_uc010trf.1_Splice_Site|C14orf101_uc001xco.2_Splice_Site	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916							integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		TTTTCTGGCAGATGATGACTT	0.323		NA											8	150					0	0	0	0
MNAT1	4331	broad.mit.edu	37	14	61201668	61201668	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:61201668C>T	uc001xfd.2	+	1	199	c.88C>T	c.(88-90)CTC>TTC	p.L30F	MNAT1_uc010apq.1_Missense_Mutation_p.L30F|MNAT1_uc001xfe.2_Missense_Mutation_p.L30F	NM_002431	NP_002422	P51948	MAT1_HUMAN	menage a trois 1 (CAK assembly factor)	30	RING-type.				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein complex assembly|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	cytoplasm|holo TFIIH complex	protein N-terminus binding|zinc ion binding			ovary(1)|lung(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.0174)		CGGACACACTCTGTGAGTTGG	0.602		NA						Direct_reversal_of_damage|NER					6	76					0	0	0	0
KCNH5	27133	broad.mit.edu	37	14	63174448	63174448	+	Silent	SNP	G	G	A	rs138093802		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:63174448G>A	uc001xfx.2	-	11	2796	c.2745C>T	c.(2743-2745)CAC>CAT	p.H915H	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	915	CAD (involved in subunit assembly) (By similarity).|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CTTTGAGTTCGTGTTTGACTT	0.512		NA											27	294					0	0	0	0
KCNH5	27133	broad.mit.edu	37	14	63174587	63174587	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:63174587G>T	uc001xfx.2	-	11	2657	c.2606C>A	c.(2605-2607)ACA>AAA	p.T869K	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	869	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GTCACTTTTTGTAATTCCACT	0.498		NA											14	188					1.05e-09	1.14e-09	1	0
ZFYVE26	23503	broad.mit.edu	37	14	68274151	68274151	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:68274151T>C	uc001xka.2	-	5	989	c.850A>G	c.(850-852)ACA>GCA	p.T284A	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.T284A|ZFYVE26_uc010tta.1_Missense_Mutation_p.T284A	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	284					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		GGCTTTTCTGTGACCTTCTCT	0.597		NA											9	48					0	0	0	0
PCNX	22990	broad.mit.edu	37	14	71444229	71444229	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:71444229A>T	uc001xmo.2	+	6	1621	c.1175A>T	c.(1174-1176)GAC>GTC	p.D392V	PCNX_uc001xmn.3_Missense_Mutation_p.D392V|PCNX_uc010are.1_Missense_Mutation_p.D392V	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	392						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		ACGGACCGGGACACTAACAGT	0.498		NA											10	109					0	0	0	0
FAM161B	145483	broad.mit.edu	37	14	74411111	74411111	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:74411111C>G	uc001xpd.1	-	3	958	c.852G>C	c.(850-852)AAG>AAC	p.K284N		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						GCTTGGAGATCTTGGCTTCAG	0.542		NA											17	201					0	0	0	0
FAM161B	145483	broad.mit.edu	37	14	74411195	74411195	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:74411195C>T	uc001xpd.1	-	3	874	c.768G>A	c.(766-768)TTG>TTA	p.L256L		NM_152445	NP_689658			hypothetical protein LOC145483											ovary(1)	1						TGAAGGGCTTCAAAGAAGAGA	0.562		NA											8	128					0	0	0	0
TSHR	7253	broad.mit.edu	37	14	81610460	81610460	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:81610460G>A	uc001xvd.1	+	10	2214	c.2058G>A	c.(2056-2058)CAG>CAA	p.Q686Q		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	686	Cytoplasmic (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	AGGCCTTCCAGAGGGATGTGT	0.478		NA	Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						28	228					0	0	0	0
TTC7B	145567	broad.mit.edu	37	14	91044465	91044465	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:91044465C>G	uc001xyp.2	-	19	2417	c.2295G>C	c.(2293-2295)AAG>AAC	p.K765N	TTC7B_uc001xyo.2_Missense_Mutation_p.K209N|TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	765	TPR 10.						binding			ovary(2)	2		Melanoma(154;0.222)				GCTGCATGCTCTTCACGTGGG	0.647		NA											4	16					0	0	0	0
PRIMA1	145270	broad.mit.edu	37	14	94187823	94187823	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:94187823G>A	uc001ybw.1	-	5	471	c.429C>T	c.(427-429)AAC>AAT	p.N143N	PRIMA1_uc001ybx.1_RNA	NM_178013	NP_821092	Q86XR5	PRIMA_HUMAN	proline rich membrane anchor 1 precursor	143	Cytoplasmic (Potential).				neurotransmitter catabolic process	cell junction|integral to membrane|synapse				large_intestine(1)|skin(1)	2		all_cancers(154;0.127)		Epithelial(152;0.138)|COAD - Colon adenocarcinoma(157;0.229)		CTACTCCTTTGTTGCTCTGCG	0.572		NA											5	75					0	0	0	0
CLMN	79789	broad.mit.edu	37	14	95670573	95670573	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:95670573C>T	uc001yef.2	-	9	1229	c.1113G>A	c.(1111-1113)GCG>GCA	p.A371A		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	371						integral to membrane	actin binding				0				Epithelial(152;0.193)		TGTCTGACAGCGCATGGCTGG	0.542		NA											19	140					0	0	0	0
ATP10A	57194	broad.mit.edu	37	15	25925395	25925395	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:25925395T>A	uc010ayu.2	-	20	3845	c.3739A>T	c.(3739-3741)ATT>TTT	p.I1247F		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1247	Helical; (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GCATTGTAAATCAAAGCCACG	0.478		NA											14	141					0	0	0	0
C15orf55	256646	broad.mit.edu	37	15	34648388	34648388	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:34648388C>G	uc001zif.2	+	7	2250	c.2095C>G	c.(2095-2097)CAG>GAG	p.Q699E	C15orf55_uc010ucc.1_Missense_Mutation_p.Q727E|C15orf55_uc010ucd.1_Missense_Mutation_p.Q717E	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	699						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CCCCATGGCTCAGAGTTATGA	0.572		NA	T	BRD3|BRD4	lethal midline carcinoma								6	82					0	0	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42104154	42104154	+	Splice_Site	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:42104154G>A	uc001zok.3	+	6	614	c.328_splice	c.e6-1	p.S110_splice	MAPKBP1_uc001zoj.3_Splice_Site_p.S110_splice|MAPKBP1_uc010bcj.2_Splice_Site|MAPKBP1_uc010bci.2_Splice_Site_p.S110_splice|MAPKBP1_uc010udb.1_Splice_Site|MAPKBP1_uc010bck.2_Splice_Site|MAPKBP1_uc010bcl.2_5'Flank	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein											central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		CCTCCCTGCAGAGTGGGCACA	0.607		NA									OREG0023077	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	91					0	0	0	0
EHD4	30844	broad.mit.edu	37	15	42211429	42211429	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:42211429G>C	uc001zot.2	-	4	966	c.903C>G	c.(901-903)ATC>ATG	p.I301M		NM_139265	NP_644670	Q9H223	EHD4_HUMAN	EH-domain containing 4	301					endocytic recycling|protein homooligomerization	early endosome membrane|endoplasmic reticulum|nucleus|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			ovary(2)	2		all_cancers(109;2.54e-12)|all_epithelial(112;6.59e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		OV - Ovarian serous cystadenocarcinoma(18;1.6e-19)|GBM - Glioblastoma multiforme(94;3.77e-06)|COAD - Colon adenocarcinoma(120;0.0474)|Colorectal(105;0.0538)		TCGCTCGCTTGATGAGGTCGT	0.632		NA											6	98					0	0	0	0
CDAN1	146059	broad.mit.edu	37	15	43021249	43021249	+	Missense_Mutation	SNP	T	T	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:43021249T>G	uc001zql.2	-	19	2734	c.2617A>C	c.(2617-2619)ATT>CTT	p.I873L	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Missense_Mutation_p.I199L	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	873						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		TTTGATCCAATTCTTTCTGCC	0.532		NA											11	152					0	0	0	0
TP53BP1	7158	broad.mit.edu	37	15	43720272	43720272	+	Missense_Mutation	SNP	C	C	T	rs144680391	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:43720272C>T	uc001zrs.2	-	18	3903	c.3755G>A	c.(3754-3756)CGT>CAT	p.R1252H	TP53BP1_uc010udp.1_Missense_Mutation_p.R1252H|TP53BP1_uc001zrq.3_Missense_Mutation_p.R1257H|TP53BP1_uc001zrr.3_Missense_Mutation_p.R1257H|TP53BP1_uc010udq.1_Missense_Mutation_p.R1257H	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1252					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		TGTAATGACACGAGTGACAAG	0.408		NA						Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					22	256					0	0	0	0
CATSPER2	117155	broad.mit.edu	37	15	43940128	43940128	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:43940128G>A	uc001zsh.2	-	2	347	c.132C>T	c.(130-132)ATC>ATT	p.I44I	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Silent_p.I44I|CATSPER2_uc001zsj.2_Silent_p.I44I|CATSPER2_uc001zsk.2_Silent_p.I44I|CATSPER2_uc001zsl.1_Intron	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	44	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		GTAACTCCCTGATAGTGTGCC	0.453		NA											13	210					0	0	0	0
SQRDL	58472	broad.mit.edu	37	15	45981265	45981265	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:45981265T>C	uc001zvt.2	+	10	1334	c.1145T>C	c.(1144-1146)GTG>GCG	p.V382A	SQRDL_uc001zvu.2_Missense_Mutation_p.V382A|SQRDL_uc001zvv.2_Missense_Mutation_p.V382A	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	382							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		TGTCCACTGGTGACCGGCTAC	0.393		NA											33	307					0	0	0	0
AP4E1	23431	broad.mit.edu	37	15	51221216	51221216	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:51221216C>T	uc001zyx.1	+	6	583	c.553C>T	c.(553-555)CGA>TGA	p.R185*	AP4E1_uc010ufi.1_Nonsense_Mutation_p.R185*|AP4E1_uc010ufj.1_RNA|AP4E1_uc010ufk.1_RNA	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	185					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		GGAGATTGTACGAAGAAAAGC	0.318		NA											6	90					0	0	0	0
HERC1	8925	broad.mit.edu	37	15	64017534	64017534	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:64017534C>T	uc002amp.2	-	18	3673	c.3525G>A	c.(3523-3525)ACG>ACA	p.T1175T	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1175					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TGAACAGTGGCGTTTTCATCC	0.473		NA											8	63					0	0	0	0
ZNF609	23060	broad.mit.edu	37	15	64792307	64792307	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:64792307C>T	uc002ann.2	+	1	689	c.689C>T	c.(688-690)CCG>CTG	p.P230L	ZNF609_uc010bgy.2_Missense_Mutation_p.P230L	NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	230						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GGAACTAAACCGGAGCCAGAG	0.532		NA											8	60					0	0	0	0
ISLR	3671	broad.mit.edu	37	15	74468208	74468208	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:74468208G>A	uc002axg.1	+	2	1291	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	ISLR_uc002axh.1_Missense_Mutation_p.E337K	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	337	Ig-like.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GGGCAGTGCTGAGAGCTCAGT	0.622		NA											4	39					0	0	0	0
SIN3A	25942	broad.mit.edu	37	15	75702243	75702243	+	Silent	SNP	C	C	T	rs142678572	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:75702243C>T	uc002bai.2	-	8	1510	c.1251G>A	c.(1249-1251)CCG>CCA	p.P417P	SIN3A_uc002baj.2_Silent_p.P417P|SIN3A_uc010uml.1_Silent_p.P417P	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	417	Interaction with REST (By similarity).				blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TGGGCCTCTGCGGCTTGTTGT	0.498		NA											15	139					0	0	0	0
RASGRF1	5923	broad.mit.edu	37	15	79327554	79327554	+	Splice_Site	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:79327554T>C	uc002beq.2	-	6	1254	c.879_splice	c.e6-1	p.S293_splice	RASGRF1_uc002bep.2_Splice_Site_p.S293_splice|RASGRF1_uc010blm.1_Splice_Site_p.S215_splice|RASGRF1_uc002ber.3_Splice_Site_p.S293_splice	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine						activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						ATGGTTTCGCTGAAAGAGAAA	0.562		NA											3	16					0	0	0	0
FSD2	123722	broad.mit.edu	37	15	83456014	83456014	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:83456014C>A	uc002bjd.2	-	2	296	c.129G>T	c.(127-129)ATG>ATT	p.M43I	FSD2_uc010uol.1_Missense_Mutation_p.M43I|FSD2_uc010uom.1_Missense_Mutation_p.M43I	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	43										central_nervous_system(1)	1						CTACTTTCCTCATCCTAGTGT	0.483		NA											23	231					8.25e-16	9.1e-16	1	0
C15orf40	123207	broad.mit.edu	37	15	83679041	83679041	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:83679041G>A	uc010uoo.1	-	2	220	c.186C>T	c.(184-186)TGC>TGT	p.C62C	C15orf40_uc010uon.1_Silent_p.C62C|C15orf40_uc002bjm.2_Silent_p.C62C|C15orf40_uc010uop.1_Silent_p.C62C|C15orf40_uc010uoq.1_RNA|C15orf40_uc010uor.1_Silent_p.C62C	NM_001160115	NP_001153587	Q8WUR7	CO040_HUMAN	hypothetical protein LOC123207 isoform d	35										skin(1)	1						CTATGGTGACGCATCCTTTAG	0.483		NA											26	220					0	0	0	0
BTBD1	53339	broad.mit.edu	37	15	83698895	83698895	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:83698895G>A	uc002bjn.2	-	5	1251	c.1048C>T	c.(1048-1050)CGA>TGA	p.R350*	BTBD1_uc002bjo.2_Nonsense_Mutation_p.R350*	NM_025238	NP_079514	Q9H0C5	BTBD1_HUMAN	BTB (POZ) domain containing 1 isoform 1	350						cytoplasmic mRNA processing body|protein complex	protein binding			ovary(1)|central_nervous_system(1)	2				all cancers(203;0.000186)		TACCTGATTCGATCACTCGTC	0.448		NA											73	687					0	0	0	0
MESP2	145873	broad.mit.edu	37	15	90321331	90321331	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:90321331G>A	uc002bon.2	+	2	960	c.960G>A	c.(958-960)CTG>CTA	p.L320L	MESP2_uc010uqa.1_Silent_p.L22L	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	320					Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			GTCTGTCGCTGGGAGCTCCAT	0.592		NA											6	91					0	0	0	0
ZNF710	374655	broad.mit.edu	37	15	90611533	90611533	+	Silent	SNP	C	C	T	rs144375764		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:90611533C>T	uc002bov.1	+	2	1287	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F		NM_198526	NP_940928	Q8N1W2	ZN710_HUMAN	zinc finger protein 710	388	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.00769)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.129)			GCCGCGGCTTCGCCTACCCCA	0.642		NA											11	56					0	0	0	0
C15orf58	390637	broad.mit.edu	37	15	90784558	90784558	+	Silent	SNP	C	C	A	rs147221532	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:90784558C>A	uc002bpc.2	+	4	597	c.418C>A	c.(418-420)CGG>AGG	p.R140R		NM_001013657	NP_001013679	Q6ZNW5	VTC2_HUMAN	hypothetical protein LOC390637	140					glucose metabolic process	cytoplasm	GDP-D-glucose phosphorylase activity				0						CCGTTTGCACCGGGAGCCTGA	0.602		NA											13	147					3.27e-08	3.5e-08	1	0
IFT140	9742	broad.mit.edu	37	16	1652541	1652541	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:1652541G>A	uc002cmb.2	-	4	561	c.199C>T	c.(199-201)CTG>TTG	p.L67L		NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	67	WD 2.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGCCAGCACAGGGAAGCAACC	0.602		NA											7	80					0	0	0	0
TRAF7	84231	broad.mit.edu	37	16	2226122	2226122	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:2226122G>T	uc002cow.2	+	19	1918	c.1819G>T	c.(1819-1821)GTC>TTC	p.V607F		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	607	WD 6.				activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						TGCCCTGGCGGTCATCTCGAC	0.657		NA											5	43					0.00116845	0.00119922	1	0
E4F1	1877	broad.mit.edu	37	16	2283182	2283182	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:2283182G>T	uc002cpm.2	+	7	1102	c.1054G>T	c.(1054-1056)GAG>TAG	p.E352*	E4F1_uc010bsi.2_Nonsense_Mutation_p.E352*|E4F1_uc010bsj.2_Nonsense_Mutation_p.E352*	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	352					cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						CCTGGCCCCAGAGGTGGGGGC	0.652		NA											11	133					0.000673444	0.00069413	1	0
C16orf59	80178	broad.mit.edu	37	16	2514053	2514053	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:2514053G>T	uc002cqh.2	+	9	1009	c.978G>T	c.(976-978)CAG>CAT	p.Q326H	C16orf59_uc002cqf.1_Missense_Mutation_p.Q326H|C16orf59_uc002cqg.1_Missense_Mutation_p.Q159H|C16orf59_uc002cqi.2_Missense_Mutation_p.Q159H|C16orf59_uc010uwb.1_Intron	NM_025108	NP_079384	Q7L2K0	CP059_HUMAN	hypothetical protein LOC80178	326											0		Ovarian(90;0.17)				TGGCGGAACAGCCACCAAGAC	0.667		NA											7	34					8.13e-05	8.44e-05	1	0
ZG16B	124220	broad.mit.edu	37	16	2880712	2880712	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:2880712G>T	uc002cru.2	+	3	254	c.178G>T	c.(178-180)GGA>TGA	p.G60*		NM_145252	NP_660295	Q96DA0	ZG16B_HUMAN	zymogen granule protein 16 homolog B precursor	60						extracellular region	sugar binding			ovary(1)	1						TGGCCCTGGAGGAGGCAAGTA	0.532		NA											22	294					5.62e-17	6.2e-17	1	0
PPL	5493	broad.mit.edu	37	16	4945273	4945273	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:4945273C>G	uc002cyd.1	-	11	1321	c.1231G>C	c.(1231-1233)GAG>CAG	p.E411Q		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	411	Spectrin 2.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						TGCTCCCCCTCAAAGTCACAG	0.502		NA											5	67					0	0	0	0
PPL	5493	broad.mit.edu	37	16	4945622	4945622	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:4945622C>A	uc002cyd.1	-	10	1158	c.1068G>T	c.(1066-1068)CAG>CAT	p.Q356H		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	356	Potential.|Spectrin 2.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GCAGCTCAATCTGGTACCGGT	0.642		NA											18	118					5.35e-07	5.68e-07	1	0
ABCC1	4363	broad.mit.edu	37	16	16103674	16103674	+	Silent	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:16103674C>G	uc010bvi.2	+	3	442	c.267C>G	c.(265-267)CTC>CTG	p.L89L	ABCC1_uc010bvj.2_Silent_p.L89L|ABCC1_uc010bvk.2_Silent_p.L89L|ABCC1_uc010bvl.2_Silent_p.L89L|ABCC1_uc010bvm.2_Silent_p.L89L|ABCC1_uc002del.3_5'UTR	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	89	Helical; Name=2.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GGGCAGACCTCTTCTACTCTT	0.552		NA											26	312					0	0	0	0
GTF3C1	2975	broad.mit.edu	37	16	27539953	27539953	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:27539953G>A	uc002dov.1	-	6	979	c.939C>T	c.(937-939)ATC>ATT	p.I313I	GTF3C1_uc002dou.2_Silent_p.I313I	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	313						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						ATTCAGGGTGGATCTCTTGCA	0.507		NA											17	206					0	0	0	0
SETD1A	9739	broad.mit.edu	37	16	30974857	30974857	+	Silent	SNP	G	G	A	rs141357385	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:30974857G>A	uc002ead.1	+	5	1307	c.621G>A	c.(619-621)TCG>TCA	p.S207S	SETD1A_uc002eae.1_Silent_p.S207S	NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	207					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						TCCAAGGCTCGGGTGCAGCCA	0.572		NA											13	81					0	0	0	0
VPS35	55737	broad.mit.edu	37	16	46712964	46712964	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:46712964C>T	uc002eef.3	-	6	710	c.611G>A	c.(610-612)CGA>CAA	p.R204Q	VPS35_uc002eed.2_Missense_Mutation_p.R25Q|VPS35_uc002eee.2_Missense_Mutation_p.R165Q	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	204					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TTCTCTATCTCGGCTATGTCC	0.433		NA											14	121					0	0	0	0
ZNF423	23090	broad.mit.edu	37	16	49672194	49672194	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:49672194G>A	uc002efs.2	-	5	1167	c.869C>T	c.(868-870)TCC>TTC	p.S290F	ZNF423_uc010vgn.1_Missense_Mutation_p.S173F	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	290					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CGCCTTCTCGGACAGCTGCGG	0.602		NA											5	73					0	0	0	0
PAPD5	64282	broad.mit.edu	37	16	50261849	50261849	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:50261849C>G	uc010vgo.1	+	12	1890	c.1855C>G	c.(1855-1857)CAG>GAG	p.Q619E	PAPD5_uc010cbi.2_RNA|PAPD5_uc002efz.2_Missense_Mutation_p.Q363E|PAPD5_uc002ega.2_Missense_Mutation_p.Q410E	NM_001040284	NP_001035374	Q8NDF8	PAPD5_HUMAN	PAP associated domain containing 5 isoform a	493	Ser-rich.				cell division|DNA replication|histone mRNA catabolic process|mitosis	cytoplasm|nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding				0		all_cancers(37;0.0452)		BRCA - Breast invasive adenocarcinoma(181;0.0843)|GBM - Glioblastoma multiforme(240;0.231)		GGAGTCCTCTCAGGCAGTTGG	0.488		NA											6	72					0	0	0	0
GPR114	221188	broad.mit.edu	37	16	57597804	57597804	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:57597804C>A	uc002elx.3	+	5	427	c.342C>A	c.(340-342)CCC>CCA	p.P114P	GPR114_uc010vhr.1_Silent_p.P114P|GPR114_uc002ely.2_Silent_p.P114P	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	114	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						TGCAGTTCCCCGCCGAGCTGA	0.622		NA											14	88					4.75e-09	5.13e-09	1	0
CDH8	1006	broad.mit.edu	37	16	62055216	62055216	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:62055216G>T	uc002eog.1	-	2	344	c.92C>A	c.(91-93)CCG>CAG	p.P31Q		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	31					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		CTGATTCATCGGAGCCATGTA	0.458		NA											8	103					5.49e-09	5.91e-09	1	0
CMTM2	146225	broad.mit.edu	37	16	66613547	66613547	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:66613547C>T	uc002ept.2	+	1	197	c.37C>T	c.(37-39)CCA>TCA	p.P13S	CMTM2_uc010cdu.2_Missense_Mutation_p.P13S	NM_144673	NP_653274	Q8TAZ6	CKLF2_HUMAN	chemokine-like factor superfamily 2	13					chemotaxis	extracellular space|integral to membrane	cytokine activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.068)|Epithelial(162;0.212)		CAAGCCAGAGCCAGCACCAGC	0.587		NA											10	99					0	0	0	0
DDX19B	11269	broad.mit.edu	37	16	70367483	70367483	+	Nonstop_Mutation	SNP	T	T	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:70367483T>G	uc002eyo.2	+	12	1567	c.1438T>G	c.(1438-1440)TGA>GGA	p.*480G	DDX19B_uc010vly.1_Intron|DDX19A_uc002eys.2_Intron|DDX19B_uc010vlv.1_Nonstop_Mutation_p.*454G|DDX19B_uc010vlw.1_Nonstop_Mutation_p.*371G|DDX19B_uc002eyp.2_Nonstop_Mutation_p.*449G|DDX19B_uc002eyq.2_Nonstop_Mutation_p.*371G|DDX19B_uc002eyr.2_Nonstop_Mutation_p.*329G|DDX19B_uc010vlx.1_Nonstop_Mutation_p.*329G|uc002eyt.2_Intron	NM_007242	NP_009173	Q9UMR2	DD19B_HUMAN	DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform	480					mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear membrane|nuclear pore	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			kidney(1)	1		Ovarian(137;0.0694)				AATAGCCAACTGAGAAGCTCC	0.537		NA											9	92					0	0	0	0
WDR59	79726	broad.mit.edu	37	16	74951881	74951881	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:74951881C>T	uc002fdh.1	-	11	1014	c.912G>A	c.(910-912)ACG>ACA	p.T304T	WDR59_uc002fdi.2_Silent_p.T304T|WDR59_uc002fdj.2_Silent_p.T304T|WDR59_uc002fdg.1_5'Flank	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	304	WD 6.									ovary(1)|breast(1)	2						CCCGGGACCACGTCACCAGTT	0.463		NA											12	166					0	0	0	0
CHST6	4166	broad.mit.edu	37	16	75513534	75513534	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:75513534C>G	uc002fef.2	-	3	373	c.193G>C	c.(193-195)GAC>CAC	p.D65H	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Missense_Mutation_p.D65H	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	65	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						TAGAAGACGTCGGGGTGCTGG	0.687		NA											5	40					0	0	0	0
PKD1L2	114780	broad.mit.edu	37	16	81253937	81253937	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:81253937C>A	uc002fgh.1	-	1	39	c.39G>T	c.(37-39)CTG>CTT	p.L13L	PKD1L2_uc002fgj.2_Silent_p.L13L	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	13					neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCCTAAGCCTCAGAGCAAGCA	0.557		NA											9	79					0.000442599	0.000458149	1	0
OSGIN1	29948	broad.mit.edu	37	16	83999318	83999318	+	Silent	SNP	C	C	T	rs149907599	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:83999318C>T	uc002fha.2	+	7	1772	c.1389C>T	c.(1387-1389)CTC>CTT	p.L463L	NECAB2_uc002fhd.2_5'Flank|OSGIN1_uc002fhb.2_Silent_p.L380L|OSGIN1_uc002fhc.2_Silent_p.L380L	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	463					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						TCCAGGACCTCGAGGGTGTCG	0.642		NA											7	104					0	0	0	0
CTU2	348180	broad.mit.edu	37	16	88778042	88778042	+	Splice_Site	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:88778042G>T	uc002flm.2	+	5	331	c.283_splice	c.e5-1	p.G95_splice	CTU2_uc002fln.2_Splice_Site_p.G95_splice|CTU2_uc010chz.2_Splice_Site_p.G95_splice|CTU2_uc010cia.2_Splice_Site_p.G8_splice	NM_001012759	NP_001012777	Q2VPK5	CTU2_HUMAN	cytoplasmic tRNA 2-thiolation protein 2 isoform						tRNA thio-modification|tRNA wobble uridine modification	cytoplasm|protein complex|soluble fraction	protein binding			skin(1)	1						TCTCCCTCTAGGGCCTGAGCC	0.527		NA											9	97					4.69e-08	5e-08	1	0
CDH15	1013	broad.mit.edu	37	16	89254679	89254679	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:89254679C>T	uc002fmt.2	+	7	1041	c.964C>T	c.(964-966)CTG>TTG	p.L322L		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	322	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		CGAGGGTGTTCTGTCCATTGT	0.637		NA											5	43					0	0	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2867170	2867170	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:2867170G>A	uc010ckd.2	+	7	390	c.300G>A	c.(298-300)CCG>CCA	p.P100P	RAP1GAP2_uc010cke.2_Silent_p.P85P	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	100					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						AGGGAGGCCCGTACCCTCAGG	0.672		NA											3	21					0	0	0	0
ACADVL	37	broad.mit.edu	37	17	7127027	7127027	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:7127027C>T	uc002gev.2	+	12	1398	c.1247C>T	c.(1246-1248)GCC>GTC	p.A416V	ACADVL_uc010vtp.1_Missense_Mutation_p.A426V|ACADVL_uc002gew.2_Missense_Mutation_p.A394V|ACADVL_uc002gex.2_Missense_Mutation_p.A340V|uc002gey.1_5'Flank|MIR324_hsa-mir-324|MI0000813_5'Flank	NM_000018	NP_000009	P49748	ACADV_HUMAN	acyl-Coenzyme A dehydrogenase, very long chain	416	Catalytic.				energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial inner membrane|mitochondrial nucleoid	long-chain-acyl-CoA dehydrogenase activity			ovary(3)	3						ATAGAGGCCGCCATCAGCAAA	0.532		NA											15	145					0	0	0	0
NEURL4	84461	broad.mit.edu	37	17	7227188	7227188	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:7227188C>T	uc002gga.1	-	12	2213	c.2206G>A	c.(2206-2208)GCC>ACC	p.A736T	NEURL4_uc002ggb.1_Missense_Mutation_p.A736T|NEURL4_uc002ggc.1_Missense_Mutation_p.A82T	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	736	NHR 4.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGGCGGAGGGCGGTGCGGCCC	0.622		NA									OREG0024134	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	105					0	0	0	0
DNAH2	146754	broad.mit.edu	37	17	7701100	7701100	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:7701100C>G	uc002giu.1	+	52	8197	c.8183C>G	c.(8182-8184)TCT>TGT	p.S2728C		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2728	AAA 4 (By similarity).|TPR 2.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CTGTCACCCTCTGTCGTGCCC	0.522		NA											18	220					0	0	0	0
MYH2	4620	broad.mit.edu	37	17	10430045	10430045	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:10430045T>C	uc010coi.2	-	30	4186	c.4058A>G	c.(4057-4059)TAT>TGT	p.Y1353C	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.Y1353C|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1353	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTCCTCCTCATACTGTTCCCG	0.582		NA											15	175					0	0	0	0
MYH3	4621	broad.mit.edu	37	17	10541713	10541713	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:10541713C>T	uc002gmq.1	-	26	3453	c.3376G>A	c.(3376-3378)GAG>AAG	p.E1126K		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1126	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GTGGCCCTCTCCGCCTCTATC	0.657		NA											5	66					0	0	0	0
RICH2	9912	broad.mit.edu	37	17	12847469	12847469	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:12847469G>A	uc002gnr.3	+	10	1144	c.817G>A	c.(817-819)GAG>AAG	p.E273K	RICH2_uc010vvk.1_Missense_Mutation_p.E273K|RICH2_uc010vvl.1_Missense_Mutation_p.E273K|RICH2_uc002gns.3_Missense_Mutation_p.E73K|RICH2_uc010vvm.1_Missense_Mutation_p.E273K|RICH2_uc010vvn.1_RNA|RICH2_uc002gnt.1_5'UTR	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	273	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						CTTCCCCATCGAGGCGTGTGT	0.642		NA											11	64					0	0	0	0
SMCR7	125170	broad.mit.edu	37	17	18167389	18167389	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:18167389C>T	uc002gst.2	+	4	887	c.676C>T	c.(676-678)CGC>TGC	p.R226C	SMCR7_uc002gsu.2_Missense_Mutation_p.A201V|SMCR7_uc010vxq.1_Missense_Mutation_p.R237C	NM_139162	NP_631901	Q96C03	SMCR7_HUMAN	Smith-Magenis syndrome chromosome region,	226						integral to membrane	protein binding				0	all_neural(463;0.228)					CTGGGCCGTGCGCAGGACGCA	0.711		NA											3	7					0	0	0	0
SLC13A2	9058	broad.mit.edu	37	17	26820669	26820669	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:26820669G>T	uc002hbh.2	+	7	1026	c.959G>T	c.(958-960)AGG>ATG	p.R320M	SLC13A2_uc010wal.1_Missense_Mutation_p.R277M|SLC13A2_uc010wam.1_Missense_Mutation_p.R276M|SLC13A2_uc010wan.1_Missense_Mutation_p.R369M|SLC13A2_uc010wao.1_Missense_Mutation_p.R277M|SLC13A2_uc002hbi.2_Missense_Mutation_p.R249M	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	320						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	ACCGAGCACAGGCTGCTGGGC	0.587		NA											5	78					3.6e-05	3.76e-05	1	0
ATAD5	79915	broad.mit.edu	37	17	29206468	29206468	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:29206468G>A	uc002hfs.1	+	18	4386	c.4040G>A	c.(4039-4041)GGC>GAC	p.G1347D		NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1347					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				ATGTTTGATGGCTGCTTTGAA	0.294		NA											16	115					0	0	0	0
MRM1	79922	broad.mit.edu	37	17	34964340	34964340	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:34964340G>A	uc002hne.2	+	4	990	c.775G>A	c.(775-777)GAG>AAG	p.E259K	MRM1_uc002hnf.2_Missense_Mutation_p.E64K	NM_024864	NP_079140	Q6IN84	MRM1_HUMAN	mitochondrial rRNA methyltransferase 1 homolog	259					RNA processing	mitochondrion	RNA binding|RNA methyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		TGCAGGGAATGAGGGCTCAGG	0.617		NA											8	88					0	0	0	0
IKZF3	22806	broad.mit.edu	37	17	37922297	37922297	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:37922297C>T	uc002hsu.2	-	8	1338	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	IKZF3_uc002htd.2_Missense_Mutation_p.E392K|IKZF3_uc010cwd.2_Missense_Mutation_p.E283K|IKZF3_uc002hsv.2_Missense_Mutation_p.E353K|IKZF3_uc010cwe.2_Missense_Mutation_p.E292K|IKZF3_uc010cwf.2_Missense_Mutation_p.E244K|IKZF3_uc010cwg.2_Missense_Mutation_p.E205K|IKZF3_uc002hsw.2_Missense_Mutation_p.E387K|IKZF3_uc002hsx.2_Missense_Mutation_p.E370K|IKZF3_uc002hsy.2_Missense_Mutation_p.E387K|IKZF3_uc002hsz.2_Missense_Mutation_p.E331K|IKZF3_uc002hta.2_Missense_Mutation_p.E348K|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.E339K|IKZF3_uc002htc.2_Missense_Mutation_p.E179K|IKZF3_uc010wel.1_Missense_Mutation_p.E179K	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	426					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TTGAGGAGTTCGTAAGAGCGG	0.552		NA											23	244					0	0	0	0
MLX	6945	broad.mit.edu	37	17	40722105	40722105	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:40722105C>A	uc002iag.2	+	7	809	c.744C>A	c.(742-744)TCC>TCA	p.S248S	MLX_uc002iaf.2_Silent_p.S194S|MLX_uc002iah.2_Silent_p.S164S	NM_170607	NP_733752	Q9UH92	MLX_HUMAN	transcription factor-like protein 4 isoform	248					energy reserve metabolic process|negative regulation of transcription, DNA-dependent|positive regulation of cellular metabolic process	cytoplasm|nucleus	DNA binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding				0		all_cancers(22;4.26e-05)|Breast(137;0.000153)|all_epithelial(22;0.00148)		BRCA - Breast invasive adenocarcinoma(366;0.129)		TCATGGATTCCCTGTTCCAGT	0.537		NA											10	143					2.53e-12	2.78e-12	1	0
RPRML	388394	broad.mit.edu	37	17	45056080	45056080	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:45056080C>G	uc002ilb.2	-	1	535	c.294G>C	c.(292-294)ATG>ATC	p.M98I	GOSR2_uc010wkh.1_Intron	NM_203400	NP_981945	Q8N4K4	RPRML_HUMAN	reprimo-like	98						integral to membrane					0						GAAAGTTGATCATGCTCTCGG	0.657		NA											5	32					0	0	0	0
OSBPL7	114881	broad.mit.edu	37	17	45888197	45888197	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:45888197G>A	uc002ilx.1	-	17	1945	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F	OSBPL7_uc002ilw.1_Missense_Mutation_p.S143F	NM_145798	NP_665741	Q9BZF2	OSBL7_HUMAN	oxysterol-binding protein-like protein 7	581					lipid transport		lipid binding				0						GGGGTGGTGGGAGACCTTGGT	0.587		NA											4	36					0	0	0	0
SP6	80320	broad.mit.edu	37	17	45924834	45924834	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:45924834C>T	uc002img.1	-	2	1294	c.962G>A	c.(961-963)CGC>CAC	p.R321H	SP6_uc002imh.1_Missense_Mutation_p.R321H	NM_199262	NP_954871	Q3SY56	SP6_HUMAN	Sp6 transcription factor	321	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CATGAAGACGCGGCTGCAGAC	0.682		NA											5	70					0	0	0	0
FAM117A	81558	broad.mit.edu	37	17	47797166	47797166	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:47797166C>G	uc002ipk.2	-	5	733	c.664G>C	c.(664-666)GAG>CAG	p.E222Q	FAM117A_uc010wlz.1_5'UTR	NM_030802	NP_110429	Q9C073	F117A_HUMAN	family with sequence similarity 117, member A	222										ovary(1)	1						AATACCTCCTCCAGCTCTTGG	0.637		NA											13	188					0	0	0	0
USP32	84669	broad.mit.edu	37	17	58303585	58303585	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:58303585T>C	uc002iyo.1	-	13	1533	c.1247A>G	c.(1246-1248)AAC>AGC	p.N416S	USP32_uc002iyn.1_Missense_Mutation_p.N86S	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	416	DUSP.				protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			TACCACAGGGTTGGCATCCTA	0.368		NA											8	83					0	0	0	0
SMURF2	64750	broad.mit.edu	37	17	62543753	62543753	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:62543753G>A	uc002jep.1	-	17	2424	c.2036C>T	c.(2035-2037)TCT>TTT	p.S679F	SMURF2_uc002jeq.1_Missense_Mutation_p.S438F|SMURF2_uc002jer.1_Missense_Mutation_p.S438F	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	679	HECT.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			AGGCACTCGAGAGGATCCTGT	0.547		NA											7	128					0	0	0	0
SDK2	54549	broad.mit.edu	37	17	71334758	71334758	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:71334758C>T	uc010dfm.2	-	45	6487	c.6487G>A	c.(6487-6489)GCT>ACT	p.A2163T	SDK2_uc002jjt.3_Missense_Mutation_p.A1303T	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	2163	Cytoplasmic (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GCTATGGGAGCCCGGGAGCCT	0.582		NA											8	42					0	0	0	0
ITGB4	3691	broad.mit.edu	37	17	73738804	73738804	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:73738804G>A	uc002jpg.2	+	25	3111	c.2924G>A	c.(2923-2925)GGC>GAC	p.G975D	ITGB4_uc002jph.2_Missense_Mutation_p.G975D|ITGB4_uc002jpi.3_Missense_Mutation_p.G975D|ITGB4_uc010dgp.1_3'UTR|ITGB4_uc002jpj.2_Missense_Mutation_p.G975D	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	975	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCACCCTCGGCCGCCGCCTG	0.498		NA											5	52					0	0	0	0
TNRC6C	57690	broad.mit.edu	37	17	76046980	76046980	+	Missense_Mutation	SNP	A	A	G	rs71717398		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:76046980A>G	uc002jud.2	+	4	2437	c.1837A>G	c.(1837-1839)AAA>GAA	p.K613E	TNRC6C_uc002juf.2_Missense_Mutation_p.K613E|TNRC6C_uc002jue.2_Missense_Mutation_p.K613E	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	613	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GGGGGATGGGAAAAAAAATGG	0.522		NA											11	116					0	0	0	0
GAA	2548	broad.mit.edu	37	17	78081373	78081373	+	Missense_Mutation	SNP	C	C	T	rs121907944		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:78081373C>T	uc002jxo.2	+	5	892	c.710C>T	c.(709-711)GCG>GTG	p.A237V	GAA_uc002jxp.2_Missense_Mutation_p.A237V|GAA_uc002jxq.2_Missense_Mutation_p.A237V	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	237			A -> V (in GSD2).		cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	ACGACGGTGGCGCCCCTGTTC	0.662		NA											24	226					0	0	0	0
LAMA1	284217	broad.mit.edu	37	18	6983142	6983142	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:6983142C>A	uc002knm.2	-	40	5846	c.5752G>T	c.(5752-5754)GAA>TAA	p.E1918*	LAMA1_uc010wzj.1_Nonsense_Mutation_p.E1394*	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1918	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGGCCAGTTCCTCCGATTCT	0.498		NA											15	106					6.32e-08	6.73e-08	1	0
CEP192	55125	broad.mit.edu	37	18	13095576	13095576	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:13095576C>T	uc010xac.1	+	35	6409	c.6329C>T	c.(6328-6330)TCT>TTT	p.S2110F	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.S1635F|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.S532F|CEP192_uc002krw.2_Missense_Mutation_p.S259F|CEP192_uc002krx.2_Missense_Mutation_p.S114F|CEP192_uc002kry.2_RNA	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	2110										ovary(4)|pancreas(1)	5						CCTCAGGGTTCTCCTCTTCTC	0.507		NA											18	186					0	0	0	0
MIB1	57534	broad.mit.edu	37	18	19418387	19418387	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:19418387G>T	uc002ktq.2	+	13	1891	c.1891G>T	c.(1891-1893)GAT>TAT	p.D631Y	MIB1_uc002ktp.2_Missense_Mutation_p.D270Y	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	631	ANK 7.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			GAAGAAAGATGATGGTTATAC	0.348		NA											9	99					1.13e-05	1.18e-05	1	0
NOL4	8715	broad.mit.edu	37	18	31538274	31538274	+	Missense_Mutation	SNP	C	C	T	rs137958344		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:31538274C>T	uc010dmi.2	-	7	1394	c.1165G>A	c.(1165-1167)GAG>AAG	p.E389K	NOL4_uc010xbs.1_Missense_Mutation_p.E104K|NOL4_uc002kxr.3_Missense_Mutation_p.E225K|NOL4_uc010xbt.1_Missense_Mutation_p.E315K|NOL4_uc010dmh.2_Missense_Mutation_p.E315K|NOL4_uc010xbu.1_Missense_Mutation_p.E389K|NOL4_uc002kxt.3_Missense_Mutation_p.E389K|NOL4_uc010xbv.1_Missense_Mutation_p.E138K|NOL4_uc010xbw.1_Missense_Mutation_p.E275K	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	389						nucleolus	RNA binding			ovary(3)	3						TCATGGTCCTCGTGGTCATCT	0.498		NA											29	329					0	0	0	0
GALNT1	2589	broad.mit.edu	37	18	33269223	33269223	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:33269223G>A	uc010dmu.2	+	7	1000	c.947G>A	c.(946-948)TGG>TAG	p.W316*	GALNT1_uc002kyz.3_Nonsense_Mutation_p.W256*|GALNT1_uc002kzb.2_Nonsense_Mutation_p.W316*	NM_020474	NP_065207	Q10472	GALT1_HUMAN	polypeptide N-acetylgalactosaminyltransferase 1	316	Lumenal (Potential).|Catalytic subdomain B.				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						ATGGATATTTGGGGAGGAGAA	0.333		NA											16	143					0	0	0	0
PSTPIP2	9050	broad.mit.edu	37	18	43573663	43573663	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:43573663C>G	uc002lbp.3	-	10	745	c.649G>C	c.(649-651)GAG>CAG	p.E217Q	PSTPIP2_uc002lbq.3_Missense_Mutation_p.E217Q	NM_024430	NP_077748	Q9H939	PPIP2_HUMAN	proline-serine-threonine phosphatase interacting	217						membrane				ovary(1)	1						TCTTGAGCCTCAAATGCCTAC	0.398		NA											9	54					0	0	0	0
WDR7	23335	broad.mit.edu	37	18	54448880	54448880	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:54448880C>A	uc002lgk.1	+	19	3394	c.3183C>A	c.(3181-3183)GTC>GTA	p.V1061V	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Silent_p.V1028V	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	1061										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		TAGACCACGTCATATCACGTA	0.453		NA											8	124					0.00307968	0.0031421	1	0
NARS	4677	broad.mit.edu	37	18	55274847	55274847	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:55274847C>T	uc002lgs.2	-	8	858	c.630G>A	c.(628-630)TTG>TTA	p.L210L	NARS_uc002lgt.2_Silent_p.L209L|NARS_uc010xea.1_Intron|NARS_uc010xeb.1_RNA|NARS_uc010xec.1_Silent_p.L210L|NARS_uc010xed.1_Silent_p.L177L	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	210					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	CAGCAGGGGCCAACCCAATTA	0.478		NA											8	64					0	0	0	0
SOCS6	9306	broad.mit.edu	37	18	67993105	67993105	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:67993105G>A	uc002lkr.1	+	2	1517	c.1201G>A	c.(1201-1203)GTG>ATG	p.V401M	SOCS6_uc010dqq.2_Missense_Mutation_p.V401M	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	401	SH2.				defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				GCTAGCAAACGTGCCAGATGG	0.473		NA											15	137					0	0	0	0
NFATC1	4772	broad.mit.edu	37	18	77170881	77170881	+	Silent	SNP	G	G	A	rs146509068		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:77170881G>A	uc010xfg.1	+	2	1059	c.606G>A	c.(604-606)ACG>ACA	p.T202T	NFATC1_uc002lnc.1_Silent_p.T202T|NFATC1_uc010xff.1_Silent_p.T202T|NFATC1_uc002lnd.2_Silent_p.T202T|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Silent_p.T202T|NFATC1_uc010xfi.1_Silent_p.T189T|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Silent_p.T189T|NFATC1_uc002lng.2_Silent_p.T189T|NFATC1_uc010xfk.1_Silent_p.T189T	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	202	Trans-activation domain A (TAD-A).				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		CCCCCCAGACGTCGCCATGGC	0.697		NA											16	168					0	0	0	0
KCNG2	26251	broad.mit.edu	37	18	77624217	77624217	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:77624217G>A	uc010xfl.1	+	1	550	c.550G>A	c.(550-552)GTG>ATG	p.V184M		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	184	Helical; Name=Segment S1; (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CTGCGTGTCCGTGTCCTTCGT	0.458		NA											3	20					0	0	0	0
THEG	51298	broad.mit.edu	37	19	375832	375832	+	Missense_Mutation	SNP	G	G	A	rs151319374		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:375832G>A	uc002lol.2	-	1	178	c.139C>T	c.(139-141)CGC>TGC	p.R47C	THEG_uc002lom.2_Missense_Mutation_p.R47C	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	47					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGTCCTGGCGTTCGGGGTCT	0.677		NA											13	105					0	0	0	0
C19orf10	56005	broad.mit.edu	37	19	4660713	4660713	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:4660713G>A	uc002may.2	-	4	406	c.337C>T	c.(337-339)CGG>TGG	p.R113W		NM_019107	NP_061980	Q969H8	CS010_HUMAN	hypothetical protein LOC56005 precursor	113						ER-Golgi intermediate compartment|extracellular region					0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.015)		TCAGCGCCCCGCACCTCTGCC	0.627		NA											8	103					0	0	0	0
C3	718	broad.mit.edu	37	19	6713251	6713251	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:6713251C>T	uc002mfm.2	-	9	1014	c.952G>A	c.(952-954)GAC>AAC	p.D318N		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	318					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CCCACCAGGTCTTCTGCTCGG	0.617		NA											6	70					0	0	0	0
FBN3	84467	broad.mit.edu	37	19	8181655	8181655	+	Silent	SNP	G	G	A	rs138173924	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:8181655G>A	uc002mjf.2	-	28	3636	c.3615C>T	c.(3613-3615)CGC>CGT	p.R1205R		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1205	EGF-like 17.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGTCACAAACGCGGGGGTTCT	0.592		NA											12	118					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	8974003	8974003	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:8974003T>C	uc002mkp.2	-	76	42872	c.42668A>G	c.(42667-42669)TAC>TGC	p.Y14223C	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.Y1023C|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGGTGATGTACTCTGAGGA	0.517		NA											2	8					0	0	0	0
ZNF266	10781	broad.mit.edu	37	19	9524481	9524481	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:9524481G>C	uc002mll.2	-	4	1386	c.1120C>G	c.(1120-1122)CAC>GAC	p.H374D	ZNF266_uc002mlm.2_Missense_Mutation_p.H374D|ZNF266_uc002mln.2_Missense_Mutation_p.H374D|ZNF266_uc002mlo.2_Missense_Mutation_p.H374D|ZNF266_uc010dwp.2_Missense_Mutation_p.H374D|ZNF266_uc010dwq.2_Missense_Mutation_p.H374D	NM_198058	NP_932175	Q14584	ZN266_HUMAN	zinc finger protein 266	374	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCTCCACTGTGAGTTCGTGCA	0.448		NA											13	153					0	0	0	0
DNM2	1785	broad.mit.edu	37	19	10893656	10893656	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:10893656C>T	uc002mps.1	+	6	873	c.709C>T	c.(709-711)CGC>TGC	p.R237C	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Missense_Mutation_p.R237C|DNM2_uc002mpv.1_Missense_Mutation_p.R237C|DNM2_uc002mpu.1_Missense_Mutation_p.R237C|DNM2_uc010dxl.1_Missense_Mutation_p.R237C|DNM2_uc002mpw.2_5'UTR	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	237					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			CGTGGTGAACCGCAGCCAGAA	0.597		NA											9	94					0	0	0	0
CARM1	10498	broad.mit.edu	37	19	11030598	11030598	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:11030598C>T	uc002mpz.2	+	10	1278	c.1152C>T	c.(1150-1152)GTC>GTT	p.V384V	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_Silent_p.V167V	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	384					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						CAGGGCTGGTCCACGGCCTGG	0.592		NA											4	53					0	0	0	0
ZNF439	90594	broad.mit.edu	37	19	11978597	11978597	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:11978597G>C	uc002mss.2	+	3	841	c.713G>C	c.(712-714)GGA>GCA	p.G238A	ZNF439_uc002msr.2_Missense_Mutation_p.G102A	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	238					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ACTCACACTGGAGAGAAACCG	0.368		NA											15	187					0	0	0	0
MAST1	22983	broad.mit.edu	37	19	12978714	12978714	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:12978714C>T	uc002mvm.2	+	20	2617	c.2489C>T	c.(2488-2490)GCG>GTG	p.A830V		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	830					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TCCGACCCCGCGGGATCCCTG	0.711		NA											6	48					0	0	0	0
BRD4	23476	broad.mit.edu	37	19	15374334	15374334	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:15374334C>T	uc002nar.2	-	7	1460	c.1238G>A	c.(1237-1239)CGT>CAT	p.R413H	BRD4_uc002nas.2_Missense_Mutation_p.R413H|BRD4_uc002nat.3_Missense_Mutation_p.R413H|BRD4_uc002nau.3_Missense_Mutation_p.R413H	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	413	Bromo 2.				interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			CTGAGCATCACGGTACTCACG	0.537		NA	T	NUT|C15orf55	lethal midline carcinoma of young people								8	70					0	0	0	0
PDCD2L	84306	broad.mit.edu	37	19	34912527	34912527	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:34912527C>T	uc002nvj.2	+	6	934	c.901C>T	c.(901-903)CAG>TAG	p.Q301*		NM_032346	NP_115722	Q9BRP1	PDD2L_HUMAN	programmed cell death 2-like	301						cytoplasm				ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			ATTTGAGTTTCAGCTTATGCC	0.453		NA											28	283					0	0	0	0
TMEM147	10430	broad.mit.edu	37	19	36037660	36037660	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:36037660G>C	uc002oaj.1	+	4	391	c.294G>C	c.(292-294)AAG>AAC	p.K98N	uc010eec.1_5'Flank|uc002oag.2_5'Flank|TMEM147_uc002oai.1_Missense_Mutation_p.K49N|TMEM147_uc002oak.1_Missense_Mutation_p.R8T	NM_032635	NP_116024	Q9BVK8	TM147_HUMAN	transmembrane protein 147	98						endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			GAGAGTACAAGATCATGGTTG	0.582		NA											6	105					0	0	0	0
PSENEN	55851	broad.mit.edu	37	19	36237739	36237739	+	Silent	SNP	C	C	T	rs148274462		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:36237739C>T	uc002obi.1	+	4	501	c.297C>T	c.(295-297)GGC>GGT	p.G99G	TMEM149_uc010eej.2_5'Flank|U2AF1L4_uc002obh.1_5'Flank|U2AF1L4_uc002obe.2_5'Flank|U2AF1L4_uc002obf.2_5'Flank|U2AF1L4_uc002obg.2_5'Flank|PSENEN_uc002obj.1_Silent_p.G99G|PSENEN_uc002obk.1_Intron|LIN37_uc002obm.2_5'Flank	NM_172341	NP_758844	Q9NZ42	PEN2_HUMAN	presenilin enhancer 2	99	Lumenal (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to plasma membrane	aspartic-type endopeptidase activity|protein binding			ovary(2)	2	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TACCCCTGGGCACCCCCTGAC	0.592		NA											16	82					0	0	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38591746	38591746	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:38591746G>A	uc002ohk.2	+	6	2418	c.1909G>A	c.(1909-1911)GAG>AAG	p.E637K		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	637	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCAGAGCTCCGAGGAGGAGAT	0.607		NA											5	37					0	0	0	0
KCNK6	9424	broad.mit.edu	37	19	38817967	38817967	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:38817967T>C	uc002oic.2	+	3	976	c.866T>C	c.(865-867)ATC>ACC	p.I289T	KCNK6_uc002oid.2_Missense_Mutation_p.I155T	NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	289	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	CGGGTGGACATCCTGGGCCCC	0.662		NA											12	105					0	0	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39911453	39911453	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:39911453C>G	uc010xuz.1	+	13	1685	c.1360C>G	c.(1360-1362)CGA>GGA	p.R454G	PLEKHG2_uc010xuy.1_Missense_Mutation_p.R395G|PLEKHG2_uc002olj.2_Missense_Mutation_p.R454G|PLEKHG2_uc010xva.1_Missense_Mutation_p.R261G	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	454					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TCCTCGACCTCGAGATGCTAG	0.582		NA											23	204					0	0	0	0
PRX	57716	broad.mit.edu	37	19	40901949	40901949	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:40901949C>A	uc002onr.2	-	7	2579	c.2310G>T	c.(2308-2310)AAG>AAT	p.K770N	PRX_uc002onq.2_Missense_Mutation_p.K631N|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	770	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTCTGGTGCCTTCGGAAGAT	0.592		NA											54	239					1.04e-30	1.16e-30	1	0
CEACAM1	634	broad.mit.edu	37	19	43025447	43025447	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:43025447C>G	uc002otv.2	-	4	1043	c.930G>C	c.(928-930)AGG>AGC	p.R310S	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc010eii.2_RNA|CEACAM1_uc002otw.2_Missense_Mutation_p.R310S|CEACAM1_uc010eij.2_Missense_Mutation_p.R310S|CEACAM1_uc002otx.2_Missense_Mutation_p.R310S|CEACAM1_uc002oty.2_Missense_Mutation_p.R310S|CEACAM1_uc002otz.2_Missense_Mutation_p.R310S|CEACAM1_uc010eik.2_Intron|CEACAM1_uc002oua.2_Missense_Mutation_p.R310S|CEACAM1_uc002oub.2_Missense_Mutation_p.R310S|CEACAM1_uc002ouc.2_Missense_Mutation_p.R310S	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	310	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	TGACTGTGGTCCTGTTGCAGC	0.448		NA											13	238					0	0	0	0
PSG6	5675	broad.mit.edu	37	19	43585208	43585208	+	Silent	SNP	G	G	A	rs148293206	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:43585208G>A	uc002ovi.2	-	2	348	c.255C>T	c.(253-255)GAC>GAT	p.D85D	PSG6_uc010xwk.1_Intron|PSG2_uc002ovr.2_Silent_p.D85D|PSG2_uc002ovq.3_Silent_p.D85D|PSG2_uc010eiq.1_Silent_p.D85D|PSG2_uc002ovs.3_Silent_p.D85D|PSG2_uc002ovt.3_Silent_p.D85D			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	85	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TTATTTGACCGTCTACTACAT	0.443		NA											29	532					0	0	0	0
IRGQ	126298	broad.mit.edu	37	19	44099016	44099016	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:44099016C>T	uc002oww.2	-	1	593	c.475G>A	c.(475-477)GAG>AAG	p.E159K	IRGQ_uc010eiv.2_Missense_Mutation_p.E159K|ZNF576_uc002owy.2_5'Flank|ZNF576_uc002owz.2_5'Flank|SRRM5_uc002oxb.2_5'Flank	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	159	Potential.						protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				TCTAGCTCCTCGCAGCCGTCG	0.667		NA											7	33					0	0	0	0
ZFP112	7771	broad.mit.edu	37	19	44832114	44832114	+	Silent	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:44832114A>G	uc010ejj.2	-	5	2327	c.2214T>C	c.(2212-2214)GGT>GGC	p.G738G	ZFP112_uc002ozc.3_Silent_p.G732G|ZFP112_uc010xwy.1_Silent_p.G755G|ZFP112_uc010xwz.1_Silent_p.G737G	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	738	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CTCTCTGATGACCTTGAAGAT	0.458		NA											23	450					0	0	0	0
PVR	5817	broad.mit.edu	37	19	45153219	45153219	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:45153219C>T	uc002ozm.2	+	3	865	c.566C>T	c.(565-567)ACG>ATG	p.T189M	PVR_uc010ejs.2_Missense_Mutation_p.T189M|PVR_uc010xxb.1_Missense_Mutation_p.T189M|PVR_uc010xxc.1_Missense_Mutation_p.T189M|PVR_uc002ozn.2_Missense_Mutation_p.T134M	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	189	Extracellular (Potential).|Ig-like C2-type 1.				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		ATGCCCAATACGAGCCAGGTG	0.632		NA											18	86					0	0	0	0
STRN4	29888	broad.mit.edu	37	19	47231911	47231911	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:47231911G>A	uc002pfl.2	-	7	1036	c.1003C>T	c.(1003-1005)CGG>TGG	p.R335W	STRN4_uc002pfm.2_Missense_Mutation_p.R335W|STRN4_uc010xyf.1_RNA|STRN4_uc010xyg.1_RNA	NM_013403	NP_037535	Q9NRL3	STRN4_HUMAN	zinedin isoform 1	335						cytoplasm|membrane	armadillo repeat domain binding|calmodulin binding|protein complex binding|protein phosphatase 2A binding				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000563)|all cancers(93;0.00138)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.035)		GTGCACCGCCGAGGGTCTGGA	0.612		NA											10	68					0	0	0	0
GYS1	2997	broad.mit.edu	37	19	49473096	49473096	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:49473096C>T	uc002plp.2	-	15	2067	c.1826G>A	c.(1825-1827)CGC>CAC	p.R609H	GYS1_uc010xzy.1_Missense_Mutation_p.R242H|GYS1_uc010emm.2_Missense_Mutation_p.R545H|GYS1_uc010xzz.1_Missense_Mutation_p.R529H	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	609					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		CGCCATGTGGCGCGCAGACAT	0.612		NA											10	110					0	0	0	0
FCGRT	2217	broad.mit.edu	37	19	50017242	50017242	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:50017242G>C	uc002poe.2	+	3	663	c.177G>C	c.(175-177)CTG>CTC	p.L59L	FCGRT_uc002pod.2_RNA|FCGRT_uc002pog.2_Silent_p.L59L|FCGRT_uc002pof.1_5'UTR|FCGRT_uc010yax.1_Silent_p.L59L|FCGRT_uc002poh.1_5'Flank	NM_001136019	NP_001129491	P55899	FCGRN_HUMAN	Fc fragment of IgG, receptor, transporter, alpha	59	Extracellular (Potential).|Alpha-1.				antigen processing and presentation|female pregnancy|immune response	integral to membrane|MHC class I protein complex	IgG binding|receptor activity			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00291)|GBM - Glioblastoma multiforme(134;0.0156)		AGCAGTACCTGAGCTACAATA	0.642		NA											30	167					0	0	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50462016	50462016	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:50462016G>A	uc010ybh.1	-	7	1338	c.1247C>T	c.(1246-1248)TCA>TTA	p.S416L	SIGLEC11_uc010ybi.1_Missense_Mutation_p.S416L	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	416	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CCCGGGGTCTGAGGGCTGGGA	0.677		NA											28	140					0	0	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51917032	51917032	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:51917032C>T	uc002pwo.2	-	10	2371	c.1755G>A	c.(1753-1755)AGG>AGA	p.R585R	SIGLEC10_uc002pwp.2_Silent_p.R527R|SIGLEC10_uc002pwq.2_Silent_p.R432R|SIGLEC10_uc002pwr.2_Silent_p.R490R|SIGLEC10_uc010ycy.1_Silent_p.R400R|SIGLEC10_uc010ycz.1_Silent_p.R442R|SIGLEC10_uc010eow.2_Silent_p.R302R|SIGLEC10_uc002pws.1_Silent_p.R326R	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	585	Cytoplasmic (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		AGAACCTGGGCCTCGGGGTTT	0.537		NA											16	212					0	0	0	0
ZNF880	400713	broad.mit.edu	37	19	52887776	52887776	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:52887776C>T	uc002pzc.2	+	4	992	c.943C>T	c.(943-945)CAG>TAG	p.Q315*		NM_001145434	NP_001138906	Q6PDB4	ZN880_HUMAN	zinc finger protein LOC400713	315	C2H2-type 5.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						TGCACGACATCAGAAAATTCA	0.423		NA											7	59					0	0	0	0
ZNF468	90333	broad.mit.edu	37	19	53344521	53344521	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:53344521C>A	uc002qaf.2	-	4	1177	c.1026G>T	c.(1024-1026)CTG>CTT	p.L342L	ZNF468_uc002qae.2_Silent_p.L289L	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	342	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		TATGTTTTGCCAGATATGAAT	0.383		NA											23	260					1.5e-11	1.64e-11	1	0
LAIR2	3904	broad.mit.edu	37	19	55014149	55014149	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:55014149C>T	uc002qgc.2	+	1	137	c.15C>T	c.(13-15)CTC>CTT	p.L5L	LAIR2_uc002qga.1_Intron|LAIR2_uc002qgb.1_Intron|LAIR2_uc002qgd.2_Silent_p.L5L|LAIR2_uc010erl.2_Silent_p.L5L	NM_002288	NP_002279	Q6ISS4	LAIR2_HUMAN	leukocyte-associated immunoglobulin-like	5						extracellular region	receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0967)		CTCCACACCTCACTGCTCTCC	0.627		NA											12	133					0	0	0	0
LILRA2	11027	broad.mit.edu	37	19	55086049	55086049	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:55086049G>T	uc002qgg.3	+	3	441	c.352G>T	c.(352-354)GGA>TGA	p.G118*	LILRA2_uc010ern.2_Nonsense_Mutation_p.G118*|LILRA2_uc002qgf.2_Nonsense_Mutation_p.G118*|LILRA2_uc010yfe.1_Nonsense_Mutation_p.G118*|LILRA2_uc010yff.1_Nonsense_Mutation_p.G106*|LILRA2_uc010ero.2_Nonsense_Mutation_p.G106*|LILRA2_uc010yfg.1_Nonsense_Mutation_p.G118*	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	118	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GGTGGTGACAGGTGAGAGGAC	0.607		NA											19	88					2.94e-08	3.16e-08	1	0
NLRP5	126206	broad.mit.edu	37	19	56569758	56569758	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:56569758C>G	uc002qmj.2	+	14	3452	c.3452C>G	c.(3451-3453)TCT>TGT	p.S1151C	NLRP5_uc002qmi.2_Missense_Mutation_p.S1132C	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1151						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TGTCCCACGTCTAACTTACAG	0.483		NA											7	56					0	0	0	0
ZNF543	125919	broad.mit.edu	37	19	57839434	57839434	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:57839434G>A	uc002qoi.1	+	4	949	c.604G>A	c.(604-606)GAG>AAG	p.E202K		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	202	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CTATAAATGTGAGGAATGCGG	0.413		NA											12	153					0	0	0	0
ZNF416	55659	broad.mit.edu	37	19	58083744	58083744	+	Missense_Mutation	SNP	C	C	T	rs147696919		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:58083744C>T	uc002qpf.2	-	4	1699	c.1528G>A	c.(1528-1530)GTT>ATT	p.V510I	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	510	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		TGGTGTTCAACGAGGGTATAG	0.428		NA											9	171					0	0	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028991	59028991	+	Missense_Mutation	SNP	C	C	T	rs117819245	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:59028991C>T	uc002qtd.2	-	2	342	c.50G>A	c.(49-51)CGC>CAC	p.R17H	ZBTB45_uc002qte.2_Missense_Mutation_p.R17H|ZBTB45_uc002qtf.2_Missense_Mutation_p.R17H	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	17					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		AAGCAGAGAGCGTGAGAAGTT	0.592		NA									OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	58					0	0	0	0
ADI1	55256	broad.mit.edu	37	2	3504681	3504681	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:3504681C>T	uc002qxp.3	-	3	416	c.324G>A	c.(322-324)AGG>AGA	p.R108R	ADI1_uc010yiq.1_RNA	NM_018269	NP_060739	Q9BV57	MTND_HUMAN	acireductone dioxygenase 1	108				R -> G (in Ref. 5; BAD96187).	L-methionine salvage from methylthioadenosine	cytoplasm|nucleus|plasma membrane	acireductone dioxygenase (Ni2+-requiring) activity|metal ion binding|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0729)|Epithelial(75;0.173)|all cancers(51;0.228)		CCTCCTTGTCCCTCACATCGA	0.542		NA											8	68					0	0	0	0
COLEC11	78989	broad.mit.edu	37	2	3691322	3691322	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:3691322G>A	uc002qya.2	+	7	578	c.430G>A	c.(430-432)GCC>ACC	p.A144T	COLEC11_uc002qxz.2_Missense_Mutation_p.A141T|COLEC11_uc002qyb.2_Missense_Mutation_p.A120T|COLEC11_uc002qyc.2_Missense_Mutation_p.A120T|COLEC11_uc010ewo.2_Missense_Mutation_p.A96T|COLEC11_uc010ewp.2_Missense_Mutation_p.A118T|COLEC11_uc010ewq.2_Missense_Mutation_p.A94T|COLEC11_uc010ewr.2_Missense_Mutation_p.A94T|COLEC11_uc010ews.2_Missense_Mutation_p.A70T	NM_024027	NP_076932	Q9BWP8	COL11_HUMAN	collectin sub-family member 11 isoform a	144	Potential.					collagen	mannose binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.127)		CACAGCTGTCGCCGGTGTGCG	0.637		NA											15	127					0	0	0	0
WDR35	57539	broad.mit.edu	37	2	20138032	20138032	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:20138032C>T	uc002rdi.2	-	19	2198	c.2090G>A	c.(2089-2091)CGA>CAA	p.R697Q	WDR35_uc002rdj.2_Missense_Mutation_p.R686Q|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_Missense_Mutation_p.R262Q|WDR35_uc002rdk.3_Missense_Mutation_p.R262Q	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	697										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATACCAAAGTCGGGGGTGTGG	0.443		NA											14	166					0	0	0	0
ITSN2	50618	broad.mit.edu	37	2	24443816	24443816	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:24443816C>T	uc002rfe.2	-	30	3955	c.3697G>A	c.(3697-3699)GAG>AAG	p.E1233K	ITSN2_uc002rff.2_Missense_Mutation_p.E1206K|ITSN2_uc002rfg.2_Missense_Mutation_p.E1233K	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	1233	DH.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCCTCACCTCGACGACGAGC	0.552		NA											32	223					0	0	0	0
NCOA1	8648	broad.mit.edu	37	2	24952396	24952396	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:24952396G>C	uc002rfk.2	+	15	3171	c.2913G>C	c.(2911-2913)GAG>GAC	p.E971D	NCOA1_uc010eye.2_Missense_Mutation_p.E971D|NCOA1_uc002rfi.2_Missense_Mutation_p.E820D|NCOA1_uc002rfj.2_Missense_Mutation_p.E971D|NCOA1_uc002rfl.2_Missense_Mutation_p.E971D	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	971	Interaction with CREBBP.								PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TATTATCAGAGAGATTTCCAC	0.403		NA	T	PAX3	alveolar rhadomyosarcoma								23	188					0	0	0	0
IFT172	26160	broad.mit.edu	37	2	27684340	27684340	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:27684340C>T	uc002rku.2	-	22	2289	c.2238G>A	c.(2236-2238)TGG>TGA	p.W746*		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	746					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TGTCCATCAGCCACTGGTAGT	0.582		NA											12	195					0	0	0	0
FAM82A1	151393	broad.mit.edu	37	2	38202364	38202364	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:38202364G>A	uc002rql.2	+	4	760	c.637G>A	c.(637-639)GAA>AAA	p.E213K	FAM82A1_uc002rqn.1_Missense_Mutation_p.E391K|FAM82A1_uc002rqk.1_Missense_Mutation_p.E68K|FAM82A1_uc002rqm.2_Missense_Mutation_p.E68K	NM_144713	NP_653314	Q96LZ7	RMD2_HUMAN	family with sequence similarity 82, member A1	213						cytoplasm|integral to membrane|microtubule|spindle pole	binding			ovary(1)	1						GTTTAGAGATGAAATAGAGTT	0.318		NA											7	88					0	0	0	0
TMEM178	130733	broad.mit.edu	37	2	39934249	39934249	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:39934249G>A	uc002rrt.2	+	3	600	c.575G>A	c.(574-576)TGC>TAC	p.C192Y	TMEM178_uc010fam.1_Intron	NM_152390	NP_689603	Q8NBL3	TM178_HUMAN	transmembrane protein 178 precursor	192	Helical; (Potential).					integral to membrane					0		all_hematologic(82;0.248)				CTCTGCGGCTGCATTGTGGCC	0.527		NA											5	49					0	0	0	0
NRXN1	9378	broad.mit.edu	37	2	50149190	50149190	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:50149190G>A	uc010fbp.2	-	6	2028	c.1221C>T	c.(1219-1221)ATC>ATT	p.I407I	NRXN1_uc002rxb.3_Silent_p.I1141I|NRXN1_uc010fbq.2_Silent_p.I1512I|NRXN1_uc002rxe.3_Silent_p.I1442I|NRXN1_uc010yon.1_Silent_p.I107I|NRXN1_uc002rxa.3_Silent_p.I104I	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	407	Cytoplasmic (Potential).				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CTGAGTTACTGATGTAGTTTC	0.463		NA											13	137					0	0	0	0
NRXN1	9378	broad.mit.edu	37	2	50280582	50280582	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:50280582C>T	uc010fbp.2	-	4	1567	c.760G>A	c.(760-762)GCC>ACC	p.A254T	NRXN1_uc002rxb.3_Missense_Mutation_p.A991T|NRXN1_uc010fbq.2_Missense_Mutation_p.A1359T|NRXN1_uc002rxe.3_Missense_Mutation_p.A1289T	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	254	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CCCACTATGGCGATGTTGGCA	0.507		NA											13	142					0	0	0	0
CHAC2	494143	broad.mit.edu	37	2	53995077	53995077	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:53995077G>C	uc002rxk.1	+	1	149	c.54G>C	c.(52-54)CAG>CAC	p.Q18H	ASB3_uc002rxg.1_Intron|ASB3_uc002rxh.1_Intron|ASB3_uc002rxi.3_Intron|ASB3_uc010yoo.1_Intron	NM_001008708	NP_001008708	Q8WUX2	CHAC2_HUMAN	ChaC, cation transport regulator-like 2	18											0			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			TCCCCTATCAGGACAAGCTGG	0.627		NA									OREG0014616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	40					0	0	0	0
SPTBN1	6711	broad.mit.edu	37	2	54856884	54856884	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:54856884G>A	uc002rxu.2	+	14	2862	c.2613G>A	c.(2611-2613)TGG>TGA	p.W871*	SPTBN1_uc002rxv.1_Nonsense_Mutation_p.W871*|SPTBN1_uc002rxx.2_Nonsense_Mutation_p.W858*	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	871	Spectrin 6.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			AGGAGCAGTGGCTCAACAACA	0.602		NA											6	78					0	0	0	0
VAX2	25806	broad.mit.edu	37	2	71148327	71148327	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:71148327G>A	uc002shh.2	+	2	379	c.347G>A	c.(346-348)CGC>CAC	p.R116H		NM_012476	NP_036608	Q9UIW0	VAX2_HUMAN	ventral anterior homeobox 2	116	Homeobox.				ectoderm development|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGCTGTACCGCCTGGAGATG	0.622		NA											9	68					0	0	0	0
RTKN	6242	broad.mit.edu	37	2	74653396	74653396	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:74653396G>A	uc002sle.2	-	12	1783	c.1666C>T	c.(1666-1668)CGC>TGC	p.R556C	RTKN_uc002slc.2_Missense_Mutation_p.R543C|RTKN_uc002sld.2_Missense_Mutation_p.R506C	NM_001015055	NP_001015055	Q9BST9	RTKN_HUMAN	rhotekin isoform a	556					apoptosis|regulation of anti-apoptosis|Rho protein signal transduction	intracellular	GTP binding|GTP-Rho binding|GTPase inhibitor activity			skin(1)	1						AGCCAAGTGCGAGGTTGGCCT	0.622		NA											34	320					0	0	0	0
LBX2	85474	broad.mit.edu	37	2	74725408	74725408	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:74725408G>A	uc002slv.3	-	2	248	c.243C>T	c.(241-243)TTC>TTT	p.F81F	LBX2_uc002slw.2_Silent_p.F77F	NM_001009812	NP_001009812	Q6XYB7	LBX2_HUMAN	ladybird homeobox 2	81						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTTTGCGGCCGAAGGGACCAG	0.667		NA											6	14					0	0	0	0
AUP1	550	broad.mit.edu	37	2	74756406	74756406	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:74756406G>A	uc010yry.1	-	3	410	c.192C>T	c.(190-192)TTC>TTT	p.F64F	DQX1_uc010yrw.1_5'Flank|AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_Silent_p.F64F|AUP1_uc002smg.2_RNA|AUP1_uc002smh.2_5'UTR|AUP1_uc010yrx.1_Silent_p.F121F|HTRA2_uc002smi.1_5'Flank|HTRA2_uc002smj.1_5'Flank|HTRA2_uc002smk.1_5'Flank|HTRA2_uc002sml.1_5'Flank|HTRA2_uc002smm.1_5'Flank|HTRA2_uc002smn.1_5'Flank|HTRA2_uc010ffl.2_5'Flank			Q9Y679	AUP1_HUMAN	SubName: Full=cDNA FLJ58836, highly similar to Ancient ubiquitous protein 1;	64	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nucleus	protein binding				0						TCCGCACTACGAATCTGGGGA	0.637		NA											5	58					0	0	0	0
HTRA2	27429	broad.mit.edu	37	2	74758074	74758074	+	Missense_Mutation	SNP	G	G	A	rs142306682		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:74758074G>A	uc002smi.1	+	3	1350	c.748G>A	c.(748-750)GAT>AAT	p.D250N	AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_5'Flank|AUP1_uc002smg.2_5'Flank|AUP1_uc002smh.2_5'Flank|AUP1_uc010yrx.1_5'Flank|AUP1_uc010yry.1_5'Flank|HTRA2_uc002smj.1_Intron|HTRA2_uc002smk.1_Missense_Mutation_p.D250N|HTRA2_uc002sml.1_Missense_Mutation_p.D250N|HTRA2_uc002smm.1_5'UTR|HTRA2_uc002smn.1_5'UTR|HTRA2_uc010ffl.2_5'UTR	NM_013247	NP_037379	O43464	HTRA2_HUMAN	HtrA serine peptidase 2 isoform 1 preproprotein	250	Serine protease.				apoptosis|proteolysis|response to stress	CD40 receptor complex|endoplasmic reticulum membrane|internal side of plasma membrane|mitochondrial intermembrane space|mitochondrial membrane|nucleus	serine-type endopeptidase activity|unfolded protein binding			ovary(1)	1						ACGCTCAGCTGATGTCCGGCA	0.552		NA											35	486					0	0	0	0
CTNNA2	1496	broad.mit.edu	37	2	80136879	80136879	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:80136879G>A	uc010ysh.1	+	6	1017	c.1012G>A	c.(1012-1014)GTG>ATG	p.V338M	CTNNA2_uc010yse.1_Missense_Mutation_p.V338M|CTNNA2_uc010ysf.1_Missense_Mutation_p.V338M|CTNNA2_uc010ysg.1_Missense_Mutation_p.V338M	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	338					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						GTGCAACGCCGTGCGGCAGGC	0.597		NA											11	92					0	0	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105889405	105889405	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:105889405C>T	uc002tcq.2	-	10	1963	c.1879G>A	c.(1879-1881)GCC>ACC	p.A627T	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.A396T|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.A627T	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	627					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						TTGCCACTGGCGGAGGCCCTC	0.577		NA											12	71					0	0	0	0
GCC2	9648	broad.mit.edu	37	2	109111839	109111839	+	Missense_Mutation	SNP	G	G	C	rs148279219		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:109111839G>C	uc002tec.2	+	20	4694	c.4540G>C	c.(4540-4542)GAG>CAG	p.E1514Q	GCC2_uc002ted.2_Missense_Mutation_p.E1413Q	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1514	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						AACCCGGGAAGAGGGAGAAGG	0.483		NA											8	77					0	0	0	0
RANBP2	5903	broad.mit.edu	37	2	109383191	109383191	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:109383191G>A	uc002tem.3	+	20	6322	c.6196G>A	c.(6196-6198)GAG>AAG	p.E2066K		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2066	RanBD1 2.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TCTCAAAAACGAGGTCAATGG	0.398		NA											68	639					0	0	0	0
UGGT1	56886	broad.mit.edu	37	2	128935448	128935448	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:128935448G>C	uc002tps.2	+	33	3845	c.3667G>C	c.(3667-3669)GAT>CAT	p.D1223H	UGGT1_uc002tpr.2_Missense_Mutation_p.D1199H	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1223					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						CTTGCTGAGTGATGGAACGAG	0.388		NA											16	173					0	0	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131803638	131803638	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:131803638G>A	uc002tsa.1	+	14	2469	c.1949G>A	c.(1948-1950)CGC>CAC	p.R650H	ARHGEF4_uc010fmw.1_Missense_Mutation_p.R798H|ARHGEF4_uc002tsb.1_3'UTR|ARHGEF4_uc010fmx.1_Missense_Mutation_p.R590H|ARHGEF4_uc002tsc.1_Missense_Mutation_p.R193H	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	650					apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		TACCTGACGCGCCAGAAGCAC	0.667		NA											17	186					0	0	0	0
YSK4	80122	broad.mit.edu	37	2	135745629	135745629	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:135745629C>T	uc002tue.1	-	7	844	c.813G>A	c.(811-813)TCG>TCA	p.S271S	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Silent_p.S158S|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_5'UTR|YSK4_uc002tui.3_Silent_p.S288S	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	271							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GATCCATCAACGACTTAACTA	0.483		NA											23	151					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141625775	141625775	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:141625775C>T	uc002tvj.1	-	26	5199	c.4227G>A	c.(4225-4227)ATG>ATA	p.M1409I	LRP1B_uc010fnl.1_Missense_Mutation_p.M591I	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1409	Extracellular (Potential).|LDL-receptor class B 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGCACCACTCATAGAGGCAG	0.368		NA								TSP Lung(27;0.18)			10	116					0	0	0	0
KYNU	8942	broad.mit.edu	37	2	143676239	143676239	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:143676239C>A	uc002tvl.2	+	3	361	c.231C>A	c.(229-231)GGC>GGA	p.G77G	KYNU_uc002tvk.2_Silent_p.G77G|KYNU_uc010fnm.2_Silent_p.G77G	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	77					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	ATTCTCTTGGCCTTCAACCAA	0.279		NA											9	57					1.13e-05	1.18e-05	1	0
SCN3A	6328	broad.mit.edu	37	2	166032878	166032878	+	Silent	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:166032878T>C	uc002ucx.2	-	3	519	c.27A>G	c.(25-27)CCA>CCG	p.P9P	SCN3A_uc002ucy.2_Silent_p.P9P|SCN3A_uc002ucz.2_Silent_p.P9P	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	9						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTTCAGGTCCTGGGGGTACCA	0.423		NA											13	175					0	0	0	0
FASTKD1	79675	broad.mit.edu	37	2	170428478	170428478	+	Missense_Mutation	SNP	A	A	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:170428478A>C	uc002uev.3	-	2	450	c.62T>G	c.(61-63)ATT>AGT	p.I21S	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Missense_Mutation_p.I7S|FASTKD1_uc002uey.2_Missense_Mutation_p.I7S	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	21					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						GAATGGACAAATAGCTCTTAG	0.358		NA											14	91					0	0	0	0
PHOSPHO2	493911	broad.mit.edu	37	2	170558169	170558169	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:170558169G>C	uc002ufg.2	+	4	1076	c.688G>C	c.(688-690)GAT>CAT	p.D230H	KLHL23_uc002ufh.1_Intron	NM_001008489	NP_001008489	Q8TCD6	PHOP2_HUMAN	phosphatase, orphan 2	230							metal ion binding|pyridoxal phosphatase activity			skin(1)	1						CTCAGGTGTTGATATAATTTC	0.264		NA											16	106					0	0	0	0
ITGA4	3676	broad.mit.edu	37	2	182350666	182350666	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:182350666G>A	uc002unu.2	+	10	1863	c.1100G>A	c.(1099-1101)AGA>AAA	p.R367K	ITGA4_uc010zfl.1_Missense_Mutation_p.R367K	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	367	FG-GAP 6.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TATGCTGCAAGATTTGGGGAA	0.363		NA											16	140					0	0	0	0
CASP8	841	broad.mit.edu	37	2	202141631	202141631	+	Missense_Mutation	SNP	C	C	T	rs17860424		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:202141631C>T	uc002uxr.1	+	8	951	c.742C>T	c.(742-744)CGG>TGG	p.R248W	CASP8_uc002uxo.1_Missense_Mutation_p.T226M|CASP8_uc002uxp.1_Missense_Mutation_p.R265W|CASP8_uc002uxq.1_Missense_Mutation_p.R233W|CASP8_uc002uxt.1_Missense_Mutation_p.R307W|CASP8_uc002uxu.1_RNA|CASP8_uc002uxv.1_Missense_Mutation_p.R233W|CASP8_uc002uxw.1_Missense_Mutation_p.R233W|CASP8_uc002uxy.1_Missense_Mutation_p.R248W|CASP8_uc002uxx.1_Missense_Mutation_p.R233W|CASP8_uc010ftf.2_Intron|CASP8_uc010fte.1_Missense_Mutation_p.T108M	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor	248					activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						TGCAAAAGCACGGGAGAAAGT	0.373		NA								HNSCC(4;0.00038)			17	94					0	0	0	0
STRADB	55437	broad.mit.edu	37	2	202342454	202342454	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:202342454G>C	uc002uyd.3	+	8	1026	c.661G>C	c.(661-663)GAT>CAT	p.D221H		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	221	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						GGCTGTGTATGATTTCCCACA	0.522		NA											28	208					0	0	0	0
MAP2	4133	broad.mit.edu	37	2	210574652	210574652	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:210574652C>T	uc002vde.1	+	12	4995	c.4747C>T	c.(4747-4749)CGC>TGC	p.R1583C	MAP2_uc002vdd.1_Missense_Mutation_p.R284C|MAP2_uc002vdf.1_Missense_Mutation_p.R227C|MAP2_uc002vdg.1_Missense_Mutation_p.R227C|MAP2_uc002vdh.1_Missense_Mutation_p.R284C|MAP2_uc002vdi.1_Missense_Mutation_p.R1579C	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1583					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	AGAGCCAATTCGCAGAGCAGG	0.498		NA											14	116					0	0	0	0
CUL3	8452	broad.mit.edu	37	2	225365164	225365164	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:225365164G>A	uc002vny.2	-	11	1910	c.1526C>T	c.(1525-1527)ACG>ATG	p.T509M	CUL3_uc010zls.1_Missense_Mutation_p.T443M|CUL3_uc010fwy.1_Missense_Mutation_p.T515M|CUL3_uc002vnz.1_Translation_Start_Site	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	509					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		ATATCCTGTCGTGAGCACCCG	0.423		NA											11	194					0	0	0	0
DOCK10	55619	broad.mit.edu	37	2	225668859	225668859	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:225668859G>A	uc010fwz.1	-	39	4477	c.4238C>T	c.(4237-4239)TCC>TTC	p.S1413F	DOCK10_uc002vob.2_Missense_Mutation_p.S1407F|DOCK10_uc002voa.2_Missense_Mutation_p.S69F|DOCK10_uc002voc.2_Missense_Mutation_p.S267F	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1413							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TGTCTGGCAGGAAGGATTGGA	0.373		NA											5	66					0	0	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881385	228881385	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:228881385G>A	uc002vpq.2	-	7	4232	c.4185C>T	c.(4183-4185)AAC>AAT	p.N1395N	SPHKAP_uc002vpp.2_Silent_p.N1395N|SPHKAP_uc010zlx.1_Silent_p.N1395N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1395						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AAGGGCTGTGGTTTGTAAGAG	0.463		NA											23	188					0	0	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883163	228883163	+	Missense_Mutation	SNP	C	C	A	rs146520315	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:228883163C>A	uc002vpq.2	-	7	2454	c.2407G>T	c.(2407-2409)GGC>TGC	p.G803C	SPHKAP_uc002vpp.2_Missense_Mutation_p.G803C|SPHKAP_uc010zlx.1_Missense_Mutation_p.G803C	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	803						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTGAAGAGGCCTGGCCTCACT	0.463		NA											109	779					4.37e-48	4.85e-48	1	0
PRR21	643905	broad.mit.edu	37	2	240981426	240981426	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:240981426G>C	uc010zod.1	-	1	974	c.974C>G	c.(973-975)TCT>TGT	p.S325C		NM_001080835	NP_001074304	Q8WXC7	PRR21_HUMAN	proline rich 21	325										ovary(1)|skin(1)	2						CGTGGATGAAGAGGCATGGAC	0.597		NA											35	227					0	0	0	0
SLC4A11	83959	broad.mit.edu	37	20	3214613	3214613	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:3214613C>T	uc002wig.2	-	5	655	c.607G>A	c.(607-609)GCC>ACC	p.A203T	SLC4A11_uc010zqe.1_Missense_Mutation_p.A230T|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Missense_Mutation_p.A187T	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	203	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						GTCACTGTGGCGGTGACCCCT	0.647		NA											18	129					0	0	0	0
SLC23A2	9962	broad.mit.edu	37	20	4843461	4843461	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:4843461C>T	uc002wlg.1	-	14	1824	c.1449G>A	c.(1447-1449)CCG>CCA	p.P483P	SLC23A2_uc010zqr.1_Silent_p.P368P|SLC23A2_uc002wlh.1_Silent_p.P483P	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	483					L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						GCACAGGATCCGGAAGGGACG	0.557		NA											11	88					0	0	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20493692	20493692	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:20493692G>A	uc002wrz.2	-	32	4464	c.4321C>T	c.(4321-4323)CAG>TAG	p.Q1441*	RALGAPA2_uc010gcx.2_Nonsense_Mutation_p.Q1145*|RALGAPA2_uc010zsg.1_Nonsense_Mutation_p.Q889*|RALGAPA2_uc002wsa.1_Nonsense_Mutation_p.Q213*	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1441					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GTGGGTGTCTGAAGGTAGGAG	0.507		NA											5	38					0	0	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20493763	20493763	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:20493763G>A	uc002wrz.2	-	32	4393	c.4250C>T	c.(4249-4251)TCC>TTC	p.S1417F	RALGAPA2_uc010gcx.2_Missense_Mutation_p.S1121F|RALGAPA2_uc010zsg.1_Missense_Mutation_p.S865F|RALGAPA2_uc002wsa.1_Missense_Mutation_p.S189F	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1417					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						CACCTCAAAGGACAGCTCGGA	0.552		NA											4	48					0	0	0	0
EPB41L1	2036	broad.mit.edu	37	20	34809829	34809829	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:34809829T>A	uc002xfb.2	+	20	2654	c.2483T>A	c.(2482-2484)ATC>AAC	p.I828N	EPB41L1_uc002xeu.2_Missense_Mutation_p.I726N|EPB41L1_uc002xev.2_Missense_Mutation_p.I827N|EPB41L1_uc002xew.2_Missense_Mutation_p.I719N|EPB41L1_uc002xex.2_Missense_Mutation_p.I648N|EPB41L1_uc002xey.2_Missense_Mutation_p.I578N|EPB41L1_uc002xez.2_Missense_Mutation_p.I726N|EPB41L1_uc010gfq.2_Missense_Mutation_p.I926N	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	828	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					GAGAAGCGAATCATCATTACT	0.542		NA											11	70					0	0	0	0
DHX35	60625	broad.mit.edu	37	20	37634810	37634810	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:37634810G>A	uc002xjh.2	+	12	1044	c.1033G>A	c.(1033-1035)GCA>ACA	p.A345T	DHX35_uc010zwa.1_Missense_Mutation_p.A190T|DHX35_uc010zwb.1_Missense_Mutation_p.A190T|DHX35_uc010zwc.1_Missense_Mutation_p.A314T	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	345	Helicase C-terminal.					catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CACCAATGTGGCAGAAACCTC	0.408		NA											30	663					0	0	0	0
MAFB	9935	broad.mit.edu	37	20	39316607	39316607	+	Missense_Mutation	SNP	T	T	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:39316607T>G	uc002xji.2	-	1	1270	c.884A>C	c.(883-885)AAG>ACG	p.K295T		NM_005461	NP_005452	Q9Y5Q3	MAFB_HUMAN	transcription factor MAFB	295					negative regulation of erythrocyte differentiation		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0		Myeloproliferative disorder(115;0.00878)				GCACTTGACCTTGTAGGCGTC	0.597		NA	T	IGH@	MM								9	145					0	0	0	0
PI3	5266	broad.mit.edu	37	20	43804666	43804666	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:43804666C>T	uc002xng.2	+	2	268	c.244C>T	c.(244-246)CGG>TGG	p.R82W		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	82	WAP.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TATCTTGATCCGGTGCGCCAT	0.507		NA											9	102					0	0	0	0
SEMG2	6407	broad.mit.edu	37	20	43851591	43851591	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:43851591G>C	uc010ggz.2	+	2	1375	c.1318G>C	c.(1318-1320)GAG>CAG	p.E440Q	SEMG2_uc002xnk.2_Missense_Mutation_p.E440Q|SEMG2_uc002xnl.2_Intron	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	440	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				CCAAACTGAAGAGAAAATACA	0.378		NA											8	91					0	0	0	0
WFDC3	140686	broad.mit.edu	37	20	44404233	44404233	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:44404233C>T	uc002xpf.1	-	6	586	c.502G>A	c.(502-504)GGT>AGT	p.G168S	WFDC3_uc002xpj.1_RNA|WFDC3_uc002xph.1_RNA|WFDC3_uc010ghh.1_RNA	NM_080614	NP_542181	Q8IUB2	WFDC3_HUMAN	WAP four-disulfide core domain 3 precursor	168	WAP 4.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GGACAATCACCGCCCCGCCCT	0.532		NA											6	99					0	0	0	0
PREX1	57580	broad.mit.edu	37	20	47324916	47324916	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:47324916G>A	uc002xtw.1	-	6	688	c.665C>T	c.(664-666)GCG>GTG	p.A222V		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	222	DH.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			ACTCTGGACCGCGGGGTGGTC	0.582		NA											35	391					0	0	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48744600	48744600	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:48744600G>C	uc002xvf.2	-	5	764	c.603C>G	c.(601-603)CTC>CTG	p.L201L	TMEM189_uc010zyq.1_RNA|TMEM189_uc002xvg.2_Silent_p.L201L|TMEM189_uc010gif.2_Silent_p.L198L|TMEM189_uc010zyp.1_Silent_p.L126L	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	Error:Variant_position_missing_in_Q13404_after_alignment					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			AGTCCTGCAGGAGGGTGACCC	0.587		NA											12	52					0	0	0	0
ZNF217	7764	broad.mit.edu	37	20	52188284	52188284	+	Nonstop_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:52188284C>G	uc002xwq.3	-	4	3417	c.3146G>C	c.(3145-3147)TGA>TCA	p.*1049S		NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	1049					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			ATTAGTGAATCAAGTTTTTTT	0.328		NA											12	149					0	0	0	0
CDH26	60437	broad.mit.edu	37	20	58587630	58587630	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:58587630C>T	uc002ybe.2	+	18	2644	c.2344C>T	c.(2344-2346)CAC>TAC	p.H782Y	CDH26_uc002ybf.1_Intron|CDH26_uc010zzy.1_RNA|CDH26_uc002ybg.2_Missense_Mutation_p.H273Y|CDH26_uc002ybh.2_Missense_Mutation_p.H115Y|CDH26_uc002ybi.2_Missense_Mutation_p.H74Y	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	Error:Variant_position_missing_in_Q8IXH8_after_alignment					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			CTACCTACCTCACGTCTACAG	0.552		NA											19	180					0	0	0	0
CDH4	1002	broad.mit.edu	37	20	60508054	60508054	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:60508054C>T	uc002ybn.1	+	14	2265	c.2251C>T	c.(2251-2253)CTG>TTG	p.L751L	CDH4_uc002ybp.1_Silent_p.L677L	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	751	Helical; (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CATGGTCCTGCTGTTTGTCAT	0.592		NA											4	44					0	0	0	0
DIDO1	11083	broad.mit.edu	37	20	61511065	61511065	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:61511065C>G	uc002ydr.1	-	16	6507	c.6243G>C	c.(6241-6243)CAG>CAC	p.Q2081H	DIDO1_uc002yds.1_Missense_Mutation_p.Q2081H	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2081					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTTCGAAAGTCTGGTTTCTGT	0.677		NA											31	403					0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011396	46011396	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr21:46011396C>A	uc002zfm.2	-	1	991	c.970G>T	c.(970-972)GGT>TGT	p.G324C	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	324	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GCAGAGGCACCACAGGAGGGG	0.692		NA											13	110					4.37e-10	4.74e-10	1	0
MCM3AP	8888	broad.mit.edu	37	21	47666772	47666772	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr21:47666772G>A	uc002zir.1	-	21	4355	c.4319C>T	c.(4318-4320)GCC>GTC	p.A1440V	MCM3APAS_uc002zim.2_Intron|MCM3APAS_uc002zin.2_Intron|MCM3AP_uc002zio.1_5'UTR|MCM3AP_uc002zip.1_Missense_Mutation_p.A181V|MCM3AP_uc002ziq.1_Missense_Mutation_p.A367V|MCM3APAS_uc002zis.1_Intron	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1440					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					AGCATCAATGGCACCATCACT	0.577		NA											16	197					0	0	0	0
ZNF74	7625	broad.mit.edu	37	22	20761221	20761221	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr22:20761221G>A	uc010gsm.2	+	6	2110	c.1898G>A	c.(1897-1899)GGC>GAC	p.G633D	ZNF74_uc002zsg.2_Missense_Mutation_p.G562D|ZNF74_uc002zsh.2_Missense_Mutation_p.G633D|ZNF74_uc002zsi.2_Missense_Mutation_p.G562D|ZNF74_uc010gsn.2_Missense_Mutation_p.G562D	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	633					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CCCAGAGCTGGCAGGAATTTC	0.458		NA											8	59					0	0	0	0
CACNA1I	8911	broad.mit.edu	37	22	40075794	40075794	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr22:40075794T>C	uc003ayc.2	+	33	5462	c.5462T>C	c.(5461-5463)ATC>ACC	p.I1821T	CACNA1I_uc003ayd.2_Missense_Mutation_p.I1786T|CACNA1I_uc003aye.2_Missense_Mutation_p.I1736T|CACNA1I_uc003ayf.2_Missense_Mutation_p.I1701T	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1821	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CTGACCATCATCGACAACCTG	0.617		NA											3	23					0	0	0	0
MEI1	150365	broad.mit.edu	37	22	42154484	42154484	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr22:42154484G>A	uc003baz.1	+	18	2092	c.2067G>A	c.(2065-2067)CAG>CAA	p.Q689Q	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Silent_p.Q57Q|MEI1_uc003bbc.1_Silent_p.Q57Q|MEI1_uc010gym.1_Silent_p.Q57Q|MEI1_uc003bbd.1_5'UTR	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	689							binding			central_nervous_system(1)|skin(1)	2						CTGCTCGCCAGAGACAGTACT	0.582		NA											6	44					0	0	0	0
EFCAB6	64800	broad.mit.edu	37	22	43985982	43985982	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr22:43985982C>T	uc003bdy.1	-	24	3219	c.3004G>A	c.(3004-3006)GAA>AAA	p.E1002K	EFCAB6_uc003bdz.1_Missense_Mutation_p.E850K|EFCAB6_uc010gzi.1_Missense_Mutation_p.E850K|EFCAB6_uc010gzj.1_Missense_Mutation_p.E228K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1002					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AGCTCCCCTTCGGTAAGAGAA	0.408		NA											22	193					0	0	0	0
SELO	83642	broad.mit.edu	37	22	50647025	50647025	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr22:50647025C>T	uc011arr.1	+	3	877	c.819C>T	c.(817-819)AGC>AGT	p.S273S	SELO_uc010hap.2_Silent_p.S84S|SELO_uc003bjy.2_5'UTR|SELO_uc003bjz.2_5'Flank	NM_031454	NP_113642	Q9BVL4	SELO_HUMAN	selenoprotein O	273											0		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		CAGGCCCCAGCGTGGGGAGGA	0.567		NA											14	158					0	0	0	0
SELO	83642	broad.mit.edu	37	22	50654267	50654267	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr22:50654267G>A	uc011arr.1	+	6	1531	c.1473G>A	c.(1471-1473)AGG>AGA	p.R491R	SELO_uc010hap.2_Silent_p.R302R|SELO_uc003bjy.2_Silent_p.R171R|SELO_uc003bjz.2_Missense_Mutation_p.A244T	NM_031454	NP_113642	Q9BVL4	SELO_HUMAN	selenoprotein O	491											0		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		AGGAGCTGAGGCTGGCCTTCC	0.572		NA											10	124					0	0	0	0
EDEM1	9695	broad.mit.edu	37	3	5249942	5249942	+	Silent	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:5249942C>G	uc003bqi.2	+	8	1635	c.1503C>G	c.(1501-1503)CTC>CTG	p.L501L	EDEM1_uc011asz.1_Silent_p.L279L|EDEM1_uc003bqh.2_Silent_p.L501L	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	501	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		CATATCTCCTCTACCAGGTAC	0.463		NA											7	140					0	0	0	0
C3orf24	115795	broad.mit.edu	37	3	10146171	10146171	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:10146171G>A	uc003buz.2	-	2	513	c.288C>T	c.(286-288)CTC>CTT	p.L96L	C3orf24_uc003bva.1_Silent_p.L96L	NM_173472	NP_775743	Q96PS1	CC024_HUMAN	hypothetical protein LOC115795	96											0				OV - Ovarian serous cystadenocarcinoma(96;0.196)		CTACTCCACTGAGGCGGATGG	0.517		NA											14	129					0	0	0	0
HRH1	3269	broad.mit.edu	37	3	11302128	11302128	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:11302128C>T	uc010hdr.2	+	2	1747	c.1405C>T	c.(1405-1407)CCC>TCC	p.P469S	HRH1_uc010hds.2_Missense_Mutation_p.P469S|HRH1_uc010hdt.2_Missense_Mutation_p.P469S|HRH1_uc003bwb.3_Missense_Mutation_p.P469S	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	469	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	CCTCATCTACCCCTTGTGCAA	0.458		NA											29	294					0	0	0	0
STT3B	201595	broad.mit.edu	37	3	31665334	31665334	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:31665334G>A	uc011axe.1	+	11	1708	c.1708G>A	c.(1708-1710)GCC>ACC	p.A570T		NM_178862	NP_849193	Q8TCJ2	STT3B_HUMAN	source of immunodominant MHC-associated	570					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0						TGTAGTCCTGGCCTCATACAA	0.373		NA											14	117					0	0	0	0
ZNF860	344787	broad.mit.edu	37	3	32030595	32030595	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:32030595G>C	uc011axg.1	+	2	573	c.24G>C	c.(22-24)CAG>CAC	p.Q8H		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AAGCAGCTCAGAAGAGGAAAG	0.448		NA											10	104					0	0	0	0
TMPPE	643853	broad.mit.edu	37	3	33135566	33135566	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:33135566C>T	uc003cfk.2	-	2	313	c.122G>A	c.(121-123)CGT>CAT	p.R41H	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Intron	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	41						integral to membrane	metal ion binding				0						AAGCAGCCAACGCCAGGCCCT	0.602		NA											6	63					0	0	0	0
MLH1	4292	broad.mit.edu	37	3	37059048	37059048	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:37059048C>T	uc003cgl.2	+	10	902	c.842C>T	c.(841-843)GCA>GTA	p.A281V	MLH1_uc011aye.1_Missense_Mutation_p.A40V|MLH1_uc011ayb.1_Missense_Mutation_p.A40V|MLH1_uc010hge.2_Missense_Mutation_p.A281V|MLH1_uc003cgn.3_Missense_Mutation_p.A40V|MLH1_uc011ayc.1_Missense_Mutation_p.A183V|MLH1_uc011ayd.1_Missense_Mutation_p.A40V|MLH1_uc003cgo.2_Missense_Mutation_p.A40V|MLH1_uc010hgg.1_Intron|MLH1_uc010hgh.1_Intron|MLH1_uc010hgi.1_5'UTR|MLH1_uc010hgj.1_Intron|MLH1_uc010hgk.2_Intron|MLH1_uc010hgl.1_5'UTR	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	281			Missing (in HNPCC2).		mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						ACAGTGTATGCAGCCTATTTG	0.428		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				21	153					0	0	0	0
RTP3	83597	broad.mit.edu	37	3	46542332	46542332	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:46542332C>G	uc003cps.1	+	2	710	c.642C>G	c.(640-642)TTC>TTG	p.F214L		NM_031440	NP_113628	Q9BQQ7	RTP3_HUMAN	transmembrane protein 7	214	Helical; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste|protein targeting to membrane	cytoplasm|integral to membrane	protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TAAGCATTTTCTGCTGTTGTG	0.328		NA											12	173					0	0	0	0
PTPN23	25930	broad.mit.edu	37	3	47448072	47448072	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:47448072G>A	uc003crf.1	+	8	825	c.729G>A	c.(727-729)ATG>ATA	p.M243I	PTPN23_uc011baw.1_Missense_Mutation_p.M208I|PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Missense_Mutation_p.M113I	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	243	BRO1.				cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TTGTGCAGATGAAGATCTACT	0.617		NA											5	66					0	0	0	0
AMT	275	broad.mit.edu	37	3	49455119	49455119	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:49455119G>A	uc003cww.2	-	9	1195	c.1066C>T	c.(1066-1068)CTG>TTG	p.L356L	AMT_uc011bcn.1_3'UTR|AMT_uc003cwx.2_Silent_p.L356L|AMT_uc011bco.1_Silent_p.L312L|AMT_uc003cwy.2_Silent_p.L308L|AMT_uc011bcp.1_Silent_p.L259L|AMT_uc011bcq.1_Silent_p.L300L	NM_000481	NP_000472	P48728	GCST_HUMAN	aminomethyltransferase isoform 1 precursor	356					glycine catabolic process	mitochondrion	aminomethyltransferase activity|transaminase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	TTCTTCTTCAGAGAGGGGGAG	0.592		NA											11	123					0	0	0	0
BSN	8927	broad.mit.edu	37	3	49698774	49698774	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:49698774A>G	uc003cxe.3	+	6	9610	c.9496A>G	c.(9496-9498)AGC>GGC	p.S3166G		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3166					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGTGATCGCCAGCCCCGTTGT	0.627		NA											7	83					0	0	0	0
RBM6	10180	broad.mit.edu	37	3	50006080	50006080	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:50006080G>A	uc003cyc.2	+	3	1355	c.1222G>A	c.(1222-1224)GAT>AAT	p.D408N	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	408					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		GGAGTACCGTGATGTGGATCA	0.522		NA											10	73					0	0	0	0
RBM6	10180	broad.mit.edu	37	3	50006127	50006127	+	Missense_Mutation	SNP	G	G	T	rs147351457		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:50006127G>T	uc003cyc.2	+	3	1402	c.1269G>T	c.(1267-1269)CAG>CAT	p.Q423H	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	423					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		GCTATGGCCAGAGCAAGTCTT	0.473		NA											8	61					5.49e-09	5.91e-09	1	0
NISCH	11188	broad.mit.edu	37	3	52522252	52522252	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:52522252A>G	uc011beg.1	+	17	2816	c.2744A>G	c.(2743-2745)CAG>CGG	p.Q915R	NISCH_uc003ded.3_Missense_Mutation_p.Q915R|NISCH_uc003dee.3_Missense_Mutation_p.Q404R|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	915					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CTCACGCCCCAGCACCTCAAC	0.652		NA											7	64					0	0	0	0
LRTM1	57408	broad.mit.edu	37	3	54958711	54958711	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:54958711T>C	uc003dhl.2	-	2	673	c.539A>G	c.(538-540)AAC>AGC	p.N180S	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	180	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TTTCCAGAGGTTGTCCTTGAG	0.463		NA											19	206					0	0	0	0
WNT5A	7474	broad.mit.edu	37	3	55504433	55504433	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:55504433C>A	uc003dhn.2	-	5	1148	c.830G>T	c.(829-831)CGG>CTG	p.R277L	WNT5A_uc003dhm.2_Missense_Mutation_p.R262L|WNT5A_uc010hmw.2_Missense_Mutation_p.R262L|WNT5A_uc010hmx.2_Missense_Mutation_p.R188L	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	277					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		GCTGTTGAGCCGCATGGCCGC	0.612		NA											4	14					0.00909568	0.00921004	1	0
FAM116A	201627	broad.mit.edu	37	3	57613942	57613942	+	Nonstop_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:57613942C>G	uc003dja.2	-	20	1897	c.1826G>C	c.(1825-1827)TGA>TCA	p.*609S		NM_152678	NP_689891	Q8IWF6	F116A_HUMAN	hypothetical protein LOC201627	609										pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(55;0.000621)|KIRC - Kidney renal clear cell carcinoma(284;0.0485)|Kidney(284;0.0607)		TGGCAAATATCATGTCATGCC	0.438		NA											17	206					0	0	0	0
SHQ1	55164	broad.mit.edu	37	3	72799729	72799729	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:72799729G>A	uc003dpf.2	-	11	1547	c.1440C>T	c.(1438-1440)CTC>CTT	p.L480L	SHQ1_uc010hod.2_Silent_p.L391L	NM_018130	NP_060600	Q6PI26	SHQ1_HUMAN	SHQ1 homolog	480	Ser-rich.				ribonucleoprotein complex assembly	cytosol|nucleoplasm	protein binding			ovary(2)|large_intestine(1)	3		Prostate(10;0.00482)|Lung NSC(201;0.0339)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;9.68e-05)|Epithelial(33;0.000563)|LUSC - Lung squamous cell carcinoma(21;0.00229)|Lung(16;0.00688)|KIRC - Kidney renal clear cell carcinoma(39;0.018)|Kidney(39;0.0213)		GACTATCTTTGAGTTCATCTT	0.468		NA											11	131					0	0	0	0
GXYLT2	727936	broad.mit.edu	37	3	73004381	73004381	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:73004381G>C	uc003dpg.2	+	4	733	c.733G>C	c.(733-735)GAA>CAA	p.E245Q		NM_001080393	NP_001073862	A0PJZ3	GXLT2_HUMAN	glycosyltransferase 8 domain containing 4	245	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						CCCTGAGCACGAAATCCCCAA	0.493		NA											6	51					0	0	0	0
STXBP5L	9515	broad.mit.edu	37	3	120977960	120977960	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:120977960G>C	uc003eec.3	+	18	2043	c.1903G>C	c.(1903-1905)GAT>CAT	p.D635H	STXBP5L_uc011bji.1_Missense_Mutation_p.D635H	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	635					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GGTGTGGGTAGATGGTGAACC	0.348		NA											8	113					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124397074	124397074	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:124397074C>T	uc003ehg.2	+	50	7358	c.7231C>T	c.(7231-7233)CGG>TGG	p.R2411W	KALRN_uc003ehk.2_Missense_Mutation_p.R714W	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2410					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CATGAGAAAGCGGGCGGAAGT	0.483		NA											14	148					0	0	0	0
SLC12A8	84561	broad.mit.edu	37	3	124839464	124839464	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:124839464G>A	uc003ehv.3	-	7	914	c.803C>T	c.(802-804)TCC>TTC	p.S268F	SLC12A8_uc003ehw.3_Missense_Mutation_p.S297F|SLC12A8_uc010hrz.1_Missense_Mutation_p.S133F|SLC12A8_uc003eht.3_Missense_Mutation_p.S69F|SLC12A8_uc003ehu.3_Missense_Mutation_p.S21F|SLC12A8_uc010hry.2_Missense_Mutation_p.S21F	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	268	Helical; (Potential).				potassium ion transport	integral to membrane	symporter activity				0						AGCTGCCAGGGAGCCCGGGGG	0.597		NA											4	35					0	0	0	0
EEFSEC	60678	broad.mit.edu	37	3	128060436	128060436	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:128060436G>T	uc003eki.2	+	5	1185	c.1147G>T	c.(1147-1149)GAT>TAT	p.D383Y	EEFSEC_uc003ekj.2_Missense_Mutation_p.D328Y	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	383						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						CCTGTCCAAGGATTTGACACC	0.532		NA											15	83					7.93e-07	8.38e-07	1	0
GATA2	2624	broad.mit.edu	37	3	128204941	128204941	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:128204941C>T	uc003ekm.3	-	4	935	c.500G>A	c.(499-501)GGC>GAC	p.G167D	GATA2_uc003ekn.3_Missense_Mutation_p.G167D|GATA2_uc003eko.2_Missense_Mutation_p.G167D	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	167					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		AAGGTGGGAGCCAGAGTGGGC	0.682		NA	Mis		AML(CML blast transformation)								5	24					0	0	0	0
TRIM42	287015	broad.mit.edu	37	3	140401600	140401600	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:140401600G>A	uc003eto.1	+	2	829	c.638G>A	c.(637-639)CGT>CAT	p.R213H		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	213						intracellular	zinc ion binding	p.R213H(1)		lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CTGCACGGGCGTCTCACCAAG	0.612		NA											9	169					0	0	0	0
ZIC1	7545	broad.mit.edu	37	3	147128155	147128155	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:147128155G>A	uc003ewe.2	+	1	975	c.256G>A	c.(256-258)GTC>ATC	p.V86I		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	86					behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CCCGGGCCACGTCGGCTCCTA	0.697		NA											4	42					0	0	0	0
NMD3	51068	broad.mit.edu	37	3	160968692	160968692	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:160968692G>C	uc003feb.1	+	16	1625	c.1506G>C	c.(1504-1506)CTG>CTC	p.L502L	NMD3_uc003fec.2_Intron|NMD3_uc003fed.1_Silent_p.L502L	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	502	Necessary for the nuclear export of the 60S ribosomal subunit.				protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			CATCAATGCTGACATAATGAG	0.433		NA											8	170					0	0	0	0
ECT2	1894	broad.mit.edu	37	3	172534484	172534484	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:172534484A>G	uc003fii.2	+	23	2557	c.2419A>G	c.(2419-2421)ACA>GCA	p.T807A	ECT2_uc003fih.2_Missense_Mutation_p.T806A|ECT2_uc003fij.1_Missense_Mutation_p.T807A|ECT2_uc003fik.1_Missense_Mutation_p.T807A|ECT2_uc003fil.1_Missense_Mutation_p.T838A|ECT2_uc003fim.1_Missense_Mutation_p.T106A	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	807					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			ACTCTAGGTTACAAGAGCATT	0.368		NA											11	66					0	0	0	0
SPATA16	83893	broad.mit.edu	37	3	172642075	172642075	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:172642075C>G	uc003fin.3	-	8	1419	c.1261G>C	c.(1261-1263)GAT>CAT	p.D421H		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	421					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CTCACTGTATCTTCTCTGGTC	0.328		NA											9	199					0	0	0	0
MFN1	55669	broad.mit.edu	37	3	179096140	179096140	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:179096140G>A	uc003fjs.2	+	13	1467	c.1341G>A	c.(1339-1341)AAG>AAA	p.K447K	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Silent_p.K475K|MFN1_uc010hxc.2_Intron	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	447	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			AATTAAATAAGCACATAGAGG	0.318		NA											12	79					0	0	0	0
MASP1	5648	broad.mit.edu	37	3	186943271	186943271	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:186943271C>T	uc003frh.1	-	13	1914	c.1582G>A	c.(1582-1584)GAA>AAA	p.E528K		NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	528	Peptidase S1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		TGTTCATTTTCATCTGACCGG	0.542		NA											24	265					0	0	0	0
LRCH3	84859	broad.mit.edu	37	3	197579467	197579467	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:197579467G>A	uc011bul.1	+	13	1571	c.1566G>A	c.(1564-1566)CCG>CCA	p.P522P	LRCH3_uc003fyj.1_Silent_p.P522P|LRCH3_uc011bum.1_Silent_p.P494P|LRCH3_uc011bun.1_Silent_p.P368P|LRCH3_uc003fyk.2_Silent_p.P117P	NM_032773	NP_116162	Q96II8	LRCH3_HUMAN	leucine-rich repeats and calponin homology (CH)	522						extracellular region				ovary(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;4.82e-24)|all cancers(36;3.61e-22)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.119)		AACAGCACCCGCTCCTAGATG	0.388		NA											10	190					0	0	0	0
ZNF721	170960	broad.mit.edu	37	4	437477	437477	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:437477G>A	uc003gag.2	-	3	1470	c.779C>T	c.(778-780)TCA>TTA	p.S260L	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.S292L|ZNF721_uc010ibe.2_Missense_Mutation_p.S248L	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	260						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCTTGAGGATGAGGAAATGAC	0.378		NA											9	87					0	0	0	0
TACC3	10460	broad.mit.edu	37	4	1729444	1729444	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:1729444C>T	uc003gdo.2	+	4	423	c.315C>T	c.(313-315)CTC>CTT	p.L105L	TACC3_uc010ibz.2_Silent_p.L105L|TACC3_uc003gdp.2_Intron	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	105						centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			GCCAACAGCTCATCAAGGAAG	0.413		NA											62	517					0	0	0	0
MRFAP1L1	114932	broad.mit.edu	37	4	6711296	6711296	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:6711296C>G	uc003gjn.2	-	1	301	c.61G>C	c.(61-63)GAG>CAG	p.E21Q	MRFAP1L1_uc003gjo.2_Missense_Mutation_p.E21Q	NM_203462	NP_982287	Q96HT8	MR1L1_HUMAN	Morf4 family associated protein 1-like 1	21											0						AAATCCTCCTCGGGCTCCAGC	0.637		NA											7	96					0	0	0	0
DRD5	1816	broad.mit.edu	37	4	9784345	9784345	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:9784345T>C	uc003gmb.3	+	1	1088	c.692T>C	c.(691-693)CTC>CCC	p.L231P		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	231	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	TCTTCCTCGCTCATCAGCTTC	0.582		NA											10	93					0	0	0	0
TBC1D1	23216	broad.mit.edu	37	4	38016216	38016216	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:38016216G>A	uc003gtb.2	+	3	847	c.504G>A	c.(502-504)ACG>ACA	p.T168T	TBC1D1_uc011byd.1_Silent_p.T168T|TBC1D1_uc010ifd.2_Intron|TBC1D1_uc011byf.1_Silent_p.T39T	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	168						nucleus	Rab GTPase activator activity			ovary(1)	1						TCGACGACACGTTTTCCAAGA	0.617		NA											29	228					0	0	0	0
C4orf14	84273	broad.mit.edu	37	4	57843646	57843646	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:57843646A>G	uc003hck.2	-	1	181	c.106T>C	c.(106-108)TGC>CGC	p.C36R	POLR2B_uc003hcl.1_5'Flank|POLR2B_uc011cae.1_5'Flank|POLR2B_uc011caf.1_5'Flank	NM_032313	NP_115689	Q8NC60	CD014_HUMAN	hypothetical protein LOC84273	36							GTP binding			ovary(1)|breast(1)	2	Glioma(25;0.08)|all_neural(26;0.181)					GCGGCAGCGCACCTCCTCTCC	0.657		NA											6	32					0	0	0	0
ANKRD56	345079	broad.mit.edu	37	4	77817771	77817771	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:77817771C>A	uc003hki.2	-	1	1232	c.1232G>T	c.(1231-1233)GGG>GTG	p.G411V		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	411											0						GTCTTTGGGCCCACTGCTGCT	0.567		NA											23	204					3.1e-05	3.25e-05	1	0
HERC6	55008	broad.mit.edu	37	4	89349789	89349789	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:89349789G>A	uc011cdi.1	+	16	2176	c.1993G>A	c.(1993-1995)GAA>AAA	p.E665K	HERC6_uc011cdj.1_Missense_Mutation_p.E629K|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	665					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		AAAAAAGGATGAATTTCCTCC	0.378		NA											5	29					0	0	0	0
H2AFZ	3015	broad.mit.edu	37	4	100869668	100869668	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:100869668T>C	uc003hvo.1	-	5	523	c.338A>G	c.(337-339)CAC>CGC	p.H113R	DNAJB14_uc003hvl.2_5'Flank|DNAJB14_uc010ili.2_5'Flank|DNAJB14_uc003hvm.2_5'Flank|H2AFZ_uc003hvn.1_3'UTR|LOC256880_uc003hvp.1_5'Flank	NM_002106	NP_002097	P0C0S5	H2AZ_HUMAN	H2A histone family, member Z	113					nucleosome assembly	nucleosome|nucleus	DNA binding				0				OV - Ovarian serous cystadenocarcinoma(123;2.32e-08)		TTTGTGGATGTGTGGAATGAC	0.368		NA											12	117					0	0	0	0
CENPE	1062	broad.mit.edu	37	4	104057410	104057410	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:104057410C>T	uc003hxb.1	-	40	6500	c.6410G>A	c.(6409-6411)AGA>AAA	p.R2137K	CENPE_uc003hxc.1_Missense_Mutation_p.R2016K	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2137	Kinetochore-binding domain.|Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TGCTTTAACTCTCATTGAAAG	0.363		NA											16	159					0	0	0	0
PDE5A	8654	broad.mit.edu	37	4	120442176	120442176	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:120442176G>A	uc003idh.2	-	13	1974	c.1819C>T	c.(1819-1821)CGG>TGG	p.R607W	uc003ide.3_Intron|PDE5A_uc003idf.2_Missense_Mutation_p.R565W|PDE5A_uc003idg.2_Missense_Mutation_p.R555W|uc003idi.3_Intron	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	607	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	ACATTCTTCCGATAATTCTTC	0.299		NA											14	245					0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126336687	126336687	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:126336687G>A	uc003ifj.3	+	5	6569	c.6569G>A	c.(6568-6570)CGC>CAC	p.R2190H	FAT4_uc011cgp.1_Missense_Mutation_p.R488H	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2190	Cadherin 21.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGACAGGTTCGCTATGGCATT	0.413		NA											15	178					0	0	0	0
LARP1B	55132	broad.mit.edu	37	4	129043274	129043274	+	Silent	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:129043274T>C	uc003iga.2	+	11	1586	c.1455T>C	c.(1453-1455)AAT>AAC	p.N485N	LARP1B_uc003igc.2_5'UTR|LARP1B_uc003ifz.1_Silent_p.N485N|LARP1B_uc003igb.1_Silent_p.N200N	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	485							RNA binding				0						AAGTTATCAATGATGGCTTAT	0.403		NA											20	154					0	0	0	0
MAML3	55534	broad.mit.edu	37	4	140641384	140641384	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:140641384C>G	uc003ihz.1	-	7	3247	c.2495G>C	c.(2494-2496)GGA>GCA	p.G832A	MGST2_uc010ioi.1_Intron|MAML3_uc011chd.1_Missense_Mutation_p.G300A	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	833	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GGGTCCTATTCCCATCATGCC	0.607		NA											14	277					0	0	0	0
SMARCA5	8467	broad.mit.edu	37	4	144459762	144459762	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:144459762C>T	uc003ijg.2	+	12	1977	c.1515C>T	c.(1513-1515)TTC>TTT	p.F505F		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	505	Helicase C-terminal.				CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					TACTAATCTTCAGTCAAATGA	0.373		NA											18	198					0	0	0	0
KIAA0922	23240	broad.mit.edu	37	4	154517420	154517420	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:154517420C>T	uc003inm.3	+	20	2055	c.2003C>T	c.(2002-2004)TCT>TTT	p.S668F	KIAA0922_uc010ipp.2_Missense_Mutation_p.S669F|KIAA0922_uc010ipq.2_Missense_Mutation_p.S437F	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	668	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				GGTACGCATTCTGAGGAATCC	0.418		NA											18	232					0	0	0	0
TKTL2	84076	broad.mit.edu	37	4	164394865	164394865	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:164394865G>A	uc003iqp.3	-	1	183	c.22C>T	c.(22-24)CCC>TCC	p.P8S		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	8						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TTCACGTCGGGCTTGGCGTCG	0.637		NA											6	38					0	0	0	0
VEGFC	7424	broad.mit.edu	37	4	177650751	177650751	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:177650751G>C	uc003ius.1	-	2	727	c.297C>G	c.(295-297)CTC>CTG	p.L99L		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	99					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		TCCTTGAGTTGAGGTTGGCCT	0.373		NA											7	122					0	0	0	0
STOX2	56977	broad.mit.edu	37	4	184930441	184930441	+	Silent	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:184930441C>G	uc003ivz.1	+	3	1885	c.450C>G	c.(448-450)CTC>CTG	p.L150L	STOX2_uc003iwa.1_5'UTR	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	150					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		CTCCTTCCCTCATAAGAACTA	0.532		NA											10	68					0	0	0	0
PDLIM3	27295	broad.mit.edu	37	4	186425655	186425655	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:186425655G>A	uc003ixw.3	-	7	1003	c.879C>T	c.(877-879)CTC>CTT	p.L293L	PDLIM3_uc003ixx.3_Silent_p.L245L|PDLIM3_uc010isi.2_RNA	NM_014476	NP_055291	Q53GG5	PDLI3_HUMAN	PDZ and LIM domain protein 3 isoform a	293	LIM zinc-binding.					sarcomere	zinc ion binding			ovary(2)	2		all_lung(41;1.03e-13)|Lung NSC(41;2.49e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.00996)|Colorectal(36;0.0161)|all_hematologic(60;0.0592)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.4e-10)|BRCA - Breast invasive adenocarcinoma(30;8.64e-05)|GBM - Glioblastoma multiforme(59;0.000167)|STAD - Stomach adenocarcinoma(60;0.000828)|LUSC - Lung squamous cell carcinoma(40;0.00984)|COAD - Colon adenocarcinoma(29;0.0115)|READ - Rectum adenocarcinoma(43;0.171)		ATTTGTCACAGAGCGGCATCC	0.502		NA											5	59					0	0	0	0
MARCH6	10299	broad.mit.edu	37	5	10405790	10405790	+	Splice_Site	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:10405790G>A	uc003jet.1	+	16	1635	c.1452_splice	c.e16+1	p.V484_splice	MARCH6_uc011cmu.1_Splice_Site_p.V436_splice|MARCH6_uc003jeu.1_Splice_Site_p.V182_splice|MARCH6_uc011cmv.1_Splice_Site_p.V379_splice	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6						protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TTTGTCAGTGGTAAGAAGATG	0.328		NA											6	99					0	0	0	0
MYO10	4651	broad.mit.edu	37	5	16694554	16694554	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:16694554G>A	uc003jft.3	-	27	4194	c.3726C>T	c.(3724-3726)CGC>CGT	p.R1242R	MYO10_uc011cnc.1_Silent_p.R121R|MYO10_uc011cnd.1_Silent_p.R599R|MYO10_uc011cne.1_Silent_p.R599R|MYO10_uc010itx.2_Silent_p.R865R	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1242	PH 1.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						GCTTGGACTGGCGGAGGACAA	0.572		NA											21	195					0	0	0	0
CDH9	1007	broad.mit.edu	37	5	26906877	26906877	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:26906877G>C	uc003jgs.1	-	4	763	c.594C>G	c.(592-594)GTC>GTG	p.V198V	CDH9_uc010iug.2_Silent_p.V198V	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	198	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ATATGCTATAGACCACTTTGG	0.398		NA											9	80					0	0	0	0
EGFLAM	133584	broad.mit.edu	37	5	38427202	38427202	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:38427202C>T	uc003jlc.1	+	14	2226	c.1902C>T	c.(1900-1902)TTC>TTT	p.F634F	EGFLAM_uc003jlb.1_Silent_p.F634F|EGFLAM_uc003jle.1_Silent_p.F400F|EGFLAM_uc003jlf.1_5'UTR	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	634	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ACCTTTCCTTCATGGAATTTG	0.493		NA											25	193					0	0	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41019061	41019061	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:41019061C>T	uc003jmj.3	-	25	2991	c.2501G>A	c.(2500-2502)CGG>CAG	p.R834Q	HEATR7B2_uc003jmi.3_Missense_Mutation_p.R389Q	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	834							binding			ovary(6)|central_nervous_system(2)	8						CAGCAGCCTCCGAATATTCTC	0.458		NA											9	47					0	0	0	0
HCN1	348980	broad.mit.edu	37	5	45262736	45262736	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:45262736T>C	uc003jok.2	-	8	1985	c.1960A>G	c.(1960-1962)ACG>GCG	p.T654A		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	654	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GTCGGGGTCGTAGTAGACGAT	0.537		NA											21	146					0	0	0	0
VCAN	1462	broad.mit.edu	37	5	82843897	82843897	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:82843897G>A	uc003kii.3	+	10	9843	c.9487G>A	c.(9487-9489)GAG>AAG	p.E3163K	VCAN_uc003kij.3_Missense_Mutation_p.E2176K|VCAN_uc010jau.2_Missense_Mutation_p.E1409K|VCAN_uc003kik.3_Missense_Mutation_p.E422K|VCAN_uc003kil.3_Missense_Mutation_p.E1827K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3163	EGF-like 2; calcium-binding (Potential).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TGCACTTTGTGAGCAAGGTAA	0.388		NA											10	110					0	0	0	0
FBN2	2201	broad.mit.edu	37	5	127670419	127670419	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:127670419C>T	uc003kuu.2	-	31	4530	c.4091G>A	c.(4090-4092)GGA>GAA	p.G1364E	FBN2_uc003kuv.2_Missense_Mutation_p.G1331E	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1364	EGF-like 21; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		ACCTGTACATCCTGTGGTCCC	0.428		NA											9	162					0	0	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130782325	130782325	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:130782325C>T	uc003kvn.1	-	22	3478	c.3272G>A	c.(3271-3273)CGC>CAC	p.R1091H	RAPGEF6_uc003kvp.1_Missense_Mutation_p.R1141H|RAPGEF6_uc003kvo.1_Missense_Mutation_p.R1104H|RAPGEF6_uc010jdi.1_Missense_Mutation_p.R1099H|RAPGEF6_uc010jdj.1_Missense_Mutation_p.R1099H|RAPGEF6_uc003kvq.2_Missense_Mutation_p.R816H|RAPGEF6_uc003kvr.2_Missense_Mutation_p.R1091H|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc003kvm.1_Missense_Mutation_p.R14H	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1091					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		AGAGCTGCGGCGTGCCCTTTT	0.453		NA											31	270					0	0	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256838	140256838	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:140256838T>C	uc003lic.2	+	1	1908	c.1781T>C	c.(1780-1782)GTG>GCG	p.V594A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.V594A	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	594	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGCGAAAGTGCGCGCGGTG	0.692		NA											10	92					0	0	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604569	140604569	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:140604569C>A	uc003ljb.2	+	1	1492	c.1492C>A	c.(1492-1494)CTG>ATG	p.L498M	PCDHB14_uc011dal.1_Missense_Mutation_p.L345M	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	498	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGACCGGCACCTGCCCCTCGC	0.652		NA											25	162					7.34e-06	7.72e-06	1	0
PCDHGB1	56104	broad.mit.edu	37	5	140731194	140731194	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:140731194A>G	uc003ljo.1	+	1	1367	c.1367A>G	c.(1366-1368)CAC>CGC	p.H456R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Missense_Mutation_p.H456R	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	456	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATGTGGTCCACGTGTCTGAG	0.562		NA											6	68					0	0	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140744135	140744135	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:140744135C>T	uc003lju.1	+	1	238	c.238C>T	c.(238-240)CGA>TGA	p.R80*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Nonsense_Mutation_p.R80*	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	80	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGAACCCGCGAAGCGGCAG	0.607		NA											13	115					0	0	0	0
DIAPH1	1729	broad.mit.edu	37	5	140962827	140962827	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:140962827G>A	uc003llb.3	-	6	707	c.566C>T	c.(565-567)GCC>GTC	p.A189V	DIAPH1_uc003llc.3_Missense_Mutation_p.A180V	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	189	GBD/FH3.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAATAAGGAGGCCAAGCCTTC	0.413		NA											14	295					0	0	0	0
CPEB4	80315	broad.mit.edu	37	5	173380196	173380196	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:173380196C>T	uc003mcs.3	+	9	3289	c.1883C>T	c.(1882-1884)GCG>GTG	p.A628V	CPEB4_uc010jju.1_Missense_Mutation_p.A603V|CPEB4_uc010jjv.2_Missense_Mutation_p.A611V|CPEB4_uc011dfg.1_Missense_Mutation_p.A603V|CPEB4_uc003mct.3_Missense_Mutation_p.A238V|CPEB4_uc003mcu.3_Missense_Mutation_p.A221V	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	628	RRM 2.						nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GGGAGAGTTGCGTTCTCTAAT	0.463		NA											18	206					0	0	0	0
GNB2L1	10399	broad.mit.edu	37	5	180666085	180666085	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:180666085G>A	uc003mni.1	-	5	724	c.618C>T	c.(616-618)CTC>CTT	p.L206L	GNB2L1_uc003mnh.1_Silent_p.L165L|GNB2L1_uc003mnk.1_Silent_p.L128L|GNB2L1_uc003mnj.1_Silent_p.L160L|GNB2L1_uc003mnl.1_5'UTR|GNB2L1_uc011dhk.1_Silent_p.L206L|GNB2L1_uc010jls.2_3'UTR	NM_006098	NP_006089	P63244	GBLP_HUMAN	guanine nucleotide binding protein (G protein),	206	WD 5.				apoptosis|cell cycle|gastrulation|interspecies interaction between organisms|negative regulation of cell growth|negative regulation of phagocytosis|negative regulation of translation|negative regulation of Wnt receptor signaling pathway|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of gastrulation|positive regulation of GTPase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein homooligomerization|positive regulation of protein phosphorylation|regulation of cell cycle|regulation of cell division|regulation of establishment of cell polarity|regulation of protein localization|rhythmic process	cytoskeleton|dendrite|midbody|nucleus|perikaryon|perinuclear region of cytoplasm|phagocytic cup|small ribosomal subunit	ion channel inhibitor activity|protein kinase C binding|protein phosphatase binding|protein tyrosine kinase inhibitor activity|receptor tyrosine kinase binding|SH2 domain binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.101)|all cancers(165;0.11)		CAGAAGCACAGAGGGATCCAT	0.517		NA											15	260					0	0	0	0
DSP	1832	broad.mit.edu	37	6	7574448	7574448	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:7574448G>A	uc003mxp.1	+	16	2539	c.2260G>A	c.(2260-2262)GAA>AAA	p.E754K	DSP_uc003mxq.1_Missense_Mutation_p.E754K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	754	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCAGAAACTGGAAAATATCAA	0.353		NA											9	151					0	0	0	0
DSP	1832	broad.mit.edu	37	6	7574454	7574454	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:7574454A>T	uc003mxp.1	+	16	2545	c.2266A>T	c.(2266-2268)ATC>TTC	p.I756F	DSP_uc003mxq.1_Missense_Mutation_p.I756F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	756	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACTGGAAAATATCAATGGTGT	0.348		NA											8	154					0	0	0	0
TFAP2A	7020	broad.mit.edu	37	6	10404781	10404781	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:10404781C>G	uc003myr.2	-	4	976	c.724G>C	c.(724-726)GAG>CAG	p.E242Q	TFAP2A_uc003myq.2_Missense_Mutation_p.E236Q|TFAP2A_uc003mys.2_RNA|TFAP2A_uc011dih.1_Missense_Mutation_p.E242Q|TFAP2A_uc003myt.2_Missense_Mutation_p.E238Q|TFAP2A_uc003myu.1_Missense_Mutation_p.E242Q	NM_003220	NP_003211	P05549	AP2A_HUMAN	transcription factor AP-2 alpha isoform a	242					ectoderm development|positive regulation of bone mineralization|positive regulation of tooth mineralization|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	centrosome|Golgi apparatus|nucleus	chromatin binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)	1	Breast(50;0.0427)|Ovarian(93;0.0991)	all_hematologic(90;0.107)				TTGAGACACTCGGGTGGTGAG	0.507		NA											5	24					0	0	0	0
SLC17A4	10050	broad.mit.edu	37	6	25762243	25762243	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:25762243G>A	uc003nfe.2	+	2	172	c.53G>A	c.(52-54)GGC>GAC	p.G18D	SLC17A4_uc011djx.1_Missense_Mutation_p.G18D|SLC17A4_uc003nff.1_5'UTR|SLC17A4_uc003nfg.2_5'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	18					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						TCCAGTGATGGCAATTTAAAC	0.418		NA											10	80					0	0	0	0
HIST1H2AC	8334	broad.mit.edu	37	6	26124494	26124494	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:26124494C>T	uc003ngm.2	+	1	122	c.34C>T	c.(34-36)CGC>TGC	p.R12C	HIST1H2BC_uc003ngk.3_5'Flank|HIST1H2BC_uc003ngl.2_5'Flank|HIST1H2AC_uc003ngn.2_RNA|HIST1H2AC_uc003ngo.2_RNA|HIST1H2AC_uc003ngp.2_Missense_Mutation_p.R12C	NM_003512	NP_003503	Q93077	H2A1C_HUMAN	histone cluster 1, H2ac	12					nucleosome assembly	nucleosome|nucleus	DNA binding				0						AGGCAAAGCTCGCGCCAAAGC	0.542		NA											6	58					0	0	0	0
ZNF311	282890	broad.mit.edu	37	6	28962832	28962832	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:28962832G>A	uc003nlu.2	-	7	2460	c.1947C>T	c.(1945-1947)CTC>CTT	p.L649L	ZNF311_uc011dlk.1_Silent_p.L557L|ZNF311_uc003nlv.2_Silent_p.L557L	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	649					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						TCACTGGAGAGAGGGATTTCC	0.358		NA											11	100					0	0	0	0
OR2J2	26707	broad.mit.edu	37	6	29141556	29141556	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:29141556C>G	uc011dlm.1	+	1	246	c.144C>G	c.(142-144)ATC>ATG	p.I48M		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCATCATCATCCTGTCATACG	0.443		NA											26	363					0	0	0	0
TRIM10	10107	broad.mit.edu	37	6	30122127	30122127	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:30122127C>A	uc003npo.3	-	7	1141	c.1065G>T	c.(1063-1065)CTG>CTT	p.L355L	TRIM10_uc003npn.2_Silent_p.L355L	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	355	B30.2/SPRY.					cytoplasm	zinc ion binding				0						CAGTGTGGGCCAGAACACAGG	0.612		NA											5	72					0.000602214	0.000621774	1	0
HLA-C	3107	broad.mit.edu	37	6	31238116	31238116	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:31238116C>A	uc003nsy.2	-	4	773	c.766G>T	c.(766-768)GAG>TAG	p.E256*	HLA-C_uc011dnj.1_Nonsense_Mutation_p.E228*|HLA-C_uc003nsx.2_Nonsense_Mutation_p.E135*|HLA-C_uc003nsz.2_Nonsense_Mutation_p.E256*|HLA-C_uc010jsl.2_Nonsense_Mutation_p.E256*|HLA-C_uc003nta.2_Nonsense_Mutation_p.E256*|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Nonsense_Mutation_p.E135*	NM_002117	NP_002108	Q9TNN7	1C05_HUMAN	major histocompatibility complex, class I, C	256	Extracellular (Potential).|Alpha-3.|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex					0						GGCCTGGTCTCCACAAGCTCG	0.627		NA											9	114					0.00448238	0.00456553	1	0
RUNX2	860	broad.mit.edu	37	6	45390398	45390398	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:45390398A>G	uc011dvx.1	+	3	337	c.127A>G	c.(127-129)AGC>GGC	p.S43G	RUNX2_uc011dvy.1_Missense_Mutation_p.S43G|RUNX2_uc003oxt.2_Missense_Mutation_p.S29G	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	43					negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						GAGCGACGTGAGCCCGGTGGT	0.378		NA											8	49					0	0	0	0
EFHC1	114327	broad.mit.edu	37	6	52318995	52318995	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:52318995C>T	uc003pap.3	+	5	1041	c.826C>T	c.(826-828)CGA>TGA	p.R276*	EFHC1_uc011dwv.1_Nonsense_Mutation_p.R185*|EFHC1_uc011dww.1_Nonsense_Mutation_p.R257*	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	276	DM10 2.					axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					GGTGGAAATTCGAGAGGTCCA	0.448		NA											18	163					0	0	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62995847	62995848	+	Missense_Mutation	DNP	CT	CT	GG			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:62995847_62995848CT>GG	uc003peg.2	-	1	253_254	c.6_7AG>CC	c.(4-9)GAAGAG>GACCAG	p.2_3EE>DQ		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	2_3					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TATTTCTCCTCTTCCATAGCGC	0.609		NA											4	33					0	0	0	0
CD109	135228	broad.mit.edu	37	6	74520797	74520797	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:74520797C>T	uc003php.2	+	28	4054	c.3629C>T	c.(3628-3630)ACG>ATG	p.T1210M	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.T1210M|CD109_uc010kba.2_Missense_Mutation_p.T1133M	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1210						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						GTGACCGTGACGGGGCCTAGC	0.458		NA											18	133					0	0	0	0
HTR1B	3351	broad.mit.edu	37	6	78173080	78173080	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:78173080G>A	uc003pil.1	-	1	41	c.41C>T	c.(40-42)GCG>GTG	p.A14V		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	14	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	CTCGGAGCCCGCGGGCGGCGG	0.642		NA											10	130					0	0	0	0
USP45	85015	broad.mit.edu	37	6	99894228	99894228	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:99894228T>C	uc003ppx.2	-	14	1953	c.1420A>G	c.(1420-1422)AGC>GGC	p.S474G	USP45_uc003ppv.2_Intron|USP45_uc003ppw.2_Missense_Mutation_p.S154G	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	474					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		TTCATGAGGCTGGCAAACATT	0.398		NA											11	105					0	0	0	0
SEC63	11231	broad.mit.edu	37	6	108246120	108246120	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:108246120C>T	uc003psc.3	-	3	510	c.241G>A	c.(241-243)GCA>ACA	p.A81T		NM_007214	NP_009145	Q9UGP8	SEC63_HUMAN	SEC63-like protein	81	Helical; (Potential).				protein folding|protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|receptor activity|unfolded protein binding			ovary(1)|skin(1)	2		all_cancers(87;5.35e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00225)|Colorectal(196;0.0294)		BRCA - Breast invasive adenocarcinoma(108;0.0079)|Epithelial(106;0.0356)|all cancers(137;0.0525)|OV - Ovarian serous cystadenocarcinoma(136;0.054)		GCCCATCCTGCAAGCAGAACT	0.348		NA											8	124					0	0	0	0
NR2E1	7101	broad.mit.edu	37	6	108492787	108492787	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:108492787G>T	uc003psg.2	+	2	906	c.151G>T	c.(151-153)GTC>TTC	p.V51F		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	51	Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		TAGGACCTATGTCTGCAAATC	0.577		NA											35	259					3.66e-26	4.06e-26	1	0
MICAL1	64780	broad.mit.edu	37	6	109765452	109765452	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:109765452C>T	uc003ptj.2	-	24	3400	c.3146G>A	c.(3145-3147)CGC>CAC	p.R1049H	MICAL1_uc003ptk.2_Missense_Mutation_p.R1049H|MICAL1_uc010kdr.2_Missense_Mutation_p.R963H|MICAL1_uc011eaq.1_Missense_Mutation_p.R1068H	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	1049					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		CTCCTGGAAGCGGATGAGGGC	0.592		NA											10	60					0	0	0	0
TSPYL4	23270	broad.mit.edu	37	6	116574172	116574172	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:116574172G>A	uc003pwn.2	-	1	1090	c.1000C>T	c.(1000-1002)CGA>TGA	p.R334*	DSE_uc011ebf.1_5'Flank|TSPYL4_uc011ebe.1_Nonsense_Mutation_p.R162*|uc003pwo.1_5'Flank	NM_021648	NP_067680	Q9UJ04	TSYL4_HUMAN	TSPY-like 4	334					nucleosome assembly	nucleus					0		all_cancers(87;0.0144)|all_epithelial(87;0.021)|Colorectal(196;0.234)		all cancers(137;0.045)|OV - Ovarian serous cystadenocarcinoma(136;0.0666)|GBM - Glioblastoma multiforme(226;0.095)|Epithelial(106;0.125)		TCTTGGCCTCGGTGCCAGCGG	0.532		NA											7	86					0	0	0	0
HBS1L	10767	broad.mit.edu	37	6	135363201	135363201	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:135363201T>C	uc003qez.2	-	3	380	c.173A>G	c.(172-174)TAT>TGT	p.Y58C	HBS1L_uc011ecy.1_5'UTR|HBS1L_uc011ecz.1_Intron|HBS1L_uc011eda.1_Intron|HBS1L_uc003qfa.2_Missense_Mutation_p.Y58C	NM_006620	NP_006611	Q9Y450	HBS1L_HUMAN	Hsp70 subfamily B suppressor 1-like protein	58					signal transduction		GTP binding|GTPase activity|translation elongation factor activity			skin(2)	2	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0046)|GBM - Glioblastoma multiforme(68;0.00702)		CAGATCTTCATAATCATATTC	0.358		NA											6	86					0	0	0	0
MAP3K5	4217	broad.mit.edu	37	6	136913701	136913701	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:136913701C>G	uc003qhc.2	-	22	3291	c.2930G>C	c.(2929-2931)AGC>ACC	p.S977T	MAP3K5_uc011edj.1_Missense_Mutation_p.S224T|MAP3K5_uc011edk.1_Missense_Mutation_p.S823T	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	977					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		ACTGCTGCTGCTGGTGTCCTC	0.478		NA											8	132					0	0	0	0
KIAA1244	57221	broad.mit.edu	37	6	138615205	138615205	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:138615205G>A	uc003qhu.2	+	20	3444	c.3444G>A	c.(3442-3444)TCG>TCA	p.S1148S		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1148					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AGAAAGCATCGCAGTCTCAGC	0.433		NA											12	111					0	0	0	0
SASH1	23328	broad.mit.edu	37	6	148855055	148855055	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:148855055G>A	uc003qme.1	+	15	2358	c.1883G>A	c.(1882-1884)CGG>CAG	p.R628Q	SASH1_uc011eeb.1_Missense_Mutation_p.R389Q|SASH1_uc003qmf.1_Missense_Mutation_p.R38Q	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	628							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		AGGAGGCGTCGGAAAGGACGA	0.537		NA											18	150					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152826378	152826378	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:152826378C>T	uc010kiw.2	-	9	1338	c.736G>A	c.(736-738)GCC>ACC	p.A246T	SYNE1_uc003qot.3_Missense_Mutation_p.A253T|SYNE1_uc003qou.3_Missense_Mutation_p.A246T|SYNE1_uc010kjb.1_Missense_Mutation_p.A246T|SYNE1_uc003qpa.1_Missense_Mutation_p.A246T	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	246	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCTGTTTCGGCGATAGTGAAA	0.433		NA								HNSCC(10;0.0054)			8	101					0	0	0	0
TAGAP	117289	broad.mit.edu	37	6	159462434	159462434	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:159462434C>T	uc003qrz.2	-	6	761	c.429G>A	c.(427-429)GCG>GCA	p.A143A	TAGAP_uc011eft.1_Silent_p.A80A|TAGAP_uc003qsa.2_5'UTR|TAGAP_uc003qsb.2_Silent_p.A143A|uc003qsc.2_5'Flank	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	143	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CCAGATCCACCGCATCCCCAG	0.552		NA											8	135					0	0	0	0
IGF2R	3482	broad.mit.edu	37	6	160468852	160468852	+	Missense_Mutation	SNP	G	G	A	rs141234361		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:160468852G>A	uc003qta.2	+	17	2406	c.2258G>A	c.(2257-2259)CGG>CAG	p.R753Q		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	753	5.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		TACAACTTCCGGTGGTACACC	0.552		NA											11	162					0	0	0	0
SUN1	23353	broad.mit.edu	37	7	899771	899771	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:899771G>A	uc011jvp.1	+	15	1610	c.1531G>A	c.(1531-1533)GTG>ATG	p.V511M	GET4_uc003sjj.1_RNA|SUN1_uc003sjf.2_Missense_Mutation_p.V428M|SUN1_uc011jvq.1_Missense_Mutation_p.V408M|SUN1_uc003sjg.2_Missense_Mutation_p.V416M|SUN1_uc011jvr.1_Missense_Mutation_p.V309M|SUN1_uc003sji.2_Missense_Mutation_p.V349M|SUN1_uc003sjk.2_Missense_Mutation_p.V150M	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	538	Perinuclear space.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						CTAGGTGGACGTGCAAGTCAG	0.433		NA											5	82					0	0	0	0
RAC1	5879	broad.mit.edu	37	7	6441974	6441974	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:6441974C>T	uc003spx.2	+	6	717	c.476C>T	c.(475-477)GCG>GTG	p.A159V	RAC1_uc003spw.2_Missense_Mutation_p.A178V	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	159					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	GAGTGCTCGGCGCTCACACAG	0.567		NA											10	89					0	0	0	0
GLCCI1	113263	broad.mit.edu	37	7	8110704	8110704	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:8110704G>A	uc003srk.2	+	6	1679	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	374											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		TTGTCCCCCGGAATCCCAGGA	0.498		NA											15	272					0	0	0	0
CDCA7L	55536	broad.mit.edu	37	7	21946011	21946011	+	Missense_Mutation	SNP	G	G	A	rs139249411		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:21946011G>A	uc010kuk.2	-	6	937	c.817C>T	c.(817-819)CGG>TGG	p.R273W	CDCA7L_uc003sve.3_Missense_Mutation_p.R239W|CDCA7L_uc010kul.2_Missense_Mutation_p.R227W|CDCA7L_uc003svf.3_Missense_Mutation_p.R272W	NM_018719	NP_061189	Q96GN5	CDA7L_HUMAN	cell division cycle associated 7-like isoform 1	273					positive regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus					0						CGCGCACTCCGGGTTGGGTTC	0.527		NA											23	275					0	0	0	0
NPY	4852	broad.mit.edu	37	7	24324938	24324938	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:24324938G>A	uc003sww.1	+	2	165	c.79G>A	c.(79-81)GAG>AAG	p.E27K		NM_000905	NP_000896	P01303	NPY_HUMAN	neuropeptide Y precursor	27					adult feeding behavior|calcium ion transport|cell proliferation|cellular component movement|central nervous system neuron development|cerebral cortex development|digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|neuron projection development|neuropeptide signaling pathway|positive regulation of appetite|synaptic transmission	cell|extracellular space	calcium channel regulator activity|G-protein coupled receptor activity|neuropeptide hormone activity				0						TGCGCTGGCCGAGGCGTACCC	0.642		NA											8	86					0	0	0	0
DFNA5	1687	broad.mit.edu	37	7	24789321	24789321	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:24789321G>C	uc010kus.1	-	2	161	c.73C>G	c.(73-75)CTG>GTG	p.L25V	DFNA5_uc003swz.2_Intron|DFNA5_uc003sxa.1_Missense_Mutation_p.L25V|DFNA5_uc010kut.1_Intron|DFNA5_uc003sxb.2_Missense_Mutation_p.L25V|DFNA5_uc003sxc.2_Missense_Mutation_p.L25V	NM_001127453	NP_001120925	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5 protein isoform	25					sensory perception of sound					ovary(1)	1						GAGTCATTCAGATTTGATACT	0.403		NA											27	277					0	0	0	0
C7orf31	136895	broad.mit.edu	37	7	25176366	25176366	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:25176366C>T	uc003sxn.1	-	10	1559	c.998G>A	c.(997-999)GGA>GAA	p.G333E	C7orf31_uc003sxm.1_Missense_Mutation_p.G175E	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	333											0						GGCAATTCGTCCTTCCAACGG	0.433		NA											42	307					0	0	0	0
PLEKHA8	84725	broad.mit.edu	37	7	30094365	30094365	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:30094365G>A	uc003tam.1	+	8	928	c.837G>A	c.(835-837)CTG>CTA	p.L279L	PLEKHA8_uc003tao.2_Silent_p.L163L|PLEKHA8_uc003tap.1_Silent_p.L279L|PLEKHA8_uc003tan.2_Silent_p.L279L	NM_032639	NP_116028	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A	279					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(3)|ovary(1)	4						TGGAAAACCTGAAAAATCATG	0.343		NA											14	145					0	0	0	0
NOD1	10392	broad.mit.edu	37	7	30485798	30485798	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:30485798G>A	uc003tav.2	-	9	2935	c.2412C>T	c.(2410-2412)CTC>CTT	p.L804L		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	804	LRR 5.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						CAGCCAGGGCGAGATACTTCC	0.527		NA											17	217					0	0	0	0
NPSR1	387129	broad.mit.edu	37	7	34724286	34724286	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:34724286G>A	uc003teg.1	+	2	398	c.270G>A	c.(268-270)CTG>CTA	p.L90L	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.L90L|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Silent_p.L90L|NPSR1_uc003tei.1_Silent_p.L90L|NPSR1_uc010kww.1_Silent_p.L90L|NPSR1_uc011kar.1_Silent_p.L90L	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	90	Helical; Name=2; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TGACTCAGCTGGCCATCACAG	0.393		NA											7	103					0	0	0	0
TBX20	57057	broad.mit.edu	37	7	35280555	35280555	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:35280555T>C	uc011kas.1	-	5	760	c.749A>G	c.(748-750)GAA>GGA	p.E250G		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	250	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						AGTTCTAAATTCTTCAGACTT	0.398		NA											8	100					0	0	0	0
GLI3	2737	broad.mit.edu	37	7	42017296	42017296	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:42017296G>C	uc011kbh.1	-	12	1764	c.1673C>G	c.(1672-1674)TCG>TGG	p.S558W	GLI3_uc011kbg.1_Missense_Mutation_p.S499W	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	558	C2H2-type 3.				negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TTCTAGTCTCGAGTAGGCCTT	0.458		NA							Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome		OREG0018015	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	139					0	0	0	0
MRPS24	64951	broad.mit.edu	37	7	43906549	43906549	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:43906549G>A	uc003tit.1	-	4	304	c.253C>T	c.(253-255)CGA>TGA	p.R85*		NM_032014	NP_114403	Q96EL2	RT24_HUMAN	mitochondrial ribosomal protein S24 precursor	85					translation	mitochondrial large ribosomal subunit|mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						TCCACCGTTCGCTCTGCGGCA	0.557		NA											11	92					0	0	0	0
AEBP1	165	broad.mit.edu	37	7	44153765	44153765	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:44153765G>C	uc003tkb.2	+	21	3687	c.3382G>C	c.(3382-3384)GAG>CAG	p.E1128Q	AEBP1_uc003tkc.3_Missense_Mutation_p.E703Q|AEBP1_uc003tkd.2_Missense_Mutation_p.E378Q	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	1128	Required for transcriptional repression (By similarity).|Glu-rich.|Interaction with MAPK1 and MAPK3 (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTTTgaggaagaggaggagga	0.463		NA											5	77					0	0	0	0
IGFBP3	3486	broad.mit.edu	37	7	45956231	45956231	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:45956231A>T	uc003tns.2	-	3	798	c.666T>A	c.(664-666)AAT>AAA	p.N222K	IGFBP3_uc003tnq.2_RNA|IGFBP3_uc003tnr.2_Missense_Mutation_p.N228K|IGFBP3_uc003tnt.2_Missense_Mutation_p.N125K	NM_000598	NP_000589	P17936	IBP3_HUMAN	insulin-like growth factor binding protein 3	222	Thyroglobulin type-1.				negative regulation of protein phosphorylation|negative regulation of signal transduction|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|positive regulation of apoptosis|positive regulation of myoblast differentiation|protein phosphorylation|regulation of cell growth	nucleus	insulin-like growth factor I binding|metal ion binding|protein tyrosine phosphatase activator activity			large_intestine(2)|lung(1)	3					Mecasermin(DB01277)	ACTTCAGGTGATTCAGTGTGT	0.463		NA											28	226					0	0	0	0
PKD1L1	168507	broad.mit.edu	37	7	47906074	47906074	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:47906074C>G	uc003tny.1	-	25	4035	c.4035G>C	c.(4033-4035)TGG>TGC	p.W1345C		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1345	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GTATTCGTGACCATTGGTTGC	0.433		NA											11	131					0	0	0	0
ABCA13	154664	broad.mit.edu	37	7	48428758	48428758	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:48428758C>G	uc003toq.2	+	37	11620	c.11595C>G	c.(11593-11595)TTC>TTG	p.F3865L	ABCA13_uc010kys.1_Missense_Mutation_p.F939L|ABCA13_uc003tos.1_Missense_Mutation_p.F691L|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3865	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GCCTGACCTTCTACAGAGACC	0.537		NA											10	78					0	0	0	0
ELN	2006	broad.mit.edu	37	7	73455550	73455550	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:73455550C>T	uc003tzw.2	+	5	292	c.201C>T	c.(199-201)CCC>CCT	p.P67P	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_RNA|ELN_uc011kfe.1_Silent_p.P67P|ELN_uc003tzn.2_Silent_p.P67P|ELN_uc003tzz.2_Intron|ELN_uc003tzo.2_Silent_p.P67P|ELN_uc003tzp.2_Silent_p.P57P|ELN_uc003tzq.2_Silent_p.P67P|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Silent_p.P67P|ELN_uc003tzt.2_Silent_p.P67P|ELN_uc003tzu.2_Silent_p.P67P|ELN_uc003tzv.2_Silent_p.P57P|ELN_uc003tzx.2_Silent_p.P57P|ELN_uc011kff.1_Silent_p.P67P|ELN_uc003tzy.2_Silent_p.P57P	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	67					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	CCACAGTTCCCGGAGGGCTTG	0.587		NA	T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						54	569					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962840	88962840	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:88962840C>T	uc011khi.1	+	4	1082	c.544C>T	c.(544-546)CGG>TGG	p.R182W		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	182						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CGATAAACAGCGGTCCACCAT	0.413		NA								HNSCC(36;0.09)			10	104					0	0	0	0
ANKIB1	54467	broad.mit.edu	37	7	92027054	92027054	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:92027054A>G	uc003ulw.2	+	19	2789	c.2413A>G	c.(2413-2415)AGC>GGC	p.S805G	ANKIB1_uc010lew.1_Missense_Mutation_p.S74G	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	805							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGAAGGCGGCAGCAGCAGCCG	0.458		NA											17	271					0	0	0	0
PON3	5446	broad.mit.edu	37	7	94996775	94996775	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:94996775C>T	uc003unt.2	-	5	418	c.393G>A	c.(391-393)GTG>GTA	p.V131V	PON1_uc011kih.1_Intron|PON3_uc011kii.1_Silent_p.V179V	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	131					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			GGGGATGATTCACAACATAAA	0.328		NA											15	184					0	0	0	0
GAL3ST4	79690	broad.mit.edu	37	7	99758392	99758392	+	Missense_Mutation	SNP	C	C	T	rs143212385		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:99758392C>T	uc003utt.2	-	3	1637	c.620G>A	c.(619-621)CGC>CAC	p.R207H	C7orf43_uc003utr.2_5'Flank|C7orf43_uc003uts.2_5'Flank|GAL3ST4_uc003utu.2_Missense_Mutation_p.R207H|GAL3ST4_uc010lgq.2_Missense_Mutation_p.R145H	NM_024637	NP_078913	Q96RP7	G3ST4_HUMAN	galactose-3-O-sulfotransferase 4	207	Lumenal (Potential).				cell-cell signaling|oligosaccharide metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane|membrane fraction	3'-phosphoadenosine 5'-phosphosulfate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(3)	3	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TAGTAAGTTGCGAGCGTAGTG	0.592		NA											15	144					0	0	0	0
PSMC2	5701	broad.mit.edu	37	7	102996176	102996176	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:102996176G>C	uc003vbs.2	+	4	296	c.226G>C	c.(226-228)GCA>CCA	p.A76P	SLC26A5_uc003vbt.1_Intron|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|PSMC2_uc011kln.1_Missense_Mutation_p.A76P|PSMC2_uc011klo.1_Intron	NM_002803	NP_002794	P35998	PRS7_HUMAN	proteasome 26S ATPase subunit 2	76					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding				0						GGCCCCACCAGCACTCTGGGA	0.438		NA											7	70					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103138545	103138545	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:103138545T>A	uc003vca.2	-	54	8982	c.8822A>T	c.(8821-8823)GAT>GTT	p.D2941V	RELN_uc010liz.2_Missense_Mutation_p.D2941V	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2941					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AAGATCCAAATCTTGTGTAAC	0.423		NA											16	166					0	0	0	0
ORC5L	5001	broad.mit.edu	37	7	103835694	103835694	+	Silent	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:103835694T>C	uc003vcb.2	-	5	561	c.450A>G	c.(448-450)AGA>AGG	p.R150R	ORC5L_uc011klp.1_Silent_p.R18R|ORC5L_uc003vcc.2_Silent_p.R150R|ORC5L_uc003vcd.2_Silent_p.R150R	NM_002553	NP_002544	O43913	ORC5_HUMAN	origin recognition complex subunit 5 isoform 1	150					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	cytoplasm|nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|identical protein binding				0						CAGTCACATTTCTGTCAGCCT	0.348		NA											9	98					0	0	0	0
ORC5L	5001	broad.mit.edu	37	7	103838195	103838195	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:103838195C>G	uc003vcb.2	-	4	530	c.419G>C	c.(418-420)GGA>GCA	p.G140A	ORC5L_uc011klp.1_Missense_Mutation_p.G8A|ORC5L_uc003vcc.2_Missense_Mutation_p.G140A|ORC5L_uc003vcd.2_Missense_Mutation_p.G140A	NM_002553	NP_002544	O43913	ORC5_HUMAN	origin recognition complex subunit 5 isoform 1	140					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	cytoplasm|nuclear origin of replication recognition complex|nucleoplasm	ATP binding|DNA replication origin binding|identical protein binding				0						TCTAAGAAATCCAGGCAAAAG	0.184		NA											4	49					0	0	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117375351	117375351	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:117375351G>A	uc003vjf.2	-	15	3752	c.3660C>T	c.(3658-3660)AGC>AGT	p.S1220S		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1220										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		GGCTTTCAGTGCTGCGATTTT	0.388		NA											10	124					0	0	0	0
GPR37	2861	broad.mit.edu	37	7	124386639	124386639	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:124386639C>T	uc003vli.2	-	2	2433	c.1782G>A	c.(1780-1782)TCG>TCA	p.S594S		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	594	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						TACTGAAAGGCGAGAGTTCGA	0.463		NA											17	182					0	0	0	0
CPA2	1358	broad.mit.edu	37	7	129910535	129910535	+	Silent	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:129910535C>G	uc003vpq.2	+	4	310	c.291C>G	c.(289-291)GTC>GTG	p.V97V	CPA2_uc011kpc.1_Silent_p.V97V	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	97					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					TATCTTAGGTCCTGTTGGACA	0.423		NA											11	102					0	0	0	0
DGKI	9162	broad.mit.edu	37	7	137092654	137092654	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:137092654T>C	uc003vtt.2	-	31	2912	c.2911A>G	c.(2911-2913)AAC>GAC	p.N971D	DGKI_uc003vtu.2_Missense_Mutation_p.N640D	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	971	ANK 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ATCTCCCCGTTGCCGGTTTTA	0.428		NA											12	193					0	0	0	0
AKR1D1	6718	broad.mit.edu	37	7	137801394	137801394	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:137801394C>A	uc003vtz.2	+	9	1036	c.967C>A	c.(967-969)CAT>AAT	p.H323N	AKR1D1_uc011kqe.1_3'UTR|AKR1D1_uc011kqf.1_Missense_Mutation_p.H282N|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	323					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						ATACCCATTTCATGATGAATA	0.448		NA											10	172					4.38e-07	4.65e-07	1	0
ATP6V0A4	50617	broad.mit.edu	37	7	138394405	138394405	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:138394405C>T	uc003vuf.2	-	20	2631	c.2393G>A	c.(2392-2394)GGC>GAC	p.G798D	ATP6V0A4_uc003vug.2_Missense_Mutation_p.G798D|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.G798D	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	798	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						AGCAGAGAGGCCCTCCATGAT	0.448		NA											16	376					0	0	0	0
TTC26	79989	broad.mit.edu	37	7	138874171	138874171	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:138874171C>A	uc003vus.2	+	18	1772	c.1658C>A	c.(1657-1659)TCC>TAC	p.S553Y	TTC26_uc011kqn.1_3'UTR|TTC26_uc011kqo.1_Missense_Mutation_p.S522Y|TTC26_uc011kqp.1_Missense_Mutation_p.S448Y|TTC26_uc003vut.2_Missense_Mutation_p.S413Y|TTC26_uc011kqq.1_Missense_Mutation_p.S422Y	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	553							binding			ovary(1)	1						AACAGAGTGTCCATCTAAAAT	0.428		NA											20	163					3.99e-14	4.4e-14	1	0
DENND2A	27147	broad.mit.edu	37	7	140301642	140301642	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:140301642A>G	uc010lnj.2	-	1	701	c.556T>C	c.(556-558)TAC>CAC	p.Y186H	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.Y186H|DENND2A_uc003vvw.2_Missense_Mutation_p.Y186H|DENND2A_uc003vvx.2_Missense_Mutation_p.Y186H	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	186										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					TGTGGGGAGTAACAAGTCCCT	0.607		NA											9	132					0	0	0	0
OR6B1	135946	broad.mit.edu	37	7	143701563	143701563	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:143701563G>A	uc003wdt.1	+	1	474	c.474G>A	c.(472-474)GCG>GCA	p.A158A		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TCTCCCTGGCGAAGATCTACT	0.532		NA											12	93					0	0	0	0
CUL1	8454	broad.mit.edu	37	7	148463737	148463737	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:148463737G>A	uc010lpg.2	+	8	1400	c.874G>A	c.(874-876)GAA>AAA	p.E292K	CUL1_uc003wey.2_Missense_Mutation_p.E292K|CUL1_uc003wez.2_Missense_Mutation_p.E182K	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	292					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			AAGGAAATGTGAACAAGTCCT	0.378		NA											12	72					0	0	0	0
ZNF786	136051	broad.mit.edu	37	7	148767536	148767536	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:148767536C>G	uc003wfh.2	-	4	2465	c.2328G>C	c.(2326-2328)ATG>ATC	p.M776I	ZNF786_uc011kuk.1_Missense_Mutation_p.M739I|ZNF786_uc003wfi.2_Missense_Mutation_p.M690I	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	776					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CGGCCTCTATCATTGCAAACA	0.498		NA											42	495					0	0	0	0
AGAP3	116988	broad.mit.edu	37	7	150815687	150815687	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:150815687G>A	uc003wjg.1	+	7	940	c.937G>A	c.(937-939)GCC>ACC	p.A313T	AGAP3_uc003wje.1_Missense_Mutation_p.A85T|AGAP3_uc003wjf.1_Missense_Mutation_p.A313T|AGAP3_uc010lpy.1_Missense_Mutation_p.A313T|AGAP3_uc003wjh.1_Missense_Mutation_p.A493T|AGAP3_uc003wji.1_5'Flank	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	277	Small GTPase-like.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GGCCGTGTCCGCCGCCTCCAT	0.662		NA											10	148					0	0	0	0
SMARCD3	6604	broad.mit.edu	37	7	150945607	150945607	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:150945607C>T	uc003wjs.2	-	1	143	c.42G>A	c.(40-42)ACG>ACA	p.T14T	SMARCD3_uc003wjt.2_Intron|SMARCD3_uc003wju.2_Intron|SMARCD3_uc011kvh.1_Silent_p.T14T|SMARCD3_uc010lqa.1_Silent_p.T14T	NM_001003801	NP_001003801	Q6STE5	SMRD3_HUMAN	SWI/SNF related, matrix associated, actin	14					cellular lipid metabolic process|chromatin modification|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	nuclear hormone receptor binding|protein binding|transcription coactivator activity|transcription factor binding			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTTTGCTTTTCGTGGCTTTGC	0.507		NA											23	184					0	0	0	0
MLL3	58508	broad.mit.edu	37	7	151884562	151884562	+	Splice_Site	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:151884562C>A	uc003wla.2	-	33	5013	c.4794_splice	c.e33-1	p.R1598_splice	MLL3_uc003wkz.2_Splice_Site_p.R659_splice	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3						intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTTTTATCCCTGGGAAAAAA	0.313		NA	N		medulloblastoma								25	197					6.36e-07	6.74e-07	1	0
ESYT2	57488	broad.mit.edu	37	7	158557391	158557391	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:158557391G>C	uc003wob.1	-	9	1288	c.1222C>G	c.(1222-1224)CCA>GCA	p.P408A	ESYT2_uc003woc.1_Missense_Mutation_p.P232A|ESYT2_uc003wod.1_Missense_Mutation_p.P408A|ESYT2_uc003woa.1_5'Flank	NM_020728	NP_065779	A0FGR8	ESYT2_HUMAN	family with sequence similarity 62 (C2 domain	436	C2 1.					integral to membrane|plasma membrane				central_nervous_system(2)|kidney(1)	3						TTCCACTTTGGACTGAGGTTC	0.512		NA											18	251					0	0	0	0
TUSC3	7991	broad.mit.edu	37	8	15480730	15480730	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:15480730C>T	uc003wwt.2	+	2	490	c.280C>T	c.(280-282)CAG>TAG	p.Q94*	TUSC3_uc003wwr.2_Nonsense_Mutation_p.Q94*|TUSC3_uc003wws.2_Nonsense_Mutation_p.Q94*|TUSC3_uc003wwu.2_Nonsense_Mutation_p.Q94*|TUSC3_uc003wwv.2_Nonsense_Mutation_p.Q94*|TUSC3_uc003www.2_Nonsense_Mutation_p.Q94*|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Nonsense_Mutation_p.Q94*	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	94					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		CACTGCTCTTCAGCCTCAGCG	0.313		NA											14	166					0	0	0	0
PSD3	23362	broad.mit.edu	37	8	18729698	18729698	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:18729698G>A	uc003wza.2	-	3	779	c.676C>T	c.(676-678)CAG>TAG	p.Q226*		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	226					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		ATCTCTGCCTGAGTGTCTCCA	0.473		NA											16	209					0	0	0	0
KIAA1967	57805	broad.mit.edu	37	8	22464808	22464808	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:22464808C>G	uc003xch.2	+	6	594	c.457C>G	c.(457-459)CAC>GAC	p.H153D	KIAA1967_uc003xci.2_Missense_Mutation_p.H153D|KIAA1967_uc003xcj.1_5'UTR	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	153					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CTTCCAGCCTCACCGGATTCC	0.552		NA											5	63					0	0	0	0
DOCK5	80005	broad.mit.edu	37	8	25250378	25250378	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:25250378G>C	uc003xeg.2	+	44	4644	c.4507G>C	c.(4507-4509)GAA>CAA	p.E1503Q	PPP2R2A_uc003xek.2_Intron|DOCK5_uc003xei.2_Missense_Mutation_p.E1073Q|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	1503	DHR-2.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		CAAGTGGTTTGAAGTCAAACA	0.388		NA											3	34					0	0	0	0
XKR4	114786	broad.mit.edu	37	8	56435944	56435944	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:56435944G>A	uc003xsf.2	+	3	1143	c.1111G>A	c.(1111-1113)GCC>ACC	p.A371T		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	371	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CAGCTACATGGCCGTCATCAT	0.587		NA											8	121					0	0	0	0
FAM110B	90362	broad.mit.edu	37	8	59059120	59059120	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:59059120G>A	uc003xtj.1	+	5	1211	c.331G>A	c.(331-333)GTG>ATG	p.V111M		NM_147189	NP_671722	Q8TC76	F110B_HUMAN	hypothetical protein LOC90362	111						microtubule organizing center|mitochondrion|nucleus				large_intestine(1)	1		all_epithelial(80;0.025)|all_lung(136;0.0274)|Lung NSC(129;0.0355)				CGAGAGCGGCGTGCAGAGGGA	0.652		NA											8	53					0	0	0	0
VCPIP1	80124	broad.mit.edu	37	8	67578144	67578144	+	Silent	SNP	G	G	A	rs117246146		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:67578144G>A	uc003xwn.2	-	1	1309	c.1050C>T	c.(1048-1050)TCC>TCT	p.S350S	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	350	OTU.				protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			GGTTTCTACCGGAGCTGCTCC	0.483		NA											19	218					0	0	0	0
PREX2	80243	broad.mit.edu	37	8	69103989	69103989	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:69103989C>G	uc003xxv.1	+	36	4406	c.4379C>G	c.(4378-4380)CCA>CGA	p.P1460R		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1460					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AATTCACCACCAAACTCCACA	0.313		NA											9	134					0	0	0	0
JPH1	56704	broad.mit.edu	37	8	75227552	75227552	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:75227552G>T	uc003yae.2	-	2	723	c.683C>A	c.(682-684)TCC>TAC	p.S228Y	JPH1_uc003yaf.2_Missense_Mutation_p.S228Y|JPH1_uc003yag.1_Missense_Mutation_p.S92Y	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	228	Cytoplasmic (Potential).|Ser-rich.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			GGAAGACTTGGATTCGGACTT	0.577		NA											20	145					1.96e-10	2.13e-10	1	0
OTUD6B	51633	broad.mit.edu	37	8	92083441	92083441	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:92083441C>T	uc003yeu.3	+	2	347	c.248C>T	c.(247-249)GCC>GTC	p.A83V	uc003yet.2_5'Flank|OTUD6B_uc011lgh.1_5'UTR	NM_016023	NP_057107	Q8N6M0	OTU6B_HUMAN	OTU domain containing 6B	53										ovary(2)|lung(1)	3			BRCA - Breast invasive adenocarcinoma(11;0.0187)			GAAGATGTGGCCAAGTTGGAA	0.393		NA											18	96					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113317138	113317138	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:113317138G>A	uc003ynu.2	-	52	8237	c.8078C>T	c.(8077-8079)ACA>ATA	p.T2693I	CSMD3_uc003yns.2_Missense_Mutation_p.T1895I|CSMD3_uc003ynt.2_Missense_Mutation_p.T2653I|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2693	Extracellular (Potential).|Sushi 16.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GCTTGGACATGTAACAACTAT	0.363		NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			6	46					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113318368	113318368	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:113318368C>A	uc003ynu.2	-	51	8098	c.7939G>T	c.(7939-7941)GAC>TAC	p.D2647Y	CSMD3_uc003yns.2_Missense_Mutation_p.D1849Y|CSMD3_uc003ynt.2_Missense_Mutation_p.D2607Y|CSMD3_uc011lhx.1_Missense_Mutation_p.D2543Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2647	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACCAAATAGTCTGTTGTTAGT	0.368		NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			10	121					0.00621372	0.0063077	1	0
ENPP2	5168	broad.mit.edu	37	8	120569896	120569896	+	Silent	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:120569896G>C	uc003yot.1	-	25	2543	c.2457C>G	c.(2455-2457)CTC>CTG	p.L819L	ENPP2_uc011lic.1_Silent_p.L357L|ENPP2_uc003yor.1_Silent_p.L454L|ENPP2_uc003yos.1_Silent_p.L871L|ENPP2_uc010mdd.1_Silent_p.L844L	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	819					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			GCATCTTCATGAGTTCTTCTA	0.463		NA											22	203					0	0	0	0
TAF2	6873	broad.mit.edu	37	8	120772953	120772953	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:120772953G>A	uc003you.2	-	20	2854	c.2584C>T	c.(2584-2586)CAG>TAG	p.Q862*		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	862					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CCGTTCTTCTGAAGTACCCGT	0.393		NA											24	171					0	0	0	0
ZHX1	11244	broad.mit.edu	37	8	124266008	124266008	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:124266008G>C	uc003yqe.2	-	3	2609	c.2179C>G	c.(2179-2181)CAG>GAG	p.Q727E	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.Q727E|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.Q727E	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	727					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TTGGCGCTCTGATAGTAGTAG	0.502		NA											21	200					0	0	0	0
ZHX1	11244	broad.mit.edu	37	8	124267621	124267621	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:124267621T>C	uc003yqe.2	-	3	996	c.566A>G	c.(565-567)AAT>AGT	p.N189S	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.N189S|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.N189S	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	189					negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TTCCACTTTATTTTTCATCAT	0.353		NA											26	205					0	0	0	0
ADCY8	114	broad.mit.edu	37	8	131792719	131792719	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:131792719A>G	uc003ytd.3	-	18	3929	c.3673T>C	c.(3673-3675)TAC>CAC	p.Y1225H	ADCY8_uc010mds.2_Missense_Mutation_p.Y1094H	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1225	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CGCCGGTTGTAATGACCCTTG	0.517		NA								HNSCC(32;0.087)			21	142					0	0	0	0
SLC45A4	57210	broad.mit.edu	37	8	142229061	142229061	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:142229061C>A	uc003ywd.1	-	4	833	c.525G>T	c.(523-525)TGG>TGT	p.W175C	SLC45A4_uc003ywc.1_Missense_Mutation_p.W175C|SLC45A4_uc010meq.1_Missense_Mutation_p.W173C	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	226					transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			GGGTCCGGAACCAGCTGCCCA	0.652		NA											17	121					6.94e-10	7.53e-10	1	0
TOP1MT	116447	broad.mit.edu	37	8	144398271	144398271	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:144398271G>C	uc003yxz.2	-	11	1375	c.1356C>G	c.(1354-1356)ATC>ATG	p.I452M	TOP1MT_uc011lkd.1_Missense_Mutation_p.I354M|TOP1MT_uc011lke.1_Missense_Mutation_p.I354M|TOP1MT_uc010mfb.2_Missense_Mutation_p.I354M|TOP1MT_uc011lkf.1_Missense_Mutation_p.I247M	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	452					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	TGTAGGATAAGATCTTAGCTG	0.602		NA											15	112					0	0	0	0
ZC3H3	23144	broad.mit.edu	37	8	144548019	144548019	+	Splice_Site	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:144548019C>T	uc003yyd.2	-	9	2205	c.2176_splice	c.e9-1	p.M726_splice		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3						mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			ACACCGGCATCTGCAGGGAGG	0.657		NA											5	39					0	0	0	0
EPPK1	83481	broad.mit.edu	37	8	144947011	144947011	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:144947011G>A	uc003zaa.1	-	1	424	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	137	Plectin 3.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTCCTTCCCGATGGCCTGAA	0.682		NA											9	46					0	0	0	0
MPDZ	8777	broad.mit.edu	37	9	13121863	13121863	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:13121863C>G	uc010mia.1	-	37	5163	c.5106G>C	c.(5104-5106)CAG>CAC	p.Q1702H	MPDZ_uc003zkx.3_5'Flank|MPDZ_uc003zky.3_Missense_Mutation_p.Q236H|MPDZ_uc010mib.2_Missense_Mutation_p.Q407H|MPDZ_uc010mhx.2_Missense_Mutation_p.Q524H|MPDZ_uc011lmm.1_Missense_Mutation_p.Q561H|MPDZ_uc003zkz.3_Missense_Mutation_p.Q395H|MPDZ_uc010mhy.2_Missense_Mutation_p.Q1702H|MPDZ_uc010mhz.2_Missense_Mutation_p.Q1669H|MPDZ_uc011lmn.1_Missense_Mutation_p.Q1669H|MPDZ_uc003zlb.3_Missense_Mutation_p.Q1702H	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1702	PDZ 10.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GGCGCACTCTCTGTGGCGTCT	0.498		NA											10	52					0	0	0	0
VCP	7415	broad.mit.edu	37	9	35062342	35062342	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:35062342C>G	uc003zvy.2	-	8	1206	c.817G>C	c.(817-819)GAG>CAG	p.E273Q	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_Missense_Mutation_p.E228Q	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	273					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CTCATGATCTCAGGACCTGAA	0.443		NA											15	128					0	0	0	0
RUSC2	9853	broad.mit.edu	37	9	35546558	35546558	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:35546558G>A	uc003zww.2	+	2	295	c.40G>A	c.(40-42)GTT>ATT	p.V14I	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.V14I	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	14						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			GACCCTCATCGTTCATCACAT	0.582		NA											15	202					0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35716472	35716472	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:35716472T>C	uc003zxt.2	-	20	2894	c.2540A>G	c.(2539-2541)GAA>GGA	p.E847G		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	847					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CAGATCACTTTCCCCCTCAGC	0.567		NA											23	270					0	0	0	0
RECK	8434	broad.mit.edu	37	9	36087862	36087862	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:36087862C>G	uc003zyv.2	+	9	895	c.809C>G	c.(808-810)TCT>TGT	p.S270C	RECK_uc003zyw.2_Missense_Mutation_p.S142C|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	270	5 X Knot repeats.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			AGCTCACAATCTGTTCACCCT	0.458		NA											15	94					0	0	0	0
FAM22F	54754	broad.mit.edu	37	9	97084496	97084496	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:97084496C>T	uc004aup.1	-	3	850	c.829G>A	c.(829-831)GAG>AAG	p.E277K		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	277											0		Acute lymphoblastic leukemia(62;0.136)				TCCGCCATCTCGTAGAAGATC	0.642		NA											20	119					0	0	0	0
ANKS6	203286	broad.mit.edu	37	9	101552604	101552604	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:101552604G>A	uc004ayu.2	-	2	665	c.644C>T	c.(643-645)GCG>GTG	p.A215V	ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	215	ANK 5.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				GTTGGGGTCCGCGCCCCACTC	0.692		NA											7	83					0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113275247	113275247	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:113275247A>G	uc010mtz.2	-	5	1599	c.1262T>C	c.(1261-1263)CTA>CCA	p.L421P	SVEP1_uc010mua.1_Missense_Mutation_p.L421P|SVEP1_uc004beu.2_Missense_Mutation_p.L421P|SVEP1_uc004bev.2_Missense_Mutation_p.L165P	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	421	Sushi 1.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACCATTGGGTAGACATAAGAT	0.433		NA											6	83					0	0	0	0
ZNF618	114991	broad.mit.edu	37	9	116811382	116811382	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:116811382G>C	uc004bid.2	+	15	1899	c.1800G>C	c.(1798-1800)CAG>CAC	p.Q600H	ZNF618_uc004bic.2_Missense_Mutation_p.Q507H|ZNF618_uc011lxi.1_Missense_Mutation_p.Q567H|ZNF618_uc011lxj.1_Missense_Mutation_p.Q568H|ZNF618_uc010mvb.2_Missense_Mutation_p.Q190H	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	600					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACTGGGTGCAGAACGTGCTGT	0.602		NA											20	129					0	0	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123234044	123234044	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:123234044C>T	uc004bkf.2	-	16	2021	c.1840G>A	c.(1840-1842)GAA>AAA	p.E614K	CDK5RAP2_uc004bke.2_5'UTR|CDK5RAP2_uc004bkg.2_Missense_Mutation_p.E614K|CDK5RAP2_uc011lxw.1_5'UTR|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_5'UTR|CDK5RAP2_uc011lya.1_5'UTR|CDK5RAP2_uc004bkh.1_Missense_Mutation_p.E614K|CDK5RAP2_uc004bki.2_Missense_Mutation_p.E413K	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	614					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						CTCCGAATTTCGCTGatctgc	0.269		NA											13	116					0	0	0	0
C5	727	broad.mit.edu	37	9	123758561	123758561	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:123758561C>T	uc004bkv.2	-	22	2838	c.2808G>A	c.(2806-2808)AGG>AGA	p.R936R		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	936					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	AATAGCTTTCCCTTTTGACAC	0.323		NA											18	294					0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139396305	139396305	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:139396305G>A	uc004chz.2	-	30	5533	c.5533C>T	c.(5533-5535)CAG>TAG	p.Q1845*		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1845	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		AGGTGCTGCTGAGTCCACTGC	0.652		NA	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			8	49					0	0	0	0
AGPAT2	10555	broad.mit.edu	37	9	139571495	139571495	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr9:139571495C>T	uc004cii.1	-	3	512	c.410G>A	c.(409-411)GGC>GAC	p.G137D	AGPAT2_uc004cij.1_Missense_Mutation_p.G137D	NM_006412	NP_006403	O15120	PLCB_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 2	137	Helical; (Potential).				phosphatidic acid biosynthetic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_cancers(76;0.0893)|all_epithelial(76;0.231)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.87e-06)|Epithelial(140;0.000123)		GAAGAAGACGCCCCCGAGGTA	0.647		NA											16	202					0	0	0	0
CD99	4267	broad.mit.edu	37	X	2658839	2658839	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:2658839G>A	uc004cqm.2	+	10	726	c.552G>A	c.(550-552)GAG>GAA	p.E184E	CD99_uc010nda.2_Silent_p.E168E|CD99_uc004cqn.2_RNA|CD99_uc004cqo.2_Silent_p.E183E	NM_002414	NP_002405	P14209	CD99_HUMAN	CD99 antigen isoform a precursor	184	Cytoplasmic (Potential).				cell adhesion	cytoplasm|integral to plasma membrane				skin(1)	1						CTCTTTTAGAGAAATAGAAGA	0.522		NA											12	185					0	0	0	0
FRMPD4	9758	broad.mit.edu	37	X	12734553	12734553	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:12734553G>A	uc004cuz.1	+	15	2481	c.1975G>A	c.(1975-1977)GCC>ACC	p.A659T	FRMPD4_uc011mij.1_Missense_Mutation_p.A651T	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	659					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TGGAGACTTCGCCTTGGATGA	0.483		NA											38	402					0	0	0	0
PHKA2	5256	broad.mit.edu	37	X	18959765	18959765	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:18959765G>A	uc004cyv.3	-	8	1176	c.746C>T	c.(745-747)GCG>GTG	p.A249V	PHKA2_uc010nfh.1_RNA|PHKA2_uc010nfi.1_Missense_Mutation_p.A158V	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	249					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					AGATGTCGACGCTCTTGGCAG	0.428		NA											6	96					0	0	0	0
YY2	404281	broad.mit.edu	37	X	21875588	21875588	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:21875588G>A	uc011mjp.1	+	1	986	c.986G>A	c.(985-987)CGC>CAC	p.R329H	MBTPS2_uc004dae.2_Intron|MBTPS2_uc010nfr.2_Intron|YY2_uc010nfq.2_Missense_Mutation_p.R547H|MBTPS2_uc004dab.2_Intron	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	329	Mediates transcriptional repression.|C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						TTCAATTTGCGCACACACTTG	0.532		NA											58	461					0	0	0	0
DMD	1756	broad.mit.edu	37	X	31164450	31164450	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:31164450T>C	uc004dda.1	-	76	11123	c.10879A>G	c.(10879-10881)ATG>GTG	p.M3627V	DMD_uc004dcq.1_Missense_Mutation_p.M898V|DMD_uc004dcr.1_Missense_Mutation_p.M1047V|DMD_uc004dcs.1_Missense_Mutation_p.M1057V|DMD_uc004dct.1_Missense_Mutation_p.M1167V|DMD_uc004dcu.1_Missense_Mutation_p.M1167V|DMD_uc004dcv.1_Missense_Mutation_p.M1154V|DMD_uc004dcw.2_Missense_Mutation_p.M2283V|DMD_uc004dcx.2_Missense_Mutation_p.M2286V|DMD_uc004dcz.2_Missense_Mutation_p.M3504V|DMD_uc004dcy.1_Missense_Mutation_p.M3623V|DMD_uc004ddb.1_Missense_Mutation_p.M3619V|DMD_uc004dcm.1_Missense_Mutation_p.M559V|DMD_uc004dcn.1_Missense_Mutation_p.M546V|DMD_uc004dco.1_Missense_Mutation_p.M559V|DMD_uc004dcp.1_Missense_Mutation_p.M546V|DMD_uc011mkb.1_Missense_Mutation_p.M449V	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3627					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				CGGAGCAGCATAGGCTGACTG	0.498		NA											12	96					0	0	0	0
FAM47A	158724	broad.mit.edu	37	X	34149420	34149420	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:34149420G>A	uc004ddg.2	-	1	1009	c.976C>T	c.(976-978)CGC>TGC	p.R326C		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	326										ovary(4)|central_nervous_system(1)	5						GGCTCCGGGCGGAGACTGGAC	0.617		NA											4	48					0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37028001	37028001	+	Silent	SNP	C	C	T	rs149060980	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:37028001C>T	uc004ddl.1	+	1	1532	c.1518C>T	c.(1516-1518)CGC>CGT	p.R506R		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	506										ovary(3)	3						CCAAGACACGCGTATCTCATC	0.617		NA											10	178					0	0	0	0
CYBB	1536	broad.mit.edu	37	X	37655262	37655262	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:37655262T>C	uc004ddr.2	+	6	603	c.542T>C	c.(541-543)GTC>GCC	p.V181A	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Missense_Mutation_p.V149A|CYBB_uc011mkg.1_Intron	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	181	Helical; (Potential).|Ferric oxidoreductase.				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						ACTGGAGTTGTCATCACGCTG	0.388		NA											10	151					0	0	0	0
USP9X	8239	broad.mit.edu	37	X	41075704	41075704	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:41075704G>C	uc004dfb.2	+	35	6517	c.5884G>C	c.(5884-5886)GAT>CAT	p.D1962H	USP9X_uc004dfc.2_Missense_Mutation_p.D1962H	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1962					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						AATAGACCAAGATGATGAGTT	0.393		NA											14	185					0	0	0	0
SLC38A5	92745	broad.mit.edu	37	X	48319088	48319088	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:48319088G>A	uc010nid.2	-	14	1193	c.1015C>T	c.(1015-1017)CGC>TGC	p.R339C	SLC38A5_uc004djk.3_Missense_Mutation_p.R288C	NM_033518	NP_277053	Q8WUX1	S38A5_HUMAN	solute carrier family 38, member 5	339	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane				ovary(3)	3						ACGGCCAGGCGCACACAGAGG	0.582		NA											9	82					0	0	0	0
TBC1D25	4943	broad.mit.edu	37	X	48417690	48417690	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:48417690C>T	uc004dka.1	+	5	772	c.661C>T	c.(661-663)CGC>TGC	p.R221C	TBC1D25_uc011mly.1_Missense_Mutation_p.R163C|TBC1D25_uc004dkb.1_5'UTR|TBC1D25_uc011mlz.1_5'UTR|TBC1D25_uc011mma.1_5'UTR|TBC1D25_uc004dkc.1_5'UTR|TBC1D25_uc011mmb.1_Missense_Mutation_p.R225C|TBC1D25_uc011mmc.1_5'UTR|TBC1D25_uc011mmd.1_5'UTR	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	221						intracellular	Rab GTPase activator activity			ovary(1)	1						CGAGGAGTTGCGCCTGCGGAT	0.582		NA											4	41					0	0	0	0
GNL3L	54552	broad.mit.edu	37	X	54574764	54574764	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:54574764C>T	uc004dth.1	+	9	872	c.733C>T	c.(733-735)CGC>TGC	p.R245C	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	245					ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						GAACTATTGCCGCCTTGGTGA	0.542		NA											5	75					0	0	0	0
FAM123B	139285	broad.mit.edu	37	X	63412011	63412011	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:63412011C>G	uc004dvo.2	-	2	1429	c.1156G>C	c.(1156-1158)GAA>CAA	p.E386Q		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	386	Glu-rich.				Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						tccacctcttcttcctcttct	0.348		NA											12	158					0	0	0	0
HEPH	9843	broad.mit.edu	37	X	65413477	65413477	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:65413477C>A	uc011moz.1	+	8	1435	c.1375C>A	c.(1375-1377)CTG>ATG	p.L459M	HEPH_uc004dwn.2_Missense_Mutation_p.L459M|HEPH_uc004dwo.2_Missense_Mutation_p.L189M|HEPH_uc010nkr.2_Missense_Mutation_p.L459M|HEPH_uc011mpa.1_Missense_Mutation_p.L459M	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	456	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TCTTGGAATCCTGGGTGAGGA	0.418		NA											11	79					4.69e-08	5e-08	1	0
EDA	1896	broad.mit.edu	37	X	69255292	69255292	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:69255292G>A	uc004dxs.2	+	8	1251	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	EDA_uc004dxr.2_Missense_Mutation_p.E335K|EDA_uc011mpj.1_Missense_Mutation_p.E332K	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	337	Extracellular (Potential).				cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding			ovary(2)|large_intestine(1)	3						ACGCAGCATCGAGACGGGCAA	0.552		NA											9	58					0	0	0	0
KIF4A	24137	broad.mit.edu	37	X	69639936	69639936	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:69639936G>A	uc004dyg.2	+	31	3647	c.3520G>A	c.(3520-3522)GAG>AAG	p.E1174K	KIF4A_uc010nkw.2_Missense_Mutation_p.E1174K	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	1174	Globular.|Interaction with PRC1.				anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						GTGCGATGTGGAGCAGGTGCT	0.507		NA											8	59					0	0	0	0
DLG3	1741	broad.mit.edu	37	X	69722041	69722041	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:69722041G>C	uc004dyi.1	+	19	2704	c.2376G>C	c.(2374-2376)GAG>GAC	p.E792D	DLG3_uc004dyj.1_Missense_Mutation_p.E487D|DLG3_uc011mpn.1_Missense_Mutation_p.E340D	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	792	Guanylate kinase-like.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					CACTGGAAGAGATTTATAACA	0.443		NA											4	52					0	0	0	0
ZMYM3	9203	broad.mit.edu	37	X	70472945	70472945	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:70472945G>A	uc004dzh.1	-	2	248	c.161C>T	c.(160-162)TCG>TTG	p.S54L	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Missense_Mutation_p.S54L|ZMYM3_uc004dzj.1_Missense_Mutation_p.S54L|ZMYM3_uc011mpu.1_5'Flank|ZMYM3_uc004dzk.3_Missense_Mutation_p.S54L|ZMYM3_uc004dzl.3_Missense_Mutation_p.S54L|ZMYM3_uc004dzm.3_Missense_Mutation_p.S54L	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	54					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					CAGGGCTCCCGAGGATGGAGA	0.607		NA									OREG0019858	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	51					0	0	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960813	73960813	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:73960813C>G	uc004eby.2	-	3	4196	c.3579G>C	c.(3577-3579)CAG>CAC	p.Q1193H		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1193					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TGGTGTTTTTCTGAGAAGAGC	0.428		NA											17	257					0	0	0	0
ATRX	546	broad.mit.edu	37	X	76937131	76937131	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:76937131G>C	uc004ecp.3	-	9	3849	c.3617C>G	c.(3616-3618)TCT>TGT	p.S1206C	ATRX_uc004ecq.3_Missense_Mutation_p.S1168C|ATRX_uc004eco.3_Missense_Mutation_p.S991C|ATRX_uc004ecr.2_Missense_Mutation_p.S1138C|ATRX_uc010nlx.1_Missense_Mutation_p.S1177C|ATRX_uc010nly.1_Missense_Mutation_p.S1151C	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1206	Poly-Ser.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTCTATATCAGAAGAAGATGA	0.378		NA	Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						13	320					0	0	0	0
TAF9B	51616	broad.mit.edu	37	X	77395061	77395061	+	Silent	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:77395061G>T	uc004eda.2	-	1	119	c.48C>A	c.(46-48)GCC>GCA	p.A16A		NM_015975	NP_057059	Q9HBM6	TAF9B_HUMAN	transcription associated factor 9B	16					negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell growth|transcription initiation, DNA-dependent	transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding				0						CACTTACCAAGGCATCTCTCG	0.657		NA											15	222					4.15e-12	4.55e-12	1	0
BRWD3	254065	broad.mit.edu	37	X	79999689	79999689	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:79999689G>A	uc004edt.2	-	8	918	c.655C>T	c.(655-657)CGT>TGT	p.R219C	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.R48C|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_5'UTR|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_5'UTR|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_5'UTR|BRWD3_uc004eea.2_5'UTR|BRWD3_uc004eeb.2_Intron	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	219	WD 2.									ovary(4)	4						GAGTGTCCACGAAGTGTAGCA	0.403		NA											12	174					0	0	0	0
SYTL4	94121	broad.mit.edu	37	X	99956326	99956326	+	Splice_Site	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:99956326C>T	uc004egd.3	-	6	683	c.327_splice	c.e6-1	p.I109_splice	SYTL4_uc010nnc.2_Splice_Site_p.I109_splice|SYTL4_uc004ege.3_Splice_Site_p.I109_splice|SYTL4_uc004egf.3_Splice_Site_p.I109_splice|SYTL4_uc004egg.3_Splice_Site_p.I109_splice	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4						exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTTCAACTCTCTGGGAAGAAA	0.458		NA											6	70					0	0	0	0
RAB40AL	282808	broad.mit.edu	37	X	102192729	102192729	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:102192729C>G	uc004ejs.2	+	1	530	c.483C>G	c.(481-483)TTC>TTG	p.F161L		NM_001031834	NP_001027004	P0C0E4	RB40L_HUMAN	RAB40A, member RAS oncogene family-like	161					protein transport|small GTPase mediated signal transduction	mitochondrion|plasma membrane	GTP binding			ovary(2)	2						TGTGCAATTTCAACATCATAG	0.592		NA											6	100					0	0	0	0
GLRA4	441509	broad.mit.edu	37	X	102979153	102979153	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:102979153G>T	uc011mse.1	-	4	768	c.347C>A	c.(346-348)TCT>TAT	p.S116Y	GLRA4_uc010nou.2_Missense_Mutation_p.S116Y	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	116	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GAGGTCCAGAGAGTCATCAGG	0.547		NA											24	243					1.85e-09	2.01e-09	1	0
NRK	203447	broad.mit.edu	37	X	105152976	105152976	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:105152976C>T	uc004emd.2	+	13	1646	c.1343C>T	c.(1342-1344)CCA>CTA	p.P448L	NRK_uc010npc.1_Missense_Mutation_p.P116L	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	448	Gln-rich.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GTGTTCATGCCACTACAGGCT	0.557		NA								HNSCC(51;0.14)			10	70					0	0	0	0
PRPS1	5631	broad.mit.edu	37	X	106885676	106885676	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:106885676G>T	uc004ene.3	+	4	691	c.486G>T	c.(484-486)TGG>TGT	p.W162C	PRPS1_uc010npg.2_Missense_Mutation_p.W129C|PRPS1_uc011msj.1_Intron	NM_002764	NP_002755	P60891	PRPS1_HUMAN	phosphoribosyl pyrophosphate synthetase 1	162					5-phosphoribose 1-diphosphate biosynthetic process|hypoxanthine biosynthetic process|nervous system development|nucleoside metabolic process|purine nucleotide biosynthetic process|pyrimidine nucleotide biosynthetic process|ribonucleoside monophosphate biosynthetic process|urate biosynthetic process	cytosol	ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			breast(3)|large_intestine(1)	4						TCTCTGAGTGGAGGAACTGCA	0.433		NA											21	203					2.38e-13	2.61e-13	1	0
MID2	11043	broad.mit.edu	37	X	107084402	107084402	+	Silent	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:107084402G>A	uc004enl.2	+	2	1080	c.507G>A	c.(505-507)ACG>ACA	p.T169T	MID2_uc004enk.2_Silent_p.T169T	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	169	B box-type 1; degenerate.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						TGCGGGCCACGCACCCCAACA	0.552		NA											8	72					0	0	0	0
KCNE1L	23630	broad.mit.edu	37	X	108868222	108868222	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:108868222G>A	uc004eoh.2	-	1	172	c.28C>T	c.(28-30)CGA>TGA	p.R10*		NM_012282	NP_036414	Q9UJ90	KCE1L_HUMAN	potassium voltage-gated channel, Isk-related	10					regulation of heart contraction	voltage-gated potassium channel complex					0						AGAAGGGTTCGCAGCCGCTGG	0.682		NA											3	17					0	0	0	0
ALG13	79868	broad.mit.edu	37	X	110924449	110924449	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:110924449G>T	uc011msy.1	+	1	37	c.3G>T	c.(1-3)ATG>ATT	p.M1I	ALG13_uc004epi.1_Missense_Mutation_p.M1I|ALG13_uc011msw.1_5'UTR|ALG13_uc011msx.1_5'UTR|ALG13_uc011msz.1_5'UTR|ALG13_uc011mta.1_5'UTR|ALG13_uc011mtb.1_5'UTR			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	1					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						CCCGCGCCATGAAGTGCGTGT	0.602		NA											27	327					9.04e-19	9.99e-19	1	0
DOCK11	139818	broad.mit.edu	37	X	117758580	117758580	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:117758580C>G	uc004eqp.2	+	32	3613	c.3550C>G	c.(3550-3552)CGA>GGA	p.R1184G	DOCK11_uc004eqq.2_Missense_Mutation_p.R963G	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1184					blood coagulation	cytosol	GTP binding			ovary(3)	3						ATTAGCAGGTCGAGATACCTT	0.358		NA											28	365					0	0	0	0
SEPT6	23157	broad.mit.edu	37	X	118786948	118786948	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:118786948C>G	uc004erv.2	-	4	662	c.397G>C	c.(397-399)GAG>CAG	p.E133Q	SEPT6_uc010nqk.2_RNA|SEPT6_uc004ers.2_Missense_Mutation_p.E133Q|SEPT6_uc004ert.2_Missense_Mutation_p.E133Q|SEPT6_uc004eru.2_Missense_Mutation_p.E133Q|SEPT6_uc004erw.2_Missense_Mutation_p.E75Q|SEPT6_uc011mtv.1_Missense_Mutation_p.E75Q|SEPT6_uc011mtw.1_Missense_Mutation_p.E163Q	NM_015129	NP_055944	Q14141	SEPT6_HUMAN	septin 6 isoform B	133					cell cycle|cytokinesis|interspecies interaction between organisms	cleavage furrow|condensed chromosome kinetochore|midbody|septin complex|spindle	GTP binding|protein binding			lung(1)|ovary(1)|prostate(1)|kidney(1)	4						ATCTTTAGCTCTTCCTGCAGG	0.507		NA											14	145					0	0	0	0
CT47B1	643311	broad.mit.edu	37	X	120009419	120009419	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:120009419C>T	uc011muc.1	-	1	361	c.106G>A	c.(106-108)GGC>AGC	p.G36S		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	36											0						CCGGAGTCGCCGCCCTCCTGG	0.731		NA											13	104					0	0	0	0
THOC2	57187	broad.mit.edu	37	X	122758480	122758480	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:122758480T>C	uc004etu.2	-	26	3130	c.3098A>G	c.(3097-3099)GAA>GGA	p.E1033G	THOC2_uc004etw.1_5'Flank	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1033					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GGCTTCATTTTCAGTACAGCT	0.348		NA											17	350					0	0	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185700	127185700	+	Silent	SNP	G	G	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:127185700G>T	uc004eum.2	-	1	683	c.486C>A	c.(484-486)GTC>GTA	p.V162V		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	162						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						CAGTGCAAGTGACCCCATCTC	0.582		NA											14	293					3.27e-08	3.5e-08	1	0
SLC25A14	9016	broad.mit.edu	37	X	129483264	129483264	+	Silent	SNP	C	C	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:129483264C>A	uc004evn.1	+	5	570	c.357C>A	c.(355-357)ACC>ACA	p.T119T	SLC25A14_uc011mut.1_Silent_p.T84T|SLC25A14_uc011muu.1_Silent_p.T119T|SLC25A14_uc010nrg.2_Silent_p.T116T|SLC25A14_uc004evo.1_5'UTR|SLC25A14_uc004evp.1_Silent_p.T119T|SLC25A14_uc004evq.1_Silent_p.T116T|SLC25A14_uc004evr.1_Silent_p.T116T	NM_003951	NP_003942	O95258	UCP5_HUMAN	solute carrier family 25, member 14 isoform	119	Solcar 1.|Helical; Name=2; (Potential).				aerobic respiration|mitochondrial transport	integral to plasma membrane|mitochondrial inner membrane	binding			ovary(1)	1						CATATGGCACCATTAAAATTG	0.343		NA											11	130					0.00829132	0.00840967	1	0
IGSF1	3547	broad.mit.edu	37	X	130409661	130409661	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:130409661C>T	uc004ewd.2	-	16	3213	c.2975G>A	c.(2974-2976)CGA>CAA	p.R992Q	IGSF1_uc004ewe.3_Missense_Mutation_p.R986Q|IGSF1_uc004ewf.2_Missense_Mutation_p.R972Q	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	992	Extracellular (Potential).|Ig-like C2-type 10.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GACCGGCCCTCGGCACCAGAG	0.522		NA											17	228					0	0	0	0
CD40LG	959	broad.mit.edu	37	X	135741392	135741392	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:135741392G>C	uc004faa.2	+	5	676	c.604G>C	c.(604-606)GAG>CAG	p.E202Q	CD40LG_uc010nsd.2_Missense_Mutation_p.E181Q	NM_000074	NP_000065	P29965	CD40L_HUMAN	CD40 ligand	202	Extracellular (Potential).				anti-apoptosis|B cell proliferation|inflammatory response|isotype switching|leukocyte cell-cell adhesion|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of interleukin-12 production	extracellular space|integral to plasma membrane|soluble fraction	CD40 receptor binding|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)				Atorvastatin(DB01076)	CGGTAGATTCGAGAGAATCTT	0.483		NA							Immune_Deficiency_with_Hyper-IgM				55	494					0	0	0	0
SOX3	6658	broad.mit.edu	37	X	139586056	139586056	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:139586056C>T	uc004fbd.1	-	1	1170	c.1170G>A	c.(1168-1170)CAG>CAA	p.Q390Q		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	390					face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					GGCACGCGCGCTGAGAGTGCG	0.647		NA											4	13					0	0	0	0
MAGEA8	4107	broad.mit.edu	37	X	149013598	149013598	+	Silent	SNP	C	C	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:149013598C>T	uc004fdw.1	+	3	767	c.552C>T	c.(550-552)TGC>TGT	p.C184C		NM_005364	NP_005355	P43361	MAGA8_HUMAN	melanoma antigen family A, 8	184	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TTGTCACCTGCCTGGGCCTCT	0.552		NA											6	102					0	0	0	0
FLNA	2316	broad.mit.edu	37	X	153577807	153577807	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:153577807A>G	uc004fkk.2	-	47	7928	c.7679T>C	c.(7678-7680)GTG>GCG	p.V2560A	FLNA_uc004fki.2_Missense_Mutation_p.V600A|FLNA_uc011mzn.1_Missense_Mutation_p.V693A|FLNA_uc010nuu.1_Missense_Mutation_p.V2552A	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2560	Self-association site, tail.|Filamin 24.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CTTGGCCACCACCTTGCTGGC	0.652		NA											17	176					0	0	0	0
NPHP4	261734	broad.mit.edu	37	1	5964821	5964822	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:5964821_5964822delAC	uc001alq.1	-	16	2264_2265	c.1998_1999delGT	c.(1996-2001)GTGTATfs	p.V666fs	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_RNA|NPHP4_uc009vlu.1_RNA	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	666_667					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		AAGGTGAAATACACAGTCTTTG	0.589		NA											11	111	---	---	---	---	NA	NA	NA	NA
RPL22	6146	broad.mit.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:6257785delT	uc001amd.2	-	2	90	c.44delA	c.(43-45)AAGfs	p.K15fs	RPL22_uc001ame.2_Frame_Shift_Del_p.K15fs	NM_000983	NP_000974	P35268	RL22_HUMAN	ribosomal protein L22 proprotein	15					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	heparin binding|RNA binding|structural constituent of ribosome				0	Ovarian(185;0.0634)	all_cancers(23;2.78e-38)|all_epithelial(116;8.88e-22)|all_lung(118;7.95e-08)|Lung NSC(185;1.6e-06)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;4.53e-38)|GBM - Glioblastoma multiforme(13;3.33e-32)|OV - Ovarian serous cystadenocarcinoma(86;2.8e-19)|Colorectal(212;6.8e-08)|COAD - Colon adenocarcinoma(227;8.04e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00311)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		AACTTGCTTCTTTTTTTTGCC	0.398		NA	T	RUNX1	AML|CML								10	83	---	---	---	---	NA	NA	NA	NA
PHF13	148479	broad.mit.edu	37	1	6680128	6680128	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:6680128delG	uc001aob.3	+	3	778	c.407delG	c.(406-408)AGGfs	p.R136fs		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13	136					cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		GAGGGGTACAGGGGGGGCTTG	0.522		NA											10	111	---	---	---	---	NA	NA	NA	NA
C1orf141	400757	broad.mit.edu	37	1	67592911	67592911	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:67592911delT	uc001ddl.1	-	2	124	c.13delA	c.(13-15)ATCfs	p.I5fs	C1orf141_uc001ddm.1_Frame_Shift_Del_p.I5fs|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	5										ovary(1)	1						TTCTCTAGGATTTTTTCTGCC	0.313		NA											15	218	---	---	---	---	NA	NA	NA	NA
GNG12	55970	broad.mit.edu	37	1	68171151	68171151	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:68171151delT	uc001dea.1	-	4	394	c.202delA	c.(202-204)ACTfs	p.T68fs		NM_018841	NP_061329	Q9UBI6	GBG12_HUMAN	G-protein gamma-12 subunit precursor	68					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	heterotrimeric G-protein complex	signal transducer activity				0						ATGATGCAAGTTTTTTTATCC	0.438		NA											31	217	---	---	---	---	NA	NA	NA	NA
SYT6	148281	broad.mit.edu	37	1	114641761	114641761	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:114641761delT	uc001eev.2	-	5	1314	c.1064delA	c.(1063-1065)AACfs	p.N355fs	SYT6_uc001eeu.2_5'UTR	NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	440	Cytoplasmic (Potential).|C2 2.				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTGATCCATGTTTTCCGGGGG	0.488		NA											28	309	---	---	---	---	NA	NA	NA	NA
ZBTB7B	51043	broad.mit.edu	37	1	154987396	154987397	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:154987396_154987397delGT	uc001fgk.3	+	3	418_419	c.260_261delGT	c.(259-261)GGTfs	p.G87fs	ZBTB7B_uc009wpa.2_Frame_Shift_Del_p.G87fs|ZBTB7B_uc001fgj.3_Frame_Shift_Del_p.G121fs|ZBTB7B_uc010peq.1_Frame_Shift_Del_p.G121fs|ZBTB7B_uc001fgl.3_Frame_Shift_Del_p.G87fs	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	87	BTB.				cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCAGGGGCCGGTGTGTGTGAGC	0.629		NA											8	70	---	---	---	---	NA	NA	NA	NA
IQGAP3	128239	broad.mit.edu	37	1	156521543	156521543	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:156521543delG	uc001fpf.2	-	15	1763	c.1688delC	c.(1687-1689)CCTfs	p.P563fs	IQGAP3_uc009wsb.1_Frame_Shift_Del_p.P520fs	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	563					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					ATGGTACCGAGGGGCGACAGG	0.562		NA											10	86	---	---	---	---	NA	NA	NA	NA
NMNAT2	23057	broad.mit.edu	37	1	183255842	183255842	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:183255842delG	uc001gqc.1	-	5	738	c.403delC	c.(403-405)CAGfs	p.Q135fs	NMNAT2_uc001gqb.1_Frame_Shift_Del_p.Q130fs|NMNAT2_uc001gqd.2_Frame_Shift_Del_p.Q30fs	NM_015039	NP_055854	Q9BZQ4	NMNA2_HUMAN	nicotinamide mononucleotide adenylyltransferase	135					water-soluble vitamin metabolic process	Golgi membrane|nucleus	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity			skin(1)	1						TAAATGGGCTGGGGGGTCTCG	0.453		NA											8	117	---	---	---	---	NA	NA	NA	NA
NCF2	4688	broad.mit.edu	37	1	183543721	183543723	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:183543721_183543723delCTT	uc001gqj.3	-	4	675_677	c.400_402delAAG	c.(400-402)AAGdel	p.K134del	NCF2_uc010pod.1_Intron|NCF2_uc010poe.1_Intron|NCF2_uc001gqk.3_In_Frame_Del_p.K134del	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	134	TPR 3.				cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						TCCATTCCTCCTTCTTGGCATAC	0.448		NA											14	192	---	---	---	---	NA	NA	NA	NA
ZNF124	7678	broad.mit.edu	37	1	247319909	247319909	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:247319909delT	uc001ick.2	-	4	1154	c.1015delA	c.(1015-1017)ACTfs	p.T339fs	ZNF124_uc001ici.2_Intron|ZNF124_uc001icj.1_Frame_Shift_Del_p.T277fs	NM_003431	NP_003422	Q15973	ZN124_HUMAN	zinc finger protein 124	339	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	all_cancers(71;5.07e-05)|all_epithelial(71;8.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00739)			CCAGTATGAGTTTTTTTATGC	0.368		NA											12	128	---	---	---	---	NA	NA	NA	NA
OR14C36	127066	broad.mit.edu	37	1	248512384	248512384	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr1:248512384delT	uc010pzl.1	+	1	308	c.308delT	c.(307-309)GTTfs	p.V103fs		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTCCTCGTGGTTTTTTTTGTA	0.478		NA											8	98	---	---	---	---	NA	NA	NA	NA
GJD4	219770	broad.mit.edu	37	10	35897554	35897554	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:35897554delA	uc001iyy.1	+	2	1271	c.1113delA	c.(1111-1113)TGAfs	p.*371fs		NM_153368	NP_699199	Q96KN9	CXD4_HUMAN	connexin40.1	371					cell communication	connexon complex|integral to membrane				large_intestine(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						AGTGGGTGTGAAAAAAACAGC	0.433		NA											3	5	---	---	---	---	NA	NA	NA	NA
HECTD2	143279	broad.mit.edu	37	10	93247481	93247481	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:93247481delA	uc001khl.2	+	11	1237	c.1137delA	c.(1135-1137)GCAfs	p.A379fs	LOC100188947_uc010qnl.1_Intron|HECTD2_uc010qnm.1_Frame_Shift_Del_p.A383fs|HECTD2_uc001khm.2_RNA|HECTD2_uc009xty.1_Intron|HECTD2_uc001khn.1_Frame_Shift_Del_p.A29fs	NM_182765	NP_877497	Q5U5R9	HECD2_HUMAN	HECT domain containing 2 isoform a	379					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			skin(1)	1						CTGTAGCTGCAAAAAAAATCA	0.318		NA											8	220	---	---	---	---	NA	NA	NA	NA
ZDHHC16	84287	broad.mit.edu	37	10	99215505	99215507	+	In_Frame_Del	DEL	AAG	AAG	-	rs146287872	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:99215505_99215507delAAG	uc001knj.2	+	10	1262_1264	c.913_915delAAG	c.(913-915)AAGdel	p.K306del	ZDHHC16_uc001knp.2_In_Frame_Del_p.K236del|ZDHHC16_uc001knk.2_In_Frame_Del_p.K306del|ZDHHC16_uc001knl.2_In_Frame_Del_p.K290del|ZDHHC16_uc001knm.2_In_Frame_Del_p.K225del|ZDHHC16_uc001knn.2_In_Frame_Del_p.K267del|ZDHHC16_uc010qow.1_In_Frame_Del_p.K288del|ZDHHC16_uc009xvq.2_RNA|ZDHHC16_uc001kno.2_In_Frame_Del_p.K272del|ZDHHC16_uc009xvr.2_In_Frame_Del_p.K297del	NM_198046	NP_932163	Q969W1	ZDH16_HUMAN	Abl-philin 2 isoform 1	306	Cytoplasmic (Potential).				apoptosis	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.0846)		Epithelial(162;5.81e-10)|all cancers(201;4.19e-08)		GCACATCAACAAGAAGGAGAGAC	0.532		NA											13	199	---	---	---	---	NA	NA	NA	NA
DPYSL4	10570	broad.mit.edu	37	10	134000594	134000594	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr10:134000594delC	uc009ybb.2	+	1	181	c.27delC	c.(25-27)ATCfs	p.I9fs		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	9					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		AGAAAAGCATCCCCCGGATCA	0.502		NA											4	6	---	---	---	---	NA	NA	NA	NA
MUC5B	727897	broad.mit.edu	37	11	1269737	1269737	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:1269737delC	uc009ycr.1	+	50	13337	c.13211delC	c.(13210-13212)ACCfs	p.T4404fs	MUC5B_uc001ltb.2_Frame_Shift_Del_p.T3879fs	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3876	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TTCACAGTCACCCCCTCCTCC	0.647		NA											12	135	---	---	---	---	NA	NA	NA	NA
PITPNM1	9600	broad.mit.edu	37	11	67269818	67269818	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:67269818delC	uc001olx.2	-	3	549	c.360delG	c.(358-360)GGGfs	p.G120fs	PITPNM1_uc001oly.2_Frame_Shift_Del_p.G120fs|PITPNM1_uc001olz.2_Frame_Shift_Del_p.G120fs	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	120					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						TTGGCTGCTGCCCCCCATCAG	0.607		NA											15	125	---	---	---	---	NA	NA	NA	NA
MOGAT2	80168	broad.mit.edu	37	11	75431143	75431143	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:75431143delG	uc010rru.1	+	2	198	c.198delG	c.(196-198)CAGfs	p.Q66fs	MOGAT2_uc001oww.1_Frame_Shift_Del_p.Q66fs|MOGAT2_uc010rrv.1_5'UTR	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	66					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					AGCCACGGCAGGGGGGCCGGC	0.562		NA											29	448	---	---	---	---	NA	NA	NA	NA
FAT3	120114	broad.mit.edu	37	11	92533399	92533399	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:92533399delC	uc001pdj.3	+	9	7237	c.7220delC	c.(7219-7221)GCCfs	p.A2407fs		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2407	Cadherin 22.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGTGAATTAGCCCCCCGGGGC	0.443		NA								TCGA Ovarian(4;0.039)			22	157	---	---	---	---	NA	NA	NA	NA
TRPC6	7225	broad.mit.edu	37	11	101362286	101362287	+	Splice_Site	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:101362286_101362287insT	uc001pgk.3	-	3	1553	c.1128_splice	c.e3+1	p.K376_splice	TRPC6_uc009ywy.2_Intron|TRPC6_uc009ywz.1_Splice_Site_p.K376_splice	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,						axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CCTGACCTTACTTTTTTTACTT	0.391		NA											10	281	---	---	---	---	NA	NA	NA	NA
EXPH5	23086	broad.mit.edu	37	11	108412381	108412381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:108412381delT	uc001pkk.2	-	2	389	c.278delA	c.(277-279)AATfs	p.N93fs	EXPH5_uc010rwa.1_Frame_Shift_Del_p.N17fs	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	93					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TTTCTTACCATTTTTTGCCAT	0.323		NA											9	111	---	---	---	---	NA	NA	NA	NA
SORL1	6653	broad.mit.edu	37	11	121475905	121475905	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr11:121475905delA	uc001pxx.2	+	34	4815	c.4735delA	c.(4735-4737)AAAfs	p.K1579fs	SORL1_uc010rzp.1_Frame_Shift_Del_p.K425fs|SORL1_uc010rzq.1_Frame_Shift_Del_p.K194fs	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1579	Extracellular (Potential).|Fibronectin type-III 1.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GATGAGGCCCAAAAAAATGCC	0.438		NA											26	210	---	---	---	---	NA	NA	NA	NA
FOXM1	2305	broad.mit.edu	37	12	2968088	2968088	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:2968088delG	uc001qlf.2	-	9	2273	c.2008delC	c.(2008-2010)CTTfs	p.L670fs	uc001qld.2_Intron|FOXM1_uc001qle.2_Frame_Shift_Del_p.L708fs|FOXM1_uc001qlg.2_Frame_Shift_Del_p.L655fs|FOXM1_uc009zea.2_Frame_Shift_Del_p.L655fs|FOXM1_uc009zeb.2_Frame_Shift_Del_p.L654fs	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	670					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			GGTGATTCAAGGGGGGGAGCA	0.577		NA											13	115	---	---	---	---	NA	NA	NA	NA
PIK3C2G	5288	broad.mit.edu	37	12	18435201	18435202	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:18435201_18435202insT	uc001rdt.2	+	2	302_303	c.186_187insT	c.(184-189)ACCTTTfs	p.T62fs	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Frame_Shift_Ins_p.T62fs|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	62_63					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ATGAAAACACCTTTTTTGTGCC	0.406		NA											11	132	---	---	---	---	NA	NA	NA	NA
MED21	9412	broad.mit.edu	37	12	27181336	27181337	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:27181336_27181337delCA	uc001rhp.1	+	4	407_408	c.377_378delCA	c.(376-378)GCAfs	p.A126fs	MED21_uc009zjh.1_RNA	NM_004264	NP_004255	Q13503	MED21_HUMAN	mediator complex subunit 21	126					positive regulation of transcription from RNA polymerase II promoter	mediator complex	DNA-directed RNA polymerase activity|transcription coactivator activity				0	Colorectal(261;0.0847)					GCTGATATTGCACAGTCACAGC	0.45		NA											13	218	---	---	---	---	NA	NA	NA	NA
ZCRB1	85437	broad.mit.edu	37	12	42707703	42707703	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:42707703delT	uc001rmz.2	-	6	628	c.419delA	c.(418-420)AAGfs	p.K140fs	PPHLN1_uc001rmy.2_Intron	NM_033114	NP_149105	Q8TBF4	ZCRB1_HUMAN	zinc finger CCHC-type and RNA binding motif 1	140	Poly-Lys.				mRNA processing	nucleoplasm|U12-type spliceosomal complex	nucleotide binding|RNA binding|zinc ion binding			skin(1)	1	all_cancers(12;0.000348)|Breast(8;0.221)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0689)		AGGAGCTTTCTTTTTTTTCTT	0.343		NA											21	98	---	---	---	---	NA	NA	NA	NA
MLL2	8085	broad.mit.edu	37	12	49445525	49445526	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:49445525_49445526insG	uc001rta.3	-	10	1940_1941	c.1940_1941insC	c.(1939-1941)CCAfs	p.P647fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	647	15 X 5 AA repeats of S/P-P-P-E/P-E/A.|Pro-rich.|14.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						ATACCTCAGGTGGGGGGGACAT	0.634		NA	N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			8	73	---	---	---	---	NA	NA	NA	NA
LRP1	4035	broad.mit.edu	37	12	57572242	57572242	+	Frame_Shift_Del	DEL	G	G	-	rs139915490		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:57572242delG	uc001snd.2	+	27	4928	c.4462delG	c.(4462-4464)GGGfs	p.G1488fs		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1488	Extracellular (Potential).|LDL-receptor class B 11.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GACGCTGTACGGGGGGGAGGT	0.587		NA											18	149	---	---	---	---	NA	NA	NA	NA
PPM1H	57460	broad.mit.edu	37	12	63195772	63195772	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:63195772delC	uc001srk.3	-	3	729	c.580delG	c.(580-582)GAGfs	p.E194fs		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	194	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		TCAGGCTCCTCCCCCAGGCAG	0.716		NA											9	136	---	---	---	---	NA	NA	NA	NA
TMTC3	160418	broad.mit.edu	37	12	88553917	88553917	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:88553917delT	uc001tau.2	+	5	755	c.535delT	c.(535-537)TTTfs	p.F179fs	TMTC3_uc009zsm.2_RNA	NM_181783	NP_861448	Q6ZXV5	TMTC3_HUMAN	transmembrane and tetratricopeptide repeat	179	Helical; (Potential).					integral to membrane	binding			skin(1)	1						CTTGACAGTGTTTTTAGTGGC	0.318		NA											21	272	---	---	---	---	NA	NA	NA	NA
GALNT4	8693	broad.mit.edu	37	12	89917031	89917031	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:89917031delA	uc001tbd.2	-	1	1505	c.1296delT	c.(1294-1296)TTTfs	p.F432fs	POC1B_uc001tba.2_Intron|POC1B_uc001tbb.2_Intron|POC1B_uc001tbc.2_Intron|POC1B_uc010sun.1_Intron|GALNT4_uc001tbe.2_Frame_Shift_Del_p.F429fs|GALNT4_uc010suo.1_Frame_Shift_Del_p.F124fs	NM_003774	NP_003765	Q8N4A0	GALT4_HUMAN	polypeptide N-acetylgalactosaminyltransferase 4	432	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0						GTAAATTAGGAAAAACGTTTT	0.403		NA											14	168	---	---	---	---	NA	NA	NA	NA
FAM71C	196472	broad.mit.edu	37	12	100042354	100042354	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:100042354delA	uc001tgn.2	+	1	824	c.402delA	c.(400-402)GTAfs	p.V134fs	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	134											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		ACAACAGCGTAAAAAAACAGC	0.478		NA											14	145	---	---	---	---	NA	NA	NA	NA
TBX5	6910	broad.mit.edu	37	12	114832546	114832547	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr12:114832546_114832547insT	uc001tvo.2	-	6	1157_1158	c.662_663insA	c.(661-663)AAGfs	p.K221fs	TBX5_uc001tvp.2_Frame_Shift_Ins_p.K221fs|TBX5_uc001tvq.2_Frame_Shift_Ins_p.K171fs|TBX5_uc010syv.1_Frame_Shift_Ins_p.K221fs	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	221	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		TCAGGCTTACCTTGTGGTTCTG	0.485		NA											8	211	---	---	---	---	NA	NA	NA	NA
KIAA0564	23078	broad.mit.edu	37	13	42461382	42461382	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:42461382delG	uc001uyj.2	-	6	837	c.767delC	c.(766-768)CCTfs	p.P256fs	KIAA0564_uc001uyk.2_Frame_Shift_Del_p.P256fs	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	256						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		AGAACGAAGAGGGGGGTCTAA	0.383		NA											9	116	---	---	---	---	NA	NA	NA	NA
SLITRK6	84189	broad.mit.edu	37	13	86368721	86368722	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr13:86368721_86368722insT	uc001vll.1	-	2	2381_2382	c.1922_1923insA	c.(1921-1923)AAGfs	p.K641fs	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	641	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CTACTTGTTTCTTTTTGTATCT	0.411		NA											16	216	---	---	---	---	NA	NA	NA	NA
FANCM	57697	broad.mit.edu	37	14	45645955	45645955	+	Frame_Shift_Del	DEL	A	A	-	rs143681767		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:45645955delA	uc001wwd.3	+	14	4097	c.3998delA	c.(3997-3999)CAAfs	p.Q1333fs	FANCM_uc010anf.2_Frame_Shift_Del_p.Q1307fs|FANCM_uc001wwe.3_Frame_Shift_Del_p.Q869fs|FANCM_uc010ang.2_Frame_Shift_Del_p.Q547fs	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1333					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TTACCAGTGCAAAAAAAAGTT	0.328		NA						Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				13	109	---	---	---	---	NA	NA	NA	NA
MAP4K5	11183	broad.mit.edu	37	14	50930795	50930796	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:50930795_50930796insT	uc001wya.2	-	12	1113_1114	c.793_794insA	c.(793-795)AGAfs	p.R265fs	MAP4K5_uc001wyb.2_Frame_Shift_Ins_p.R265fs|MAP4K5_uc010anv.1_Frame_Shift_Ins_p.R265fs	NM_006575	NP_006566	Q9Y4K4	M4K5_HUMAN	mitogen-activated protein kinase kinase kinase	265	Protein kinase.				activation of JUN kinase activity	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity	p.R265fs*8(1)		large_intestine(1)	1	all_epithelial(31;0.000415)|Breast(41;0.0102)					AGCAGTTGGTCTTTTTTTTGGG	0.307		NA											3	5	---	---	---	---	NA	NA	NA	NA
NID2	22795	broad.mit.edu	37	14	52481919	52481919	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:52481919delG	uc001wzo.2	-	15	3337	c.3103delC	c.(3103-3105)CGGfs	p.R1035fs	NID2_uc010tqs.1_Frame_Shift_Del_p.R987fs|NID2_uc010tqt.1_Frame_Shift_Del_p.R1035fs|NID2_uc001wzp.2_Frame_Shift_Del_p.R1035fs	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	1035	Thyroglobulin type-1 2.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					TGGTCATCCCGGGGGGTGCCA	0.622		NA											8	162	---	---	---	---	NA	NA	NA	NA
EIF5	1983	broad.mit.edu	37	14	103805991	103805991	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr14:103805991delA	uc001ymq.2	+	10	1444	c.922delA	c.(922-924)AAAfs	p.K308fs	EIF5_uc001ymr.2_Frame_Shift_Del_p.K308fs|EIF5_uc001yms.2_Frame_Shift_Del_p.K308fs|EIF5_uc001ymt.2_Frame_Shift_Del_p.K308fs|EIF5_uc001ymu.2_Frame_Shift_Del_p.K308fs	NM_001969	NP_001960	P55010	IF5_HUMAN	eukaryotic translation initiation factor 5	308	W2.				regulation of translational initiation|RNA metabolic process	cytosol	GTP binding|GTPase activity|translation initiation factor activity			pancreas(1)|breast(1)|skin(1)	3		Melanoma(154;0.155)	Epithelial(46;0.182)			TCACAACAACAAAAAAGCCCA	0.388		NA											16	171	---	---	---	---	NA	NA	NA	NA
C15orf39	56905	broad.mit.edu	37	15	75499804	75499804	+	Frame_Shift_Del	DEL	C	C	-	rs145166482		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:75499804delC	uc002azp.3	+	2	1735	c.1415delC	c.(1414-1416)ACCfs	p.T472fs	C15orf39_uc002azq.3_Frame_Shift_Del_p.T472fs|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	472											0						GTTCCCTGTACCCCCCCAGCA	0.632		NA											12	129	---	---	---	---	NA	NA	NA	NA
TM6SF1	53346	broad.mit.edu	37	15	83805312	83805312	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr15:83805312delT	uc002bjp.2	+	10	1110	c.1001delT	c.(1000-1002)CTTfs	p.L334fs	TM6SF1_uc010bmq.2_Frame_Shift_Del_p.L303fs|TM6SF1_uc002bjq.2_3'UTR|TM6SF1_uc010bmr.2_RNA|TM6SF1_uc002bjr.2_Frame_Shift_Del_p.L186fs	NM_023003	NP_075379	Q9BZW5	TM6S1_HUMAN	transmembrane 6 superfamily member 1 isoform 1	334	Helical; (Potential).					integral to membrane				ovary(1)	1						GCAAAAATCCTTTTTTTAGCA	0.368		NA											13	231	---	---	---	---	NA	NA	NA	NA
PPL	5493	broad.mit.edu	37	16	4944500	4944500	+	Frame_Shift_Del	DEL	G	G	-	rs147027769		TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:4944500delG	uc002cyd.1	-	12	1452	c.1362delC	c.(1360-1362)CCCfs	p.P454fs		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	454	Spectrin 2.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CAGGGTCTGTGGGGGGGATCA	0.612		NA											7	131	---	---	---	---	NA	NA	NA	NA
PARN	5073	broad.mit.edu	37	16	14540819	14540819	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:14540819delC	uc010uzd.1	-	23	1932	c.1790delG	c.(1789-1791)TGTfs	p.C597fs	PARN_uc010uzc.1_Frame_Shift_Del_p.C536fs|PARN_uc010uze.1_Frame_Shift_Del_p.C551fs|PARN_uc010uzf.1_Frame_Shift_Del_p.C422fs	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	597					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						GGGCTCTGCACAGGAATCGGT	0.488		NA											12	170	---	---	---	---	NA	NA	NA	NA
IRX5	10265	broad.mit.edu	37	16	54966679	54966680	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:54966679_54966680delAG	uc002ehv.2	+	2	519_520	c.519_520delAG	c.(517-522)AAAGAGfs	p.K173fs	IRX5_uc010cca.1_Frame_Shift_Del_p.K225fs|IRX5_uc002ehw.2_Frame_Shift_Del_p.K107fs	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	173_174	Homeobox; TALE-type.				response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						GCCTCAAGAAAGAGAATAAAAT	0.599		NA											13	196	---	---	---	---	NA	NA	NA	NA
BCAR1	9564	broad.mit.edu	37	16	75268875	75268875	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr16:75268875delG	uc002fdv.2	-	5	2045	c.1922delC	c.(1921-1923)CCTfs	p.P641fs	BCAR1_uc002fdt.2_Frame_Shift_Del_p.P94fs|BCAR1_uc002fdu.2_Frame_Shift_Del_p.P431fs|BCAR1_uc010cgu.2_Frame_Shift_Del_p.P630fs|BCAR1_uc010vna.1_Frame_Shift_Del_p.P639fs|BCAR1_uc010vnb.1_Frame_Shift_Del_p.P687fs|BCAR1_uc002fdw.2_Frame_Shift_Del_p.P641fs|BCAR1_uc010vnc.1_Frame_Shift_Del_p.P493fs|BCAR1_uc010vnd.1_Frame_Shift_Del_p.P659fs|BCAR1_uc002fdx.2_Frame_Shift_Del_p.P659fs	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	641	SH3-binding (Potential).				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		GGTGAACTTAGGGGGTGAGGG	0.657		NA											10	153	---	---	---	---	NA	NA	NA	NA
SSH2	85464	broad.mit.edu	37	17	27963208	27963208	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:27963208delA	uc002heo.1	-	14	1959	c.1959delT	c.(1957-1959)TTTfs	p.F653fs	SSH2_uc010wbh.1_Frame_Shift_Del_p.F680fs	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	653					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						CTAGGGCACTAAAAAAGTCAA	0.502		NA											22	201	---	---	---	---	NA	NA	NA	NA
WNK4	65266	broad.mit.edu	37	17	40939870	40939870	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:40939870delG	uc002ibj.2	+	8	1837	c.1816delG	c.(1816-1818)GGGfs	p.G606fs	WNK4_uc010wgx.1_Frame_Shift_Del_p.G270fs|WNK4_uc002ibk.1_Frame_Shift_Del_p.G378fs|WNK4_uc010wgy.1_Intron	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	606					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		TCAGCCCCCTGGGGGGGTGCC	0.637		NA											11	136	---	---	---	---	NA	NA	NA	NA
XYLT2	64132	broad.mit.edu	37	17	48433967	48433967	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:48433967delC	uc002iqo.2	+	8	1687	c.1578delC	c.(1576-1578)TACfs	p.Y526fs	XYLT2_uc010dbo.2_RNA	NM_022167	NP_071450	Q9H1B5	XYLT2_HUMAN	xylosyltransferase II	526	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			pancreas(1)	1	Breast(11;7.18e-19)					ATGGCAGCTACCCCCCCGGCA	0.602		NA											7	145	---	---	---	---	NA	NA	NA	NA
ABCA6	23460	broad.mit.edu	37	17	67079125	67079125	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:67079125delT	uc002jhw.1	-	36	4680	c.4505delA	c.(4504-4506)AACfs	p.N1502fs		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1502	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					GCCAAGTTTGTTTTTCAGGTG	0.373		NA											22	447	---	---	---	---	NA	NA	NA	NA
ZNF750	79755	broad.mit.edu	37	17	80790043	80790044	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr17:80790043_80790044delAG	uc002kga.2	-	2	598_599	c.287_288delCT	c.(286-288)TCTfs	p.S96fs	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	96						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AGTCGAAGGCAGAGAGTCCATT	0.574		NA											10	148	---	---	---	---	NA	NA	NA	NA
OSBPL1A	114876	broad.mit.edu	37	18	21745097	21745097	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr18:21745097delT	uc002kve.2	-	27	2856	c.2682delA	c.(2680-2682)AAAfs	p.K894fs	OSBPL1A_uc002kvd.2_Frame_Shift_Del_p.K381fs|OSBPL1A_uc010xbc.1_Frame_Shift_Del_p.K512fs	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	894	Potential.				cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					CCTCAAGTCGTTTTTTTTCTT	0.458		NA											13	347	---	---	---	---	NA	NA	NA	NA
MIER2	54531	broad.mit.edu	37	19	308884	308886	+	In_Frame_Del	DEL	GTA	GTA	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:308884_308886delGTA	uc002lok.1	-	11	1033_1035	c.1024_1026delTAC	c.(1024-1026)TACdel	p.Y342del		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	342	SANT.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTTCCACAGGTAGTAGTACTCG	0.67		NA											11	168	---	---	---	---	NA	NA	NA	NA
TMPRSS9	360200	broad.mit.edu	37	19	2422029	2422030	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:2422029_2422030insT	uc010xgx.1	+	13	2230_2231	c.2230_2231insT	c.(2230-2232)CCCfs	p.P744fs		NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	744	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCCATGTCTCCCCCCTCGACC	0.663		NA											10	162	---	---	---	---	NA	NA	NA	NA
GIPC3	126326	broad.mit.edu	37	19	3586543	3586543	+	Frame_Shift_Del	DEL	G	G	-	rs8113232	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:3586543delG	uc002lyd.3	+	2	303	c.276delG	c.(274-276)CTGfs	p.L92fs		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	92										breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAAGCTCCTGGGGGGTCAGA	0.577		NA									OREG0025154	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	174	---	---	---	---	NA	NA	NA	NA
DEDD2	162989	broad.mit.edu	37	19	42713983	42713983	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:42713983delG	uc002osu.1	-	4	526	c.458delC	c.(457-459)CCAfs	p.P153fs	DEDD2_uc002osv.1_RNA|DEDD2_uc002osw.1_Frame_Shift_Del_p.P148fs|DEDD2_uc002osx.1_Frame_Shift_Del_p.Q37fs|DEDD2_uc002osy.1_Frame_Shift_Del_p.P153fs|DEDD2_uc010eid.2_RNA	NM_133328	NP_579874	Q8WXF8	DEDD2_HUMAN	death effector domain-containing  DNA binding	153					activation of pro-apoptotic gene products|apoptotic nuclear change|cellular homeostasis|induction of apoptosis via death domain receptors|intracellular signal transduction|negative regulation of transcription, DNA-dependent|RNA processing|rRNA catabolic process|transcription, DNA-dependent	nucleolus	DNA binding|receptor signaling complex scaffold activity				0		Prostate(69;0.0704)				CCGCTTGGTTGGGGGGGAGCC	0.662		NA											15	67	---	---	---	---	NA	NA	NA	NA
BCAM	4059	broad.mit.edu	37	19	45322440	45322440	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:45322440delG	uc002ozu.2	+	11	1508	c.1464delG	c.(1462-1464)TTGfs	p.L488fs	BCAM_uc002ozt.1_Frame_Shift_Del_p.L488fs	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	488	Extracellular (Potential).|Ig-like C2-type 3.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GGAGCCAATTGGGGGGCAGCG	0.597		NA											9	177	---	---	---	---	NA	NA	NA	NA
GRLF1	2909	broad.mit.edu	37	19	47424760	47424760	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:47424760delA	uc010ekv.2	+	1	2828	c.2828delA	c.(2827-2829)GAAfs	p.E943fs		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	943					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		GATGTGGTGGAAAAAAAGAAC	0.473		NA											12	169	---	---	---	---	NA	NA	NA	NA
EHD2	30846	broad.mit.edu	37	19	48244287	48244287	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:48244287delG	uc002phj.3	+	6	1480	c.1230delG	c.(1228-1230)CAGfs	p.Q410fs	EHD2_uc010xyu.1_Frame_Shift_Del_p.Q274fs|EHD2_uc010xyv.1_Frame_Shift_Del_p.Q93fs	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	410					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		TGGGCGTGCAGGGGGGCGCTT	0.677		NA											9	95	---	---	---	---	NA	NA	NA	NA
CLEC11A	6320	broad.mit.edu	37	19	51228371	51228372	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:51228371_51228372insG	uc002psy.2	+	4	797_798	c.619_620insG	c.(619-621)CGGfs	p.R207fs		NM_002975	NP_002966	Q9Y240	CLC11_HUMAN	stem cell growth factor precursor	207	C-type lectin.				positive regulation of cell proliferation	cytoplasm|extracellular region	growth factor activity|sugar binding			ovary(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		GTGCACGGCGCGGGGCGGGAGC	0.738		NA											2	4	---	---	---	---	NA	NA	NA	NA
CNOT3	4849	broad.mit.edu	37	19	54649671	54649671	+	Frame_Shift_Del	DEL	T	T	-	rs36665	byFrequency	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr19:54649671delT	uc002qdj.1	+	9	1040	c.729delT	c.(727-729)CCCfs	p.P243fs	CNOT3_uc010yel.1_Frame_Shift_Del_p.P243fs|CNOT3_uc002qdi.2_Frame_Shift_Del_p.P156fs|CNOT3_uc002qdk.1_Frame_Shift_Del_p.P243fs|CNOT3_uc010ere.1_RNA	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	243					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCACCTCCCCTCCCAGCCACA	0.632		NA											9	100	---	---	---	---	NA	NA	NA	NA
SOS1	6654	broad.mit.edu	37	2	39222520	39222520	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:39222520delT	uc002rrk.3	-	20	3131	c.3090delA	c.(3088-3090)AAAfs	p.K1030fs	SOS1_uc002rrj.3_Frame_Shift_Del_p.K644fs	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	1030					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				GATAGCTATATTTTTTTGGCT	0.388		NA							Noonan_syndrome				7	186	---	---	---	---	NA	NA	NA	NA
MSH2	4436	broad.mit.edu	37	2	47639588	47639588	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:47639588delA	uc002rvy.1	+	4	749	c.681delA	c.(679-681)AGAfs	p.R227fs	MSH2_uc010yoh.1_Frame_Shift_Del_p.R161fs|MSH2_uc002rvz.2_Frame_Shift_Del_p.R227fs|MSH2_uc010fbg.2_Frame_Shift_Del_p.R87fs|MSH2_uc010fbf.1_Frame_Shift_Del_p.R134fs	NM_000251	NP_000242	P43246	MSH2_HUMAN	mutS homolog 2	227					B cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|double-strand break repair|intra-S DNA damage checkpoint|isotype switching|maintenance of DNA repeat elements|male gonad development|meiotic gene conversion|meiotic mismatch repair|negative regulation of neuron apoptosis|negative regulation of reciprocal meiotic recombination|positive regulation of helicase activity|postreplication repair|response to UV-B|response to X-ray|somatic hypermutation of immunoglobulin genes	MutSalpha complex|MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|guanine/thymine mispair binding|loop DNA binding|protein C-terminus binding|protein homodimerization activity|protein kinase binding|Y-form DNA binding			large_intestine(33)|haematopoietic_and_lymphoid_tissue(6)|endometrium(4)|ovary(3)|cervix(2)|central_nervous_system(2)|stomach(1)|small_intestine(1)|breast(1)|skin(1)|prostate(1)	55		all_hematologic(82;0.0359)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TCACAGAAAGAAAAAAAGCTG	0.328		NA	D|Mis|N|F|S		colorectal|endometrial|ovarian	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				12	76	---	---	---	---	NA	NA	NA	NA
PNPT1	87178	broad.mit.edu	37	2	55894167	55894167	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:55894167delT	uc002rzf.2	-	13	1188	c.1135delA	c.(1135-1137)ACCfs	p.T379fs	PNPT1_uc002rzg.2_RNA	NM_033109	NP_149100	Q8TCS8	PNPT1_HUMAN	polyribonucleotide nucleotidyltransferase 1	379					mRNA catabolic process|RNA processing	plasma membrane	3'-5'-exoribonuclease activity|polyribonucleotide nucleotidyltransferase activity|RNA binding				0			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			CCATGAAGGGTTTTAAACATA	0.313		NA											7	106	---	---	---	---	NA	NA	NA	NA
MKI67IP	84365	broad.mit.edu	37	2	122485323	122485323	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:122485323delT	uc002tnk.2	-	7	936	c.859delA	c.(859-861)AGAfs	p.R287fs	uc002tnj.1_Intron	NM_032390	NP_115766	Q9BYG3	MK67I_HUMAN	MKI67 interacting nucleolar phosphoprotein	287					protein complex assembly|rRNA metabolic process|rRNA transcription	condensed nuclear chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						CTTCTTCGTCTTTTTTTCCGT	0.294		NA											20	275	---	---	---	---	NA	NA	NA	NA
ACVR2A	92	broad.mit.edu	37	2	148657041	148657041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:148657041delA	uc002twg.2	+	4	547	c.278delA	c.(277-279)GAAfs	p.E93fs	ACVR2A_uc010zbn.1_5'UTR|ACVR2A_uc002twh.2_Frame_Shift_Del_p.E93fs	NM_001616	NP_001607	P27037	AVR2A_HUMAN	activin A receptor, type IIA precursor	93	Extracellular (Potential).				activin receptor signaling pathway|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of erythrocyte differentiation|positive regulation of osteoblast differentiation|positive regulation of protein phosphorylation	cytoplasm|inhibin-betaglycan-ActRII complex|integral to plasma membrane	ATP binding|coreceptor activity|inhibin beta-A binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			stomach(8)|large_intestine(2)|lung(1)|breast(1)|kidney(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.0969)		GATTGTGTAGAAAAAAAAGAC	0.299		NA											23	190	---	---	---	---	NA	NA	NA	NA
KCNH7	90134	broad.mit.edu	37	2	163374657	163374658	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:163374657_163374658insA	uc002uch.1	-	4	686_687	c.474_475insT	c.(472-477)TTTGGGfs	p.F158fs	KCNH7_uc002uci.2_Frame_Shift_Ins_p.F158fs	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	158_159	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AATTTGAACCCAAAAAATTTCC	0.381		NA											9	110	---	---	---	---	NA	NA	NA	NA
HOXD8	3234	broad.mit.edu	37	2	176995417	176995417	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:176995417delC	uc002uko.2	+	1	941	c.323delC	c.(322-324)GCCfs	p.A108fs	uc002ukl.1_5'Flank|uc002ukm.1_5'Flank|HOXD8_uc002ukn.2_Intron|HOXD8_uc002ukp.2_Frame_Shift_Del_p.A108fs	NM_019558	NP_062458	P13378	HXD8_HUMAN	homeobox D8	108					anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		TACCAGGCCGccccccctcct	0.557		NA											18	86	---	---	---	---	NA	NA	NA	NA
TRIP12	9320	broad.mit.edu	37	2	230724116	230724116	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr2:230724116delT	uc002vpw.1	-	3	382	c.273delA	c.(271-273)AAAfs	p.K91fs	TRIP12_uc002vpx.1_Frame_Shift_Del_p.K133fs|TRIP12_uc002vpy.1_Intron|TRIP12_uc010zlz.1_RNA|TRIP12_uc010fxh.1_Frame_Shift_Del_p.K91fs	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	91					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		GTGCTTTTGGTTTTTTTGCAG	0.433		NA											10	358	---	---	---	---	NA	NA	NA	NA
SPAG4	6676	broad.mit.edu	37	20	34208803	34208803	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr20:34208803delC	uc002xdb.1	+	12	1290	c.1173delC	c.(1171-1173)GACfs	p.D391fs	SPAG4_uc010zvi.1_Frame_Shift_Del_p.D314fs	NM_003116	NP_003107	Q9NPE6	SPAG4_HUMAN	sperm associated antigen 4	391	SUN.				spermatogenesis	cilium|flagellar axoneme|integral to membrane	structural molecule activity				0	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			CCCAGAATGACCCCCCAGCTG	0.577		NA											10	140	---	---	---	---	NA	NA	NA	NA
CDC45	8318	broad.mit.edu	37	22	19495334	19495336	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr22:19495334_19495336delCTC	uc002zpr.2	+	12	1078_1080	c.1002_1004delCTC	c.(1000-1005)ATCTCC>ATC	p.S335del	CDC45_uc011agz.1_In_Frame_Del_p.S330del|CDC45_uc011aha.1_In_Frame_Del_p.S367del|CDC45_uc002zps.2_In_Frame_Del_p.S335del|CDC45_uc002zpt.2_In_Frame_Del_p.S289del	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	335					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						CCATGGACATCTCCTTGAAGGAG	0.453		NA											11	108	---	---	---	---	NA	NA	NA	NA
TTLL3	26140	broad.mit.edu	37	3	9862377	9862377	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:9862377delC	uc003btg.2	+	7	893	c.677delC	c.(676-678)ACCfs	p.T226fs	ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_Frame_Shift_Del_p.T193fs|TTLL3_uc003btf.3_Frame_Shift_Del_p.T14fs|TTLL3_uc010hco.1_Frame_Shift_Del_p.T162fs|TTLL3_uc003bth.3_Frame_Shift_Del_p.T14fs|TTLL3_uc011atj.1_Frame_Shift_Del_p.T162fs|TTLL3_uc003btj.3_Frame_Shift_Del_p.T14fs|TTLL3_uc003bti.3_Frame_Shift_Del_p.T14fs	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	226	TTL.				axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					CTGTACCTCACCCCCGAGGGC	0.602		NA											8	143	---	---	---	---	NA	NA	NA	NA
P4HTM	54681	broad.mit.edu	37	3	49042369	49042369	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:49042369delG	uc003cvg.2	+	6	1312	c.963delG	c.(961-963)GAGfs	p.E321fs	P4HTM_uc003cvh.2_Frame_Shift_Del_p.E321fs|WDR6_uc011bbx.1_5'Flank|WDR6_uc003cvj.2_5'Flank|WDR6_uc011bby.1_5'Flank|WDR6_uc010hkn.2_5'Flank|WDR6_uc011bbz.1_5'Flank	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	321	Lumenal (Potential).|Fe2OG dioxygenase.					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	GATATGGTGAGGGGGGCCACT	0.617		NA											17	157	---	---	---	---	NA	NA	NA	NA
PRKCD	5580	broad.mit.edu	37	3	53220653	53220653	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:53220653delG	uc003dgl.2	+	14	1647	c.1294delG	c.(1294-1296)GGGfs	p.G432fs	PRKCD_uc003dgm.2_Frame_Shift_Del_p.G432fs	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	432	Protein kinase.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		GTTCCTCAACGGGGGGGACCT	0.602		NA											11	659	---	---	---	---	NA	NA	NA	NA
B3GNT5	84002	broad.mit.edu	37	3	182987617	182987617	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:182987617delA	uc003flk.2	+	2	561	c.31delA	c.(31-33)AAAfs	p.K11fs	MCF2L2_uc003fli.1_Intron|MCF2L2_uc003flj.1_Intron|MCF2L2_uc011bqr.1_Intron|B3GNT5_uc003fll.2_Frame_Shift_Del_p.K11fs|B3GNT5_uc003flm.2_Frame_Shift_Del_p.K11fs	NM_032047	NP_114436	Q9BYG0	B3GN5_HUMAN	UDP-GlcNAc:betaGal	11	Cytoplasmic (Potential).				central nervous system development|glycolipid biosynthetic process|protein glycosylation	Golgi membrane|integral to membrane	beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity|galactosyltransferase activity			ovary(1)	1	all_cancers(143;8.52e-13)|Ovarian(172;0.0355)		all cancers(12;4.52e-44)|Epithelial(37;8.82e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			CAGAAGAGTCAAAAAATGGCA	0.373		NA											11	235	---	---	---	---	NA	NA	NA	NA
C3orf59	151963	broad.mit.edu	37	3	192517004	192517004	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr3:192517004delT	uc011bsp.1	-	2	968	c.647delA	c.(646-648)AATfs	p.N216fs		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	216											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		GATGGTCCCATTTTTTTCCAC	0.463		NA											9	136	---	---	---	---	NA	NA	NA	NA
ZNF721	170960	broad.mit.edu	37	4	436405	436406	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:436405_436406delCT	uc003gag.2	-	3	2541_2542	c.1850_1851delAG	c.(1849-1851)GAGfs	p.E617fs	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Frame_Shift_Del_p.E649fs|ZNF721_uc010ibe.2_Frame_Shift_Del_p.E605fs	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	617						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						CTTTGCCACACTCTTCACATTT	0.411		NA											48	592	---	---	---	---	NA	NA	NA	NA
HNRPDL	9987	broad.mit.edu	37	4	83350506	83350506	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:83350506delG	uc003hmr.2	-	1	873	c.338delC	c.(337-339)CCTfs	p.P113fs	ENOPH1_uc003hmv.2_5'Flank|ENOPH1_uc003hmw.2_5'Flank|ENOPH1_uc003hmx.2_5'Flank|HNRPDL_uc003hmq.2_RNA|HNRPDL_uc003hms.2_RNA|HNRPDL_uc003hmt.2_Frame_Shift_Del_p.P113fs	NM_031372	NP_112740	O14979	HNRDL_HUMAN	heterogeneous nuclear ribonucleoprotein D-like	113					regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|heterogeneous nuclear ribonucleoprotein complex	double-stranded DNA binding|nucleotide binding|poly(A) RNA binding|protein binding|single-stranded DNA binding			skin(1)	1		Hepatocellular(203;0.114)				GCTGTCGGCAGGGGGGTGCTG	0.597		NA											7	131	---	---	---	---	NA	NA	NA	NA
LARP1B	55132	broad.mit.edu	37	4	129121769	129121769	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:129121769delT	uc003iga.2	+	17	2389	c.2258delT	c.(2257-2259)ATGfs	p.M753fs	LARP1B_uc003igc.2_Frame_Shift_Del_p.M172fs|LARP1B_uc010ioa.1_RNA|LARP1B_uc003ige.2_RNA|LARP1B_uc003igd.2_RNA|LARP1B_uc003igf.2_5'UTR	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	753							RNA binding				0						AATAAAAAAATGTATGAGGAA	0.343		NA											9	76	---	---	---	---	NA	NA	NA	NA
DCHS2	54798	broad.mit.edu	37	4	155157144	155157144	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:155157144delA	uc003inw.2	-	25	7295	c.7295delT	c.(7294-7296)TTCfs	p.F2432fs		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2432	Cadherin 22.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TGGGAGGGTGAAAAAATACTG	0.438		NA											10	158	---	---	---	---	NA	NA	NA	NA
FAT1	2195	broad.mit.edu	37	4	187517815	187517815	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr4:187517815delG	uc003izf.2	-	25	13067	c.12879delC	c.(12877-12879)CACfs	p.H4293fs	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_Frame_Shift_Del_p.H184fs	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4293	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TTCGGTGCCCGTGCACAGACT	0.552		NA								HNSCC(5;0.00058)			7	50	---	---	---	---	NA	NA	NA	NA
MTRR	4552	broad.mit.edu	37	5	7875406	7875406	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:7875406delG	uc003jed.2	+	4	430	c.400delG	c.(400-402)GGGfs	p.G134fs	MTRR_uc010itn.1_RNA|MTRR_uc003jee.3_Frame_Shift_Del_p.G107fs|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_RNA|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	134	FMN (By similarity).|Flavodoxin-like.				methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	CTTTTGCAATGGGGGGAAGAT	0.408		NA											14	364	---	---	---	---	NA	NA	NA	NA
FAT2	2196	broad.mit.edu	37	5	150924483	150924484	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr5:150924483_150924484insG	uc003lue.3	-	9	6217_6218	c.6204_6205insC	c.(6202-6207)CCCAAAfs	p.P2068fs	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2068_2069	Extracellular (Potential).|Cadherin 17.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCTTAAATTTGGGGGGATTGT	0.505		NA											16	188	---	---	---	---	NA	NA	NA	NA
HLA-C	3107	broad.mit.edu	37	6	31238162	31238162	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:31238162delG	uc003nsy.2	-	4	727	c.720delC	c.(718-720)ACCfs	p.T240fs	HLA-C_uc011dnj.1_Frame_Shift_Del_p.T212fs|HLA-C_uc003nsx.2_Frame_Shift_Del_p.T119fs|HLA-C_uc003nsz.2_Frame_Shift_Del_p.T240fs|HLA-C_uc010jsl.2_Frame_Shift_Del_p.T240fs|HLA-C_uc003nta.2_Frame_Shift_Del_p.T240fs|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_Frame_Shift_Del_p.T119fs	NM_002117	NP_002108	Q9TNN7	1C05_HUMAN	major histocompatibility complex, class I, C	240	Extracellular (Potential).|Alpha-3.|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex					0						CCCGCTGCCAGGTCAGTGTGA	0.637		NA											18	137	---	---	---	---	NA	NA	NA	NA
ZBTB22	9278	broad.mit.edu	37	6	33283004	33283005	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:33283004_33283005delCA	uc003oeb.2	-	2	1841_1842	c.1689_1690delTG	c.(1687-1692)TGTGAGfs	p.C563fs	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Frame_Shift_Del_p.C563fs	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	563_564					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGCCGGCGCTCACAGTGTCCTC	0.663		NA											11	83	---	---	---	---	NA	NA	NA	NA
ANKS1A	23294	broad.mit.edu	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:34951143delC	uc003ojx.3	+	7	1095	c.953delC	c.(952-954)ACCfs	p.T318fs	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	318						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						GTAGATAAAACCCCCCCACCC	0.418		NA											21	245	---	---	---	---	NA	NA	NA	NA
SLC35F1	222553	broad.mit.edu	37	6	118596759	118596759	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:118596759delT	uc003pxx.3	+	5	976	c.775delT	c.(775-777)TTTfs	p.F259fs	SLC35F1_uc003pxy.1_Frame_Shift_Del_p.F64fs	NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	259	Helical; (Potential).				transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		CTTTGGAGCATTTTTCAGTGG	0.378		NA											12	118	---	---	---	---	NA	NA	NA	NA
TCP10	6953	broad.mit.edu	37	6	167791449	167791450	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr6:167791449_167791450insG	uc003qvv.1	-	4	622_623	c.410_411insC	c.(409-411)CCTfs	p.P137fs	TCP10_uc003qvu.2_Frame_Shift_Ins_p.P137fs|TCP10_uc003qvw.2_Frame_Shift_Ins_p.P113fs	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	164						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		TCACCTTTGGAGGAGCTAAGTG	0.515		NA											13	420	---	---	---	---	NA	NA	NA	NA
PKD1L1	168507	broad.mit.edu	37	7	47925401	47925401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:47925401delC	uc003tny.1	-	18	3088	c.3088delG	c.(3088-3090)GAGfs	p.E1030fs		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1030	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TCTGGAGCCTCCCCCAGGACT	0.622		NA											7	191	---	---	---	---	NA	NA	NA	NA
ABCA13	154664	broad.mit.edu	37	7	48311506	48311506	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:48311506delT	uc003toq.2	+	17	2268	c.2243delT	c.(2242-2244)CTTfs	p.L748fs	ABCA13_uc010kyr.2_Frame_Shift_Del_p.L251fs	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	748					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTGCCTAATCTTTTTGACTCC	0.348		NA											12	67	---	---	---	---	NA	NA	NA	NA
CYP51A1	1595	broad.mit.edu	37	7	91752493	91752494	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr7:91752493_91752494insT	uc003ulm.3	-	7	1188_1189	c.1026_1027insA	c.(1024-1029)AAATGTfs	p.K342fs	CYP51A1_uc011khn.1_Frame_Shift_Ins_p.K237fs|CYP51A1_uc003uln.3_Frame_Shift_Ins_p.K279fs	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	336_337					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	TCTAAATAACATTTTTTTTGAA	0.396		NA											22	275	---	---	---	---	NA	NA	NA	NA
RP1L1	94137	broad.mit.edu	37	8	10470757	10470757	+	Frame_Shift_Del	DEL	G	G	-	rs74594406	by1000genomes	TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:10470757delG	uc003wtc.2	-	4	1080	c.851delC	c.(850-852)CCGfs	p.P284fs		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	284					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGGGCCCACCGGGGGGTTGCT	0.662		NA											15	201	---	---	---	---	NA	NA	NA	NA
MYST3	7994	broad.mit.edu	37	8	41798569	41798569	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:41798569delC	uc010lxb.2	-	16	3374	c.2830delG	c.(2830-2832)GTTfs	p.V944fs	MYST3_uc010lxc.2_Frame_Shift_Del_p.V944fs|MYST3_uc003xon.3_Frame_Shift_Del_p.V944fs	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	944					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			CAGGGCTCAACCCCCTCACTG	0.552		NA											17	326	---	---	---	---	NA	NA	NA	NA
TMEM68	137695	broad.mit.edu	37	8	56668944	56668944	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:56668944delT	uc003xsg.1	-	2	421	c.352delA	c.(352-354)ATAfs	p.I118fs	TMEM68_uc003xsh.1_Frame_Shift_Del_p.I118fs	NM_152417	NP_689630	Q96MH6	TMM68_HUMAN	transmembrane protein 68	118						integral to membrane	acyltransferase activity			skin(1)	1			Epithelial(17;0.000361)|all cancers(17;0.00326)			TCTTCTGGTATTTTTTCCATT	0.299		NA											9	155	---	---	---	---	NA	NA	NA	NA
LRRC67	286187	broad.mit.edu	37	8	67926714	67926715	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:67926714_67926715insT	uc003xxc.2	-	3	387_388	c.242_243insA	c.(241-243)AACfs	p.N81fs		NM_001013626	NP_001013648	Q7Z4L9	LRC67_HUMAN	leucine rich repeat containing 67	81	LRR 3.										0						AAATACAATTGTTTTGTAGGTA	0.272		NA											11	231	---	---	---	---	NA	NA	NA	NA
SLC26A7	115111	broad.mit.edu	37	8	92352747	92352747	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chr8:92352747delA	uc003yex.2	+	9	1272	c.994delA	c.(994-996)AAAfs	p.K332fs	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Frame_Shift_Del_p.K332fs|SLC26A7_uc003yfa.2_Frame_Shift_Del_p.K332fs	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	332	Extracellular (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			AGGATCTGCCAAAAAATTCAA	0.502		NA											10	166	---	---	---	---	NA	NA	NA	NA
ASMTL	8623	broad.mit.edu	37	X	1546793	1546793	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:1546793delC	uc004cpx.1	-	7	842	c.731delG	c.(730-732)GGCfs	p.G244fs	ASMTL_uc011mhe.1_Frame_Shift_Del_p.G168fs|ASMTL_uc004cpy.1_Frame_Shift_Del_p.G228fs|ASMTL_uc011mhf.1_Frame_Shift_Del_p.G186fs	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	244					melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTCCGAGCCGCCCCCCTCCAC	0.697		NA											12	124	---	---	---	---	NA	NA	NA	NA
DMD	1756	broad.mit.edu	37	X	32862971	32862972	+	In_Frame_Ins	INS	-	-	TTT			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:32862971_32862972insTTT	uc004dda.1	-	4	436_437	c.192_193insAAA	c.(190-195)insAAA	p.64_65insK	DMD_uc004dcz.2_5'UTR|DMD_uc004dcy.1_In_Frame_Ins_p.60_61insK|DMD_uc004ddb.1_In_Frame_Ins_p.56_57insK|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_In_Frame_Ins_p.56_57insK|DMD_uc010ngq.1_RNA|DMD_uc010ngr.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	64_65	CH 1.|Actin-binding.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GATCCTTTTTCTTTTGGCTGAG	0.396		NA											8	112	---	---	---	---	NA	NA	NA	NA
FOXR2	139628	broad.mit.edu	37	X	55650821	55650822	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:55650821_55650822insC	uc004duo.2	+	1	989_990	c.677_678insC	c.(676-678)TTCfs	p.F226fs		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	226	Fork-head.				embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						CGACAGCATTTCCCCTTTTTCT	0.51		NA											13	195	---	---	---	---	NA	NA	NA	NA
PCDH11X	27328	broad.mit.edu	37	X	91134260	91134261	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:91134260_91134261delAC	uc004efk.1	+	2	3866_3867	c.3021_3022delAC	c.(3019-3024)GTACACfs	p.V1007fs	PCDH11X_uc004efl.1_Frame_Shift_Del_p.V1007fs|PCDH11X_uc004efo.1_Frame_Shift_Del_p.V1007fs|PCDH11X_uc010nmv.1_Frame_Shift_Del_p.V1007fs|PCDH11X_uc004efm.1_Frame_Shift_Del_p.V1007fs|PCDH11X_uc004efn.1_Frame_Shift_Del_p.V1007fs|PCDH11X_uc004efh.1_Frame_Shift_Del_p.V1007fs|PCDH11X_uc004efj.1_Frame_Shift_Del_p.V1007fs	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1007_1008	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CTGTGTCCGTACACACCAGACC	0.406		NA											25	320	---	---	---	---	NA	NA	NA	NA
RNF128	79589	broad.mit.edu	37	X	106016281	106016281	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:106016281delT	uc004eml.2	+	2	873	c.623delT	c.(622-624)ATTfs	p.I208fs	RNF128_uc004emk.2_Frame_Shift_Del_p.I182fs	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	208	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						CACTATTCAATTTTTTTCGTT	0.388		NA											23	256	---	---	---	---	NA	NA	NA	NA
TEX13B	56156	broad.mit.edu	37	X	107224932	107224933	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:107224932_107224933delCT	uc004enn.1	-	2	518_519	c.425_426delAG	c.(424-426)GAGfs	p.E142fs		NM_031273	NP_112563	Q9BXU2	TX13B_HUMAN	testis expressed 13B	142										ovary(1)	1						GCATGTCCCGCTCTCTCTGCAC	0.589		NA											7	175	---	---	---	---	NA	NA	NA	NA
ODZ1	10178	broad.mit.edu	37	X	124029940	124029941	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:124029940_124029941insT	uc004euj.2	-	2	431_432	c.367_368insA	c.(367-369)ATGfs	p.M123fs	ODZ1_uc011muj.1_Frame_Shift_Ins_p.M123fs|ODZ1_uc010nqy.2_Frame_Shift_Ins_p.M123fs	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	123	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CCTTATCCACATTCTTAGTGCA	0.495		NA											44	594	---	---	---	---	NA	NA	NA	NA
SRPK3	26576	broad.mit.edu	37	X	153049647	153049647	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-5369-01A-01D-1434-08	TCGA-CN-5369-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c8e6937-9fd7-41cc-ac74-d8b75235d4b3	ff349f37-b5ea-4475-bcd8-02d18f80c40e	g.chrX:153049647delG	uc004fil.2	+	10	1158	c.1126delG	c.(1126-1128)GGGfs	p.G376fs	SRPK3_uc004fik.2_Frame_Shift_Del_p.G442fs|SRPK3_uc010nul.2_Frame_Shift_Del_p.G300fs|SRPK3_uc004fin.2_Frame_Shift_Del_p.G375fs|SRPK3_uc004fim.2_Frame_Shift_Del_p.G342fs	NM_014370	NP_055185	Q9UPE1	SRPK3_HUMAN	serine arginine rich protein-specific kinase 3	376	Protein kinase.				cell differentiation|muscle organ development|muscle tissue development		ATP binding|protein serine/threonine kinase activity			pancreas(2)|lung(1)	3	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GCGAGAGACCGGGGGCCTCCT	0.642		NA											15	150	---	---	---	---	NA	NA	NA	NA
