Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
FBXO44	93611	broad.mit.edu	37	1	11718444	11718444	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:11718444C>T	uc001asm.2	+	3	512	c.386C>T	c.(385-387)TCA>TTA	p.S129L	FBXO44_uc001ask.2_Intron|FBXO44_uc010oaq.1_Missense_Mutation_p.S129L|FBXO44_uc001asl.2_Missense_Mutation_p.S129L|FBXO44_uc001asn.2_Intron|FBXO44_uc010oar.1_Intron|FBXO44_uc010oas.1_Intron	NM_033182	NP_149438	Q9H4M3	FBX44_HUMAN	F-box protein 44 isoform 1	129	FBA.				protein catabolic process	SCF ubiquitin ligase complex	protein binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.41e-06)|COAD - Colon adenocarcinoma(227;0.000255)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000758)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		TTCGTTACTTCATATTAGTAA	0.527		NA											15	135					0	0	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887625	12887625	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:12887625C>T	uc001auk.2	-	3	428	c.232G>A	c.(232-234)GAA>AAA	p.E78K		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	78											0						GCCATAGCTTCAGACCAAACC	0.473		NA											18	365					0	0	0	0
ECE1	1889	broad.mit.edu	37	1	21585219	21585219	+	Silent	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:21585219G>C	uc001bek.2	-	6	804	c.729C>G	c.(727-729)GCC>GCG	p.A243A	ECE1_uc001bem.2_Silent_p.A227A|ECE1_uc001bej.2_Silent_p.A231A|ECE1_uc001bei.2_Silent_p.A240A|ECE1_uc010odl.1_Silent_p.A243A|ECE1_uc009vqa.1_Silent_p.A243A	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	243	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TCTTGGAATCGGCACTGACAT	0.572		NA											8	115					0	0	0	0
TMEM200B	399474	broad.mit.edu	37	1	29447769	29447769	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:29447769G>C	uc001brn.1	-	2	632	c.572C>G	c.(571-573)CCG>CGG	p.P191R		NM_001003682	NP_001003682	Q69YZ2	T200B_HUMAN	transmembrane protein 200B	191	Pro-rich.					integral to membrane					0		Colorectal(325;3.46e-05)|Breast(348;0.00765)|Lung NSC(340;0.0153)|all_lung(284;0.0173)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;7.32e-08)|COAD - Colon adenocarcinoma(152;4.92e-06)|STAD - Stomach adenocarcinoma(196;0.00618)|BRCA - Breast invasive adenocarcinoma(304;0.0501)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.126)		ACGCGGGGACGGGTCCCAGAT	0.692		NA											14	15					0	0	0	0
SPATA6	54558	broad.mit.edu	37	1	48918776	48918776	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:48918776C>G	uc001crr.1	-	2	244	c.79G>C	c.(79-81)GAC>CAC	p.D27H	SPATA6_uc001crs.1_Missense_Mutation_p.D27H|SPATA6_uc010omv.1_Missense_Mutation_p.D27H|SPATA6_uc001crt.2_5'UTR	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor	27					cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						TCCTCTTTGTCTTTAAGCACG	0.388		NA											49	87					0	0	0	0
FUBP1	8880	broad.mit.edu	37	1	78428560	78428560	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:78428560C>G	uc001dii.2	-	14	1328	c.1239G>C	c.(1237-1239)CAG>CAC	p.Q413H	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Missense_Mutation_p.Q434H	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	413	KH 4.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						GAGGATTTCTCTGAAGTTCTA	0.383		NA											31	242					0	0	0	0
AGL	178	broad.mit.edu	37	1	100357191	100357191	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:100357191C>T	uc001dsi.1	+	23	3379	c.2979C>T	c.(2977-2979)TTC>TTT	p.F993F	AGL_uc001dsj.1_Silent_p.F993F|AGL_uc001dsk.1_Silent_p.F993F|AGL_uc001dsl.1_Silent_p.F993F|AGL_uc001dsm.1_Silent_p.F977F|AGL_uc001dsn.1_Silent_p.F976F	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	993	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		CTATGTTCTTCTACCTGAAGC	0.363		NA											32	205					0	0	0	0
THBS3	7059	broad.mit.edu	37	1	155174872	155174872	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:155174872C>T	uc001fix.2	-	3	545	c.522G>A	c.(520-522)CAG>CAA	p.Q174Q	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Silent_p.Q174Q|THBS3_uc001fiz.2_Silent_p.Q174Q|THBS3_uc001fiy.2_5'UTR|THBS3_uc010pfu.1_Intron|THBS3_uc010pfv.1_Intron|THBS3_uc001fja.2_RNA|THBS3_uc009wqj.1_Silent_p.Q136Q	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	174	TSP N-terminal.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			AATACGCCTTCTGTCCAGTCC	0.577		NA											21	43					0	0	0	0
FCRLA	84824	broad.mit.edu	37	1	161677126	161677126	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:161677126G>A	uc001gbe.2	+	1	365	c.123G>A	c.(121-123)ATG>ATA	p.M41I	FCRLA_uc001gbd.2_Missense_Mutation_p.M41I|FCRLA_uc001gbf.2_Missense_Mutation_p.M41I|FCRLA_uc001gbg.2_Missense_Mutation_p.M41I|FCRLA_uc009wuo.2_Missense_Mutation_p.M41I|FCRLA_uc009wup.2_Missense_Mutation_p.M41I|FCRLA_uc009wuq.2_Missense_Mutation_p.M41I	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	24					cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			TGGCCCAGATGCTACTGGGTA	0.502		NA											4	120					0	0	0	0
NCF2	4688	broad.mit.edu	37	1	183546795	183546795	+	Missense_Mutation	SNP	C	C	G	rs137854515		TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:183546795C>G	uc001gqj.3	-	3	580	c.305G>C	c.(304-306)CGA>CCA	p.R102P	NCF2_uc010pod.1_Missense_Mutation_p.R102P|NCF2_uc010poe.1_Missense_Mutation_p.R102P|NCF2_uc001gqk.3_Missense_Mutation_p.R102P	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	102	TPR 2.				cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						CTGGTTCCCTCGAAGCTGAAT	0.488		NA											24	181					0	0	0	0
CACNA1S	779	broad.mit.edu	37	1	201016272	201016272	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:201016272G>A	uc001gvv.2	-	38	4866	c.4639C>T	c.(4639-4641)CGG>TGG	p.R1547W		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1547	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TTCTTGGGCCGATAGCCATAA	0.517		NA											90	205					0	0	0	0
NAV1	89796	broad.mit.edu	37	1	201777960	201777960	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:201777960G>A	uc001gwu.2	+	19	4506	c.4159G>A	c.(4159-4161)GCA>ACA	p.A1387T	NAV1_uc001gwx.2_Missense_Mutation_p.A996T	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	1390					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						CCTAGGCCTGGCACTCACCCA	0.562		NA											6	304					0	0	0	0
KCNH1	3756	broad.mit.edu	37	1	211192356	211192356	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:211192356G>A	uc001hib.2	-	6	971	c.801C>T	c.(799-801)CTC>CTT	p.L267L	KCNH1_uc001hic.2_Silent_p.L267L	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	267	Helical; Name=Segment S2; (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TATGAAAATTGAGCACAATGT	0.453		NA											21	159					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237868594	237868594	+	Silent	SNP	A	A	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr1:237868594A>G	uc001hyl.1	+	67	9651	c.9531A>G	c.(9529-9531)AAA>AAG	p.K3177K	RYR2_uc010pxz.1_Silent_p.K132K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3177					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATCTGGACAAACATAATATTT	0.388		NA											16	17					0	0	0	0
GATA3	2625	broad.mit.edu	37	10	8115874	8115874	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:8115874C>G	uc001ika.2	+	6	1777	c.1220C>G	c.(1219-1221)TCG>TGG	p.S407W	GATA3_uc001ijz.2_Missense_Mutation_p.S408W	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	407					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						AGCCACATCTCGCCCTTCAGC	0.602		NA	F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						3	107					0	0	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24884722	24884722	+	Silent	SNP	T	T	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:24884722T>C	uc001isb.2	-	19	4123	c.3636A>G	c.(3634-3636)AAA>AAG	p.K1212K	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1211	Rho-GAP.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						AATCTCGCCATTTCTAGGTGT	0.353		NA											17	71					0	0	0	0
SLC18A3	6572	broad.mit.edu	37	10	50819671	50819671	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:50819671C>T	uc001jhw.2	+	1	1325	c.885C>T	c.(883-885)GCC>GCT	p.A295A	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	295	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						CCGTGGTGGCCGGCGCGCTCA	0.642		NA											17	108					0	0	0	0
SGMS1	259230	broad.mit.edu	37	10	52071137	52071137	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:52071137C>T	uc001jje.2	-	9	1734	c.780G>A	c.(778-780)ATG>ATA	p.M260I	SGMS1_uc010qhk.1_Missense_Mutation_p.M91I|SGMS1_uc009xot.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	266					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						CAATGAGCTTCATTATTCTTC	0.463		NA											10	73					0	0	0	0
VCL	7414	broad.mit.edu	37	10	75874638	75874638	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:75874638G>C	uc001jwd.2	+	21	3333	c.3239G>C	c.(3238-3240)AGT>ACT	p.S1080T	VCL_uc009xrr.2_Missense_Mutation_p.S761T|VCL_uc001jwe.2_Missense_Mutation_p.S1012T|VCL_uc010qkz.1_Missense_Mutation_p.S273T	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	1080	C-terminal tail.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					ACCAACATCAGTGATGAGGAG	0.483		NA											2	7					0	0	0	0
KIF11	3832	broad.mit.edu	37	10	94376578	94376578	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:94376578G>A	uc001kic.2	+	9	1425	c.1117G>A	c.(1117-1119)GCT>ACT	p.A373T	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	373	Potential.				blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						CACCAAAAAAGCTCTTATTAA	0.323		NA											16	89					0	0	0	0
PYROXD2	84795	broad.mit.edu	37	10	100167372	100167372	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:100167372C>T	uc001kpc.2	-	4	368	c.282G>A	c.(280-282)CTG>CTA	p.L94L	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Silent_p.L94L	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	94							oxidoreductase activity			central_nervous_system(1)	1						TCTGCGGCCTCAGCAGGCTGA	0.607		NA											6	45					0	0	0	0
ATRNL1	26033	broad.mit.edu	37	10	116889158	116889158	+	Silent	SNP	A	A	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:116889158A>G	uc001lcg.2	+	5	1076	c.690A>G	c.(688-690)CAA>CAG	p.Q230Q	ATRNL1_uc001lce.2_RNA|ATRNL1_uc001lcf.2_Silent_p.Q230Q|ATRNL1_uc009xyq.2_Silent_p.Q230Q	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	230	EGF-like 2.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TTCCAAGTCAAGTATATTGTG	0.373		NA											6	115					0	0	0	0
C10orf82	143379	broad.mit.edu	37	10	118425270	118425270	+	Silent	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:118425270G>T	uc001lcr.2	-	3	178	c.123C>A	c.(121-123)ACC>ACA	p.T41T	C10orf82_uc001lcs.1_Silent_p.T41T	NM_144661	NP_653262	Q8WW14	CJ082_HUMAN	hypothetical protein LOC143379	41											0				all cancers(201;0.0143)		TCTCCTGGAAGGTTTTCACAC	0.532		NA											11	103					0.00136819	0.0014251	1	0
IKZF5	64376	broad.mit.edu	37	10	124753991	124753991	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr10:124753991G>A	uc001lha.2	-	5	864	c.565C>T	c.(565-567)CTG>TTG	p.L189L	IKZF5_uc001lgz.2_Silent_p.L27L	NM_022466	NP_071911	Q9H5V7	IKZF5_HUMAN	zinc finger protein, subfamily 1A, 5	189					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_neural(114;0.169)|Colorectal(57;0.178)|Glioma(114;0.222)		Colorectal(40;0.0701)|COAD - Colon adenocarcinoma(40;0.0754)		CTATAGCCCAGATTGCTTGTT	0.413		NA											43	279					0	0	0	0
DCHS1	8642	broad.mit.edu	37	11	6643167	6643167	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:6643167G>A	uc001mem.1	-	21	10150	c.9740C>T	c.(9739-9741)TCA>TTA	p.S3247L	TPP1_uc001mek.1_5'Flank|TPP1_uc001mel.1_5'Flank|TPP1_uc010rar.1_5'Flank	NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	3247	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATGGCAGCTGAGGACAGGGA	0.632		NA											8	20					0	0	0	0
NAV2	89797	broad.mit.edu	37	11	20067214	20067214	+	Silent	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:20067214C>A	uc010rdm.1	+	15	4330	c.3969C>A	c.(3967-3969)CGC>CGA	p.R1323R	NAV2_uc001mpp.2_Silent_p.R1236R|NAV2_uc001mpr.3_Silent_p.R1300R|NAV2_uc001mpt.2_Silent_p.R386R|NAV2_uc009yhx.2_Silent_p.R386R|NAV2_uc009yhy.1_Silent_p.R299R	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	1323						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CCACACTCCGCAGGTAAGTGA	0.517		NA											16	39					5.01e-05	5.32e-05	1	0
ANO3	63982	broad.mit.edu	37	11	26552873	26552873	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:26552873C>T	uc001mqt.3	+	8	1004	c.859C>T	c.(859-861)CGG>TGG	p.R287W	ANO3_uc010rdr.1_Missense_Mutation_p.R271W|ANO3_uc010rds.1_Missense_Mutation_p.R126W|ANO3_uc010rdt.1_Missense_Mutation_p.R141W	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	287	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAGCCGTGCACGGATTCACCA	0.453		NA											4	180					0	0	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57080450	57080450	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:57080450G>A	uc001njr.2	-	4	2024	c.1712C>T	c.(1711-1713)CCC>CTC	p.P571L	TNKS1BP1_uc001njs.2_Missense_Mutation_p.P571L|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.P22L	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	571	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TGTAGGCAGGGGCTCAAGGGG	0.597		NA											21	74					0	0	0	0
CCDC87	55231	broad.mit.edu	37	11	66358149	66358149	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:66358149C>G	uc001oiq.3	-	1	2406	c.2338G>C	c.(2338-2340)GAG>CAG	p.E780Q	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	780										ovary(1)|skin(1)	2						AAAGAAGACTCCATTAAGTTG	0.498		NA											43	237					0	0	0	0
CCDC87	55231	broad.mit.edu	37	11	66358638	66358638	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:66358638C>T	uc001oiq.3	-	1	1917	c.1849G>A	c.(1849-1851)GAA>AAA	p.E617K	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	617										ovary(1)|skin(1)	2						ACCTCTTCTTCATGCATTTGA	0.468		NA											44	144					0	0	0	0
PC	5091	broad.mit.edu	37	11	66619400	66619400	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:66619400C>T	uc001ojn.1	-	14	1892	c.1843G>A	c.(1843-1845)GCC>ACC	p.A615T	PC_uc001ojo.1_Missense_Mutation_p.A615T|PC_uc001ojp.1_Missense_Mutation_p.A615T|PC_uc001ojm.1_5'Flank	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	615	Carboxyltransferase.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	AAGCGCATGGCGACGTCAAAC	0.637		NA											7	37					0	0	0	0
SUV420H1	51111	broad.mit.edu	37	11	67925239	67925239	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:67925239C>G	uc001onm.1	-	11	2830	c.2574G>C	c.(2572-2574)TTG>TTC	p.L858F	SUV420H1_uc009yse.1_Missense_Mutation_p.L444F|SUV420H1_uc001onn.1_Missense_Mutation_p.L686F|SUV420H1_uc009ysf.2_Missense_Mutation_p.L618F	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	858					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						CTATTAACCTCAAGCGCTTAG	0.403		NA											17	73					0	0	0	0
FUT4	2526	broad.mit.edu	37	11	94278550	94278550	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:94278550G>A	uc001pez.2	+	1	1534	c.1251G>A	c.(1249-1251)CAG>CAA	p.Q417Q	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_5'Flank	NM_002033	NP_002024	P22083	FUT4_HUMAN	fucosyltransferase 4	417	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	alpha(1,3)-fucosyltransferase activity			skin(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGAACTCGCAGCACCTGGATT	0.652		NA											3	39					0	0	0	0
ZBTB16	7704	broad.mit.edu	37	11	114027138	114027138	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:114027138C>T	uc001pop.2	+	3	1612	c.1348C>T	c.(1348-1350)CAC>TAC	p.H450Y	ZBTB16_uc001poo.1_Missense_Mutation_p.H450Y|ZBTB16_uc001poq.2_Missense_Mutation_p.H450Y	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	450	C2H2-type 2.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		GCTGAGAATGCACTTACTGGC	0.547		NA											8	51					0	0	0	0
TECTA	7007	broad.mit.edu	37	11	120996298	120996298	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr11:120996298G>C	uc010rzo.1	+	7	1491	c.1491G>C	c.(1489-1491)TGG>TGC	p.W497C		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	497	VWFD 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACGCAGACTGGAAGTGCGACT	0.587		NA											30	96					0	0	0	0
NRIP2	83714	broad.mit.edu	37	12	2939891	2939891	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:2939891G>A	uc001qlc.2	-	2	550	c.478C>T	c.(478-480)CTT>TTT	p.L160F	NRIP2_uc010sed.1_Missense_Mutation_p.L160F	NM_031474	NP_113662	Q9BQI9	NRIP2_HUMAN	nuclear receptor interacting protein 2	160					proteolysis|transcription, DNA-dependent	cytoplasm|nucleus	aspartic-type endopeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			TTGACCAGAAGAGCTGGAATC	0.572		NA											32	62					0	0	0	0
CLEC4C	170482	broad.mit.edu	37	12	7883477	7883477	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:7883477G>T	uc001qtg.1	-	5	587	c.413C>A	c.(412-414)TCT>TAT	p.S138Y	CLEC4C_uc001qth.1_Missense_Mutation_p.S138Y|CLEC4C_uc001qti.1_Missense_Mutation_p.S107Y	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	138	Extracellular (Potential).|C-type lectin.				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		AAAATAAGAAGAATTTCTTTT	0.343		NA											52	106					2.17e-26	2.47e-26	1	0
TMEM106C	79022	broad.mit.edu	37	12	48359698	48359698	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:48359698C>T	uc001rqp.2	+	4	444	c.329C>T	c.(328-330)TCA>TTA	p.S110L	TMEM106C_uc001rqo.2_Missense_Mutation_p.S110L|TMEM106C_uc001rqr.2_Missense_Mutation_p.S110L|TMEM106C_uc001rqq.2_Missense_Mutation_p.S110L	NM_024056	NP_076961	Q9BVX2	T106C_HUMAN	transmembrane protein 106C isoform a	110						endoplasmic reticulum membrane|integral to membrane					0		Acute lymphoblastic leukemia(13;0.11)		GBM - Glioblastoma multiforme(48;0.241)		TTTCCGCATTCAGTCCTTGTG	0.448		NA											200	368					0	0	0	0
COL2A1	1280	broad.mit.edu	37	12	48388219	48388219	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:48388219C>T	uc001rqu.2	-	12	985	c.804G>A	c.(802-804)CCG>CCA	p.P268P	COL2A1_uc001rqv.2_Silent_p.P199P	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	268	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GAGGACCAGGCGGACCCCTTT	0.557		NA											16	53					0	0	0	0
ANO4	121601	broad.mit.edu	37	12	101493406	101493406	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:101493406C>A	uc010svm.1	+	22	2629	c.2057C>A	c.(2056-2058)CCT>CAT	p.P686H	ANO4_uc001thw.2_Missense_Mutation_p.P651H|ANO4_uc001thx.2_Missense_Mutation_p.P686H|ANO4_uc001thy.2_Missense_Mutation_p.P206H	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	686	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						GAACATGGACCTGAAAGGAAA	0.363		NA								HNSCC(74;0.22)			48	84					2.13e-23	2.42e-23	1	0
NAA25	80018	broad.mit.edu	37	12	112492280	112492280	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:112492280G>A	uc001ttm.2	-	14	1560	c.1540C>T	c.(1540-1542)CGA>TGA	p.R514*	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Nonsense_Mutation_p.R486*|NAA25_uc009zwa.1_Nonsense_Mutation_p.R514*	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	514						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						CAGTAGATTCGAACAAGCAGC	0.478		NA											21	86					0	0	0	0
OAS2	4939	broad.mit.edu	37	12	113445710	113445710	+	Silent	SNP	C	C	T	rs45514594	byFrequency	TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:113445710C>T	uc001tuj.2	+	9	1997	c.1857C>T	c.(1855-1857)ACC>ACT	p.T619T	OAS2_uc001tui.1_Silent_p.T619T	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	619	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						AAGATGAGACCGTGAGGAAGT	0.483		NA											5	322					0	0	0	0
GATC	283459	broad.mit.edu	37	12	120884532	120884532	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:120884532G>A	uc010szi.1	+	2	154	c.154G>A	c.(154-156)GAG>AAG	p.E52K	TRIAP1_uc001tyg.2_5'Flank	NM_176818	NP_789788	O43716	GATCL_HUMAN	glutamyl-tRNA(Gln) amidotransferase, subunit C	52					regulation of translational fidelity						0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGGCAGCCGCGAGGCAGTGGC	0.672		NA											16	38					0	0	0	0
GPR133	283383	broad.mit.edu	37	12	131593382	131593382	+	Silent	SNP	G	G	A	rs60880996	byFrequency	TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr12:131593382G>A	uc001uit.3	+	18	2560	c.2001G>A	c.(1999-2001)TCG>TCA	p.S667S	GPR133_uc010tbm.1_Silent_p.S699S|GPR133_uc009zyo.2_Intron|GPR133_uc001uiv.1_Silent_p.S186S|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	667	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		TCTTTGGGTCGGAGGACAGCA	0.348		NA											73	141					0	0	0	0
CARS2	79587	broad.mit.edu	37	13	111340150	111340150	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr13:111340150C>T	uc001vrd.2	-	5	529	c.489G>A	c.(487-489)CTG>CTA	p.L163L	CARS2_uc010tjm.1_RNA	NM_024537	NP_078813	Q9HA77	SYCM_HUMAN	cysteinyl-tRNA synthetase 2, mitochondrial	163					cysteinyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|cysteine-tRNA ligase activity|metal ion binding				0	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.163)		L-Cysteine(DB00151)	CGGTTACCCTCAGGTACACCG	0.478		NA											42	176					0	0	0	0
OR4E2	26686	broad.mit.edu	37	14	22133750	22133750	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr14:22133750G>A	uc010tmd.1	+	1	454	c.454G>A	c.(454-456)GGT>AGT	p.G152S		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CTGGTTGGGGGGTACTGTTCA	0.478		NA											35	219					0	0	0	0
PRMT5	10419	broad.mit.edu	37	14	23395383	23395383	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr14:23395383G>A	uc001whm.1	-	7	827	c.736C>T	c.(736-738)CTT>TTT	p.L246F	PRMT5_uc001whl.1_Missense_Mutation_p.L229F|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_Missense_Mutation_p.L140F|PRMT5_uc010tng.1_Missense_Mutation_p.L185F|PRMT5_uc010tnh.1_Missense_Mutation_p.L202F|PRMT5_uc001whn.1_Intron	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	246					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		ATCTTAGAAAGAACAGGAAAT	0.478		NA											49	133					0	0	0	0
MYH6	4624	broad.mit.edu	37	14	23858700	23858700	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr14:23858700C>T	uc001wjv.2	-	28	3947	c.3880G>A	c.(3880-3882)GAG>AAG	p.E1294K	uc010tnn.1_5'Flank|MIR208A_hsa-mir-208a|MI0000251_5'Flank	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1294	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TCCTTTTCCTCTAGCTGCCGG	0.587		NA											9	159					0	0	0	0
CMA1	1215	broad.mit.edu	37	14	24976609	24976609	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr14:24976609G>C	uc001wpp.1	-	2	192	c.162C>G	c.(160-162)TTC>TTG	p.F54L	CMA1_uc010alx.1_Intron	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	54	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		GTCTTATAAGGAAACCACCAC	0.483		NA											58	273					0	0	0	0
DAAM1	23002	broad.mit.edu	37	14	59819342	59819342	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr14:59819342G>C	uc001xdz.1	+	19	2414	c.2289G>C	c.(2287-2289)GAG>GAC	p.E763D	DAAM1_uc001xea.1_Missense_Mutation_p.E753D|DAAM1_uc001xec.1_5'Flank	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	763	FH2.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		TCCTTTTTGAGATGAGCCGGT	0.398		NA											15	46					0	0	0	0
ACTC1	70	broad.mit.edu	37	15	35086908	35086908	+	Silent	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr15:35086908C>A	uc001ziu.1	-	2	345	c.102G>T	c.(100-102)CCG>CCT	p.P34P	uc001zit.1_Intron	NM_005159	NP_005150	P68032	ACTC_HUMAN	cardiac muscle alpha actin 1 proprotein	34					apoptosis|cardiac muscle tissue morphogenesis|cardiac myofibril assembly|muscle filament sliding|skeletal muscle thin filament assembly	actomyosin, actin part|cytosol|I band	ATP binding|ATPase activity|myosin binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(180;2.3e-08)		all cancers(64;5.83e-19)|GBM - Glioblastoma multiforme(113;1.98e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CCACGATGGACGGGAAGACAG	0.682		NA											20	82					3.52e-12	3.92e-12	1	0
DUOX1	53905	broad.mit.edu	37	15	45426426	45426426	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr15:45426426C>T	uc001zus.1	+	5	572	c.226C>T	c.(226-228)CGA>TGA	p.R76*	DUOX1_uc001zut.1_Nonsense_Mutation_p.R76*|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	76	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		GCCCAACCCCCGAGACCTTAG	0.627		NA											18	144					0	0	0	0
UNC13C	440279	broad.mit.edu	37	15	54306794	54306794	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr15:54306794C>T	uc002ack.2	+	1	1694	c.1694C>T	c.(1693-1695)TCA>TTA	p.S565L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	565					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GAAGATTTTTCAGAAAATCAG	0.423		NA											9	74					0	0	0	0
AAGAB	79719	broad.mit.edu	37	15	67528335	67528335	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr15:67528335C>T	uc002aqk.3	-	4	538	c.433G>A	c.(433-435)GAG>AAG	p.E145K	AAGAB_uc002aql.2_Missense_Mutation_p.E36K|AAGAB_uc010uju.1_Missense_Mutation_p.E36K	NM_024666	NP_078942	Q6PD74	AAGAB_HUMAN	alpha- and gamma-adaptin-binding protein p34	145					protein transport	cytoplasm					0						TCAGGCAACTCCTCTGGACTA	0.353		NA											40	236					0	0	0	0
MEX3B	84206	broad.mit.edu	37	15	82336383	82336383	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr15:82336383G>A	uc002bgq.1	-	2	1143	c.828C>T	c.(826-828)CCC>CCT	p.P276P		NM_032246	NP_115622	Q6ZN04	MEX3B_HUMAN	mex-3 homolog B	276					protein autophosphorylation	cytoplasmic mRNA processing body|nucleus	calcium ion binding|RNA binding|zinc ion binding			breast(1)|kidney(1)	2						GCTTGCGGCCGGGGGTGGGCG	0.662		NA											10	46					0	0	0	0
ALPK3	57538	broad.mit.edu	37	15	85400161	85400161	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr15:85400161G>A	uc002ble.2	+	6	2965	c.2798G>A	c.(2797-2799)AGC>AAC	p.S933N		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	933					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GTGGCAACCAGCCTCGGCCCA	0.582		NA											27	158					0	0	0	0
HAGH	3029	broad.mit.edu	37	16	1859322	1859322	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:1859322G>A	uc002cna.2	-	9	1296	c.889C>T	c.(889-891)CGC>TGC	p.R297C	HAGH_uc002cmz.2_Missense_Mutation_p.R249C|HAGH_uc010uvp.1_3'UTR|HAGH_uc002cnb.1_3'UTR	NM_005326	NP_005317	Q16775	GLO2_HUMAN	hydroxyacylglutathione hydrolase isoform 1	297	Substrate.				glutathione biosynthetic process	cytoplasm|mitochondrial matrix|mitochondrial matrix	hydroxyacylglutathione hydrolase activity|zinc ion binding			ovary(1)	1		Hepatocellular(780;0.00335)			Glutathione(DB00143)	TTCTCCCTGCGCACGGCCCGC	0.652		NA											7	269					0	0	0	0
PKMYT1	9088	broad.mit.edu	37	16	3024073	3024073	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:3024073G>T	uc002csn.2	-	7	1681	c.1238C>A	c.(1237-1239)CCG>CAG	p.P413Q	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Missense_Mutation_p.P413Q|PKMYT1_uc002cso.2_Missense_Mutation_p.P344Q|PKMYT1_uc002csp.2_Missense_Mutation_p.P404Q|PKMYT1_uc002csq.2_Missense_Mutation_p.P404Q|PKMYT1_uc010bsy.1_Missense_Mutation_p.P404Q	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	413	Interaction with PIN1.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						TGAGCCAGGCGGGGTGGCTGG	0.677		NA											5	28					1.24e-05	1.32e-05	1	0
MEFV	4210	broad.mit.edu	37	16	3293683	3293683	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:3293683G>T	uc002cun.1	-	10	1844	c.1804C>A	c.(1804-1806)CTG>ATG	p.L602M		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	602	B30.2/SPRY.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	TCTGCATCCAGAATCACATTA	0.498		NA											64	375					5.82e-37	6.65e-37	1	0
KIAA0430	9665	broad.mit.edu	37	16	15733071	15733071	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:15733071G>T	uc002ddr.2	-	2	213	c.20C>A	c.(19-21)ACT>AAT	p.T7N	KIAA0430_uc002ddq.2_Missense_Mutation_p.T6N|KIAA0430_uc010uzv.1_Missense_Mutation_p.T6N|KIAA0430_uc010uzw.1_Missense_Mutation_p.T6N|KIAA0430_uc010uzx.1_Missense_Mutation_p.T6N	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	6						peroxisome	nucleotide binding|RNA binding				0						GGAGTTCTCAGTTCCGTTTCC	0.408		NA											5	269					0.000602214	0.000630683	1	0
CYLD	1540	broad.mit.edu	37	16	50788321	50788321	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:50788321A>G	uc002egp.1	+	6	1314	c.899A>G	c.(898-900)AAT>AGT	p.N300S	CYLD_uc002egn.1_Missense_Mutation_p.N300S|CYLD_uc002ego.2_Missense_Mutation_p.N300S|CYLD_uc010cbs.1_Missense_Mutation_p.N300S|CYLD_uc002egq.1_Missense_Mutation_p.N300S|CYLD_uc002egr.1_Missense_Mutation_p.N300S|CYLD_uc002egs.1_Missense_Mutation_p.N300S	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	300	Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				TTGCACATCAATGATATCATC	0.269		NA	Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				8	51					0	0	0	0
CHD9	80205	broad.mit.edu	37	16	53243560	53243560	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:53243560G>A	uc002ehb.2	+	2	1783	c.1619G>A	c.(1618-1620)CGT>CAT	p.R540H	CHD9_uc002egy.2_Missense_Mutation_p.R540H|CHD9_uc002egz.1_Missense_Mutation_p.R540H|CHD9_uc002eha.1_Missense_Mutation_p.R540H|CHD9_uc002ehc.2_Missense_Mutation_p.R540H|CHD9_uc002ehd.2_Missense_Mutation_p.R66H	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	540					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				GCAAAGGAGCGTGGGGAACGC	0.418		NA											29	90					0	0	0	0
KCTD19	146212	broad.mit.edu	37	16	67325248	67325248	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:67325248G>A	uc002esu.2	-	14	2580	c.2529C>T	c.(2527-2529)ATC>ATT	p.I843I	KCTD19_uc002est.2_Silent_p.I615I|KCTD19_uc010vjj.1_Silent_p.I586I	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	843						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		CCTTGGCTGTGATGGCTTTGG	0.557		NA											9	63					0	0	0	0
HYDIN	54768	broad.mit.edu	37	16	70902676	70902676	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:70902676G>A	uc002ezr.2	-	66	11232	c.11104C>T	c.(11104-11106)CCT>TCT	p.P3702S	HYDIN_uc010cfy.2_5'Flank	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3703										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCACACCCAGGGTGGAGGTGG	0.463		NA											13	33					0	0	0	0
CHST6	4166	broad.mit.edu	37	16	75512869	75512869	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:75512869C>T	uc002fef.2	-	3	1038	c.858G>A	c.(856-858)GCG>GCA	p.A286A	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Silent_p.A286A	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	286	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						AGGCGTAGAGCGCACGGATTT	0.672		NA											8	64					0	0	0	0
TAF1C	9013	broad.mit.edu	37	16	84214952	84214952	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr16:84214952C>T	uc002fhn.2	-	10	1452	c.1224G>A	c.(1222-1224)GTG>GTA	p.V408V	TAF1C_uc002fhm.2_Silent_p.V315V|TAF1C_uc010vnx.1_Silent_p.V382V|TAF1C_uc010vny.1_5'UTR|TAF1C_uc010vnz.1_Silent_p.V76V|TAF1C_uc002fho.2_5'UTR|TAF1C_uc010voa.1_Silent_p.V76V|TAF1C_uc002fhp.1_Intron|TAF1C_uc010vob.1_3'UTR	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	408					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						CCAGCATCTTCACTCCGGTGC	0.697		NA											19	29					0	0	0	0
DHX33	56919	broad.mit.edu	37	17	5353646	5353646	+	Silent	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:5353646G>T	uc002gca.2	-	10	1607	c.1605C>A	c.(1603-1605)CTC>CTA	p.L535L	DHX33_uc002gbz.2_Silent_p.L306L|DHX33_uc002gcb.2_Silent_p.L362L|DHX33_uc010clf.2_Silent_p.L311L	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	535						nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						GAGGGTTGTGGAGGACGCTGT	0.522		NA											8	294					2.74e-10	3.02e-10	1	0
DHX33	56919	broad.mit.edu	37	17	5364405	5364405	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:5364405C>A	uc002gca.2	-	4	705	c.703G>T	c.(703-705)GAT>TAT	p.D235Y	DHX33_uc002gbz.2_Missense_Mutation_p.D6Y|DHX33_uc002gcb.2_Missense_Mutation_p.D62Y|DHX33_uc010clf.2_Intron	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	235	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						AGGTCCACATCCATCGTAGCT	0.517		NA											36	185					1.91e-15	2.14e-15	1	0
KCTD11	147040	broad.mit.edu	37	17	7256895	7256895	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:7256895G>C	uc002gge.3	+	1	1688	c.634G>C	c.(634-636)GAC>CAC	p.D212H	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	212					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				CTTCCGACTAGACTCTGTCTT	0.642		NA											4	65					0	0	0	0
TEKT3	64518	broad.mit.edu	37	17	15217494	15217494	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:15217494G>A	uc002gon.2	-	6	975	c.788C>T	c.(787-789)ACG>ATG	p.T263M		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	263					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		CCGGTAAGCCGTCTGTTTGTC	0.557		NA											11	64					0	0	0	0
RAI1	10743	broad.mit.edu	37	17	17701461	17701461	+	Silent	SNP	G	G	A	rs146112263	byFrequency	TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:17701461G>A	uc002grm.2	+	3	5668	c.5199G>A	c.(5197-5199)TCG>TCA	p.S1733S	RAI1_uc002grn.1_Silent_p.S1733S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1733						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		AGGAGGCCTCGCTGCCGCTTG	0.642		NA											10	49					0	0	0	0
PTRH2	51651	broad.mit.edu	37	17	57775025	57775025	+	Silent	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:57775025G>C	uc002ixt.2	-	2	440	c.315C>G	c.(313-315)CTC>CTG	p.L105L	PTRH2_uc002ixs.2_RNA	NM_016077	NP_057161	Q9Y3E5	PTH2_HUMAN	Bcl-2 inhibitor of transcription precursor	105					apoptosis|translation	mitochondrion	aminoacyl-tRNA hydrolase activity				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CCCATTGTTTGAGCATTTCAG	0.463		NA											11	242					0	0	0	0
COG1	9382	broad.mit.edu	37	17	71193179	71193179	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:71193179G>A	uc002jjg.2	+	3	737	c.701G>A	c.(700-702)AGA>AAA	p.R234K	COG1_uc002jjh.2_Missense_Mutation_p.R234K|COG1_uc002jjf.1_Missense_Mutation_p.R234K	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	234					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			CTGCTGGCCAGAAAGGCAACT	0.522		NA											6	54					0	0	0	0
BAHCC1	57597	broad.mit.edu	37	17	79428095	79428095	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr17:79428095G>A	uc002kaf.2	+	24	6406	c.6406G>A	c.(6406-6408)GAG>AAG	p.E2136K	BAHCC1_uc002kae.2_Missense_Mutation_p.E1366K	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	2136							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			GCGGGCCCGCGAGGCCCTGTT	0.682		NA											4	18					0	0	0	0
MC2R	4158	broad.mit.edu	37	18	13885287	13885287	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr18:13885287C>T	uc002ksp.1	-	2	408	c.231G>A	c.(229-231)AAG>AAA	p.K77K		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	77	Helical; Name=2; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	TTTCCAAGATCTTATATAGGC	0.448		NA											6	108					0	0	0	0
CDH19	28513	broad.mit.edu	37	18	64239324	64239324	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr18:64239324T>A	uc002lkc.1	-	2	256	c.118A>T	c.(118-120)AGA>TGA	p.R40*	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Nonsense_Mutation_p.R40*|CDH19_uc002lkd.2_Nonsense_Mutation_p.R40*	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	40					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				CGCTTCACTCTCAAATGAGAT	0.423		NA											20	113					0	0	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2408478	2408478	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:2408478G>A	uc010xgx.1	+	7	865	c.865G>A	c.(865-867)GCC>ACC	p.A289T	TMPRSS9_uc002lvv.1_Missense_Mutation_p.A323T	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	289	Extracellular (Potential).|Peptidase S1 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCGGACACGGCCGACTTTGA	0.677		NA											4	162					0	0	0	0
FBN3	84467	broad.mit.edu	37	19	8156457	8156457	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:8156457C>G	uc002mjf.2	-	47	5944	c.5923G>C	c.(5923-5925)GAG>CAG	p.E1975Q	FBN3_uc002mje.2_5'Flank	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1975	EGF-like 32; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TTGGGCTCCTCTGAGCACTCG	0.602		NA											16	95					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9067136	9067136	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:9067136C>T	uc002mkp.2	-	3	20514	c.20310G>A	c.(20308-20310)CAG>CAA	p.Q6770Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6772	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGAAATTCCTGAGTCGCCA	0.488		NA											125	201					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9076191	9076191	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:9076191G>A	uc002mkp.2	-	3	11459	c.11255C>T	c.(11254-11256)TCA>TTA	p.S3752L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3753	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGAGGAGCTGAGGTAGTGGC	0.522		NA											34	66					0	0	0	0
WIZ	58525	broad.mit.edu	37	19	15547866	15547866	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:15547866C>T	uc002nbb.3	-	3	494	c.280G>A	c.(280-282)GGC>AGC	p.G94S		NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	884	C2H2-type 7.					nucleus	zinc ion binding				0						CTGGAGAGGCCGGCCCGTGTG	0.632		NA											6	25					0	0	0	0
HAUS8	93323	broad.mit.edu	37	19	17173586	17173586	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:17173586G>A	uc002nfe.2	-	4	262	c.151C>T	c.(151-153)CCT>TCT	p.P51S	HAUS8_uc002nff.2_Missense_Mutation_p.P51S|HAUS8_uc002nfg.1_5'UTR|HAUS8_uc002nfh.1_Missense_Mutation_p.P51S	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	51					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole					0						TCTCCTGCAGGAGCCTGTTAT	0.532		NA											13	88					0	0	0	0
KIAA0892	23383	broad.mit.edu	37	19	19465201	19465201	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:19465201C>T	uc002nmk.3	+	17	1625	c.1586C>T	c.(1585-1587)GCC>GTC	p.A529V	KIAA0892_uc002nml.3_Missense_Mutation_p.A134V|KIAA0892_uc010ecd.2_Missense_Mutation_p.A134V|KIAA0892_uc010ece.2_Missense_Mutation_p.A105V	NM_015329	NP_056144	Q9Y6X3	SCC4_HUMAN	hypothetical protein LOC23383 precursor	529	TPR 4.				cell division|maintenance of mitotic sister chromatid cohesion	chromatin|nucleoplasm|SMC loading complex	protein N-terminus binding				0						ATGCAGCTCGCCAGCAAGATC	0.627		NA											9	74					0	0	0	0
ZNF430	80264	broad.mit.edu	37	19	21240159	21240159	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:21240159G>A	uc002npj.2	+	5	1155	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K	ZNF430_uc002npk.2_Missense_Mutation_p.E348K	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	349	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						CAAATGTGAAGAATGTGGCAA	0.393		NA											56	98					0	0	0	0
PDCD2L	84306	broad.mit.edu	37	19	34912449	34912449	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:34912449T>A	uc002nvj.2	+	6	856	c.823T>A	c.(823-825)TTT>ATT	p.F275I		NM_032346	NP_115722	Q9BRP1	PDD2L_HUMAN	programmed cell death 2-like	275						cytoplasm				ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			AGAGCCACTCTTTTTGACCTG	0.512		NA											16	378					0	0	0	0
ZBTB32	27033	broad.mit.edu	37	19	36205789	36205789	+	Silent	SNP	T	T	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:36205789T>C	uc002oay.2	+	2	471	c.261T>C	c.(259-261)CCT>CCC	p.P87P	ZBTB32_uc002oaz.2_RNA	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	87	BTB.				DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCTGCAGCCTGGAGAGCTAA	0.627		NA											3	150					0	0	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580486	40580486	+	Silent	SNP	A	A	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:40580486A>G	uc002omy.2	-	6	2088	c.1863T>C	c.(1861-1863)GTT>GTC	p.V621V	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Silent_p.V621V|ZNF780A_uc010xvh.1_Silent_p.V622V	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	621	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GAAGACTAAAAACCTTTCCAC	0.413		NA											39	166					0	0	0	0
ZNF155	7711	broad.mit.edu	37	19	44500287	44500287	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:44500287G>A	uc002oxy.1	+	5	483	c.278G>A	c.(277-279)GGA>GAA	p.G93E	ZNF155_uc002oxz.1_Missense_Mutation_p.G93E|ZNF155_uc010xwt.1_Missense_Mutation_p.G104E	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	93						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				CCAGAAGCAGGAGCACATGAA	0.418		NA											22	120					0	0	0	0
SYMPK	8189	broad.mit.edu	37	19	46324705	46324705	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:46324705C>T	uc002pdn.2	-	22	3075	c.2830G>A	c.(2830-2832)GAG>AAG	p.E944K	SYMPK_uc002pdo.1_Missense_Mutation_p.E944K|SYMPK_uc002pdp.1_Missense_Mutation_p.E944K	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	944					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		ATCAGGAGCTCTCCAGGGTTC	0.587		NA											3	61					0	0	0	0
TRPM4	54795	broad.mit.edu	37	19	49693515	49693515	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:49693515C>G	uc002pmw.2	+	15	2142	c.2070C>G	c.(2068-2070)ATC>ATG	p.I690M	TRPM4_uc010emu.2_Missense_Mutation_p.I690M|TRPM4_uc010yak.1_Missense_Mutation_p.I154M|TRPM4_uc002pmx.2_Missense_Mutation_p.I516M|TRPM4_uc010emv.2_Missense_Mutation_p.I575M|TRPM4_uc010yal.1_Missense_Mutation_p.I336M|TRPM4_uc002pmy.2_Missense_Mutation_p.I32M	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	690	Helical; (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CTACACCCATCTGGGCCCTGG	0.602		NA											53	364					0	0	0	0
C19orf41	126123	broad.mit.edu	37	19	50666297	50666297	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:50666297C>T	uc002prp.1	-	1	242	c.155G>A	c.(154-156)CGC>CAC	p.R52H		NM_152358	NP_689571	Q6UXV1	IZUM2_HUMAN	hypothetical protein LOC126123 precursor	52	Extracellular (Potential).					integral to membrane					0		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00364)|OV - Ovarian serous cystadenocarcinoma(262;0.0052)		GGCCCCGGCGCGCGCCTGCAG	0.667		NA											5	51					0	0	0	0
ZNF761	388561	broad.mit.edu	37	19	53958797	53958797	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:53958797C>T	uc010eqp.2	+	7	1494	c.1036C>T	c.(1036-1038)CGA>TGA	p.R346*	ZNF761_uc010ydy.1_Nonsense_Mutation_p.R292*|ZNF761_uc002qbt.1_Nonsense_Mutation_p.R292*	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	346	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		ACGCCATCATCGACTTCATAC	0.403		NA											49	198					0	0	0	0
CACNG7	59284	broad.mit.edu	37	19	54445546	54445546	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:54445546G>A	uc002qcr.1	+	5	842	c.827G>A	c.(826-828)TGA>TAA	p.*276*		NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	276					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		TCGCCCTGCTGAGGCCCGCCC	0.662		NA											48	209					0	0	0	0
ZNF550	162972	broad.mit.edu	37	19	58059066	58059066	+	Silent	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr19:58059066G>T	uc002qpe.1	-	2	423	c.423C>A	c.(421-423)CTC>CTA	p.L141L	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF550_uc002qpc.2_RNA|ZNF550_uc010eue.1_RNA|ZNF550_uc002qpd.2_RNA	NM_001039654	NP_001034743	Q7Z398	ZN550_HUMAN	zinc finger protein 550	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CACATTCATGGAGAACATCTG	0.483		NA											15	363					6.72e-11	7.42e-11	1	0
NT5C1B	93034	broad.mit.edu	37	2	18765901	18765901	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:18765901C>T	uc002rcz.2	-	5	886	c.782G>A	c.(781-783)CGC>CAC	p.R261H	NT5C1B_uc002rcy.2_Missense_Mutation_p.R261H|NT5C1B_uc010exr.2_Missense_Mutation_p.R203H|NT5C1B_uc010yju.1_Missense_Mutation_p.R201H|NT5C1B_uc002rda.2_Missense_Mutation_p.R201H|NT5C1B_uc010yjv.1_Missense_Mutation_p.R278H|NT5C1B_uc010yjw.1_Missense_Mutation_p.R244H|NT5C1B_uc010exs.2_Missense_Mutation_p.R263H|NT5C1B_uc002rdb.1_Missense_Mutation_p.R53H	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	261					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				CAGAGAGTTGCGGTCCAGCTG	0.652		NA											4	24					0	0	0	0
ADCY3	109	broad.mit.edu	37	2	25042974	25042974	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:25042974C>T	uc002rfs.3	-	21	3461	c.3262G>A	c.(3262-3264)GAA>AAA	p.E1088K	ADCY3_uc002rfr.3_Missense_Mutation_p.E675K|ADCY3_uc010ykm.1_Missense_Mutation_p.E1089K	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	1088	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					ACTTGGGTTTCTTCTACCACC	0.612		NA											8	82					0	0	0	0
LTBP1	4052	broad.mit.edu	37	2	33487804	33487804	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:33487804G>C	uc002ros.2	+	14	2434	c.2434G>C	c.(2434-2436)GAT>CAT	p.D812H	LTBP1_uc002rot.2_Missense_Mutation_p.D486H|LTBP1_uc002rou.2_Missense_Mutation_p.D486H|LTBP1_uc002rov.2_Missense_Mutation_p.D433H|LTBP1_uc010ymz.1_Missense_Mutation_p.D486H|LTBP1_uc010yna.1_Missense_Mutation_p.D433H	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	812					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				ACCTTCATTGGATCAAGAGAA	0.368		NA											11	107					0	0	0	0
FAM98A	25940	broad.mit.edu	37	2	33809952	33809952	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:33809952C>T	uc002rpa.1	-	8	1522	c.1448G>A	c.(1447-1449)AGA>AAA	p.R483K	FAM98A_uc010yne.1_Missense_Mutation_p.R288K|FAM98A_uc010ynd.1_Missense_Mutation_p.R314K|FAM98A_uc002roz.1_Missense_Mutation_p.R321K	NM_015475	NP_056290	Q8NCA5	FA98A_HUMAN	hypothetical protein LOC25940	484	Gly-rich.									ovary(1)	1	all_hematologic(175;0.115)					CTGGCTCCCTCTTCCTCCCCA	0.363		NA											46	300					0	0	0	0
C2orf3	6936	broad.mit.edu	37	2	75915055	75915055	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:75915055C>T	uc002sno.2	-	11	1718	c.1588G>A	c.(1588-1590)GAA>AAA	p.E530K	C2orf3_uc010ffs.2_Missense_Mutation_p.E92K|C2orf3_uc002snn.2_Missense_Mutation_p.E361K|C2orf3_uc010fft.2_Missense_Mutation_p.E205K	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	530					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						TCCATAAATTCTTCTACAGAT	0.318		NA											4	134					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530589	80530589	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:80530589G>A	uc002sok.1	-	2	626	c.356C>T	c.(355-357)ACG>ATG	p.T119M	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	119	LRR 2.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						GGAACTCAGCGTGAGTTCCTT	0.582		NA								HNSCC(69;0.2)			58	179					0	0	0	0
PDCL3	79031	broad.mit.edu	37	2	101188229	101188229	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:101188229G>A	uc002tao.2	+	5	658	c.546G>A	c.(544-546)CTG>CTA	p.L182L		NM_024065	NP_076970	Q9H2J4	PDCL3_HUMAN	phosducin-like 3	182					apoptosis|interspecies interaction between organisms	cytoplasm	protein binding				0						TTGGTCCTCTGGTGTTTGGCG	0.493		NA											11	235					0	0	0	0
MRPS9	64965	broad.mit.edu	37	2	105708870	105708870	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:105708870C>T	uc002tcn.3	+	8	731	c.663C>T	c.(661-663)TTC>TTT	p.F221F		NM_182640	NP_872578	P82933	RT09_HUMAN	mitochondrial ribosomal protein S9 precursor	221					DNA damage response, detection of DNA damage|translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						ATATGCAGTTCATTCGGCTGC	0.353		NA											17	77					0	0	0	0
RGPD3	653489	broad.mit.edu	37	2	107049681	107049681	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:107049681T>C	uc010ywi.1	-	16	2323	c.2266A>G	c.(2266-2268)AAC>GAC	p.N756D		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	756					intracellular transport		binding			ovary(1)	1						TCACTATAGTTTTCGAGTTCC	0.373		NA											5	301					0	0	0	0
WDR33	55339	broad.mit.edu	37	2	128477169	128477169	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:128477169C>T	uc002tpg.1	-	16	2613	c.2430G>A	c.(2428-2430)ATG>ATA	p.M810I		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	810					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		GAGGTCCTCTCATCTCTTGAG	0.617		NA											12	100					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	142888281	142888281	+	Silent	SNP	G	G	C	rs139525868		TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:142888281G>C	uc002tvj.1	-	1	990	c.18C>G	c.(16-18)CTC>CTG	p.L6L	LRP1B_uc010fnl.1_Silent_p.L43L	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	6					protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGAGTAAGGCGAGGAGAAACT	0.522		NA								TSP Lung(27;0.18)			5	14					0	0	0	0
GTF3C3	9330	broad.mit.edu	37	2	197656160	197656160	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:197656160G>A	uc002uts.2	-	4	526	c.436C>T	c.(436-438)CCC>TCC	p.P146S	GTF3C3_uc010zgu.1_Missense_Mutation_p.P146S|GTF3C3_uc002utu.2_Missense_Mutation_p.P146S	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	146						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						AGAGCTCTGGGAAGTTTACTC	0.393		NA											6	109					0	0	0	0
FN1	2335	broad.mit.edu	37	2	216292957	216292957	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:216292957C>T	uc002vfa.2	-	6	1056	c.790G>A	c.(790-792)GGC>AGC	p.G264S	FN1_uc002vfb.2_Missense_Mutation_p.G264S|FN1_uc002vfc.2_Missense_Mutation_p.G264S|FN1_uc002vfd.2_Missense_Mutation_p.G264S|FN1_uc002vfe.2_Missense_Mutation_p.G264S|FN1_uc002vff.2_Missense_Mutation_p.G264S|FN1_uc002vfg.2_Missense_Mutation_p.G264S|FN1_uc002vfh.2_Missense_Mutation_p.G264S|FN1_uc002vfi.2_Missense_Mutation_p.G264S|FN1_uc002vfj.2_Missense_Mutation_p.G264S|FN1_uc002vfl.2_Missense_Mutation_p.G264S	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	264	Fibrin- and heparin-binding 1.|Fibronectin type-I 5.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCTCCTCGGCCGTTGCCTGTG	0.557		NA											43	96					0	0	0	0
RUFY4	285180	broad.mit.edu	37	2	218954013	218954013	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:218954013C>G	uc002vgw.2	+	13	2866	c.1022C>G	c.(1021-1023)TCT>TGT	p.S341C	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.S341C	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	514	FYVE-type.						metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CAGCATCTCTCTTCCATGGCT	0.458		NA											8	53					0	0	0	0
HDLBP	3069	broad.mit.edu	37	2	242196114	242196114	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr2:242196114G>A	uc002waz.2	-	6	786	c.558C>T	c.(556-558)ATC>ATT	p.I186I	HDLBP_uc002wba.2_Silent_p.I186I|HDLBP_uc002wbb.2_Silent_p.I207I|HDLBP_uc010fzn.1_5'UTR	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	186	KH 1.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		CTGGGCGTGGGATCTGGATTT	0.483		NA											6	135					0	0	0	0
GGT7	2686	broad.mit.edu	37	20	33444646	33444646	+	Silent	SNP	G	G	A	rs3746452		TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:33444646G>A	uc002xay.2	-	8	1108	c.1065C>T	c.(1063-1065)AGC>AGT	p.S355S	GGT7_uc002xaz.1_Silent_p.S372S	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	355	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						CCACAAGGGCGCTGTAATTGC	0.602		NA											4	32					0	0	0	0
TOP1	7150	broad.mit.edu	37	20	39744053	39744053	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:39744053G>T	uc002xjl.2	+	16	1927	c.1681G>T	c.(1681-1683)GAG>TAG	p.E561*	uc002xjn.1_Intron	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	561					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	CAAGCAGCCCGAGGATGATCT	0.378		NA	T	NUP98	AML*								19	121					8.05e-18	9.04e-18	1	0
L3MBTL	26013	broad.mit.edu	37	20	42163513	42163513	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:42163513G>A	uc010zwh.1	+	16	1736	c.1690G>A	c.(1690-1692)GCT>ACT	p.A564T	L3MBTL_uc002xkl.2_Missense_Mutation_p.A496T|L3MBTL_uc002xkm.2_Missense_Mutation_p.A496T|L3MBTL_uc010ggl.2_Missense_Mutation_p.A496T|L3MBTL_uc002xkn.1_Missense_Mutation_p.A255T|L3MBTL_uc002xko.2_Missense_Mutation_p.A148T	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	496	MBT 3.				chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CTGGATCGACGCTGACCACCC	0.577		NA											5	44					0	0	0	0
KCNK15	60598	broad.mit.edu	37	20	43379005	43379005	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:43379005C>T	uc002xmr.2	+	2	583	c.519C>T	c.(517-519)CTC>CTT	p.L173L		NM_022358	NP_071753	Q9H427	KCNKF_HUMAN	potassium family, subfamily K, member 15	173	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity				0		Myeloproliferative disorder(115;0.0122)				CCCTGGCCCTCGGGGCCGTCG	0.672		NA											12	53					0	0	0	0
WFDC8	90199	broad.mit.edu	37	20	44180733	44180733	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:44180733C>T	uc002xow.2	-	6	737	c.658G>A	c.(658-660)GAG>AAG	p.E220K	WFDC8_uc002xox.2_Missense_Mutation_p.E220K	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	220	WAP 3.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GGGCACTCCTCATCCTGCAGG	0.423		NA											8	305					0	0	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47639640	47639640	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:47639640G>T	uc002xtx.3	+	35	4829	c.4677G>T	c.(4675-4677)TTG>TTT	p.L1559F	ARFGEF2_uc010zyf.1_Missense_Mutation_p.L852F	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1559					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			AGTTGGAATTGATACAGACCA	0.453		NA											8	219					4.69e-08	5.1e-08	1	0
TSHZ2	128553	broad.mit.edu	37	20	51873085	51873085	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:51873085G>C	uc002xwo.2	+	2	4044	c.3088G>C	c.(3088-3090)GAC>CAC	p.D1030H		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	1030					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GTTTGTAACAGACGTGGATGA	0.483		NA											7	216					0	0	0	0
ZNF831	128611	broad.mit.edu	37	20	57769147	57769147	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:57769147G>A	uc002yan.2	+	1	3073	c.3073G>A	c.(3073-3075)GAC>AAC	p.D1025N		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1025						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GTTGGGGGGGGACAAGGGGGA	0.682		NA											6	71					0	0	0	0
PRPF6	24148	broad.mit.edu	37	20	62616302	62616302	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr20:62616302G>A	uc002yho.2	+	3	451	c.283G>A	c.(283-285)GAG>AAG	p.E95K	PRPF6_uc002yhp.2_Missense_Mutation_p.E95K	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	95					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					TGGACCCTACGAGAAAGATGA	0.448		NA											14	63					0	0	0	0
DONSON	29980	broad.mit.edu	37	21	34956969	34956969	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr21:34956969C>T	uc002ysk.2	-	4	779	c.712G>A	c.(712-714)GAT>AAT	p.D238N	DONSON_uc002ysn.1_Missense_Mutation_p.D121N|DONSON_uc002ysi.1_5'UTR|DONSON_uc002ysj.2_5'UTR|DONSON_uc002ysl.2_5'UTR|DONSON_uc010gme.2_Missense_Mutation_p.D211N|DONSON_uc002ysm.2_Missense_Mutation_p.D238N	NM_017613	NP_060083	Q9NYP3	DONS_HUMAN	downstream neighbor of SON	238					multicellular organismal development	nucleus				ovary(1)|central_nervous_system(1)	2						ATTTTTCTATCAGCTCCAATA	0.448		NA											4	112					0	0	0	0
CYTSA	23384	broad.mit.edu	37	22	24718349	24718349	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr22:24718349C>T	uc002zzw.2	+	5	1708	c.1401C>T	c.(1399-1401)CGC>CGT	p.R467R	CYTSA_uc002zzv.3_Silent_p.R467R|CYTSA_uc011ajq.1_Silent_p.R467R	NM_015330	NP_056145	Q69YQ0	CYTSA_HUMAN	cytospin A	467					cell cycle|cell division						0						AATACTTCCGCTCTCTTCTAG	0.408		NA											43	218					0	0	0	0
PIWIL3	440822	broad.mit.edu	37	22	25155901	25155901	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr22:25155901G>A	uc003abd.1	-	3	575	c.158C>T	c.(157-159)CCA>CTA	p.P53L	PIWIL3_uc011ajx.1_5'UTR|PIWIL3_uc011ajy.1_5'UTR|PIWIL3_uc010gut.1_Missense_Mutation_p.P53L	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	53					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						TCTAACCACTGGGACTTCCTC	0.567		NA											109	634					0	0	0	0
MYO18B	84700	broad.mit.edu	37	22	26286822	26286822	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr22:26286822C>T	uc003abz.1	+	26	4664	c.4414C>T	c.(4414-4416)CGG>TGG	p.R1472W	MYO18B_uc003aca.1_Missense_Mutation_p.R1353W|MYO18B_uc010guy.1_Missense_Mutation_p.R1354W|MYO18B_uc010guz.1_Missense_Mutation_p.R1353W|MYO18B_uc011aka.1_Missense_Mutation_p.R626W|MYO18B_uc011akb.1_Missense_Mutation_p.R985W	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1472	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ACAGGCCTTCCGGGAGGTCCA	0.612		NA											10	40					0	0	0	0
CARD10	29775	broad.mit.edu	37	22	37892475	37892475	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr22:37892475G>A	uc003asx.1	-	13	2043	c.2040C>T	c.(2038-2040)CCC>CCT	p.P680P	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_5'UTR|CARD10_uc003asw.1_Silent_p.P394P|CARD10_uc003asy.1_Silent_p.P680P	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	680					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					CCATCAGGGAGGGGAGTGTGG	0.637		NA											19	91					0	0	0	0
TAB1	10454	broad.mit.edu	37	22	39811028	39811028	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr22:39811028G>T	uc003axt.2	+	2	100	c.51G>T	c.(49-51)TGG>TGT	p.W17C	TAB1_uc003axr.2_Missense_Mutation_p.W93C|TAB1_uc011aok.1_5'UTR|TAB1_uc003axu.1_Missense_Mutation_p.W17C	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	17					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						AGCCAAGCTGGACAGATGACC	0.612		NA											9	31					2.81e-09	3.06e-09	1	0
SAMM50	25813	broad.mit.edu	37	22	44360402	44360402	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr22:44360402G>C	uc003bej.2	+	3	400	c.203G>C	c.(202-204)GGA>GCA	p.G68A	PNPLA3_uc010gzm.1_RNA|SAMM50_uc011aqd.1_5'UTR	NM_015380	NP_056195	Q9Y512	SAM50_HUMAN	sorting and assembly machinery component 50	68					protein import into mitochondrial outer membrane	integral to membrane|integral to membrane of membrane fraction|mitochondrial sorting and assembly machinery complex	protein binding			skin(1)	1		all_neural(38;0.0966)|Ovarian(80;0.105)|Glioma(61;0.222)				TGTGAAATTGGAGATGTTTTC	0.408		NA											21	151					0	0	0	0
MTMR14	64419	broad.mit.edu	37	3	9711137	9711137	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:9711137C>A	uc003brz.2	+	5	639	c.515C>A	c.(514-516)GCA>GAA	p.A172E	MTMR14_uc003bsa.2_Missense_Mutation_p.A172E|MTMR14_uc003bsb.2_Missense_Mutation_p.A172E|MTMR14_uc011ath.1_Intron|MTMR14_uc010hcl.2_Intron|MTMR14_uc003bsc.2_RNA	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	172						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					GATGCCTGGGCAGATGTGGAG	0.612		NA											17	101					2.35e-11	2.61e-11	1	0
EFHB	151651	broad.mit.edu	37	3	19961420	19961420	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:19961420G>A	uc003cbl.3	-	3	1097	c.901C>T	c.(901-903)CCT>TCT	p.P301S	EFHB_uc003cbm.2_Missense_Mutation_p.P171S	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	301					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						ACTCCAGCAGGTGGATATCTG	0.343		NA											31	159					0	0	0	0
ZCWPW2	152098	broad.mit.edu	37	3	28520338	28520338	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:28520338A>G	uc003ceh.2	+	5	694	c.526A>G	c.(526-528)AAA>GAA	p.K176E	ZCWPW2_uc003cei.2_Missense_Mutation_p.K176E|ZCWPW2_uc010hfo.2_Translation_Start_Site	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	176							zinc ion binding			ovary(2)	2						GAAGTGGTATAAAAGTGCACT	0.274		NA											10	81					0	0	0	0
TRANK1	9881	broad.mit.edu	37	3	36874112	36874112	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:36874112C>T	uc003cgj.2	-	12	5482	c.5180G>A	c.(5179-5181)CGC>CAC	p.R1727H		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2277					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCGGCGGTTGCGTGCGCTTTC	0.478		NA											5	112					0	0	0	0
DLEC1	9940	broad.mit.edu	37	3	38105339	38105339	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:38105339G>T	uc003cho.1	+	6	1123	c.1102G>T	c.(1102-1104)GAT>TAT	p.D368Y	DLEC1_uc003chp.1_Missense_Mutation_p.D368Y|DLEC1_uc010hgv.1_Missense_Mutation_p.D368Y|DLEC1_uc010hgw.1_Missense_Mutation_p.D67Y|DLEC1_uc003chq.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	368					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		CAGTTGTGCTGATACTCCAGT	0.303		NA											33	262					3.04e-20	3.43e-20	1	0
ITIH4	3700	broad.mit.edu	37	3	52850976	52850976	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:52850976C>G	uc003dfz.2	-	21	2431	c.2395G>C	c.(2395-2397)GAA>CAA	p.E799Q	ITIH4_uc011bel.1_Missense_Mutation_p.E513Q|ITIH4_uc003dfy.2_Missense_Mutation_p.E594Q|ITIH4_uc011bem.1_Missense_Mutation_p.E804Q|ITIH4_uc011ben.1_Missense_Mutation_p.E769Q	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	799					acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		ACCACGTGTTCAGGGGATGCG	0.582		NA											48	296					0	0	0	0
POPDC2	64091	broad.mit.edu	37	3	119367500	119367500	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:119367500C>T	uc003ecx.1	-	3	750	c.616G>A	c.(616-618)GAG>AAG	p.E206K	POPDC2_uc010hqw.1_Missense_Mutation_p.E206K|POPDC2_uc003ecy.1_Missense_Mutation_p.E24K	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	206						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		CATGAGGTCTCAGCAGTCAGA	0.473		NA											9	86					0	0	0	0
C3orf15	89876	broad.mit.edu	37	3	119434506	119434506	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:119434506G>A	uc003ede.3	+	6	675	c.598G>A	c.(598-600)GTT>ATT	p.V200I	C3orf15_uc003edc.2_Missense_Mutation_p.V200I|C3orf15_uc010hqy.1_Missense_Mutation_p.V200I|C3orf15_uc010hqz.2_Missense_Mutation_p.V138I|C3orf15_uc011bjd.1_Missense_Mutation_p.V74I|C3orf15_uc011bje.1_Missense_Mutation_p.V180I|C3orf15_uc010hra.1_5'UTR	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	200						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GGATGCTGACGTTCAAACAGA	0.463		NA											40	335					0	0	0	0
POLQ	10721	broad.mit.edu	37	3	121258366	121258366	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:121258366G>C	uc003eee.3	-	4	674	c.545C>G	c.(544-546)TCT>TGT	p.S182C		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	182	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		ATCCAATGAAGAGAAATGCCT	0.398		NA						DNA_polymerases_(catalytic_subunits)					6	237					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124418865	124418865	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:124418865C>T	uc003ehg.2	+	56	8108	c.7981C>T	c.(7981-7983)CGA>TGA	p.R2661*	KALRN_uc003ehk.2_Nonsense_Mutation_p.R964*	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2660					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGAGTTTGTGCGACTTCCAGA	0.597		NA											5	288					0	0	0	0
TF	7018	broad.mit.edu	37	3	133476692	133476692	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:133476692C>G	uc003epu.1	+	13	2678	c.950C>G	c.(949-951)TCT>TGT	p.S317C	TF_uc011blt.1_Missense_Mutation_p.S190C|TF_uc003epw.1_Intron|TF_uc003epv.1_Missense_Mutation_p.S317C	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	317	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	TTTAAGGACTCTGCCCACGGG	0.458		NA											20	191					0	0	0	0
PLSCR2	57047	broad.mit.edu	37	3	146171886	146171886	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:146171886A>G	uc003evv.1	-	6	719	c.386T>C	c.(385-387)CTA>CCA	p.L129P	PLSCR2_uc003evw.1_Missense_Mutation_p.L198P	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	129	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						AAACTTTGTTAGACATGGGTG	0.373		NA											12	147					0	0	0	0
MME	4311	broad.mit.edu	37	3	154886339	154886339	+	Missense_Mutation	SNP	T	T	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:154886339T>G	uc010hvr.1	+	19	2050	c.1839T>G	c.(1837-1839)AGT>AGG	p.S613R	MME_uc003fab.1_Missense_Mutation_p.S613R|MME_uc003fac.1_Missense_Mutation_p.S613R|MME_uc003fad.1_Missense_Mutation_p.S613R|MME_uc003fae.1_Missense_Mutation_p.S613R	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	613	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	AGTCTGCAAGTAACTTTAAGG	0.408		NA											50	156					0	0	0	0
PLCH1	23007	broad.mit.edu	37	3	155203166	155203166	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr3:155203166C>T	uc011bok.1	-	22	3254	c.2977G>A	c.(2977-2979)GAA>AAA	p.E993K	PLCH1_uc011boj.1_Missense_Mutation_p.E993K|PLCH1_uc011bol.1_Missense_Mutation_p.E955K	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	993					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TCTTTTCCTTCAATGTCTTTT	0.453		NA											13	198					0	0	0	0
TACC3	10460	broad.mit.edu	37	4	1730363	1730363	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr4:1730363G>A	uc003gdo.2	+	4	1342	c.1234G>A	c.(1234-1236)GAC>AAC	p.D412N	TACC3_uc010ibz.2_Missense_Mutation_p.D412N|TACC3_uc003gdp.2_Intron|TACC3_uc010ica.2_5'Flank	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	412						centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			CAAAATGGATGACCCAAACTT	0.632		NA											25	95					0	0	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6064157	6064157	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr4:6064157C>T	uc003giu.3	-	10	1718	c.1442G>A	c.(1441-1443)CGA>CAA	p.R481Q	JAKMIP1_uc010idb.1_Missense_Mutation_p.R481Q|JAKMIP1_uc010idc.1_Missense_Mutation_p.R296Q|JAKMIP1_uc010idd.1_Missense_Mutation_p.R481Q|JAKMIP1_uc011bwc.1_Missense_Mutation_p.R316Q|JAKMIP1_uc003giv.3_Missense_Mutation_p.R481Q|JAKMIP1_uc010ide.2_Missense_Mutation_p.R481Q	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	481	Mediates interaction with TYK2 and GABBR1.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						AGCCTCCTCTCGGGCTGTGGC	0.473		NA											17	71					0	0	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156638419	156638419	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr4:156638419G>C	uc003iov.2	+	9	2217	c.1681G>C	c.(1681-1683)GAT>CAT	p.D561H	GUCY1A3_uc010iqc.2_Missense_Mutation_p.D561H|GUCY1A3_uc003iow.2_Missense_Mutation_p.D561H|GUCY1A3_uc010iqd.2_Missense_Mutation_p.D560H|GUCY1A3_uc003iox.2_Missense_Mutation_p.D561H|GUCY1A3_uc003ioz.2_Missense_Mutation_p.D326H|GUCY1A3_uc003ioy.2_Missense_Mutation_p.D561H|GUCY1A3_uc010iqe.2_Missense_Mutation_p.D326H|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.D561H	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	561	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		GGAGCTCTCTGATGAAGTTAT	0.438		NA											18	70					0	0	0	0
NPY5R	4889	broad.mit.edu	37	4	164272702	164272702	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr4:164272702G>T	uc003iqn.2	+	4	1459	c.1277G>T	c.(1276-1278)GGG>GTG	p.G426V		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	426	Helical; Name=7; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				ATTCTATATGGGTTTCTTAAT	0.333		NA											24	131					1.11e-09	1.21e-09	1	0
IRX1	79192	broad.mit.edu	37	5	3599879	3599879	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:3599879G>A	uc003jde.2	+	2	869	c.817G>A	c.(817-819)GAC>AAC	p.D273N		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	273						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						GGCAGCAGCCGACGTTCTCAA	0.726		NA											8	8					0	0	0	0
NPR3	4883	broad.mit.edu	37	5	32783030	32783030	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:32783030G>A	uc003jhv.2	+	6	1540	c.1322G>A	c.(1321-1323)CGT>CAT	p.R441H	NPR3_uc010iuo.2_Missense_Mutation_p.R225H|NPR3_uc011cnz.1_Missense_Mutation_p.R225H|NPR3_uc003jhu.2_Missense_Mutation_p.R441H	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	441	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	AAAGAAGGTCGTTTTGAAATG	0.398		NA											9	25					0	0	0	0
SPEF2	79925	broad.mit.edu	37	5	35705876	35705876	+	Silent	SNP	T	T	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:35705876T>C	uc003jjo.2	+	18	2742	c.2631T>C	c.(2629-2631)ATT>ATC	p.I877I	SPEF2_uc003jjq.3_Silent_p.I872I|SPEF2_uc003jjp.1_Silent_p.I363I	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	877	Potential.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TAAAAGAAATTCTTACGACTG	0.279		NA											3	73					0	0	0	0
ESM1	11082	broad.mit.edu	37	5	54275189	54275189	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:54275189C>T	uc003jpk.2	-	3	595	c.526G>A	c.(526-528)GTA>ATA	p.V176I	ESM1_uc010ivt.2_Missense_Mutation_p.V126I	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	176					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			TTCCTCATTACGGGAGACCCG	0.438		NA											35	196					0	0	0	0
MAN2A1	4124	broad.mit.edu	37	5	109152986	109152986	+	Silent	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:109152986C>G	uc003kou.1	+	13	2919	c.1956C>G	c.(1954-1956)GTC>GTG	p.V652V		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	652	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		ACCTTGTGGTCTATAATCCTT	0.338		NA											24	179					0	0	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579531	140579531	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:140579531C>T	uc003liy.2	+	1	184	c.184C>T	c.(184-186)CGG>TGG	p.R62W	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	62	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTGTCCTCACGGGGGGCTCG	0.507		NA											7	185					0	0	0	0
PCDH12	51294	broad.mit.edu	37	5	141336463	141336463	+	Silent	SNP	G	G	A	rs148884293	by1000genomes	TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:141336463G>A	uc003llx.2	-	1	2165	c.954C>T	c.(952-954)TAC>TAT	p.Y318Y		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	318	Extracellular (Potential).|Cadherin 3.				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCCACCTCGTAGGCAGGGT	0.517		NA											16	98					0	0	0	0
ANXA6	309	broad.mit.edu	37	5	150514043	150514043	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:150514043C>A	uc003ltl.1	-	8	643	c.491G>T	c.(490-492)GGA>GTA	p.G164V	ANXA6_uc011dcp.1_Missense_Mutation_p.G132V|ANXA6_uc003ltm.1_Missense_Mutation_p.G164V|ANXA6_uc003ltn.1_Intron|ANXA6_uc003lto.1_Intron	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	164						melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTCCCTGGTTCCCTGGGCAGA	0.542		NA											5	213					0.00116845	0.00121925	1	0
ODZ2	57451	broad.mit.edu	37	5	167645855	167645855	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:167645855C>G	uc010jjd.2	+	23	4932	c.4932C>G	c.(4930-4932)GAC>GAG	p.D1644E	ODZ2_uc003lzr.3_Missense_Mutation_p.D1414E|ODZ2_uc003lzt.3_Missense_Mutation_p.D1017E|ODZ2_uc010jje.2_Missense_Mutation_p.D908E	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCATGCCTGACAACCAGATCA	0.522		NA											27	243					0	0	0	0
FGFR4	2264	broad.mit.edu	37	5	176524631	176524631	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr5:176524631C>T	uc003mfl.2	+	18	2530	c.2363C>T	c.(2362-2364)CCA>CTA	p.P788L	FGFR4_uc003mfm.2_Missense_Mutation_p.P788L|FGFR4_uc011dfu.1_Missense_Mutation_p.P720L|FGFR4_uc003mfo.2_Missense_Mutation_p.P748L	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	788	Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	GACCCCCTGCCATTGGGATCC	0.642		NA								TSP Lung(9;0.080)			17	82					0	0	0	0
RREB1	6239	broad.mit.edu	37	6	7229784	7229784	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:7229784C>T	uc003mxc.2	+	10	1842	c.1452C>T	c.(1450-1452)ATC>ATT	p.I484I	RREB1_uc003mxb.2_Silent_p.I484I|RREB1_uc010jnx.2_Silent_p.I484I	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	484	Pro-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CCCCTCAGATCAGTCTTCCGC	0.617		NA											11	474					0	0	0	0
GCNT2	2651	broad.mit.edu	37	6	10621646	10621646	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:10621646G>A	uc010joo.2	+	4	1539	c.988G>A	c.(988-990)GAC>AAC	p.D330N	GCNT2_uc010jol.2_Missense_Mutation_p.D44N|GCNT2_uc010jom.2_RNA|GCNT2_uc010jop.2_RNA|GCNT2_uc003mza.2_RNA|GCNT2_uc003mzc.3_Missense_Mutation_p.D329N|GCNT2_uc003mzd.2_Missense_Mutation_p.D328N|GCNT2_uc003mze.2_Missense_Mutation_p.D330N	NM_145649	NP_663624	Q8N0V5	GNT2A_HUMAN	glucosaminyl (N-acetyl) transferase 2,	330	Lumenal (Potential).					Golgi membrane|integral to membrane	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)	2	Ovarian(93;0.107)|Breast(50;0.148)	all_hematologic(90;0.107)		KIRC - Kidney renal clear cell carcinoma(1;0.099)|Kidney(1;0.119)		AAAGTGGAGTGACATGGAAGA	0.507		NA											6	48					0	0	0	0
KIF13A	63971	broad.mit.edu	37	6	17764821	17764821	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:17764821C>T	uc003ncg.3	-	39	5043	c.4938G>A	c.(4936-4938)CCG>CCA	p.P1646P	KIF13A_uc003ncf.2_Silent_p.P1598P|KIF13A_uc003nch.3_Silent_p.P1611P|KIF13A_uc003nci.3_Silent_p.P1598P|KIF13A_uc003nce.1_Silent_p.P197P	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1646					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TGTTTGAGGACGGCCTGAAAT	0.507		NA											10	72					0	0	0	0
KIF13A	63971	broad.mit.edu	37	6	17797042	17797042	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:17797042C>A	uc003ncg.3	-	23	2905	c.2800G>T	c.(2800-2802)GTG>TTG	p.V934L	KIF13A_uc003ncf.2_Missense_Mutation_p.V934L|KIF13A_uc003nch.3_Missense_Mutation_p.V934L|KIF13A_uc003nci.3_Missense_Mutation_p.V934L	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	934					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			GTTACATTCACCACATAGTCC	0.423		NA											12	66					0.00010058	0.000106301	1	0
HIST1H3I	8354	broad.mit.edu	37	6	27839826	27839826	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:27839826C>A	uc003njy.2	-	1	274	c.268G>T	c.(268-270)GTG>TTG	p.V90L		NM_003533	NP_003524	P68431	H31_HUMAN	histone cluster 1, H3i	90					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						AGCGCCATCACCGCCGAGCTC	0.567		NA											9	189					1.13e-05	1.2e-05	1	0
ZNF165	7718	broad.mit.edu	37	6	28056699	28056699	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:28056699G>C	uc003nkg.2	+	5	1993	c.909G>C	c.(907-909)TGG>TGC	p.W303C	ZNF165_uc003nkh.2_Missense_Mutation_p.W303C|ZNF165_uc003nki.3_Missense_Mutation_p.W303C|ZSCAN12P1_uc003nkj.3_5'Flank	NM_003447	NP_003438	P49910	ZN165_HUMAN	zinc finger protein 165	303	C2H2-type 1; degenerate.				viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCTTCAAATGGAACTCAGATT	0.363		NA											22	44					0	0	0	0
CUL7	9820	broad.mit.edu	37	6	43006428	43006428	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:43006428C>T	uc003otq.2	-	24	4746	c.4443G>A	c.(4441-4443)GCG>GCA	p.A1481A	CUL7_uc010jyg.2_Silent_p.A760A|CUL7_uc011dvb.1_Silent_p.A1565A|CUL7_uc010jyh.2_Silent_p.A474A|KLC4_uc003otr.1_5'Flank	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1481					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CCACAGAGACCGCCTTCAGAG	0.577		NA											19	149					0	0	0	0
GTPBP2	54676	broad.mit.edu	37	6	43590532	43590532	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:43590532G>A	uc003ovs.2	-	10	1342	c.1305C>T	c.(1303-1305)TGC>TGT	p.C435C	GTPBP2_uc010jyv.2_Silent_p.C347C|GTPBP2_uc003ovt.1_Silent_p.C435C	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	435							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			CCCCCTCACGGCAAATCCCAC	0.597		NA											3	46					0	0	0	0
TDRD6	221400	broad.mit.edu	37	6	46657374	46657374	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:46657374G>A	uc003oyj.2	+	1	1509	c.1509G>A	c.(1507-1509)TGG>TGA	p.W503*	TDRD6_uc010jze.2_Nonsense_Mutation_p.W497*	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	503					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			CTGAGTTTTGGATTAGGTTGA	0.408		NA											24	181					0	0	0	0
MAP3K7	6885	broad.mit.edu	37	6	91257806	91257806	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:91257806C>T	uc003pnz.1	-	10	1202	c.1040G>A	c.(1039-1041)CGC>CAC	p.R347H	MAP3K7_uc003poa.1_Missense_Mutation_p.R347H|MAP3K7_uc003pob.1_Missense_Mutation_p.R347H|MAP3K7_uc003poc.1_Missense_Mutation_p.R347H	NM_145331	NP_663304	O43318	M3K7_HUMAN	mitogen-activated protein kinase kinase kinase 7	347					activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|histone H3 acetylation|I-kappaB phosphorylation|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytosol|endosome membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)	6		all_cancers(76;6.4e-08)|Acute lymphoblastic leukemia(125;1.43e-09)|Prostate(29;9.32e-09)|all_hematologic(105;3.69e-06)|all_epithelial(107;0.000187)|Ovarian(999;0.0164)		OV - Ovarian serous cystadenocarcinoma(136;2.05e-11)|all cancers(137;3.25e-11)|GBM - Glioblastoma multiforme(226;0.0416)|BRCA - Breast invasive adenocarcinoma(108;0.0429)		TGATTCTAAGCGCTTAATAGT	0.343		NA											5	84					0	0	0	0
MANEA	79694	broad.mit.edu	37	6	96054094	96054094	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:96054094C>G	uc003poo.1	+	5	1342	c.1202C>G	c.(1201-1203)TCT>TGT	p.S401C		NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	401	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		TCTATCACCTCTTTTAATGAG	0.428		NA											10	104					0	0	0	0
AIM1	202	broad.mit.edu	37	6	106973015	106973015	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:106973015G>C	uc003prh.2	+	3	3516	c.3029G>C	c.(3028-3030)AGA>ACA	p.R1010T		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1010							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CAGACACTTAGAGGAAGTGTC	0.373		NA											7	169					0	0	0	0
SOBP	55084	broad.mit.edu	37	6	107955074	107955074	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:107955074C>T	uc003prx.2	+	6	1530	c.1026C>T	c.(1024-1026)GTC>GTT	p.V342V		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	342							metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		ACTGCTCTGTCACTAAAATCC	0.642		NA											22	123					0	0	0	0
UTRN	7402	broad.mit.edu	37	6	145118996	145118996	+	Missense_Mutation	SNP	A	A	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:145118996A>C	uc003qkt.2	+	63	9207	c.9115A>C	c.(9115-9117)ATA>CTA	p.I3039L		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	3039	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GAAAGAGTTTATAGATTGGAT	0.378		NA											14	89					0	0	0	0
RMND1	55005	broad.mit.edu	37	6	151766520	151766520	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:151766520G>A	uc003qoi.2	-	2	607	c.427C>T	c.(427-429)CAG>TAG	p.Q143*	RMND1_uc011eeq.1_5'Flank|RMND1_uc003qoj.2_Nonsense_Mutation_p.Q143*|RMND1_uc011eer.1_Nonsense_Mutation_p.Q143*	NM_017909	NP_060379	Q9NWS8	RMND1_HUMAN	required for meiotic nuclear division 1 homolog	143											0		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.146)	OV - Ovarian serous cystadenocarcinoma(155;6.8e-11)		CTCTTCACCTGTGGGAAGTCT	0.438		NA											54	114					0	0	0	0
RBM16	22828	broad.mit.edu	37	6	155131214	155131214	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:155131214C>G	uc003qqa.2	+	13	1524	c.1292C>G	c.(1291-1293)TCA>TGA	p.S431*	RBM16_uc011efj.1_Nonsense_Mutation_p.S497*|RBM16_uc011efk.1_Nonsense_Mutation_p.S476*|RBM16_uc003qpz.2_Nonsense_Mutation_p.S431*|RBM16_uc010kji.2_Nonsense_Mutation_p.S452*	NM_014892	NP_055707	Q9UPN6	SCAF8_HUMAN	RNA-binding motif protein 16	431	Arg-rich.				mRNA processing|RNA splicing	nuclear matrix|spliceosomal complex	nucleotide binding|RNA binding|RNA polymerase core enzyme binding				0		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;2.33e-15)|BRCA - Breast invasive adenocarcinoma(81;0.00524)		AGAAAGCGATCACGCTCCCGC	0.413		NA											34	210					0	0	0	0
PDE10A	10846	broad.mit.edu	37	6	165746557	165746557	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:165746557G>A	uc003qun.2	-	23	2538	c.2297C>T	c.(2296-2298)TCA>TTA	p.S766L	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.S696L|PDE10A_uc003quo.2_Missense_Mutation_p.S776L	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	766					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GGATGGGGATGAAATCCAGGT	0.502		NA											30	185					0	0	0	0
BRP44L	51660	broad.mit.edu	37	6	166796324	166796324	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr6:166796324C>T	uc011egn.1	-	1	163	c.41G>A	c.(40-42)CGA>CAA	p.R14Q	BRP44L_uc003qva.2_RNA|BRP44L_uc010kkj.1_Missense_Mutation_p.R14Q	NM_016098	NP_057182	Q9Y5U8	BR44L_HUMAN	brain protein 44-like	14				R -> Q (in Ref. 2; AAD34124).		mitochondrion				central_nervous_system(1)	1		Breast(66;0.000148)|Prostate(117;0.109)|Ovarian(120;0.199)		OV - Ovarian serous cystadenocarcinoma(33;1.8e-19)|BRCA - Breast invasive adenocarcinoma(81;4.68e-06)|GBM - Glioblastoma multiforme(31;0.000122)		ATCCTTGCTTCGGACATAGTC	0.687		NA											3	26					0	0	0	0
ZNF12	7559	broad.mit.edu	37	7	6732045	6732045	+	Silent	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:6732045G>C	uc003sqt.1	-	5	1082	c.528C>G	c.(526-528)CTC>CTG	p.L176L	ZNF12_uc011jxa.1_Silent_p.L14L|ZNF12_uc003sqs.1_Silent_p.L138L	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	176					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		GCTTAATATGGAGGAGTGATT	0.343		NA											12	90					0	0	0	0
MACC1	346389	broad.mit.edu	37	7	20198241	20198241	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:20198241G>A	uc003sus.3	-	5	2052	c.1743C>T	c.(1741-1743)CTC>CTT	p.L581L	MACC1_uc010kug.2_Silent_p.L581L	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	581	SH3.				positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						TACCTTCCCCGAGGAGAGCTA	0.418		NA											13	301					0	0	0	0
SP4	6671	broad.mit.edu	37	7	21550789	21550789	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:21550789G>A	uc003sva.2	+	6	2438	c.2257G>A	c.(2257-2259)GAG>AAG	p.E753K	SP4_uc003svb.2_Missense_Mutation_p.E440K	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	753					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						ATCTGTTACAGAGGTGCTTGG	0.448		NA											22	98					0	0	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94881081	94881081	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:94881081G>C	uc003unp.2	+	10	2620	c.2338G>C	c.(2338-2340)GAT>CAT	p.D780H	PPP1R9A_uc010lfj.2_Missense_Mutation_p.D802H|PPP1R9A_uc011kif.1_Missense_Mutation_p.D780H|PPP1R9A_uc003unq.2_Missense_Mutation_p.D780H|PPP1R9A_uc011kig.1_Missense_Mutation_p.D780H	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	780	Interacts with TGN38 (By similarity).|Potential.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AAGAGAGCTTGATTTCATCAA	0.343		NA								HNSCC(28;0.073)			7	58					0	0	0	0
BCAP29	55973	broad.mit.edu	37	7	107236385	107236385	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:107236385C>G	uc003vej.2	+	5	757	c.418C>G	c.(418-420)CAA>GAA	p.Q140E	BCAP29_uc011kly.1_Missense_Mutation_p.Q46E|BCAP29_uc011klz.1_Missense_Mutation_p.Q140E|BCAP29_uc011kma.1_Missense_Mutation_p.Q140E	NM_018844	NP_061332	Q9UHQ4	BAP29_HUMAN	B-cell receptor-associated protein BAP29 isoform	140	Cytoplasmic (Potential).				apoptosis|intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|integral to membrane				large_intestine(1)|ovary(1)	2						ACTTAAAACTCAAGCAGAAAA	0.299		NA											16	108					0	0	0	0
GPR85	54329	broad.mit.edu	37	7	112724579	112724579	+	Silent	SNP	A	A	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:112724579A>G	uc010ljv.2	-	2	715	c.198T>C	c.(196-198)GAT>GAC	p.D66D	GPR85_uc003vgp.1_Silent_p.D66D|GPR85_uc003vgq.2_Silent_p.D66D|GPR85_uc010ljw.1_Silent_p.D66D	NM_001146266	NP_001139738	P60893	GPR85_HUMAN	G protein-coupled receptor 85	66	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)	2						ATCTGAGGATATCTGAACAGC	0.433		NA											17	126					0	0	0	0
ASZ1	136991	broad.mit.edu	37	7	117067495	117067495	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:117067495C>T	uc003vjb.2	-	1	83	c.20G>A	c.(19-21)CGA>CAA	p.R7Q	ASZ1_uc011kno.1_Missense_Mutation_p.R7Q|ASZ1_uc011knp.1_5'UTR	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	7					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TGGCAGGCCTCGCAGCGCGCT	0.697		NA									OREG0003439	type=REGULATORY REGION|Gene=ASZ1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	3	10					0	0	0	0
GCC1	79571	broad.mit.edu	37	7	127222112	127222112	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:127222112G>A	uc003vma.2	-	2	2702	c.2284C>T	c.(2284-2286)CGA>TGA	p.R762*		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	762	Potential.|GRIP.					Golgi membrane|plasma membrane	protein binding			ovary(2)	2						GTTGGGAGTCGCATTATCACT	0.517		NA											32	131					0	0	0	0
CLCN1	1180	broad.mit.edu	37	7	143020477	143020477	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:143020477G>C	uc003wcr.1	+	6	859	c.772G>C	c.(772-774)GAG>CAG	p.E258Q	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_Intron|CLCN1_uc010loy.1_Intron	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	258					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CGGGGTATATGAGGTAAGGTT	0.607		NA											5	86					0	0	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439815	150439815	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr7:150439815G>C	uc003whr.1	+	3	940	c.588G>C	c.(586-588)CAG>CAC	p.Q196H	GIMAP5_uc010lpu.2_Missense_Mutation_p.Q54H	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	196	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGGAGGAGCAGAGGCAGCAGC	0.582		NA											26	66					0	0	0	0
DLGAP2	9228	broad.mit.edu	37	8	1497551	1497551	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:1497551C>T	uc003wpl.2	+	2	789	c.692C>T	c.(691-693)ACG>ATG	p.T231M	DLGAP2_uc003wpm.2_Missense_Mutation_p.T231M	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	310					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		ACCTATCGGACGCCCAGCGTG	0.687		NA											13	97					0	0	0	0
RP1	6101	broad.mit.edu	37	8	55541429	55541429	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:55541429G>A	uc003xsd.1	+	4	5135	c.4987G>A	c.(4987-4989)GAA>AAA	p.E1663K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1663					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TAATTCTGTGGAATTTCAGTG	0.388		NA											74	225					0	0	0	0
LRRCC1	85444	broad.mit.edu	37	8	86037161	86037161	+	Missense_Mutation	SNP	A	A	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:86037161A>C	uc003ycw.2	+	8	1413	c.1259A>C	c.(1258-1260)GAC>GCC	p.D420A	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Missense_Mutation_p.D121A|LRRCC1_uc003ycx.2_Missense_Mutation_p.D327A|LRRCC1_uc003ycy.2_Missense_Mutation_p.D400A	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	420					cell division|mitosis	centriole|nucleus					0						CACTCAGAAGACAACACTTAC	0.299		NA											36	89					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113323263	113323263	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:113323263C>A	uc003ynu.2	-	50	7988	c.7829G>T	c.(7828-7830)TGC>TTC	p.C2610F	CSMD3_uc003yns.2_Missense_Mutation_p.C1812F|CSMD3_uc003ynt.2_Missense_Mutation_p.C2570F|CSMD3_uc011lhx.1_Missense_Mutation_p.C2506F|CSMD3_uc003ynw.1_Missense_Mutation_p.C321F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2610	Extracellular (Potential).|Sushi 14.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGACTTTCTGCACACAGCACT	0.463		NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			19	141					5.39e-06	5.77e-06	1	0
ENPP2	5168	broad.mit.edu	37	8	120602836	120602836	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:120602836G>C	uc003yot.1	-	13	1202	c.1116C>G	c.(1114-1116)TTC>TTG	p.F372L	ENPP2_uc003yor.1_Missense_Mutation_p.F11L|ENPP2_uc003yos.1_Missense_Mutation_p.F424L|ENPP2_uc010mdd.1_Missense_Mutation_p.F372L	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	372					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			AATTACTCAAGAACTCAGTTC	0.353		NA											3	86					0	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139163666	139163666	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:139163666C>G	uc003yuy.2	-	13	3223	c.3052G>C	c.(3052-3054)GAG>CAG	p.E1018Q	FAM135B_uc003yux.2_Missense_Mutation_p.E919Q|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E580Q|FAM135B_uc003yvb.2_Missense_Mutation_p.E580Q	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1018										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTAAAGGTCTCTGCAGAAGTC	0.522		NA								HNSCC(54;0.14)			31	51					0	0	0	0
KCNK9	51305	broad.mit.edu	37	8	140631107	140631107	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:140631107G>A	uc003yvf.1	-	2	583	c.519C>T	c.(517-519)ATC>ATT	p.I173I	KCNK9_uc003yvg.1_Silent_p.I173I|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	173	Helical; (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CGGCCGCCCCGATGCACAGCG	0.562		NA											12	69					0	0	0	0
TYRP1	7306	broad.mit.edu	37	9	12704633	12704633	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:12704633G>T	uc003zkv.3	+	6	1367	c.1189G>T	c.(1189-1191)GAT>TAT	p.D397Y		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	397	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		GTCTCCAAATGATCCTATTTT	0.443		NA							Oculocutaneous_Albinism				24	169					1.43e-11	1.58e-11	1	0
IARS	3376	broad.mit.edu	37	9	95050073	95050073	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:95050073C>T	uc004art.1	-	4	653	c.396G>A	c.(394-396)AAG>AAA	p.K132K	IARS_uc004ars.1_5'UTR|IARS_uc004aru.3_Silent_p.K132K|IARS_uc010mqr.2_Silent_p.K22K|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	132					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	CCCAACATACCTTCCACTCAG	0.383		NA											31	176					0	0	0	0
IPPK	64768	broad.mit.edu	37	9	95405069	95405069	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:95405069C>T	uc004asl.1	-	7	805	c.528G>A	c.(526-528)CAG>CAA	p.Q176Q		NM_022755	NP_073592	Q9H8X2	IPPK_HUMAN	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	176					inositol or phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol pentakisphosphate 2-kinase activity			ovary(2)	2						ATTTGCTGATCTGCTTCCACT	0.547		NA											8	68					0	0	0	0
TBC1D2	55357	broad.mit.edu	37	9	100971416	100971416	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:100971416C>T	uc011lvb.1	-	9	1864	c.1684G>A	c.(1684-1686)GAG>AAG	p.E562K	TBC1D2_uc004ayp.2_Missense_Mutation_p.E102K|TBC1D2_uc004ayq.2_Missense_Mutation_p.E562K|TBC1D2_uc004ayr.2_Missense_Mutation_p.E344K|TBC1D2_uc004ayo.3_Missense_Mutation_p.E562K	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	562						cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		AAGCCGTACTCATCATACTTA	0.478		NA											63	342					0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113220760	113220760	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:113220760G>A	uc010mtz.2	-	20	3904	c.3567C>T	c.(3565-3567)ATC>ATT	p.I1189I	SVEP1_uc010mua.1_Silent_p.I1189I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1189					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCTGACTGCTGATTTCATGCC	0.403		NA											6	43					0	0	0	0
ZNF483	158399	broad.mit.edu	37	9	114304895	114304895	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:114304895C>T	uc004bff.2	+	6	1904	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	560	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						GAAAATCCTTCAGTCATAGCT	0.408		NA											16	140					0	0	0	0
ZNF483	158399	broad.mit.edu	37	9	114304990	114304990	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:114304990C>T	uc004bff.2	+	6	1999	c.1775C>T	c.(1774-1776)TCA>TTA	p.S592L	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	592	C2H2-type 6.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						AGGCAGAATTCATGCCTTACC	0.398		NA											13	104					0	0	0	0
SNX30	401548	broad.mit.edu	37	9	115626607	115626607	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:115626607G>A	uc004bgj.3	+	8	1330	c.1182G>A	c.(1180-1182)CAG>CAA	p.Q394Q	SNX30_uc004bgi.3_Silent_p.Q76Q	NM_001012994	NP_001013012	Q5VWJ9	SNX30_HUMAN	sorting nexin family member 30	394					cell communication|protein transport	cytoplasm	phosphatidylinositol binding				0						AGAGGTGGCAGAACAACAAGA	0.512		NA											16	77					0	0	0	0
RALGPS1	9649	broad.mit.edu	37	9	129975312	129975312	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:129975312G>A	uc004bqo.1	+	17	1803	c.1536G>A	c.(1534-1536)CTG>CTA	p.L512L	RALGPS1_uc011mac.1_Silent_p.L470L|RALGPS1_uc004bqq.3_Silent_p.L462L	NM_014636	NP_055451	Q5JS13	RGPS1_HUMAN	Ral GEF with PH domain and SH3 binding motif 1	512	Required for stimulation of nucleotide exchange by RALA.|PH.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity			ovary(1)	1						TCTTCCAGCTGAACAACCCTG	0.542		NA											22	51					0	0	0	0
SARDH	1757	broad.mit.edu	37	9	136578232	136578232	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:136578232C>G	uc004cep.3	-	9	1299	c.1165G>C	c.(1165-1167)GAC>CAC	p.D389H	SARDH_uc004ceo.2_Missense_Mutation_p.D389H|SARDH_uc011mdn.1_Missense_Mutation_p.D389H|SARDH_uc011mdo.1_Missense_Mutation_p.D221H	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	389					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GGCTTGTGGTCGGGCGTGAAG	0.607		NA											6	23					0	0	0	0
BRD3	8019	broad.mit.edu	37	9	136906945	136906945	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:136906945C>T	uc004cew.2	-	8	1532	c.1344G>A	c.(1342-1344)TCG>TCA	p.S448S	BRD3_uc004cex.2_Silent_p.S448S	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	448						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		TGCCTGAGTCCGAAGAGCTCT	0.701		NA	T	NUT|C15orf55	lethal midline carcinoma of young people								11	39					0	0	0	0
SNAPC4	6621	broad.mit.edu	37	9	139273401	139273401	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr9:139273401C>T	uc004chh.2	-	21	2887	c.2878G>A	c.(2878-2880)GCA>ACA	p.A960T		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	960	Pro-rich.				snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		GGTTTGGCTGCCGCGGGGGCC	0.657		NA											5	13					0	0	0	0
FANCB	2187	broad.mit.edu	37	X	14883405	14883405	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:14883405G>C	uc004cwg.1	-	3	496	c.228C>G	c.(226-228)ATC>ATG	p.I76M	FANCB_uc004cwh.1_Missense_Mutation_p.I76M	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	76					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					TGCAACACATGATTTTTAAAT	0.299		NA						Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				5	101					0	0	0	0
RGN	9104	broad.mit.edu	37	X	46951163	46951163	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:46951163G>C	uc004dgz.1	+	6	1618	c.649G>C	c.(649-651)GCC>CCC	p.A217P	RGN_uc004dha.1_Missense_Mutation_p.A217P|RGN_uc010nho.1_Missense_Mutation_p.A164P|RGN_uc010nhp.1_Missense_Mutation_p.A145P	NM_152869	NP_690608	Q15493	RGN_HUMAN	regucalcin	217					cellular calcium ion homeostasis|positive regulation of ATPase activity|regulation of calcium-mediated signaling	cytoplasm|nucleus	calcium ion binding|enzyme regulator activity|gluconolactonase activity|zinc ion binding				0						GCTCTGGGTGGCCTGTTACAA	0.458		NA											5	122					0	0	0	0
LPAR4	2846	broad.mit.edu	37	X	78010407	78010407	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:78010407C>G	uc010nme.2	+	2	446	c.41C>G	c.(40-42)TCA>TGA	p.S14*		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	14	Extracellular (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TTCCAAGATTCAAATTCAAGC	0.448		NA											27	125					0	0	0	0
DACH2	117154	broad.mit.edu	37	X	86068141	86068141	+	Silent	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:86068141G>A	uc004eew.2	+	9	1568	c.1398G>A	c.(1396-1398)CTG>CTA	p.L466L	DACH2_uc004eex.2_Silent_p.L453L|DACH2_uc010nmq.2_Silent_p.L332L|DACH2_uc011mra.1_Silent_p.L299L|DACH2_uc010nmr.2_Silent_p.L247L|DACH2_uc004eey.2_Silent_p.L159L|DACH2_uc004eez.2_Silent_p.L149L	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	466	Potential.|DACHbox-C.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						AGGGTCTGCTGAAAGTTGCTT	0.363		NA											4	22					0	0	0	0
PRPS1	5631	broad.mit.edu	37	X	106882553	106882553	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:106882553G>C	uc004ene.3	+	2	356	c.151G>C	c.(151-153)GAG>CAG	p.E51Q	PRPS1_uc010npg.2_Missense_Mutation_p.E51Q|PRPS1_uc011msj.1_Intron	NM_002764	NP_002755	P60891	PRPS1_HUMAN	phosphoribosyl pyrophosphate synthetase 1	51					5-phosphoribose 1-diphosphate biosynthetic process|hypoxanthine biosynthetic process|nervous system development|nucleoside metabolic process|purine nucleotide biosynthetic process|pyrimidine nucleotide biosynthetic process|ribonucleoside monophosphate biosynthetic process|urate biosynthetic process	cytosol	ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			breast(3)|large_intestine(1)	4						TGTACGTGGAGAGGATGTCTA	0.348		NA											56	289					0	0	0	0
KIAA1210	57481	broad.mit.edu	37	X	118284511	118284511	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:118284511G>A	uc004era.3	-	1	32	c.32C>T	c.(31-33)TCT>TTT	p.S11F		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	11										ovary(4)|skin(1)	5						GTGAAAGGCAGAGAAGCCTCG	0.642		NA											21	94					0	0	0	0
ODZ1	10178	broad.mit.edu	37	X	123517613	123517613	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:123517613C>T	uc004euj.2	-	29	7211	c.7147G>A	c.(7147-7149)GGC>AGC	p.G2383S	ODZ1_uc011muj.1_Missense_Mutation_p.G2389S|ODZ1_uc010nqy.2_Missense_Mutation_p.G2390S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2383	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GTCCATCTGCCAGCAACAACA	0.413		NA											63	131					0	0	0	0
GPC3	2719	broad.mit.edu	37	X	132730493	132730493	+	Silent	SNP	C	C	T			TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chrX:132730493C>T	uc004exe.1	-	7	1738	c.1548G>A	c.(1546-1548)GTG>GTA	p.V516V	GPC3_uc004exd.1_Silent_p.V388V|GPC3_uc010nrn.1_Silent_p.V539V|GPC3_uc011mvh.1_Silent_p.V500V|GPC3_uc010nro.1_Silent_p.V462V	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	516						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					GCTGATTCTTCACTTTTATCA	0.418		NA	T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				15	253					0	0	0	0
RP1L1	94137	broad.mit.edu	37	8	10464991	10465038	+	In_Frame_Del	DEL	TGGGCCTCCCCTTCTGCCTCTGGGGCCTCTATACCTTCTGACTCTGGC	TGGGCCTCCCCTTCTGCCTCTGGGGCCTCTATACCTTCTGACTCTGGC	-	rs75797924	by1000genomes	TCGA-CN-5374-01A-01D-1434-08	TCGA-CN-5374-10A-01D-1434-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	28d5a97b-3f3d-4595-9034-8491999fcf40	fc1114cb-d2aa-40d5-b507-ff3d97d7eab3	g.chr8:10464991_10465038delTGGGCCTCCCCTTCTGCCTCTGGGGCCTCTATACCTTCTGACTCTGGC	uc003wtc.2	-	4	6799_6846	c.6570_6617delGCCAGAGTCAGAAGGTATAGAGGCCCCAGAGGCAGAAGGGGAGGCCCA	c.(6568-6618)CAGCCAGAGTCAGAAGGTATAGAGGCCCCAGAGGCAGAAGGGGAGGCCCAA>CAA	p.2190_2206QPESEGIEAPEAEGEAQ>Q		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	2190_2206					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TAACTCTGGTTGGGCCTCCCCTTCTGCCTCTGGGGCCTCTATACCTTCTGACTCTGGCTGGGCCTCCC	0.629		NA											27	445	---	---	---	---	NA	NA	NA	NA
