Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
CLCNKA	1187	broad.mit.edu	37	1	16357081	16357081	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:16357081G>T	uc001axu.2	+	15	1614	c.1534G>T	c.(1534-1536)GCA>TCA	p.A512S	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.A512S|CLCNKA_uc010obw.1_Missense_Mutation_p.A469S|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_Missense_Mutation_p.A159S|CLCNKA_uc010oby.1_Missense_Mutation_p.A248S	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	512					excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CAACGCCATTGCACAGAGCTG	0.612		NA											27	19					4.6e-10	6.93e-10	1	0
NBPF1	55672	broad.mit.edu	37	1	16890588	16890588	+	Silent	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:16890588T>A	uc009vos.1	-	31	4383	c.3495A>T	c.(3493-3495)CTA>CTT	p.L1165L	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1165	NBPF 8.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		ATGAGTCAGGTAGTTCAAAGT	0.463		NA											47	673					0	0	0	0
MAP3K6	9064	broad.mit.edu	37	1	27684364	27684364	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:27684364C>A	uc001bny.1	-	22	3168	c.2919G>T	c.(2917-2919)GTG>GTT	p.V973V	MAP3K6_uc009vsw.1_Silent_p.V965V	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	973					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GCTCCTCGGGCACCCTGGGCA	0.657		NA									OREG0013282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	2					0.00116845	0.00154758	1	0
BAI2	576	broad.mit.edu	37	1	32221746	32221746	+	Missense_Mutation	SNP	G	G	C	rs149675901		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:32221746G>C	uc001btn.2	-	4	1046	c.692C>G	c.(691-693)GCC>GGC	p.A231G	BAI2_uc010ogp.1_Missense_Mutation_p.A219G|BAI2_uc010ogq.1_Missense_Mutation_p.A231G|BAI2_uc001bto.2_Missense_Mutation_p.A231G|BAI2_uc001btq.1_Missense_Mutation_p.A219G|BAI2_uc010ogr.1_Missense_Mutation_p.A219G	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	231	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		GGTGGAGCCGGCCCCCGCCTC	0.711		NA											5	41					0	0	0	0
DLGAP3	58512	broad.mit.edu	37	1	35333227	35333227	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:35333227G>T	uc001byc.2	-	8	2487	c.2487C>A	c.(2485-2487)ATC>ATA	p.I829I		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	829					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				TCTTCTCCAGGACTAGAAAGC	0.557		NA											67	23					2.73e-28	4.7e-28	1	0
OXCT2	64064	broad.mit.edu	37	1	40235514	40235514	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:40235514C>T	uc001ceb.1	-	1	1507	c.1414G>A	c.(1414-1416)GTG>ATG	p.V472M	BMP8B_uc001cdz.1_Intron|BMP8B_uc001cea.1_Intron|OXCT2_uc009vvu.1_Missense_Mutation_p.V466M	NM_022120	NP_071403	Q9BYC2	SCOT2_HUMAN	3-oxoacid CoA transferase 2 precursor	472					ketone body catabolic process	microtubule-based flagellum|mitochondrion	3-oxoacid CoA-transferase activity			pancreas(1)	1	all_cancers(7;5.56e-14)|all_lung(5;3.88e-17)|all_epithelial(6;3.78e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;1.92e-17)|all cancers(16;4.03e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)		Succinic acid(DB00139)	ACGTCAAACACGGCCTTCTCG	0.587		NA											83	44					0	0	0	0
RLF	6018	broad.mit.edu	37	1	40705148	40705148	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:40705148G>A	uc001cfc.3	+	8	4805	c.4774G>A	c.(4774-4776)GTT>ATT	p.V1592I	RLF_uc001cfd.3_Missense_Mutation_p.V1283I	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	1592					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			TGTTGTTTGCGTTAAGTACGG	0.428		NA											21	98					0	0	0	0
MOBKL2C	148932	broad.mit.edu	37	1	47078896	47078896	+	Missense_Mutation	SNP	T	T	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:47078896T>G	uc001cqf.3	-	2	329	c.98A>C	c.(97-99)AAG>ACG	p.K33T	MKNK1_uc010omf.1_Intron|MOBKL2C_uc001cqe.3_Missense_Mutation_p.K85T	NM_201403	NP_958805	Q70IA8	MOL2C_HUMAN	MOB1, Mps One Binder kinase activator-like 2C	33							metal ion binding			pancreas(1)	1	Acute lymphoblastic leukemia(166;0.155)					GGCCTGTGCCTTCTTGTACAG	0.637		NA											24	18					0	0	0	0
ZRANB2	9406	broad.mit.edu	37	1	71544178	71544178	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:71544178G>C	uc001dft.2	-	3	247	c.180C>G	c.(178-180)AGC>AGG	p.S60R	uc001dfu.1_5'Flank|ZRANB2_uc001dfs.2_Missense_Mutation_p.S60R	NM_203350	NP_976225	O95218	ZRAB2_HUMAN	zinc finger protein 265 isoform 1	60					mRNA processing|RNA splicing	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						ATAGGCCTCGGCTCTTTTCTG	0.378		NA											8	59					0	0	0	0
C1orf103	55791	broad.mit.edu	37	1	111490596	111490596	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:111490596C>T	uc001eaa.2	-	4	2551	c.2295G>A	c.(2293-2295)AAG>AAA	p.K765K	C1orf103_uc001dzz.2_Silent_p.K229K|C1orf103_uc001eab.2_Silent_p.K229K|C1orf103_uc001eac.1_Silent_p.K228K	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	765	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		TTTGGTGCATCTTCTTACGCA	0.348		NA											20	79					0	0	0	0
MAGI3	260425	broad.mit.edu	37	1	114193672	114193672	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:114193672G>T	uc001edk.2	+	14	2465	c.2284G>T	c.(2284-2286)GAG>TAG	p.E762*	MAGI3_uc001edh.3_Nonsense_Mutation_p.E787*|MAGI3_uc001edi.3_Nonsense_Mutation_p.E762*|MAGI3_uc010owm.1_Nonsense_Mutation_p.E787*|MAGI3_uc001edj.2_Nonsense_Mutation_p.E483*	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	787	Interaction with BAI1.|PDZ 4.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGAGCAGCTGAGAAAGATGG	0.418		NA											18	20					2.94e-08	4.29e-08	1	0
SYCP1	6847	broad.mit.edu	37	1	115537355	115537355	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:115537355T>A	uc001efr.2	+	31	2949	c.2740T>A	c.(2740-2742)TAT>AAT	p.Y914N	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.Y914N|SYCP1_uc009wgw.2_Missense_Mutation_p.Y889N	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	914					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAAAACACTGTATAGGAACAA	0.284		NA											22	7					0	0	0	0
SPAG17	200162	broad.mit.edu	37	1	118537063	118537063	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:118537063C>A	uc001ehk.2	-	35	5212	c.5144G>T	c.(5143-5145)CGG>CTG	p.R1715L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1715						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TGACCTTGACCGGAGATTAGG	0.423		NA											13	12					1.5e-05	2.08e-05	1	0
HMGCS2	3158	broad.mit.edu	37	1	120311418	120311418	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:120311418G>A	uc001eid.2	-	1	101	c.50C>T	c.(49-51)GCG>GTG	p.A17V	HMGCS2_uc010oxj.1_Missense_Mutation_p.A17V	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	17					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TTCCTGCACCGCTCTTGTCAG	0.517		NA											8	25					0	0	0	0
FCRL4	83417	broad.mit.edu	37	1	157551393	157551393	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:157551393T>A	uc001fqw.2	-	7	1313	c.1177A>T	c.(1177-1179)ACT>TCT	p.T393S	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	393	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				AGCCCTCCAGTGGCTCCCGCG	0.572		NA											33	18					0	0	0	0
FCRL1	115350	broad.mit.edu	37	1	157771764	157771764	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:157771764C>A	uc001frg.2	-	5	940	c.827G>T	c.(826-828)TGT>TTT	p.C276F	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.C276F|FCRL1_uc001fri.2_Missense_Mutation_p.C276F|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	276	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GTTGGCCTCACAGGAGTAGTT	0.557		NA											55	63					1.96e-22	3.33e-22	1	0
CD5L	922	broad.mit.edu	37	1	157803236	157803236	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:157803236T>C	uc001frk.3	-	5	928	c.785A>G	c.(784-786)AAG>AGG	p.K262R		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	262	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CCATACGCCCTTGTGCAGCAC	0.572		NA											89	91					0	0	0	0
CD1C	911	broad.mit.edu	37	1	158263029	158263029	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:158263029C>A	uc001fru.2	+	5	1209	c.917C>A	c.(916-918)GCC>GAC	p.A306D	CD1C_uc001frv.2_Intron	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	306	Helical; (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					AATTGGATTGCCTTGGTAGTG	0.398		NA											60	197					4.66e-34	8.1e-34	1	0
OR10T2	128360	broad.mit.edu	37	1	158368630	158368630	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:158368630C>G	uc010pih.1	-	1	627	c.627G>C	c.(625-627)ATG>ATC	p.M209I		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					GAAAAGGCACCATAATTACCA	0.458		NA											9	54					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158607983	158607983	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:158607983C>T	uc001fst.1	-	36	5228	c.5029G>A	c.(5029-5031)GGG>AGG	p.G1677R		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1677	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTGAAAGTCCCGCTGGAGAGC	0.413		NA											22	45					0	0	0	0
FCER1A	2205	broad.mit.edu	37	1	159277544	159277544	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:159277544G>T	uc001ftq.2	+	6	695	c.596G>T	c.(595-597)CGT>CTT	p.R199L		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	199	Extracellular (Potential).					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	ACAGCTCCGCGTGAGAAGTAC	0.413		NA											51	49					1.54e-34	2.69e-34	1	0
RXRG	6258	broad.mit.edu	37	1	165398110	165398110	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:165398110G>T	uc001gda.2	-	2	443	c.143C>A	c.(142-144)ACC>AAC	p.T48N		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	48	Modulating (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	ACTCACTGGGGTATCTGTGTA	0.612		NA											8	51					1.13e-05	1.58e-05	1	0
SFT2D2	375035	broad.mit.edu	37	1	168200757	168200757	+	Silent	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:168200757T>C	uc001gfi.3	+	2	132	c.69T>C	c.(67-69)GTT>GTC	p.V23V	TBX19_uc001gfj.3_Intron	NM_199344	NP_955376	O95562	SFT2B_HUMAN	SFT2 domain containing 2	23	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	integral to membrane				skin(1)	1	all_hematologic(923;0.215)					TTTAGGTTGTTGAGGCATCTT	0.348		NA											48	52					0	0	0	0
SELP	6403	broad.mit.edu	37	1	169586541	169586541	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:169586541G>T	uc001ggi.3	-	3	271	c.206C>A	c.(205-207)GCC>GAC	p.A69D	SELP_uc001ggh.2_5'UTR|SELP_uc009wvr.2_Missense_Mutation_p.A69D	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	69	Extracellular (Potential).|C-type lectin.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	ATTCTGGATGGCCACTAAGTC	0.408		NA											55	142					6.31e-27	1.08e-26	1	0
FMO4	2329	broad.mit.edu	37	1	171300851	171300851	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:171300851G>A	uc001gho.2	+	6	774	c.557G>A	c.(556-558)CGC>CAC	p.R186H		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	186					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CAGGGCAAACGCGTCTTGGTG	0.463		NA											25	153					0	0	0	0
RALGPS2	55103	broad.mit.edu	37	1	178871291	178871291	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:178871291G>A	uc001glz.2	+	18	1913	c.1575G>A	c.(1573-1575)ATG>ATA	p.M525I	RALGPS2_uc010pnb.1_Missense_Mutation_p.M499I	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	525	Required for stimulation of nucleotide exchange by RALA (By similarity).|PH.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						GGATGGTGATGATGGCTGATG	0.383		NA											10	86					0	0	0	0
CACNA1E	777	broad.mit.edu	37	1	181702849	181702849	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:181702849C>T	uc001gow.2	+	21	3390	c.3225C>T	c.(3223-3225)CCC>CCT	p.P1075P	CACNA1E_uc009wxs.2_Silent_p.P963P|CACNA1E_uc001gox.1_Silent_p.P301P|CACNA1E_uc009wxt.2_Silent_p.P301P	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1075	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCGCCATCCCCGACGTGGACC	0.652		NA											12	28					0	0	0	0
CRB1	23418	broad.mit.edu	37	1	197390857	197390857	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:197390857G>A	uc001gtz.2	+	6	2034	c.1899G>A	c.(1897-1899)ATG>ATA	p.M633I	CRB1_uc010poz.1_Missense_Mutation_p.M564I|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Missense_Mutation_p.M521I|CRB1_uc010ppb.1_Missense_Mutation_p.M633I|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.M114I|CRB1_uc001gub.1_Missense_Mutation_p.M282I	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	633	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCTATAATATGCCATCCACAC	0.403		NA											44	87					0	0	0	0
FAM58B	339521	broad.mit.edu	37	1	200183121	200183121	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:200183121C>A	uc009wzi.1	+	1	466	c.430C>A	c.(430-432)CAT>AAT	p.H144N		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	144					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CTCCTTCCAGCATCCACACAA	0.612		NA											25	35					9.86e-18	1.62e-17	1	0
ATP2B4	493	broad.mit.edu	37	1	203708793	203708793	+	Silent	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:203708793A>G	uc001gzw.2	+	21	4313	c.3429A>G	c.(3427-3429)CCA>CCG	p.P1143P	ATP2B4_uc001gzv.2_3'UTR|ATP2B4_uc001gzx.2_Silent_p.P210P|ATP2B4_uc009xar.2_3'UTR	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	1179	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AGGAGTTGCCACGAACACCAC	0.502		NA											23	51					0	0	0	0
KCNH1	3756	broad.mit.edu	37	1	211263942	211263942	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:211263942G>A	uc001hib.2	-	4	571	c.401C>T	c.(400-402)ACA>ATA	p.T134I	KCNH1_uc001hic.2_Missense_Mutation_p.T134I	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	134	PAC.|Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TTTGAAAGCTGTTATGTCACT	0.358		NA											18	24					0	0	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232577560	232577560	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:232577560G>A	uc001hvg.2	-	11	3650	c.3492C>T	c.(3490-3492)GAC>GAT	p.D1164D	SIPA1L2_uc001hvf.2_Silent_p.D238D	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1164					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CCCTGGCTCCGTCACATTCCA	0.567		NA											5	29					0	0	0	0
CHRM3	1131	broad.mit.edu	37	1	240072502	240072502	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:240072502G>A	uc001hyp.2	+	5	2530	c.1751G>A	c.(1750-1752)CGC>CAC	p.R584H		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	584	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TTTCACAAGCGCGCACCCGAG	0.522		NA											9	40					0	0	0	0
HNRNPU	3192	broad.mit.edu	37	1	245026026	245026026	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:245026026C>G	uc001iaz.1	-	2	916	c.698G>C	c.(697-699)GGC>GCC	p.G233A	HNRNPU_uc001iax.1_5'Flank|HNRNPU_uc001iay.1_5'Flank|HNRNPU_uc001iba.1_Missense_Mutation_p.G214A|HNRNPU_uc001ibb.1_5'UTR	NM_031844	NP_114032	Q00839	HNRPU_HUMAN	heterogeneous nuclear ribonucleoprotein U	233					CRD-mediated mRNA stabilization	catalytic step 2 spliceosome|cell surface|CRD-mediated mRNA stability complex|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	ATP binding|DNA binding|protein binding|RNA binding				0	all_cancers(71;6.97e-06)|all_epithelial(71;0.000104)|all_neural(11;0.0269)|Breast(184;0.0545)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0989)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.00868)			TTCTGTTTTGCCGTCCCCTAA	0.443		NA											47	77					0	0	0	0
OR2W5	441932	broad.mit.edu	37	1	247655122	247655122	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:247655122C>A	uc001icz.1	+	1	693	c.693C>A	c.(691-693)AGC>AGA	p.S231R		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	231					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			ATGAAGTCAGCAGCAGGGCGA	0.577		NA											27	61					1.43e-11	2.2e-11	1	0
OR2M2	391194	broad.mit.edu	37	1	248343988	248343988	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:248343988G>A	uc010pzf.1	+	1	701	c.701G>A	c.(700-702)CGT>CAT	p.R234H		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GGAGAGGGTCGTTGCAAAGCT	0.468		NA											46	49					0	0	0	0
PRKCQ	5588	broad.mit.edu	37	10	6521108	6521108	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:6521108T>A	uc001ijj.1	-	12	1274	c.1199A>T	c.(1198-1200)AAG>ATG	p.K400M	PRKCQ_uc009xim.1_Missense_Mutation_p.K400M|PRKCQ_uc001iji.1_Missense_Mutation_p.K433M|PRKCQ_uc009xin.1_Missense_Mutation_p.K364M|PRKCQ_uc010qax.1_Missense_Mutation_p.K275M	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	400	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						ATTGGTTTTCTTGAATTCTGC	0.388		NA											18	34					0	0	0	0
SFMBT2	57713	broad.mit.edu	37	10	7239525	7239525	+	Silent	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:7239525C>G	uc009xio.1	-	15	1774	c.1683G>C	c.(1681-1683)GTG>GTC	p.V561V	SFMBT2_uc001ijn.1_Silent_p.V561V|SFMBT2_uc010qay.1_Intron	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	561					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TAAGAACCAGCACGCATTTGC	0.483		NA											31	58					0	0	0	0
MCM10	55388	broad.mit.edu	37	10	13222601	13222601	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:13222601G>T	uc001ima.2	+	7	1028	c.927G>T	c.(925-927)GTG>GTT	p.V309V	MCM10_uc001imb.2_Silent_p.V308V|MCM10_uc001imc.2_Silent_p.V308V	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	309					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						CACAGAGTGTGAATAGTGTAA	0.408		NA											35	77					8.74e-17	1.42e-16	1	0
TRDMT1	1787	broad.mit.edu	37	10	17199734	17199734	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:17199734G>T	uc001iop.2	-	8	641	c.593C>A	c.(592-594)GCA>GAA	p.A198E	TRDMT1_uc001ioq.2_Missense_Mutation_p.A174E|TRDMT1_uc001ior.2_Missense_Mutation_p.A152E|TRDMT1_uc001ios.2_Missense_Mutation_p.A127E|TRDMT1_uc009xjt.2_Missense_Mutation_p.A117E|TRDMT1_uc010qcc.1_Missense_Mutation_p.A127E|TRDMT1_uc010qcd.1_Missense_Mutation_p.A75E	NM_004412	NP_004403	O14717	TRDMT_HUMAN	tRNA aspartic acid methyltransferase 1 isoform	198					tRNA processing	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|RNA binding			ovary(1)	1						TACATCCATTGCATATTTTTG	0.318		NA											14	18					4.38e-07	6.29e-07	1	0
CACNB2	783	broad.mit.edu	37	10	18807304	18807304	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:18807304C>A	uc001ipr.2	+	8	904	c.844C>A	c.(844-846)CGA>AGA	p.R282R	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Silent_p.R258R|CACNB2_uc001ipt.2_Silent_p.R244R|CACNB2_uc010qcl.1_RNA|CACNB2_uc001ipu.2_Silent_p.R254R|CACNB2_uc001ipv.2_Silent_p.R230R|CACNB2_uc009xka.1_Silent_p.R216R|CACNB2_uc001ipw.2_Silent_p.R189R|CACNB2_uc001ipx.2_Silent_p.R227R|CACNB2_uc009xkb.1_3'UTR|CACNB2_uc010qcm.1_Silent_p.R228R|CACNB2_uc001ipz.2_Silent_p.R204R|CACNB2_uc001ipy.2_Silent_p.R228R|CACNB2_uc010qcn.1_Silent_p.R196R|CACNB2_uc010qco.1_Silent_p.R196R|CACNB2_uc001iqa.2_Silent_p.R234R|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	282					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ACCTTCCATGCGACCAGTGGT	0.502		NA											44	91					3.77e-18	6.2e-18	1	0
ANKRD30A	91074	broad.mit.edu	37	10	37430667	37430667	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:37430667C>A	uc001iza.1	+	7	773	c.674C>A	c.(673-675)CCT>CAT	p.P225H		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	281						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GCAGGAACACCTGATGAGGCT	0.363		NA											10	29					9.7e-10	1.45e-09	1	0
OR13A1	79290	broad.mit.edu	37	10	45799384	45799384	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:45799384C>A	uc001jcc.1	-	4	796	c.487G>T	c.(487-489)GCC>TCC	p.A163S	OR13A1_uc001jcd.1_Missense_Mutation_p.A159S	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	163	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACGGCTGTGGCCAGCCCGCTG	0.597		NA											18	40					1.87e-06	2.65e-06	1	0
FAM21B	55747	broad.mit.edu	37	10	47915915	47915915	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:47915915C>A	uc009xni.2	+	15	1322	c.1322C>A	c.(1321-1323)TCA>TAA	p.S441*	FAM21B_uc001jep.3_Nonsense_Mutation_p.S336*	NM_018232	NP_060702	Q5SNT6	FA21B_HUMAN	hypothetical protein LOC55747	441					retrograde transport, endosome to Golgi	early endosome membrane|WASH complex				ovary(1)	1						AAGCCCTCATCAGAAACAAAG	0.403		NA											11	130					7.93e-07	1.13e-06	1	0
SLC18A3	6572	broad.mit.edu	37	10	50819675	50819675	+	Missense_Mutation	SNP	G	G	A	rs149097990		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:50819675G>A	uc001jhw.2	+	1	1329	c.889G>A	c.(889-891)GCG>ACG	p.A297T	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	297	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						GGTGGCCGGCGCGCTCACCAC	0.642		NA											25	44					0	0	0	0
A1CF	29974	broad.mit.edu	37	10	52619639	52619639	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:52619639C>T	uc001jjj.2	-	3	250	c.62G>A	c.(61-63)CGC>CAC	p.R21H	A1CF_uc010qhn.1_5'UTR|A1CF_uc001jji.2_Missense_Mutation_p.R21H|A1CF_uc001jjh.2_5'UTR|A1CF_uc010qho.1_5'UTR|A1CF_uc009xov.2_Missense_Mutation_p.R21H|A1CF_uc001jjk.1_Missense_Mutation_p.R21H	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	21					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						GACCAGTGCGCGGAGGGCTGC	0.478		NA											21	34					0	0	0	0
TMEM26	219623	broad.mit.edu	37	10	63212740	63212740	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:63212740G>T	uc001jlo.2	-	1	469	c.100C>A	c.(100-102)CCG>ACG	p.P34T	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlq.2_RNA|uc001jlr.2_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	34						integral to membrane					0	Prostate(12;0.0112)					CAGTACCGCGGCTCCTTCTTC	0.607		NA											32	64					2e-19	3.34e-19	1	0
MYPN	84665	broad.mit.edu	37	10	69935118	69935118	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:69935118C>T	uc001jnm.3	+	13	2788	c.2603C>T	c.(2602-2604)CCT>CTT	p.P868L	MYPN_uc001jnn.3_Missense_Mutation_p.P593L|MYPN_uc001jno.3_Missense_Mutation_p.P868L|MYPN_uc009xpt.2_Missense_Mutation_p.P868L|MYPN_uc010qit.1_Missense_Mutation_p.P574L|MYPN_uc010qiu.1_Intron	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	868						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						ACAAAGTCTCCTCAACCAGTG	0.433		NA											14	24					0	0	0	0
SLC25A16	8034	broad.mit.edu	37	10	70246946	70246946	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:70246946C>T	uc001joi.2	-	8	1249	c.797G>A	c.(796-798)CGG>CAG	p.R266Q	SLC25A16_uc010qix.1_Missense_Mutation_p.R132Q|SLC25A16_uc010qiy.1_Missense_Mutation_p.R168Q|SLC25A16_uc001joj.2_Missense_Mutation_p.R168Q	NM_152707	NP_689920	P16260	GDC_HUMAN	solute carrier family 25, member 16	266	Solcar 3.				coenzyme biosynthetic process|pantothenate metabolic process	integral to membrane|mitochondrial inner membrane	binding|solute:solute antiporter activity				0						TTGCATTCGCCGACGAGTCAC	0.333		NA											52	125					0	0	0	0
SAR1A	56681	broad.mit.edu	37	10	71913632	71913632	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:71913632G>A	uc010qjh.1	-	7	645	c.442C>T	c.(442-444)CGT>TGT	p.R148C	SAR1A_uc010qji.1_Missense_Mutation_p.R148C|SAR1A_uc010qjj.1_Missense_Mutation_p.R105C	NM_001142648	NP_001136120	Q9NR31	SAR1A_HUMAN	SAR1a gene homolog 1	148					ER to Golgi vesicle-mediated transport|intracellular protein transport	Golgi apparatus	GTP binding|GTPase activity				0						AATATCTCACGGAGTTTTTCT	0.338		NA											31	196					0	0	0	0
KCNMA1	3778	broad.mit.edu	37	10	78674745	78674745	+	Missense_Mutation	SNP	G	G	A	rs143599540	by1000genomes	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:78674745G>A	uc001jxn.2	-	24	3142	c.2965C>T	c.(2965-2967)CGT>TGT	p.R989C	KCNMA1_uc001jxj.2_Missense_Mutation_p.R935C|KCNMA1_uc001jxk.1_Missense_Mutation_p.R607C|KCNMA1_uc009xrt.1_Missense_Mutation_p.R780C|KCNMA1_uc001jxl.1_Missense_Mutation_p.R614C|KCNMA1_uc001jxo.2_Missense_Mutation_p.R972C|KCNMA1_uc001jxm.2_Missense_Mutation_p.R931C|KCNMA1_uc001jxq.2_Missense_Mutation_p.R934C	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	989	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GATGGTTGACGTAACATCCCG	0.483		NA											22	167					0	0	0	0
RGR	5995	broad.mit.edu	37	10	86017674	86017674	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:86017674C>A	uc001kdc.1	+	6	694	c.656C>A	c.(655-657)ACG>AAG	p.T219K	RGR_uc001kdd.1_Missense_Mutation_p.T223K|RGR_uc001kde.1_Intron	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	219	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CCAGCAAGGACGCTGCTGCTC	0.552		NA											11	35					1.09e-07	1.57e-07	1	0
PDLIM1	9124	broad.mit.edu	37	10	97050586	97050586	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:97050586G>A	uc001kkh.2	-	1	196	c.87C>T	c.(85-87)GCC>GCT	p.A29A	PDLIM1_uc001kki.2_Silent_p.A29A|PDLIM1_uc009xuv.2_Silent_p.A29A|PDLIM1_uc001kkj.1_Silent_p.A29A	NM_020992	NP_066272	O00151	PDLI1_HUMAN	PDZ and LIM domain 1	29	PDZ.				response to oxidative stress	cytoplasm|cytoskeleton	zinc ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		CCCGGGAAATGGCGAGAGGCT	0.706		NA											9	21					0	0	0	0
TCTN3	26123	broad.mit.edu	37	10	97440281	97440281	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:97440281G>A	uc001klb.3	-	13	1782	c.1538C>T	c.(1537-1539)CCG>CTG	p.P513L	TCTN3_uc001kla.3_Missense_Mutation_p.P357L|TCTN3_uc010qoi.1_Missense_Mutation_p.P365L	NM_015631	NP_056446	Q6NUS6	TECT3_HUMAN	tectonic 3 isoform a precursor	513	Extracellular (Potential).				apoptosis	integral to membrane					0		Colorectal(252;0.0815)		Epithelial(162;1.69e-07)|all cancers(201;5.63e-06)		ATGAGCTTGCGGGTTGGACAG	0.458		NA											35	148					0	0	0	0
LCOR	84458	broad.mit.edu	37	10	98714903	98714903	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:98714903G>A	uc001kms.1	+	8	1047	c.526G>A	c.(526-528)GGG>AGG	p.G176R	LCOR_uc001kmr.2_Missense_Mutation_p.G176R|C10orf12_uc009xvg.1_Intron|LCOR_uc001kmt.1_Missense_Mutation_p.G176R|LCOR_uc001kmu.1_Missense_Mutation_p.G176R	NM_032440	NP_115816	Q96JN0	LCOR_HUMAN	ligand dependent nuclear receptor corepressor	176						nucleus	DNA binding			ovary(3)	3		Colorectal(252;0.162)		Epithelial(162;4.43e-09)|all cancers(201;2.96e-07)		TGCCAGCCTTGGGCCATCTGG	0.463		NA											24	33					0	0	0	0
PDCD11	22984	broad.mit.edu	37	10	105162964	105162964	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:105162964C>A	uc001kwy.1	+	4	411	c.324C>A	c.(322-324)GGC>GGA	p.G108G		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	108	S1 motif 1.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		GCCTCCAGGGCTTTGTGCAAG	0.473		NA											76	135					3.55e-40	6.26e-40	1	0
C10orf81	79949	broad.mit.edu	37	10	115526201	115526201	+	Missense_Mutation	SNP	A	A	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:115526201A>C	uc001lat.1	+	2	604	c.42A>C	c.(40-42)GAA>GAC	p.E14D	C10orf81_uc001lar.1_Missense_Mutation_p.E20D|C10orf81_uc009xyc.1_5'UTR|C10orf81_uc001las.1_Intron	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	14	PH.									central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		ATGAAAATGAAGTCTGCAAAC	0.353		NA											8	57					0	0	0	0
CPXM2	119587	broad.mit.edu	37	10	125530532	125530532	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:125530532C>T	uc001lhk.1	-	8	1327	c.1002G>A	c.(1000-1002)ATG>ATA	p.M334I	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	334					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TATTGGGACACATTTCATTCA	0.433		NA											36	257					0	0	0	0
NKX6-2	84504	broad.mit.edu	37	10	134598892	134598892	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:134598892G>T	uc001llr.2	-	2	556	c.471C>A	c.(469-471)GGC>GGA	p.G157G		NM_177400	NP_796374	Q9C056	NKX62_HUMAN	NK6 transcription factor related, locus 2	157	Homeobox.					nucleus	sequence-specific DNA binding transcription factor activity				0		all_cancers(35;2.79e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0584)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;4.06e-05)|Epithelial(32;5.53e-05)|all cancers(32;5.99e-05)		AGATCTGCTGGCCCGAGAAGG	0.657		NA											7	8					8.13e-05	0.000110462	1	0
KNDC1	85442	broad.mit.edu	37	10	135015044	135015044	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:135015044C>G	uc001llz.1	+	17	3030	c.3029C>G	c.(3028-3030)GCC>GGC	p.A1010G	KNDC1_uc001lma.1_Missense_Mutation_p.A945G|KNDC1_uc001lmb.1_Missense_Mutation_p.A422G	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1010					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		AGCAGCAGGGCCCCCTGCTCA	0.627		NA											12	60					0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1264265	1264265	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:1264265C>T	uc009ycr.1	+	47	8360	c.8234C>T	c.(8233-8235)CCA>CTA	p.P2745L	MUC5B_uc001ltb.2_Missense_Mutation_p.P2055L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2052	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.			P -> L (in Ref. 4; CAA96577).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCAAAGTGCCAACTACCACA	0.642		NA											5	13					0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1264268	1264268	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:1264268C>G	uc009ycr.1	+	47	8363	c.8237C>G	c.(8236-8238)ACT>AGT	p.T2746S	MUC5B_uc001ltb.2_Missense_Mutation_p.T2056S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2053	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AAAGTGCCAACTACCACAACC	0.637		NA											5	13					0	0	0	0
OR51G2	81282	broad.mit.edu	37	11	4936073	4936073	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:4936073G>T	uc001lzr.1	-	1	821	c.821C>A	c.(820-822)CCC>CAC	p.P274H		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	274	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GACCAGGTGGGGTGCCTGCTT	0.507		NA											28	16					1.16e-09	1.73e-09	1	0
MMP26	56547	broad.mit.edu	37	11	5013232	5013232	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:5013232C>A	uc001lzv.2	+	5	652	c.634C>A	c.(634-636)CAT>AAT	p.H212N		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	212		Zinc; catalytic (By similarity).			collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGAGATTGGGCATTCTTTGGG	0.413		NA											5	33					0.000602214	0.000805998	1	0
OR51B2	79345	broad.mit.edu	37	11	5345007	5345007	+	Missense_Mutation	SNP	C	C	A	rs140971687		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:5345007C>A	uc001mao.1	-	1	576	c.521G>T	c.(520-522)CGT>CTT	p.R174L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R174R(1)		ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAGAAAGCACGTGTGATAAC	0.388		NA											20	9					4.63e-17	7.55e-17	1	0
OR51B6	390058	broad.mit.edu	37	11	5373354	5373354	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:5373354T>C	uc010qzb.1	+	1	617	c.617T>C	c.(616-618)TTG>TCG	p.L206S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCAATGGTCTTGTTGGACTTT	0.443		NA											12	20					0	0	0	0
DCHS1	8642	broad.mit.edu	37	11	6661270	6661270	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:6661270G>T	uc001mem.1	-	2	1985	c.1575C>A	c.(1573-1575)CCC>CCA	p.P525P		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	525	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCTGAGGTGGGGTCAATGG	0.587		NA											18	14					1.68e-08	2.45e-08	1	0
COPB1	1315	broad.mit.edu	37	11	14496152	14496152	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:14496152C>G	uc001mli.2	-	14	1933	c.1626G>C	c.(1624-1626)TTG>TTC	p.L542F	COPB1_uc001mlg.2_Missense_Mutation_p.L542F|COPB1_uc001mlh.2_Missense_Mutation_p.L542F	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	542					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						GGAATCCTCTCAAGGGAGGTC	0.443		NA											28	133					0	0	0	0
TPH1	7166	broad.mit.edu	37	11	18057644	18057644	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:18057644T>C	uc001mnp.2	-	2	189	c.163A>G	c.(163-165)AGA>GGA	p.R55G	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	55	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	GAGTTTCTTCTTTTTGATTTT	0.353		NA											28	32					0	0	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18158887	18158887	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:18158887G>A	uc001mnu.2	+	3	499	c.138G>A	c.(136-138)GCG>GCA	p.A46A		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	46	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						CAGGAAACGCGGTTGTGCTCT	0.602		NA											6	131					0	0	0	0
ANO5	203859	broad.mit.edu	37	11	22301227	22301227	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:22301227G>T	uc001mqi.2	+	22	2975	c.2658G>T	c.(2656-2658)GAG>GAT	p.E886D	ANO5_uc001mqj.2_Missense_Mutation_p.E885D	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	886	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						AATTAAAAGAGAACTTGGGAA	0.348		NA											17	38					1.57e-10	2.39e-10	1	0
SLC5A12	159963	broad.mit.edu	37	11	26734190	26734190	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:26734190T>A	uc001mra.2	-	2	716	c.403A>T	c.(403-405)ACG>TCG	p.T135S	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Missense_Mutation_p.T135S	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	135	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						CCACTTACCGTCTGTACAATG	0.423		NA											136	207					0	0	0	0
RAG1	5896	broad.mit.edu	37	11	36595801	36595801	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:36595801G>T	uc001mwu.3	+	2	1071	c.947G>T	c.(946-948)TGC>TTC	p.C316F	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	316	RING-type.	Zinc 2 (By similarity).			histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TGCCGGGTCTGCATTCTCAGA	0.507		NA							Familial_Hemophagocytic_Lymphohistiocytosis				34	32					1.71e-34	2.98e-34	1	0
TTC17	55761	broad.mit.edu	37	11	43428727	43428727	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:43428727G>T	uc001mxi.2	+	14	1815	c.1801G>T	c.(1801-1803)GAA>TAA	p.E601*	TTC17_uc001mxh.2_Nonsense_Mutation_p.E601*|TTC17_uc010rfj.1_Nonsense_Mutation_p.E544*|TTC17_uc001mxj.2_Nonsense_Mutation_p.E371*	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	601							binding			ovary(5)	5						TATCCCAGAAGAAGAAATTGG	0.284		NA											31	37					1.37e-20	2.31e-20	1	0
OR4C16	219428	broad.mit.edu	37	11	55340173	55340173	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:55340173C>A	uc010rih.1	+	1	570	c.570C>A	c.(568-570)ACC>ACA	p.T190T		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GTTCAGAAACCTATGTGGTTA	0.433		NA											33	43					6.01e-18	9.87e-18	1	0
CLP1	10978	broad.mit.edu	37	11	57428441	57428441	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:57428441C>T	uc001nkw.2	+	3	950	c.811C>T	c.(811-813)CCC>TCC	p.P271S	CLP1_uc010rjw.1_Missense_Mutation_p.P207S|CLP1_uc009yml.2_Missense_Mutation_p.P271S	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	271					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						ACGGGACCTCCCCCACTTTGT	0.542		NA											51	92					0	0	0	0
OR5A2	219981	broad.mit.edu	37	11	59189605	59189605	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:59189605C>A	uc010rkt.1	-	1	822	c.822G>T	c.(820-822)GTG>GTT	p.V274V		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATATGGACACCACCTTGTCCC	0.468		NA											27	14					5.62e-17	9.13e-17	1	0
MS4A6A	64231	broad.mit.edu	37	11	59949134	59949134	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:59949134G>T	uc001nor.2	-	2	305	c.67C>A	c.(67-69)CAA>AAA	p.Q23K	MS4A6A_uc001noq.2_Missense_Mutation_p.Q23K|MS4A6A_uc001nos.3_Missense_Mutation_p.Q51K|MS4A6A_uc009ymv.2_Missense_Mutation_p.Q23K|MS4A6A_uc001not.2_Missense_Mutation_p.Q23K|MS4A6A_uc010rla.1_Missense_Mutation_p.Q51K|MS4A6A_uc010rlb.1_Missense_Mutation_p.Q23K	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	23	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						TTCTCTGCTTGGGAGAAGTTG	0.428		NA											47	43					4.01e-20	6.75e-20	1	0
SLC22A25	387601	broad.mit.edu	37	11	62948160	62948160	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:62948160T>C	uc001nwr.1	-	6	1042	c.1042A>G	c.(1042-1044)AAA>GAA	p.K348E	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.K348E	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	348	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CAGATTCTTTTACATATGTTG	0.373		NA											29	16					0	0	0	0
PC	5091	broad.mit.edu	37	11	66619265	66619265	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:66619265A>T	uc001ojn.1	-	14	2027	c.1978T>A	c.(1978-1980)TTC>ATC	p.F660I	PC_uc001ojo.1_Missense_Mutation_p.F660I|PC_uc001ojp.1_Missense_Mutation_p.F660I|PC_uc001ojm.1_5'Flank	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	660	Carboxyltransferase.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	GCTCACTTGAAGACCACGTTG	0.627		NA											17	25					0	0	0	0
RSF1	51773	broad.mit.edu	37	11	77413134	77413134	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:77413134G>A	uc001oyn.2	-	6	1260	c.1140C>T	c.(1138-1140)GCC>GCT	p.A380A	RSF1_uc001oym.2_Silent_p.A128A	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	380					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			GTGGTATCTTGGCCTGCTGGT	0.358		NA											55	72					0	0	0	0
C11orf52	91894	broad.mit.edu	37	11	111796859	111796859	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:111796859A>G	uc001pmh.2	+	5	791	c.308A>G	c.(307-309)TAT>TGT	p.Y103C	C11orf52_uc001pmi.2_Missense_Mutation_p.Y103C	NM_080659	NP_542390	Q96A22	CK052_HUMAN	hypothetical protein LOC91894	103										ovary(1)	1		all_cancers(61;8.8e-15)|all_epithelial(67;6.27e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.63e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|all cancers(92;6.7e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0512)		GCTACAGAGTATGCGACCCTT	0.547		NA											26	14					0	0	0	0
CADM1	23705	broad.mit.edu	37	11	115049407	115049407	+	Silent	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:115049407C>G	uc001ppi.3	-	9	1296	c.1167G>C	c.(1165-1167)CTG>CTC	p.L389L	CADM1_uc001ppf.3_Silent_p.L361L|CADM1_uc001ppk.3_Silent_p.L361L|CADM1_uc001ppj.3_Silent_p.L390L|CADM1_uc001pph.3_Silent_p.L152L	NM_014333	NP_055148	Q9BY67	CADM1_HUMAN	immunoglobulin superfamily, member 4D isoform 1	389	Helical; (Potential).				adherens junction organization|apoptosis|cell differentiation|cell junction assembly|cell recognition|detection of stimulus|heterophilic cell-cell adhesion|homophilic cell adhesion|multicellular organismal development|positive regulation of cytokine secretion|spermatogenesis|susceptibility to natural killer cell mediated cytotoxicity	basolateral plasma membrane|cell-cell junction|integral to membrane	PDZ domain binding|protein C-terminus binding|protein homodimerization activity|receptor binding			ovary(2)	2	all_hematologic(175;0.0628)	all_cancers(61;2.98e-14)|all_epithelial(67;2.64e-08)|all_hematologic(158;0.000154)|Melanoma(852;0.000952)|Acute lymphoblastic leukemia(157;0.00101)|Breast(348;0.0102)|Medulloblastoma(222;0.0429)|Prostate(24;0.145)|all_neural(223;0.237)		BRCA - Breast invasive adenocarcinoma(274;5.01e-06)|Epithelial(105;0.000305)|all cancers(92;0.00303)		TGAGCAAGCACAGCATGGCGA	0.542		NA											52	45					0	0	0	0
HINFP	25988	broad.mit.edu	37	11	119003446	119003446	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:119003446G>T	uc001pvp.2	+	8	1019	c.830G>T	c.(829-831)CGT>CTT	p.R277L	HINFP_uc001pvq.2_Missense_Mutation_p.R277L|HINFP_uc001pvr.2_Missense_Mutation_p.R30L	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	277	C2H2-type 6.				DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						ATGCGCTTTCGTCACAGTGAG	0.542		NA											40	29					1.3e-30	2.25e-30	1	0
TECTA	7007	broad.mit.edu	37	11	120989055	120989055	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:120989055G>A	uc010rzo.1	+	6	831	c.831G>A	c.(829-831)TTG>TTA	p.L277L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	277	VWFC.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GGGATGACTTGAACTGCACCG	0.408		NA											18	16					0	0	0	0
KIRREL3	84623	broad.mit.edu	37	11	126301325	126301325	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:126301325C>A	uc001qea.2	-	14	2046	c.1685G>T	c.(1684-1686)CGT>CTT	p.R562L	KIRREL3_uc001qeb.2_Missense_Mutation_p.R550L|KIRREL3_uc001qec.1_Missense_Mutation_p.R562L|ST3GAL4_uc001qdx.1_Intron	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	562	Cytoplasmic (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		TCTCTGGGAACGGGCACAGCA	0.607		NA											16	12					5.01e-05	6.88e-05	1	0
WNK1	65125	broad.mit.edu	37	12	990928	990928	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:990928C>T	uc001qio.3	+	13	3689	c.3182C>T	c.(3181-3183)CCG>CTG	p.P1061L	WNK1_uc001qip.3_Missense_Mutation_p.P814L|WNK1_uc001qir.3_Missense_Mutation_p.P234L	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1061					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			GCTACCCAGCCGACCACTTTG	0.473		NA											21	100					0	0	0	0
KCNA6	3742	broad.mit.edu	37	12	4919476	4919476	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:4919476G>A	uc001qng.2	+	1	1135	c.269G>A	c.(268-270)CGG>CAG	p.R90Q		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	90						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GACCGCAACCGGCCCAGCTTC	0.647		NA								HNSCC(72;0.22)			40	50					0	0	0	0
TNFRSF1A	7132	broad.mit.edu	37	12	6438763	6438763	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:6438763G>A	uc001qnu.2	-	10	1364	c.1083C>T	c.(1081-1083)GCC>GCT	p.A361A	TNFRSF1A_uc001qnt.2_Silent_p.A253A|TNFRSF1A_uc010sey.1_Silent_p.A129A|TNFRSF1A_uc010sez.1_Silent_p.A253A|TNFRSF1A_uc009zek.2_Silent_p.A318A	NM_001065	NP_001056	P19438	TNR1A_HUMAN	tumor necrosis factor receptor 1 precursor	361	Death.|Cytoplasmic (Potential).				apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|inflammatory response|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of inflammatory response|positive regulation of transcription from RNA polymerase II promoter|prostaglandin metabolic process	extracellular region|integral to plasma membrane|membrane raft	tumor necrosis factor receptor activity			lung(2)|skin(1)	3						TCTCCACCACGGCGTACAGCG	0.726		NA											3	14					0	0	0	0
PRB2	653247	broad.mit.edu	37	12	11546608	11546608	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:11546608G>T	uc010shk.1	-	3	439	c.404C>A	c.(403-405)CCT>CAT	p.P135H		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTTCCTGGAGGAGGTGGAGG	0.607		NA											149	351					4.77e-67	8.5e-67	1	0
ATF7IP	55729	broad.mit.edu	37	12	14578009	14578009	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:14578009C>G	uc001rbw.2	+	2	1318	c.1160C>G	c.(1159-1161)TCT>TGT	p.S387C	ATF7IP_uc010shs.1_Missense_Mutation_p.S387C|ATF7IP_uc001rbu.2_Missense_Mutation_p.S387C|ATF7IP_uc001rbv.1_Missense_Mutation_p.S387C|ATF7IP_uc001rbx.2_Missense_Mutation_p.S387C|ATF7IP_uc010sht.1_Missense_Mutation_p.S387C|ATF7IP_uc001rby.3_Missense_Mutation_p.S387C|ATF7IP_uc001rbz.1_Missense_Mutation_p.S387C|ATF7IP_uc001rca.2_Missense_Mutation_p.S387C|ATF7IP_uc001rcb.2_Translation_Start_Site	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	387	Glu-rich.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						GATGCTATATCTAGCAGTATG	0.343		NA											15	91					0	0	0	0
ABCC9	10060	broad.mit.edu	37	12	22063217	22063217	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:22063217G>T	uc001rfi.1	-	8	1214	c.1194C>A	c.(1192-1194)CTC>CTA	p.L398L	ABCC9_uc001rfh.2_Silent_p.L398L|ABCC9_uc001rfj.1_Silent_p.L398L	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	398	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAGACGTAGAGAGCCTAAGGA	0.353		NA											8	58					2.18e-05	3.02e-05	1	0
DENND5B	160518	broad.mit.edu	37	12	31542309	31542309	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:31542309C>T	uc001rki.1	-	20	3776	c.3590G>A	c.(3589-3591)AGG>AAG	p.R1197K	DENND5B_uc001rkh.1_Missense_Mutation_p.R1232K|DENND5B_uc009zjq.1_Intron	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	1197	RUN 2.					integral to membrane				ovary(1)|central_nervous_system(1)	2						CCCAATGTTCCTGGGTGCAGT	0.373		NA											13	24					0	0	0	0
PRPF40B	25766	broad.mit.edu	37	12	50035774	50035774	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:50035774G>A	uc001rur.1	+	18	1849	c.1785G>A	c.(1783-1785)CTG>CTA	p.L595L	FMNL3_uc001ruv.1_3'UTR|FMNL3_uc001ruw.1_3'UTR|PRPF40B_uc001rup.1_Silent_p.L617L|PRPF40B_uc001ruq.1_Silent_p.L582L|PRPF40B_uc001rus.1_Silent_p.L538L|FMNL3_uc001rut.1_3'UTR|FMNL3_uc001ruu.1_3'UTR	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	595					mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CTGCCGCACTGGACGCAGGCA	0.567		NA											22	90					0	0	0	0
PRPF40B	25766	broad.mit.edu	37	12	50036073	50036073	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:50036073G>A	uc001rur.1	+	19	1938	c.1874G>A	c.(1873-1875)AGG>AAG	p.R625K	FMNL3_uc001ruv.1_3'UTR|FMNL3_uc001ruw.1_3'UTR|PRPF40B_uc001rup.1_Missense_Mutation_p.R647K|PRPF40B_uc001ruq.1_Missense_Mutation_p.R612K|PRPF40B_uc001rus.1_Missense_Mutation_p.R568K|FMNL3_uc001rut.1_3'UTR|FMNL3_uc001ruu.1_3'UTR	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	625					mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						GAGGCACGCAGGATGCGGCGC	0.637		NA											16	64					0	0	0	0
SCN8A	6334	broad.mit.edu	37	12	52078000	52078000	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:52078000A>G	uc001ryw.2	+	3	497	c.319A>G	c.(319-321)AGT>GGT	p.S107G	SCN8A_uc010snl.1_5'Flank|SCN8A_uc001ryx.1_5'Flank|SCN8A_uc001ryz.1_5'Flank|SCN8A_uc001ryy.2_5'Flank	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	107					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	CTTCAGATTTAGTGCCACGCC	0.358		NA											25	44					0	0	0	0
ATF7	11016	broad.mit.edu	37	12	53925601	53925601	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:53925601A>G	uc001sdy.2	-	8	908	c.887T>C	c.(886-888)ATG>ACG	p.M296T	ATF7_uc010sok.1_RNA|ATF7_uc001sdz.2_Missense_Mutation_p.M285T|ATF7_uc010sol.1_Missense_Mutation_p.M264T	NM_001130059	NP_001123531	P17544	ATF7_HUMAN	activating transcription factor 7 isoform 1	296	Transactivation domain.				interspecies interaction between organisms	cytoplasm|nuclear periphery|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						GGCTGTCACCATGGTGCTGGC	0.537		NA											12	22					0	0	0	0
GRIP1	23426	broad.mit.edu	37	12	66814550	66814550	+	Silent	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:66814550T>A	uc001stk.2	-	14	1873	c.1632A>T	c.(1630-1632)CCA>CCT	p.P544P	GRIP1_uc010sta.1_Silent_p.P488P|GRIP1_uc001stj.2_Silent_p.P326P|GRIP1_uc001stl.1_Silent_p.P436P|GRIP1_uc001stm.2_Silent_p.P544P	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	596	PDZ 5.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		GGGGGTCTCCTGGTTTTCTAC	0.368		NA											45	82					0	0	0	0
PTPRR	5801	broad.mit.edu	37	12	71286643	71286643	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:71286643G>T	uc001swi.1	-	2	589	c.173C>A	c.(172-174)CCA>CAA	p.P58Q		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	58	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		GATTTTTTGTGGGGCTATATC	0.408		NA											60	126					7.48e-22	1.27e-21	1	0
DUSP6	1848	broad.mit.edu	37	12	89745563	89745563	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:89745563C>A	uc001tay.2	-	1	734	c.254G>T	c.(253-255)CGC>CTC	p.R85L	DUSP6_uc001taz.2_Missense_Mutation_p.R85L	NM_001946	NP_001937	Q16828	DUS6_HUMAN	dual specificity phosphatase 6 isoform a	85	Rhodanese.				dorsal/ventral pattern formation|inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|nerve growth factor receptor signaling pathway|positive regulation of apoptosis|regulation of endodermal cell fate specification|regulation of fibroblast growth factor receptor signaling pathway|regulation of heart growth|response to nitrosative stress|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0						CCGGGTGAAGCGGTCCCGGTC	0.687		NA											3	8					0.004672	0.00609646	1	0
ANKS1B	56899	broad.mit.edu	37	12	99223121	99223122	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:99223121_99223122CC>AA	uc001tge.1	-	19	3313_3314	c.2896_2897GG>TT	c.(2896-2898)GGT>TTT	p.G966F	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc001tgk.2_Missense_Mutation_p.G263F|ANKS1B_uc010svd.1_5'UTR|ANKS1B_uc001tgd.1_Intron|ANKS1B_uc009ztq.2_5'UTR|ANKS1B_uc010sve.1_5'UTR|ANKS1B_uc001tgh.3_5'UTR|ANKS1B_uc001tgi.2_Missense_Mutation_p.G192F|ANKS1B_uc009ztr.2_Intron|ANKS1B_uc001tgj.2_Intron|ANKS1B_uc009ztp.2_5'UTR|ANKS1B_uc010svf.1_5'UTR|ANKS1B_uc001tgg.3_Intron|ANKS1B_uc010svg.1_Intron|ANKS1B_uc009zts.1_Missense_Mutation_p.G192F	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	966						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		AGTGTGATTACCACTGGGTTCC	0.441		NA											22	39					0	0	0	0
NR1H4	9971	broad.mit.edu	37	12	100904813	100904813	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:100904813C>A	uc001tht.1	+	2	395	c.367C>A	c.(367-369)CGC>AGC	p.R123S	NR1H4_uc001thp.1_Missense_Mutation_p.R113S|NR1H4_uc001thq.1_Missense_Mutation_p.R113S|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.R113S|NR1H4_uc010svk.1_Missense_Mutation_p.R113S|NR1H4_uc001ths.1_Missense_Mutation_p.R123S	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	123					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						AAAGAAGCCCCGCATGGGCGC	0.527		NA											22	51					3.62e-10	5.48e-10	1	0
TRPV4	59341	broad.mit.edu	37	12	110236583	110236583	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:110236583C>T	uc001tpj.1	-	5	1083	c.988G>A	c.(988-990)GCC>ACC	p.A330T	TRPV4_uc001tpg.1_Missense_Mutation_p.A296T|TRPV4_uc001tph.1_Missense_Mutation_p.A283T|TRPV4_uc001tpi.1_Missense_Mutation_p.A283T|TRPV4_uc001tpk.1_Missense_Mutation_p.A330T|TRPV4_uc001tpl.1_Missense_Mutation_p.A330T	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	330	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TCAGCAATGGCCACCAGCGCA	0.592		NA											13	29					0	0	0	0
NAA25	80018	broad.mit.edu	37	12	112512522	112512522	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:112512522G>A	uc001ttm.2	-	9	843	c.823C>T	c.(823-825)CGA>TGA	p.R275*	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Nonsense_Mutation_p.R247*|NAA25_uc009zwa.1_Nonsense_Mutation_p.R275*	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	275						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TCAATCAGTCGAAAGACAGAA	0.393		NA											25	145					0	0	0	0
TAOK3	51347	broad.mit.edu	37	12	118590137	118590137	+	Silent	SNP	G	G	A	rs143511282	byFrequency	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:118590137G>A	uc001twx.2	-	20	2725	c.2430C>T	c.(2428-2430)AAC>AAT	p.N810N	TAOK3_uc001twv.2_Silent_p.N350N|TAOK3_uc001tww.2_Silent_p.N640N|TAOK3_uc001twy.3_Silent_p.N810N	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	810	Potential.				MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCTGGTAGGCGTTGAGCAGCT	0.532		NA											43	58					0	0	0	0
CCDC60	160777	broad.mit.edu	37	12	119978426	119978426	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:119978426G>A	uc001txe.2	+	14	2024	c.1559G>A	c.(1558-1560)CGA>CAA	p.R520Q	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	520										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CAGTTTGTGCGAGAACACATC	0.512		NA											12	92					0	0	0	0
PXN	5829	broad.mit.edu	37	12	120650198	120650198	+	Silent	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr12:120650198G>C	uc001txt.2	-	12	1826	c.1695C>G	c.(1693-1695)CTC>CTG	p.L565L	uc001txs.1_RNA|PXN_uc001txu.2_Silent_p.L377L|PXN_uc001txv.2_Silent_p.L446L|PXN_uc001txx.2_Silent_p.L398L|PXN_uc001txy.2_Silent_p.L531L|PXN_uc001txz.2_RNA	NM_001080855	NP_001074324	P49023	PAXI_HUMAN	paxillin isoform 1	565	LIM zinc-binding 4.				cell junction assembly|cell-matrix adhesion|cellular response to reactive oxygen species|epidermal growth factor receptor signaling pathway|growth hormone receptor signaling pathway|muscle contraction|signal complex assembly	cytoplasm|focal adhesion|lamellipodium|microtubule associated complex	beta-catenin binding|vinculin binding|zinc ion binding			ovary(1)|breast(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGAGCTGCTTGAGGCAGAAGG	0.587		NA											4	37					0	0	0	0
SACS	26278	broad.mit.edu	37	13	23909308	23909308	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:23909308C>A	uc001uon.2	-	10	9296	c.8707G>T	c.(8707-8709)GTT>TTT	p.V2903F	SACS_uc001uoo.2_Missense_Mutation_p.V2756F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2903					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CGAACACCAACTCCATTATCA	0.418		NA											22	41					0.000295444	0.000397739	1	0
NBEA	26960	broad.mit.edu	37	13	35735894	35735894	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:35735894A>T	uc001uvb.2	+	24	4075	c.3869A>T	c.(3868-3870)CAG>CTG	p.Q1290L	NBEA_uc010abi.2_5'UTR	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1290						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TAGGCTGTGCAGGGTCGGTCT	0.403		NA											6	19					0	0	0	0
OLFM4	10562	broad.mit.edu	37	13	53624258	53624258	+	Silent	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:53624258A>T	uc001vhl.2	+	5	885	c.885A>T	c.(883-885)ACA>ACT	p.T295T	OLFM4_uc001vhk.1_Intron	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	295	Olfactomedin-like.				cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		CATTGAATACAGATGGGAGAC	0.443		NA											40	65					0	0	0	0
C13orf34	79866	broad.mit.edu	37	13	73320896	73320896	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:73320896G>A	uc001viv.1	+	10	1248	c.1129G>A	c.(1129-1131)GCC>ACC	p.A377T	C13orf34_uc010thq.1_Missense_Mutation_p.A152T|C13orf34_uc010aen.1_Missense_Mutation_p.A452T|C13orf34_uc010thr.1_Missense_Mutation_p.A307T|C13orf34_uc001viw.1_Missense_Mutation_p.A326T	NM_024808	NP_079084	Q6PGQ7	BORA_HUMAN	aurora borealis	377					cell division|mitosis|regulation of mitosis|regulation of mitotic spindle organization|regulation of protein localization		protein kinase binding				0		Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.000227)		CTCATCACCCGCCATGGATGC	0.438		NA											33	68					0	0	0	0
TBC1D4	9882	broad.mit.edu	37	13	75936702	75936702	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:75936702C>T	uc001vjl.1	-	2	887	c.540G>A	c.(538-540)GCG>GCA	p.A180A	TBC1D4_uc010aer.2_Silent_p.A180A|TBC1D4_uc010aes.2_Silent_p.A180A	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	180	PID 1.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		CTTTCATGGCCGCTTTAGATA	0.413		NA											69	151					0	0	0	0
IPO5	3843	broad.mit.edu	37	13	98642692	98642692	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:98642692G>A	uc001vnf.1	+	6	635	c.570G>A	c.(568-570)AGG>AGA	p.R190R	IPO5_uc001vne.2_Silent_p.R208R|IPO5_uc010tik.1_Intron|IPO5_uc010til.1_Silent_p.R130R	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	190					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						TTTAGATCAGGACGTTATCTG	0.343		NA											21	49					0	0	0	0
RNF113B	140432	broad.mit.edu	37	13	98828638	98828638	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:98828638G>A	uc001vnk.2	-	1	884	c.853C>T	c.(853-855)CGG>TGG	p.R285W	FARP1_uc001vnh.2_Intron|FARP1_uc001vni.2_Intron|FARP1_uc001vnj.2_Intron	NM_178861	NP_849192	Q8IZP6	R113B_HUMAN	ring finger protein 113B	285	RING-type.						nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.13)			GGGGTGGCCCGGAAGTGCTCC	0.557		NA											18	85					0	0	0	0
NALCN	259232	broad.mit.edu	37	13	101762992	101762992	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:101762992G>T	uc001vox.1	-	20	2531	c.2342C>A	c.(2341-2343)TCT>TAT	p.S781Y		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	781	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AGTTTCAAGAGATTTTCCCCT	0.383		NA											23	64					6.13e-19	1.02e-18	1	0
MYO16	23026	broad.mit.edu	37	13	109379876	109379876	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr13:109379876C>A	uc001vqt.1	+	4	512	c.386C>A	c.(385-387)CCC>CAC	p.P129H	MYO16_uc010agk.1_Missense_Mutation_p.P151H	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	129	ANK 3.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TTCTGGACGCCCATGCACATT	0.423		NA											28	46					4.88e-14	7.71e-14	1	0
MYH6	4624	broad.mit.edu	37	14	23870013	23870013	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr14:23870013A>T	uc001wjv.2	-	13	1382	c.1315T>A	c.(1315-1317)TGG>AGG	p.W439R	MYH6_uc010akp.1_Missense_Mutation_p.W439R	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	439	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GTCACCATCCAGTTGAACATC	0.567		NA											34	54					0	0	0	0
NYNRIN	57523	broad.mit.edu	37	14	24877130	24877130	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr14:24877130C>T	uc001wpf.3	+	3	572	c.254C>T	c.(253-255)CCG>CTG	p.P85L		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	85					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CGCTACCCACCGATCCTGCAC	0.632		NA											22	92					0	0	0	0
NAA30	122830	broad.mit.edu	37	14	57866573	57866573	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr14:57866573A>G	uc001xcx.3	+	4	1077	c.923A>G	c.(922-924)TAT>TGT	p.Y308C	NAA30_uc010trk.1_Missense_Mutation_p.Y50C|NAA30_uc010aow.2_Intron	NM_001011713	NP_001011713	Q147X3	NAA30_HUMAN	N-acetyltransferase 12	308	N-acetyltransferase.					cytoplasm	peptide alpha-N-acetyltransferase activity			skin(1)	1						AAAGCTATATATGCCATGGTT	0.264		NA											59	57					0	0	0	0
SLC38A6	145389	broad.mit.edu	37	14	61519120	61519120	+	Silent	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr14:61519120C>G	uc001xfg.1	+	16	1460	c.1344C>G	c.(1342-1344)CTC>CTG	p.L448L	SLC38A6_uc001xfh.1_Intron|SLC38A6_uc001xfi.2_RNA|SLC38A6_uc001xfj.1_RNA|SLC38A6_uc001xfk.2_RNA|SLC38A6_uc010trz.1_Intron	NM_153811	NP_722518	Q8IZM9	S38A6_HUMAN	solute carrier family 38, member 6	448	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		GTTTAGCACTCATCATTTTTG	0.254		NA											4	9					0	0	0	0
NRXN3	9369	broad.mit.edu	37	14	79933568	79933568	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr14:79933568C>T	uc001xun.2	+	13	2639	c.2148C>T	c.(2146-2148)GGC>GGT	p.G716G	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Silent_p.G84G|NRXN3_uc010asw.2_Silent_p.G84G|NRXN3_uc001xur.3_Silent_p.G84G	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1089	Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TTGCAGCTGGCGCTACGTACA	0.557		NA											8	27					0	0	0	0
NDN	4692	broad.mit.edu	37	15	23931618	23931618	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:23931618G>A	uc001ywk.2	-	1	833	c.747C>T	c.(745-747)CGC>CGT	p.R249R		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	249	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		CGTATGGGACGCGCTGGTACT	0.587		NA							Prader-Willi_syndrome				20	21					0	0	0	0
C15orf2	23742	broad.mit.edu	37	15	24921238	24921238	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:24921238C>A	uc001ywo.2	+	1	698	c.224C>A	c.(223-225)CCT>CAT	p.P75H		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	75					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGTCCTCTCCCTCGGGCTGCG	0.711		NA											13	35					4.37e-10	6.59e-10	1	0
C15orf2	23742	broad.mit.edu	37	15	24923722	24923722	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:24923722C>A	uc001ywo.2	+	1	3182	c.2708C>A	c.(2707-2709)GCC>GAC	p.A903D		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	903					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ACACTTGGGGCCACTGATGGG	0.498		NA											75	92					1.16e-35	2.02e-35	1	0
SNURF	8926	broad.mit.edu	37	15	25213119	25213119	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:25213119C>A	uc001ywu.2	+	3	277	c.151C>A	c.(151-153)CCT>ACT	p.P51T	SNRPN_uc001ywp.1_5'UTR|SNRPN_uc001ywq.1_5'UTR|SNRPN_uc001ywr.1_5'UTR|SNRPN_uc001yws.1_Intron|SNRPN_uc001ywt.1_5'UTR|SNRPN_uc001ywv.1_5'UTR|SNRPN_uc001yww.1_5'UTR|SNRPN_uc001ywx.1_5'UTR|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_RNA|SNRPN_uc001ywy.1_Missense_Mutation_p.P51T	NM_022804	NP_073715	Q9Y675	SNURF_HUMAN	SNRPN upstream reading frame protein	51						nucleus					0		all_cancers(20;1.4e-21)|Breast(32;0.000625)		all cancers(64;3.48e-07)|Epithelial(43;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0142)		GCAGCAAGTACCTGTGGTGGA	0.433		NA											41	70					1.32e-36	2.32e-36	1	0
ATP10A	57194	broad.mit.edu	37	15	25940151	25940151	+	Missense_Mutation	SNP	C	C	T	rs150976669		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:25940151C>T	uc010ayu.2	-	14	3009	c.2903G>A	c.(2902-2904)CGC>CAC	p.R968H		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	968	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GCTGGGTCTGCGGCCAGAGGC	0.602		NA											10	66					0	0	0	0
APBA2	321	broad.mit.edu	37	15	29406125	29406125	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:29406125G>T	uc001zck.2	+	13	2291	c.2084G>T	c.(2083-2085)CGT>CTT	p.R695L	APBA2_uc010uat.1_Missense_Mutation_p.R683L|APBA2_uc001zcl.2_Missense_Mutation_p.R683L	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	695	PDZ 2.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		GGGGGCGTCCGTGTGGGCCAC	0.627		NA											19	31					2.55e-18	4.2e-18	1	0
NDUFAF1	51103	broad.mit.edu	37	15	41688684	41688684	+	Splice_Site	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:41688684C>A	uc001znx.2	-	2	955	c.573_splice	c.e2+1	p.R191_splice	NDUFAF1_uc010bcf.2_Splice_Site	NM_016013	NP_057097	Q9Y375	CIA30_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha						mitochondrial electron transport, NADH to ubiquinone|protein complex assembly	mitochondrial respiratory chain complex I	unfolded protein binding			ovary(1)	1		all_cancers(109;5.07e-19)|all_epithelial(112;2.43e-16)|Lung NSC(122;1.81e-11)|all_lung(180;4.81e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;8e-17)|GBM - Glioblastoma multiforme(113;1.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.114)		GCCTCACCTACCCTTGGAATC	0.468		NA											19	34					1.68e-08	2.45e-08	1	0
SPTBN5	51332	broad.mit.edu	37	15	42168381	42168381	+	Silent	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:42168381T>A	uc001zos.2	-	21	4281	c.3948A>T	c.(3946-3948)ACA>ACT	p.T1316T		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	1351	Spectrin 10.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCCGCTTGAGTGTCTGCAGGA	0.637		NA											8	23					0	0	0	0
STRC	161497	broad.mit.edu	37	15	43910166	43910166	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:43910166C>A	uc001zsf.2	-	2	531	c.453G>T	c.(451-453)GGG>GGT	p.G151G	STRC_uc010bdl.2_5'UTR|STRC_uc010udz.1_RNA|STRC_uc001zsg.1_Silent_p.G77G	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	151					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TAGGGGGGCCCCCAGGAACTA	0.637		NA											22	76					2.98e-07	4.3e-07	1	0
UNC13C	440279	broad.mit.edu	37	15	54306698	54306698	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:54306698C>T	uc002ack.2	+	1	1598	c.1598C>T	c.(1597-1599)CCT>CTT	p.P533L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	533					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GATGCAACACCTCTCTGGCAC	0.358		NA											20	30					0	0	0	0
TCF12	6938	broad.mit.edu	37	15	57574756	57574756	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:57574756G>A	uc002aec.2	+	19	2304	c.2020G>A	c.(2020-2022)GAA>AAA	p.E674K	TCF12_uc010ugm.1_Intron|TCF12_uc010ugn.1_Missense_Mutation_p.E694K|TCF12_uc002aea.2_Missense_Mutation_p.E698K|TCF12_uc010bfs.2_Missense_Mutation_p.E95K|TCF12_uc002aeb.2_Missense_Mutation_p.E698K|TCF12_uc002aed.2_Missense_Mutation_p.E674K|TCF12_uc002aee.2_Missense_Mutation_p.E504K|TCF12_uc010bft.2_Missense_Mutation_p.E528K|TCF12_uc010ugo.1_Missense_Mutation_p.E438K|TCF12_uc010ugp.1_Missense_Mutation_p.E331K|TCF12_uc010ugq.1_Missense_Mutation_p.E308K	NM_207038	NP_996921	Q99081	HTF4_HUMAN	transcription factor 12 isoform b	674					immune response|muscle organ development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(2)|lung(1)	8		Colorectal(260;0.0907)		all cancers(107;0.000313)|GBM - Glioblastoma multiforme(80;0.00878)|STAD - Stomach adenocarcinoma(283;0.239)		TGGGCTTAGTGAAACTACCAA	0.468		NA	T	TEC	extraskeletal myxoid chondrosarcoma								25	124					0	0	0	0
CILP	8483	broad.mit.edu	37	15	65489842	65489842	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:65489842G>A	uc002aon.2	-	9	2963	c.2782C>T	c.(2782-2784)CCC>TCC	p.P928S		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	928					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TCGTTGAAGGGGACTGTGTTG	0.522		NA											35	64					0	0	0	0
HCN4	10021	broad.mit.edu	37	15	73621967	73621967	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:73621967C>T	uc002avp.2	-	4	2531	c.1537G>A	c.(1537-1539)GCC>ACC	p.A513T		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	513	Helical; Name=Segment S6; (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		AGGGCAGTGGCGTGGCCAATG	0.652		NA											12	61					0	0	0	0
C15orf59	388135	broad.mit.edu	37	15	74032915	74032915	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:74032915C>T	uc002avy.2	-	2	570	c.225G>A	c.(223-225)ACG>ACA	p.T75T		NM_001039614	NP_001034703	Q2T9L4	CO059_HUMAN	hypothetical protein LOC388135	75										pancreas(1)	1						TCACAGTGGCCGTGGTCCAGT	0.592		NA											88	129					0	0	0	0
SCAMP2	10066	broad.mit.edu	37	15	75142867	75142867	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:75142867T>C	uc002azb.1	-	6	694	c.620A>G	c.(619-621)TAT>TGT	p.Y207C	SCAMP2_uc002aza.1_Missense_Mutation_p.Y57C|SCAMP2_uc010bkg.1_Intron	NM_005697	NP_005688	O15127	SCAM2_HUMAN	secretory carrier membrane protein 2	207	Cytoplasmic (Potential).|Interaction with SLC9A7.				post-Golgi vesicle-mediated transport|protein transport	integral to membrane|nucleus|recycling endosome membrane|trans-Golgi network membrane	protein binding			ovary(1)	1						AAAGGCCTTATAGATGGGTCG	0.562		NA											4	157					0	0	0	0
HOMER2	9455	broad.mit.edu	37	15	83527813	83527813	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:83527813C>G	uc002bjg.2	-	5	681	c.495G>C	c.(493-495)GAG>GAC	p.E165D	HOMER2_uc002bjh.2_Missense_Mutation_p.E154D|HOMER2_uc002bjj.2_Missense_Mutation_p.E154D|HOMER2_uc002bji.2_Missense_Mutation_p.E165D	NM_199330	NP_955362	Q9NSB8	HOME2_HUMAN	homer 2 isoform 2	165	Potential.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane					0						GCTTGTCATTCTCAGACTTCA	0.507		NA											5	196					0	0	0	0
AGBL1	123624	broad.mit.edu	37	15	86838537	86838537	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:86838537C>T	uc002blz.1	+	16	2214	c.2134C>T	c.(2134-2136)CGG>TGG	p.R712W	AGBL1_uc002bma.1_Missense_Mutation_p.R443W|AGBL1_uc002bmb.1_Missense_Mutation_p.R406W	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	712					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GGTCTACTTCCGGCAAGATGT	0.468		NA											11	86					0	0	0	0
CRTC3	64784	broad.mit.edu	37	15	91162992	91162992	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:91162992G>A	uc002bpp.2	+	9	825	c.719G>A	c.(718-720)CGC>CAC	p.R240H	CRTC3_uc002bpo.2_Missense_Mutation_p.R240H	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	240					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			CTGTCAGGACGCCCTCGATCC	0.443		NA	T	MAML2	salivary gland mucoepidermoid								13	123					0	0	0	0
IGF1R	3480	broad.mit.edu	37	15	99434760	99434760	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr15:99434760G>A	uc002bul.2	+	3	897	c.847G>A	c.(847-849)GCC>ACC	p.A283T	IGF1R_uc010urq.1_Missense_Mutation_p.A283T|IGF1R_uc010bon.2_Missense_Mutation_p.A283T	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	283					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	TGACTTCTGCGCCAACATCCT	0.637		NA											11	70					0	0	0	0
ZNF646	9726	broad.mit.edu	37	16	31088376	31088376	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr16:31088376G>A	uc002eap.2	+	2	1020	c.731G>A	c.(730-732)TGT>TAT	p.C244Y	ZNF668_uc002eao.2_5'Flank	NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	244	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						TGTAGTCAGTGTGGCAAGACC	0.582		NA											6	46					0	0	0	0
ITGAM	3684	broad.mit.edu	37	16	31308840	31308840	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr16:31308840C>T	uc002ebq.2	+	13	1460	c.1362C>T	c.(1360-1362)GGC>GGT	p.G454G	ITGAM_uc002ebr.2_Silent_p.G454G|ITGAM_uc010cam.1_Missense_Mutation_p.R58C|ITGAM_uc010can.2_5'UTR	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	454	FG-GAP 5.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						TTCAGATCGGCGCCTACTTCG	0.582		NA											27	168					0	0	0	0
LONP2	83752	broad.mit.edu	37	16	48295405	48295405	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr16:48295405A>T	uc002efi.1	+	5	883	c.794A>T	c.(793-795)GAA>GTA	p.E265V	LONP2_uc010vgm.1_RNA|LONP2_uc002efj.1_Missense_Mutation_p.E221V	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	265					misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						GATGAAGATGAAGATAATGAT	0.353		NA											34	91					0	0	0	0
FAM65A	79567	broad.mit.edu	37	16	67574374	67574374	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr16:67574374C>T	uc010vjp.1	+	9	801	c.705C>T	c.(703-705)TTC>TTT	p.F235F	FAM65A_uc010cei.1_Silent_p.F57F|FAM65A_uc002eth.2_Silent_p.F215F|FAM65A_uc010cej.2_Silent_p.F218F|FAM65A_uc002eti.1_Silent_p.F178F|FAM65A_uc010vjq.1_Silent_p.F229F|FAM65A_uc002etj.1_Silent_p.F214F|FAM65A_uc002etk.2_Silent_p.F214F	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	219						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		TGGCTGGCTTCGCCAGGCTGT	0.592		NA											16	60					0	0	0	0
LDHD	197257	broad.mit.edu	37	16	75146544	75146544	+	Silent	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr16:75146544G>C	uc002fdm.2	-	10	1361	c.1314C>G	c.(1312-1314)GCC>GCG	p.A438A	LDHD_uc002fdn.2_Silent_p.A415A	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	438							D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						CCAGTTCCTCGGCGTCATCAG	0.607		NA											13	39					0	0	0	0
ZZEF1	23140	broad.mit.edu	37	17	3966057	3966057	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:3966057C>T	uc002fxe.2	-	30	4937	c.4873G>A	c.(4873-4875)GAT>AAT	p.D1625N	ZZEF1_uc002fxh.2_5'UTR|ZZEF1_uc002fxi.2_5'UTR|ZZEF1_uc002fxj.1_Missense_Mutation_p.D238N	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1625							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTGGTAAAATCTTTCTGACAG	0.413		NA											4	7					0	0	0	0
TNK1	8711	broad.mit.edu	37	17	7290420	7290420	+	Silent	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:7290420A>G	uc002ggi.3	+	9	1519	c.1359A>G	c.(1357-1359)CCA>CCG	p.P453P	TNK1_uc002ggj.3_Silent_p.P448P|TNK1_uc010cmf.2_RNA|TNK1_uc002ggk.3_Silent_p.P50P	NM_003985	NP_003976	Q13470	TNK1_HUMAN	tyrosine kinase, non-receptor, 1	453					protein autophosphorylation	membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(122;0.157)				CCACCCGTCCAGTCCACAGAG	0.627		NA											8	21					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7576853	7576853	+	Missense_Mutation	SNP	C	C	A	rs11575996		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:7576853C>A	uc002gim.2	-	9	1187	c.993G>T	c.(991-993)CAG>CAT	p.Q331H	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.Q331H|TP53_uc010cne.1_RNA|TP53_uc010cnf.1_Missense_Mutation_p.Q199H|TP53_uc010cng.1_Missense_Mutation_p.Q199H|TP53_uc002gii.1_Missense_Mutation_p.Q199H|TP53_uc010cnh.1_Missense_Mutation_p.Q331H|TP53_uc010cni.1_Missense_Mutation_p.Q331H|TP53_uc002gij.2_Missense_Mutation_p.Q331H	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	331	Oligomerization.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.|Interaction with HIPK2.		Q -> R (in sporadic cancers; somatic mutation).|Q -> P (in sporadic cancers; somatic mutation).|Q -> H (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Q331*(14)|p.0?(7)|p.Q331P(3)|p.Q331fs*6(1)|p.I332fs*49(1)|p.?(1)|p.Q331Q(1)|p.Q331R(1)|p.Q331H(1)|p.Q331fs*14(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GACTTAGTACCTGAAGGGTGA	0.453		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			22	42					3.62e-10	5.48e-10	1	0
TP53	7157	broad.mit.edu	37	17	7577535	7577535	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:7577535C>A	uc002gim.2	-	7	940	c.746G>T	c.(745-747)AGG>ATG	p.R249M	TP53_uc002gig.1_Missense_Mutation_p.R249M|TP53_uc002gih.2_Missense_Mutation_p.R249M|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R117M|TP53_uc010cng.1_Missense_Mutation_p.R117M|TP53_uc002gii.1_Missense_Mutation_p.R117M|TP53_uc010cnh.1_Missense_Mutation_p.R249M|TP53_uc010cni.1_Missense_Mutation_p.R249M|TP53_uc002gij.2_Missense_Mutation_p.R249M|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R156M|TP53_uc002gio.2_Missense_Mutation_p.R117M	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	249	|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> W (in sporadic cancers; somatic mutation).|RP -> SA (in a sporadic cancer; somatic mutation).|RP -> SS (in sporadic cancers; somatic mutation).|R -> T (in sporadic cancers; somatic mutation).|R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> I (in a sporadic cancer; somatic mutation).|R -> M (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> K (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R249S(303)|p.R249M(25)|p.R249G(24)|p.R249W(23)|p.R249T(16)|p.R249K(14)|p.0?(7)|p.R249R(6)|p.R249fs*96(6)|p.M246_P250delMNRRP(2)|p.R249fs*14(2)|p.R248_P250delRRP(1)|p.R249_P250delRP(1)|p.R249_P250insR(1)|p.R249_P250>SS(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R249fs*19(1)|p.R249_T256delRPILTIIT(1)|p.R249fs*15(1)|p.R249_I251delRPI(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GAGGATGGGCCTCCGGTTCAT	0.567		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			22	31					1.85e-09	2.75e-09	1	0
TP53	7157	broad.mit.edu	37	17	7577547	7577547	+	Missense_Mutation	SNP	C	C	T	rs121912656		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:7577547C>T	uc002gim.2	-	7	928	c.734G>A	c.(733-735)GGC>GAC	p.G245D	TP53_uc002gig.1_Missense_Mutation_p.G245D|TP53_uc002gih.2_Missense_Mutation_p.G245D|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G113D|TP53_uc010cng.1_Missense_Mutation_p.G113D|TP53_uc002gii.1_Missense_Mutation_p.G113D|TP53_uc010cnh.1_Missense_Mutation_p.G245D|TP53_uc010cni.1_Missense_Mutation_p.G245D|TP53_uc002gij.2_Missense_Mutation_p.G245D|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.G152D|TP53_uc002gio.2_Missense_Mutation_p.G113D	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	245	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		G -> N (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> A (in sporadic cancers; somatic mutation).|G -> V (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> R (in sporadic cancers; somatic mutation).|G -> E (in a sporadic cancer; somatic mutation).|G -> D (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> H (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|G -> L (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G245S(274)|p.G245D(93)|p.G245V(50)|p.G245C(47)|p.G245R(10)|p.G245A(8)|p.0?(7)|p.G245G(3)|p.G245fs*2(3)|p.G245N(2)|p.G245H(1)|p.G245L(1)|p.G244fs*17(1)|p.G245F(1)|p.G245E(1)|p.C242_M246>L(1)|p.C238_M246delCNSSCMGGM(1)|p.G245del(1)|p.C242fs*98(1)|p.G245fs*22(1)|p.M243fs*18(1)|p.S241_G245delSCMGG(1)|p.G245fs*14(1)|p.G245fs*17(1)|p.G245fs*16(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCGGTTCATGCCGCCCATGCA	0.582		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			14	45					0	0	0	0
DNAH2	146754	broad.mit.edu	37	17	7727960	7727960	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:7727960G>A	uc002giu.1	+	76	11782	c.11768G>A	c.(11767-11769)CGC>CAC	p.R3923H	DNAH2_uc010cnm.1_Missense_Mutation_p.R861H	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3923	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCATCCTTCCGCCTCTGGCTC	0.552		NA											10	78					0	0	0	0
GUCY2D	3000	broad.mit.edu	37	17	7918083	7918083	+	Splice_Site	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:7918083G>T	uc002gjt.2	+	13	2650	c.2576_splice	c.e13+1	p.P859_splice		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)						intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				TGCTGCCTCCGTGGGTGCCAG	0.627		NA											9	17					3.1e-07	4.45e-07	1	0
NCOR1	9611	broad.mit.edu	37	17	15942772	15942772	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:15942772C>G	uc002gpo.2	-	44	7170	c.6930G>C	c.(6928-6930)GAG>GAC	p.E2310D	NCOR1_uc002gpn.2_Missense_Mutation_p.E2207D|NCOR1_uc002gpl.2_Missense_Mutation_p.E325D|NCOR1_uc002gpm.2_Missense_Mutation_p.E830D|NCOR1_uc010vwb.1_Missense_Mutation_p.E894D|NCOR1_uc010coy.2_Missense_Mutation_p.E1218D	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	2310	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GGTCCCCTTCCTCTCTTCGTG	0.468		NA											10	35					0	0	0	0
ZNF624	57547	broad.mit.edu	37	17	16550702	16550702	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:16550702C>G	uc010cpi.1	-	3	177	c.94G>C	c.(94-96)GAA>CAA	p.E32Q		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	32					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TGGGTAACTTCAGGGCTCTGA	0.269		NA											37	50					0	0	0	0
MED24	9862	broad.mit.edu	37	17	38189629	38189629	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:38189629G>T	uc002htt.2	-	7	953	c.640C>A	c.(640-642)CAG>AAG	p.Q214K	MED24_uc010wes.1_Missense_Mutation_p.Q74K|MED24_uc010wet.1_RNA|MED24_uc002hts.2_Missense_Mutation_p.Q239K|MED24_uc002htu.2_Missense_Mutation_p.Q201K|MED24_uc010cwn.2_Missense_Mutation_p.Q201K|MED24_uc010weu.1_Missense_Mutation_p.Q124K|MED24_uc010wev.1_Missense_Mutation_p.Q164K|MED24_uc010wew.1_Missense_Mutation_p.Q143K|MED24_uc010wex.1_Intron|MED24_uc010wez.1_Missense_Mutation_p.Q55K|MED24_uc010wfa.1_Missense_Mutation_p.Q183K|MED24_uc010wfb.1_Missense_Mutation_p.Q226K|MED24_uc010wfc.1_Missense_Mutation_p.Q170K	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1	214					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					TGCTCGGCCTGACTCCGGAGC	0.592		NA											10	3					9.7e-10	1.45e-09	1	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39262084	39262084	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:39262084C>G	uc010wfp.1	+	1	444	c.444C>G	c.(442-444)AAC>AAG	p.N148K		NM_001146041	NP_001139513	Q9BYQ8	KRA49_HUMAN	keratin associated protein 4-9	148	29 X 5 AA repeats of C-C-[RQVHIEK]- [SPTR]-[VSTQCRNP].|24.					keratin filament					0						gccagcccaactgctgccgcc	0.104		NA											9	13					0	0	0	0
KRT15	3866	broad.mit.edu	37	17	39673185	39673185	+	Missense_Mutation	SNP	C	C	T	rs138271368		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:39673185C>T	uc002hwy.2	-	3	804	c.613G>A	c.(613-615)GTT>ATT	p.V205I	KRT15_uc002hwz.2_Missense_Mutation_p.V107I|KRT15_uc002hxa.2_Missense_Mutation_p.V40I|KRT15_uc002hxb.1_Missense_Mutation_p.V40I	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	205	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				TCAGCCTCAACGCCCTGGCGC	0.612		NA											19	65					0	0	0	0
HSD17B1	3292	broad.mit.edu	37	17	40705593	40705593	+	Silent	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:40705593T>C	uc002hzw.2	+	3	1370	c.402T>C	c.(400-402)GGT>GGC	p.G134G	HSD17B1_uc002hzx.2_Silent_p.G134G|HSD17B1_uc010wgm.1_RNA|uc002hzy.2_5'UTR|HSD17B1_uc010cyi.2_Silent_p.G165G	NM_000413	NP_000404	P14061	DHB1_HUMAN	hydroxysteroid (17-beta) dehydrogenase 1	134					estrogen biosynthetic process	cytosol	binding|estradiol 17-beta-dehydrogenase activity				0		all_cancers(22;5.59e-08)|all_epithelial(22;7e-07)|Ovarian(249;0.0261)		BRCA - Breast invasive adenocarcinoma(366;0.129)	NADH(DB00157)	AGAGGCGCGGTTCGGGACGCG	0.637		NA											21	42					0	0	0	0
MED13	9969	broad.mit.edu	37	17	60040139	60040139	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:60040139G>T	uc002izo.2	-	21	5115	c.5038C>A	c.(5038-5040)CAT>AAT	p.H1680N		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	1680					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CTCTTGATATGAGGAGGAAGA	0.368		NA											36	89					1.3e-30	2.25e-30	1	0
SCN4A	6329	broad.mit.edu	37	17	62021165	62021165	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:62021165A>T	uc002jds.1	-	22	4035	c.3958T>A	c.(3958-3960)TAT>AAT	p.Y1320N		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1320					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	ATGGCGTTATAGTATTTCTTC	0.502		NA											13	19					0	0	0	0
ERN1	2081	broad.mit.edu	37	17	62135335	62135335	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:62135335G>C	uc002jdz.2	-	12	1338	c.1225C>G	c.(1225-1227)CAG>GAG	p.Q409E		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	409	Lumenal (Potential).				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						TCTGAAGTCTGGTCAACCAGG	0.552		NA											5	6					0	0	0	0
NUP85	79902	broad.mit.edu	37	17	73214330	73214330	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:73214330G>A	uc002jng.1	+	7	786	c.526G>A	c.(526-528)GAG>AAG	p.E176K	NUP85_uc010dgd.1_Missense_Mutation_p.E176K|NUP85_uc010wrv.1_Missense_Mutation_p.E130K	NM_024844	NP_079120	Q9BW27	NUP85_HUMAN	nucleoporin 85	176					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|nuclear membrane|Nup107-160 complex|spindle	protein binding			ovary(1)	1	all_lung(278;0.14)|Lung NSC(278;0.168)		all cancers(21;3.45e-06)			CCATGTGTGCGAGGTGGACAG	0.572		NA											7	64					0	0	0	0
CANT1	124583	broad.mit.edu	37	17	76993210	76993211	+	Missense_Mutation	DNP	CA	CA	AT			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:76993210_76993211CA>AT	uc002jwn.2	-	4	933_934	c.494_495TG>AT	c.(493-495)ATG>AAT	p.M165N	CANT1_uc002jwk.2_Missense_Mutation_p.M165N|CANT1_uc002jwj.2_Missense_Mutation_p.M165N|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	165	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			CGGATAGCTCCATGCCTCTCCC	0.599		NA	T	ETV4	prostate								39	97					0	0	0	0
EPB41L3	23136	broad.mit.edu	37	18	5416002	5416002	+	Missense_Mutation	SNP	G	G	A	rs150101312		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr18:5416002G>A	uc002kmt.1	-	13	1968	c.1882C>T	c.(1882-1884)CGC>TGC	p.R628C	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Intron|EPB41L3_uc010dkq.1_Intron|EPB41L3_uc002kms.1_Intron|EPB41L3_uc010wze.1_Intron|EPB41L3_uc010wzf.1_Intron|EPB41L3_uc010wzg.1_Intron|EPB41L3_uc010dkr.2_Intron	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	628	Spectrin--actin-binding (Potential).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GACGGTGAGCGGATCGGGAGG	0.537		NA											10	89					0	0	0	0
MC5R	4161	broad.mit.edu	37	18	13826521	13826521	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr18:13826521C>T	uc010xaf.1	+	1	757	c.757C>T	c.(757-759)CCG>TCG	p.P253S		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	253	Helical; Name=6; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						GTGCTGGGCCCCGTTCTTCCT	0.577		NA											50	64					0	0	0	0
CDH2	1000	broad.mit.edu	37	18	25572629	25572629	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr18:25572629G>C	uc002kwg.2	-	9	1793	c.1334C>G	c.(1333-1335)ACC>AGC	p.T445S	CDH2_uc010xbn.1_Missense_Mutation_p.T414S	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	445	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						TTTGACCACGGTGACTAACCC	0.522		NA											26	57					0	0	0	0
C18orf10	25941	broad.mit.edu	37	18	34376776	34376776	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr18:34376776G>A	uc002kzw.1	-	7	1323	c.895C>T	c.(895-897)CGG>TGG	p.R299W	C18orf10_uc002kzv.1_Intron|C18orf10_uc010xci.1_Missense_Mutation_p.R264W|C18orf10_uc002kzx.1_Missense_Mutation_p.R256W	NM_015476	NP_056291	Q68CL5	TPGS2_HUMAN	tubulin polyglutamylase complex subunit 2	299						cytoplasm|microtubule				skin(1)	1						GCTCACTTCCGGGTGGGGTTT	0.617		NA											11	98					0	0	0	0
SETBP1	26040	broad.mit.edu	37	18	42531907	42531907	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr18:42531907G>T	uc010dni.2	+	4	2898	c.2602G>T	c.(2602-2604)GAC>TAC	p.D868Y		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	868			D -> N (in SGMFS).|D -> A (in SGMFS).			nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GATCCCCAGCGACAGCGGCAT	0.552		NA							Schinzel-Giedion_syndrome				39	22					7.53e-24	1.29e-23	1	0
ZNF236	7776	broad.mit.edu	37	18	74625839	74625839	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr18:74625839G>A	uc002lmi.2	+	18	3238	c.3040G>A	c.(3040-3042)GAG>AAG	p.E1014K	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	1014	C2H2-type 19.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		CAAGTCCCACGAGAAGACACA	0.413		NA											21	26					0	0	0	0
DOT1L	84444	broad.mit.edu	37	19	2216357	2216357	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:2216357C>T	uc002lvb.3	+	20	2037	c.2001C>T	c.(1999-2001)GAC>GAT	p.D667D	DOT1L_uc002lvc.1_Translation_Start_Site|uc002lvd.1_5'Flank|DOT1L_uc002lve.1_Translation_Start_Site	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	667						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGCCTGACGACGCCCTGTCCC	0.657		NA											17	28					0	0	0	0
TLE6	79816	broad.mit.edu	37	19	2993528	2993528	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:2993528C>T	uc002lwu.2	+	14	1516	c.1116C>T	c.(1114-1116)CAC>CAT	p.H372H	TLE6_uc002lwt.2_Silent_p.H495H|TLE6_uc010dtg.2_Silent_p.H495H|TLE6_uc002lwv.2_Silent_p.H276H	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	372	WD 5.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCAGCGGCACATGGTGGGGC	0.632		NA											11	32					0	0	0	0
ATCAY	85300	broad.mit.edu	37	19	3907911	3907911	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:3907911C>A	uc002lyy.3	+	5	968	c.538C>A	c.(538-540)CAC>AAC	p.H180N	ATCAY_uc010xhz.1_Missense_Mutation_p.H186N|ATCAY_uc010dts.2_5'Flank	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	180	CRAL-TRIO.				transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		AGTGGTCACCCACGGAGGTGA	0.667		NA											7	16					0.00448238	0.00586905	1	0
LONP1	9361	broad.mit.edu	37	19	5711885	5711885	+	Missense_Mutation	SNP	G	G	A	rs116591583	byFrequency	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:5711885G>A	uc002mcx.2	-	4	800	c.767C>T	c.(766-768)GCG>GTG	p.A256V	LONP1_uc002mcy.2_Missense_Mutation_p.A192V|LONP1_uc010duh.2_5'UTR|LONP1_uc010dui.2_Missense_Mutation_p.A256V|LONP1_uc002mcz.2_Missense_Mutation_p.A60V	NM_004793	NP_004784	P36776	LONM_HUMAN	mitochondrial lon peptidase 1 precursor	256	Lon.				cellular chaperone-mediated protein complex assembly|cellular response to oxidative stress|misfolded or incompletely synthesized protein catabolic process|mitochondrial DNA metabolic process|oxidation-dependent protein catabolic process|protein homooligomerization|response to hypoxia	mitochondrial nucleoid	ADP binding|ATP binding|ATP-dependent peptidase activity|DNA polymerase binding|G-quadruplex DNA binding|mitochondrial heavy strand promoter anti-sense binding|mitochondrial light strand promoter anti-sense binding|sequence-specific DNA binding|serine-type endopeptidase activity|single-stranded DNA binding|single-stranded RNA binding				0						CGCCAGCTCCGCCGGGTGCCT	0.667		NA											18	43					0	0	0	0
EMR1	2015	broad.mit.edu	37	19	6913740	6913740	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:6913740C>T	uc002mfw.2	+	11	1237	c.1199C>T	c.(1198-1200)TCC>TTC	p.S400F	EMR1_uc010dvc.2_Missense_Mutation_p.S400F|EMR1_uc010dvb.2_Missense_Mutation_p.S348F|EMR1_uc010xji.1_Missense_Mutation_p.S259F|EMR1_uc010xjj.1_Missense_Mutation_p.S223F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	400	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					GAGACGTCCTCCCTGGCCACA	0.463		NA											51	74					0	0	0	0
PRAM1	84106	broad.mit.edu	37	19	8555792	8555792	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:8555792C>T	uc002mkd.2	-	6	1742	c.1722G>A	c.(1720-1722)AGG>AGA	p.R574R	PRAM1_uc002mkc.2_Silent_p.R573R	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	622	SH3.						lipid binding|protein binding				0						TCCGGAACTCCCTCTCGGCCT	0.592		NA											10	258					0	0	0	0
MYO1F	4542	broad.mit.edu	37	19	8616943	8616943	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:8616943C>G	uc002mkg.2	-	7	724	c.610G>C	c.(610-612)GAG>CAG	p.E204Q	MYO1F_uc002mkh.2_Missense_Mutation_p.E204Q|MYO1F_uc010xkf.1_Missense_Mutation_p.E204Q	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	204	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						AAGTTCCTCTCATTTTCATTT	0.572		NA											26	48					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	8987085	8987085	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:8987085G>A	uc002mkp.2	-	69	42109	c.41905C>T	c.(41905-41907)CTG>TTG	p.L13969L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.L786L|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGCACCCAGGCTGCTCCTC	0.602		NA											3	10					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9047583	9047583	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:9047583A>G	uc002mkp.2	-	5	34252	c.34048T>C	c.(34048-34050)TGG>CGG	p.W11350R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11352	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGTAACCCATGAGGCTGTT	0.507		NA											75	174					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9071740	9071740	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:9071740G>T	uc002mkp.2	-	3	15910	c.15706C>A	c.(15706-15708)CCA>ACA	p.P5236T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5238	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATGGTCTGGGGTGGAAATT	0.473		NA											36	77					9.66e-10	1.45e-09	1	0
ZNF560	147741	broad.mit.edu	37	19	9577625	9577625	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:9577625A>T	uc002mlp.1	-	10	2208	c.1998T>A	c.(1996-1998)AGT>AGA	p.S666R	ZNF560_uc010dwr.1_Missense_Mutation_p.S560R	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	666	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CACAAGACCTACTGTAAGCTT	0.388		NA											50	76					0	0	0	0
ZNF426	79088	broad.mit.edu	37	19	9639320	9639320	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:9639320C>A	uc002mlq.2	-	8	1665	c.1401G>T	c.(1399-1401)ATG>ATT	p.M467I	ZNF426_uc010dws.2_Missense_Mutation_p.M429I	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	467	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGTGGATTCGCATGTGAATTT	0.423		NA											19	56					0.00121646	0.00160932	1	0
DNM2	1785	broad.mit.edu	37	19	10893759	10893759	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:10893759G>T	uc002mps.1	+	6	976	c.812G>T	c.(811-813)CGC>CTC	p.R271L	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Missense_Mutation_p.R271L|DNM2_uc002mpv.1_Missense_Mutation_p.R271L|DNM2_uc002mpu.1_Missense_Mutation_p.R271L|DNM2_uc010dxl.1_Missense_Mutation_p.R271L|DNM2_uc002mpw.2_Missense_Mutation_p.R4L	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	271					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			ATGGCCGACCGCATGGGCACG	0.577		NA											19	40					1.45e-14	2.31e-14	1	0
MAN2B1	4125	broad.mit.edu	37	19	12767762	12767762	+	Splice_Site	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:12767762C>G	uc002mub.2	-	12	1603	c.1527_splice	c.e12+1	p.R509_splice	MAN2B1_uc010dyv.1_Splice_Site_p.R508_splice	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1						protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						TCCCGGCTCACGCGCGCCGCC	0.572		NA											8	12					0	0	0	0
ASNA1	439	broad.mit.edu	37	19	12848400	12848400	+	Silent	SNP	A	A	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:12848400A>C	uc002muv.2	+	1	95	c.81A>C	c.(79-81)ACA>ACC	p.T27T	C19orf43_uc002muu.2_5'Flank|ASNA1_uc002muw.2_Silent_p.T27T	NM_004317	NP_004308	O43681	ASNA_HUMAN	arsA arsenite transporter, ATP-binding, homolog	27					response to arsenic-containing substance	endoplasmic reticulum|nucleolus|soluble fraction	arsenite-transporting ATPase activity|ATP binding|metal ion binding			ovary(2)	2					Adenosine triphosphate(DB00171)	TGGAGCCTACACTTAGCAACA	0.627		NA											7	14					0	0	0	0
C19orf44	84167	broad.mit.edu	37	19	16611661	16611661	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:16611661G>A	uc002neh.1	+	2	131	c.58G>A	c.(58-60)GAT>AAT	p.D20N	MED26_uc002nee.2_Intron|C19orf44_uc002nef.1_Missense_Mutation_p.D20N|C19orf44_uc002neg.2_Missense_Mutation_p.D20N|C19orf44_uc010eai.1_RNA	NM_032207	NP_115583	Q9H6X5	CS044_HUMAN	hypothetical protein LOC84167	20											0						TGACTTCAGTGATGTTTCCTT	0.423		NA											41	83					0	0	0	0
GLT25D1	79709	broad.mit.edu	37	19	17688840	17688840	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:17688840G>A	uc002nhc.1	+	9	1220	c.1208G>A	c.(1207-1209)CGG>CAG	p.R403Q	GLT25D1_uc010eax.1_Missense_Mutation_p.R131Q|GLT25D1_uc010eay.1_5'Flank	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	403					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						TACCACGGCCGGCCCCTCACC	0.632		NA											11	47					0	0	0	0
KIAA1683	80726	broad.mit.edu	37	19	18368176	18368176	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:18368176G>A	uc002nin.2	-	4	3573	c.3357C>T	c.(3355-3357)GCC>GCT	p.A1119A	PDE4C_uc002nil.3_5'Flank|KIAA1683_uc010ebn.2_Silent_p.A1306A|KIAA1683_uc010xqe.1_Silent_p.A1073A|KIAA1683_uc010xqf.1_RNA	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	1119	IQ 5.					mitochondrion				ovary(2)	2						CGGACTGGATGGCTGTGGCCG	0.652		NA											19	40					0	0	0	0
ARMC6	93436	broad.mit.edu	37	19	19166617	19166617	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:19166617C>A	uc002nld.2	+	8	1521	c.1173C>A	c.(1171-1173)TGC>TGA	p.C391*	ARMC6_uc002nlc.2_Nonsense_Mutation_p.C366*|ARMC6_uc010xql.1_Nonsense_Mutation_p.C298*|ARMC6_uc002nle.2_Nonsense_Mutation_p.C366*|ARMC6_uc010xqm.1_Nonsense_Mutation_p.C391*	NM_033415	NP_219483	Q6NXE6	ARMC6_HUMAN	armadillo repeat containing 6	391	ARM 4.						protein binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.66e-06)|Epithelial(12;0.000391)			AGCAGAGCTGCGCGGCCCTGT	0.642		NA											59	122					3.79e-19	6.33e-19	1	0
ZNF676	163223	broad.mit.edu	37	19	22364105	22364105	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:22364105C>G	uc002nqs.1	-	3	732	c.414G>C	c.(412-414)GAG>GAC	p.E138D		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	138					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCAAACCTTTCTCTCCAGTAT	0.323		NA											11	121					0	0	0	0
ZFP14	57677	broad.mit.edu	37	19	36832353	36832353	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:36832353G>T	uc002odx.1	-	4	468	c.375C>A	c.(373-375)TGC>TGA	p.C125*	ZFP14_uc010xtd.1_Nonsense_Mutation_p.C126*|ZFP14_uc010eex.1_Nonsense_Mutation_p.C125*	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					TCTTGCTTTTGCATTCCCAAT	0.343		NA											15	72					1.37e-15	2.21e-15	1	0
ZNF260	339324	broad.mit.edu	37	19	37005104	37005104	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:37005104G>A	uc002oee.1	-	4	1881	c.1037C>T	c.(1036-1038)TCT>TTT	p.S346F	ZNF260_uc002oed.1_Missense_Mutation_p.S343F|ZNF260_uc010eey.1_Missense_Mutation_p.S343F|ZNF260_uc002oef.1_Missense_Mutation_p.S343F	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	346	C2H2-type 11.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					CACAGTAAGAGATGAGCTTTG	0.423		NA											12	37					0	0	0	0
CRX	1406	broad.mit.edu	37	19	48342676	48342676	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:48342676A>T	uc002phq.3	+	4	556	c.352A>T	c.(352-354)AAG>TAG	p.K118*		NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	118					organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		CCGGCCTGCCAAGAGGAAGGC	0.537		NA											35	24					0	0	0	0
GYS1	2997	broad.mit.edu	37	19	49477910	49477910	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:49477910G>T	uc002plp.2	-	11	1630	c.1389C>A	c.(1387-1389)ATC>ATA	p.I463I	GYS1_uc010xzy.1_Silent_p.I96I|GYS1_uc010emm.2_Silent_p.I399I|GYS1_uc010xzz.1_Silent_p.I383I|GYS1_uc010yaa.1_RNA	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	463					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		TGAAGAGGCCGATTCGGCGGA	0.612		NA											12	7					7.04e-09	1.04e-08	1	0
ZNF611	81856	broad.mit.edu	37	19	53209368	53209368	+	Missense_Mutation	SNP	G	G	A	rs146528210		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:53209368G>A	uc002pzz.2	-	7	1257	c.940C>T	c.(940-942)CGT>TGT	p.R314C	ZNF611_uc010eqc.2_Missense_Mutation_p.R244C|ZNF611_uc010ydo.1_Missense_Mutation_p.R244C|ZNF611_uc010ydr.1_Missense_Mutation_p.R245C|ZNF611_uc010ydp.1_Missense_Mutation_p.R314C|ZNF611_uc010ydq.1_Missense_Mutation_p.R314C|ZNF611_uc002qaa.3_Missense_Mutation_p.R244C	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		CAATTGTAACGTTTTACTCCA	0.398		NA											5	77					0	0	0	0
NLRP12	91662	broad.mit.edu	37	19	54301518	54301518	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:54301518G>A	uc002qch.3	-	8	3126	c.2906C>T	c.(2905-2907)GCC>GTC	p.A969V	NLRP12_uc010eqw.2_Intron|NLRP12_uc002qci.3_Intron|NLRP12_uc002qcj.3_Missense_Mutation_p.A970V|NLRP12_uc002qck.3_Intron|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	969					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GAGTCTGCAGGCGGGATGTTG	0.582		NA											17	16					0	0	0	0
PRKCG	5582	broad.mit.edu	37	19	54401709	54401709	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:54401709C>G	uc002qcq.1	+	11	1390	c.1108C>G	c.(1108-1110)CGC>GGC	p.R370G	PRKCG_uc010yef.1_3'UTR|PRKCG_uc010yeg.1_Missense_Mutation_p.R370G|PRKCG_uc010yeh.1_Missense_Mutation_p.R257G	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	370	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GCTGGCCGAGCGCAGGGGCTC	0.577		NA											16	18					0	0	0	0
LILRB2	10288	broad.mit.edu	37	19	54779807	54779807	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:54779807G>A	uc002qfb.2	-	13	1914	c.1648C>T	c.(1648-1650)CGG>TGG	p.R550W	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_3'UTR|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.R549W|LILRB2_uc010yet.1_Missense_Mutation_p.R434W	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	550	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGTCTCACCCGAGTGTCCATC	0.622		NA											55	59					0	0	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55378058	55378058	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:55378058C>A	uc002qhl.3	+	9	1303	c.1240C>A	c.(1240-1242)CCT>ACT	p.P414T	KIR3DL2_uc010esh.2_Missense_Mutation_p.P397T|KIR3DL2_uc002qho.3_Missense_Mutation_p.P414T			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	414	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		AATCAGTCGCCCTTCTCAGAG	0.522		NA											114	97					9.5e-49	1.69e-48	1	0
ZNF274	10782	broad.mit.edu	37	19	58718244	58718244	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:58718244G>A	uc002qrq.1	+	5	873	c.414G>A	c.(412-414)CTG>CTA	p.L138L	ZNF274_uc010yhu.1_RNA|ZNF274_uc010yhv.1_RNA|ZNF274_uc002qrr.1_Silent_p.L106L|ZNF274_uc002qrs.1_Silent_p.L33L|ZNF274_uc010eum.1_5'UTR	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	138					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		ATGGAAGCCTGAGTGCAGATG	0.577		NA											4	15					0	0	0	0
GREB1	9687	broad.mit.edu	37	2	11750844	11750844	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:11750844G>T	uc002rbk.1	+	18	2997	c.2697G>T	c.(2695-2697)AGG>AGT	p.R899S	GREB1_uc002rbo.1_Missense_Mutation_p.R533S|GREB1_uc002rbp.1_5'Flank	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	899						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CGGTGATCAGGACCTTTGTTC	0.642		NA											13	40					1.58e-08	2.32e-08	1	0
ATAD2B	54454	broad.mit.edu	37	2	23980963	23980963	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:23980963G>A	uc002rek.3	-	25	3697	c.3403C>T	c.(3403-3405)CGG>TGG	p.R1135W	ATAD2B_uc010yki.1_RNA|ATAD2B_uc002rei.3_Missense_Mutation_p.R375W|ATAD2B_uc002rej.3_Missense_Mutation_p.R303W	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	1135							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GATTTTCTCCGAACCCGAACT	0.323		NA											9	43					0	0	0	0
MFSD2B	388931	broad.mit.edu	37	2	24247090	24247090	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:24247090C>T	uc002reo.1	+	13	1453	c.1439C>T	c.(1438-1440)TCC>TTC	p.S480F		NM_001080473	NP_001073942	A6NFX1	MFS2B_HUMAN	major facilitator superfamily domain containing	480					transport	integral to membrane				ovary(2)	2						ATGGTCGGCTCCACTCCAAAG	0.647		NA											3	16					0	0	0	0
THADA	63892	broad.mit.edu	37	2	43801646	43801646	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:43801646C>G	uc002rsw.3	-	11	1910	c.1558G>C	c.(1558-1560)GAC>CAC	p.D520H	THADA_uc002rsx.3_Missense_Mutation_p.D520H|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.D230H|THADA_uc002rta.2_Missense_Mutation_p.D230H|THADA_uc002rtb.1_Missense_Mutation_p.D520H|THADA_uc002rtc.3_Missense_Mutation_p.D520H|THADA_uc002rtd.2_Missense_Mutation_p.D520H	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	520							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TGCCACTGGTCAATCCAAGAA	0.383		NA											11	53					0	0	0	0
LHCGR	3973	broad.mit.edu	37	2	48914940	48914940	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:48914940C>A	uc002rwu.3	-	11	2066	c.1996G>T	c.(1996-1998)GGC>TGC	p.G666C	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	666	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	CCAGTGAAGCCATTTTTGCAG	0.428		NA							Familial_Male-Limited_Precocious_Puberty				80	66					7.24e-40	1.28e-39	1	0
FSHR	2492	broad.mit.edu	37	2	49189919	49189919	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:49189919C>T	uc002rww.2	-	10	2115	c.2041G>A	c.(2041-2043)GGT>AGT	p.G681S	FSHR_uc002rwx.2_Missense_Mutation_p.G619S|FSHR_uc010fbn.2_Missense_Mutation_p.G655S	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	681	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	TAAGTGGAACCACTGGTGACT	0.378		NA							Gonadal_Dysgenesis_46_XX				6	109					0	0	0	0
NRXN1	9378	broad.mit.edu	37	2	50573944	50573944	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:50573944C>A	uc010fbp.2	-	1	951	c.144G>T	c.(142-144)GCG>GCT	p.A48A	NRXN1_uc002rxb.3_Intron|NRXN1_uc010fbq.2_Intron|NRXN1_uc002rxe.3_Intron|NRXN1_uc002rxc.1_Intron	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	48					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ATGCCCCCCACGCCACTCCTA	0.507		NA											19	13					5.35e-11	8.2e-11	1	0
USP34	9736	broad.mit.edu	37	2	61566804	61566804	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:61566804T>C	uc002sbe.2	-	17	2535	c.2513A>G	c.(2512-2514)CAT>CGT	p.H838R		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	838					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TTGATGTTTATGAACTACAGG	0.318		NA											15	34					0	0	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88870420	88870420	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:88870420C>A	uc002stc.3	-	14	3159	c.2957G>T	c.(2956-2958)GGG>GTG	p.G986V		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	986	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CAGTTTGGTCCCTACTTGTCC	0.473		NA											68	84					2.05e-36	3.6e-36	1	0
SNRNP200	23020	broad.mit.edu	37	2	96944433	96944433	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:96944433G>C	uc002svu.2	-	38	5426	c.5340C>G	c.(5338-5340)CAC>CAG	p.H1780Q	SNRNP200_uc002svt.2_Missense_Mutation_p.H390Q|SNRNP200_uc010yuj.1_RNA	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1780						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GGTCCGACAAGTGACGATGGG	0.577		NA											27	51					0	0	0	0
GLI2	2736	broad.mit.edu	37	2	121740372	121740372	+	Silent	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:121740372T>C	uc010flp.2	+	10	1629	c.1599T>C	c.(1597-1599)TAT>TAC	p.Y533Y	GLI2_uc002tmq.1_Silent_p.Y205Y|GLI2_uc002tmr.1_Silent_p.Y188Y|GLI2_uc002tmt.3_Silent_p.Y205Y|GLI2_uc002tmu.3_Silent_p.Y188Y|GLI2_uc002tmw.1_Silent_p.Y516Y	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	533	C2H2-type 4.				axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				AGAAGCCATATGTGTGTGAGC	0.617		NA											4	39					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141201897	141201897	+	Splice_Site	SNP	A	A	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:141201897A>C	uc002tvj.1	-	65	11266	c.10294_splice	c.e65+1	p.P3432_splice		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B						protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GAGGTGACTTACGACAGTCTC	0.328		NA								TSP Lung(27;0.18)			60	27					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141232793	141232793	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:141232793G>T	uc002tvj.1	-	60	10511	c.9539C>A	c.(9538-9540)ACA>AAA	p.T3180K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3180	Extracellular (Potential).|LDL-receptor class B 30.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATAATCTATTGTTAGTGCCAT	0.408		NA								TSP Lung(27;0.18)			72	29					1.59e-42	2.81e-42	1	0
SCN1A	6323	broad.mit.edu	37	2	166898884	166898884	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:166898884G>T	uc010zcz.1	-	12	2079	c.2061C>A	c.(2059-2061)CAC>CAA	p.H687Q	SCN1A_uc002udo.3_Missense_Mutation_p.H567Q|SCN1A_uc010fpk.2_Missense_Mutation_p.H539Q	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	698						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCATGGAAACGTGGAAAGAAC	0.358		NA											46	22					1.75e-18	2.89e-18	1	0
XIRP2	129446	broad.mit.edu	37	2	168107605	168107605	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:168107605C>T	uc002udx.2	+	8	9721	c.9703C>T	c.(9703-9705)CCA>TCA	p.P3235S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P3060S|XIRP2_uc010fpq.2_Missense_Mutation_p.P3013S|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3060					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAGGGACTCTCCACCTACAAT	0.438		NA											35	16					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179498188	179498188	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:179498188C>T	uc010zfg.1	-	181	35418	c.35194G>A	c.(35194-35196)GTG>ATG	p.V11732M	TTN_uc010zfh.1_Missense_Mutation_p.V5427M|TTN_uc010zfi.1_Missense_Mutation_p.V5360M|TTN_uc010zfj.1_Missense_Mutation_p.V5235M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12659							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGTCACACACATATTCGCCT	0.413		NA											52	22					0	0	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803233	185803233	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:185803233C>T	uc002uph.2	+	4	3704	c.3110C>T	c.(3109-3111)CCA>CTA	p.P1037L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1037						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TTATTGATCCCACTAGAAAAC	0.413		NA											69	23					0	0	0	0
COL5A2	1290	broad.mit.edu	37	2	189925481	189925481	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:189925481C>A	uc002uqk.2	-	31	2335	c.2060G>T	c.(2059-2061)GGA>GTA	p.G687V	COL5A2_uc010frx.2_Missense_Mutation_p.G263V	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	687					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TCCACCTTCTCCAGGAGGCCC	0.338		NA											29	16					2.22e-23	3.78e-23	1	0
COQ10B	80219	broad.mit.edu	37	2	198334873	198334873	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:198334873G>T	uc002uuh.1	+	4	581	c.527G>T	c.(526-528)AGA>ATA	p.R176I	COQ10B_uc010fsl.1_Missense_Mutation_p.R148I	NM_025147	NP_079423	Q9H8M1	CQ10B_HUMAN	coenzyme Q10 homolog B precursor	176						mitochondrial inner membrane					0			Epithelial(96;0.231)|OV - Ovarian serous cystadenocarcinoma(117;0.246)			GGCTACCCAAGAACTTGTACC	0.358		NA											8	38					5.49e-09	8.11e-09	1	0
SPAG16	79582	broad.mit.edu	37	2	215275038	215275038	+	Nonstop_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:215275038G>C	uc002veq.2	+	16	1987	c.1895G>C	c.(1894-1896)TGA>TCA	p.*632S	SPAG16_uc002ver.2_Nonstop_Mutation_p.*578S|SPAG16_uc010zjk.1_Nonstop_Mutation_p.*538S|VWC2L_uc002vet.2_5'Flank|VWC2L_uc010zjl.1_5'Flank	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	632					cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		ACGTGGTCTTGACCGTCAGCA	0.527		NA											16	68					0	0	0	0
SPHKAP	80309	broad.mit.edu	37	2	228973575	228973575	+	Silent	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:228973575T>A	uc002vpq.2	-	3	266	c.219A>T	c.(217-219)GTA>GTT	p.V73V	SPHKAP_uc002vpp.2_Silent_p.V73V|SPHKAP_uc010zlx.1_Silent_p.V73V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	73						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ACTTGTCTTCTACAAAACCAA	0.468		NA											69	37					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238242092	238242092	+	Splice_Site	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:238242092C>T	uc002vwl.2	-	42	9613	c.9328_splice	c.e42+1	p.D3110_splice	COL6A3_uc002vwo.2_Splice_Site_p.D2904_splice|COL6A3_uc010znj.1_Splice_Site_p.D2503_splice|COL6A3_uc002vwj.2_Splice_Site_p.D491_splice	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor						axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCACAACTCACCTGTTTCAGT	0.448		NA											45	16					0	0	0	0
PASK	23178	broad.mit.edu	37	2	242079332	242079332	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:242079332C>T	uc002wao.1	-	4	660	c.568G>A	c.(568-570)GAC>AAC	p.D190N	PASK_uc010zol.1_Intron|PASK_uc010zom.1_Missense_Mutation_p.D190N|PASK_uc010fzl.1_Missense_Mutation_p.D190N|PASK_uc010zon.1_Intron|PASK_uc002waq.2_Missense_Mutation_p.D190N	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	190	PAS 1.				regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		GCGTGGCCGTCGGCCTCCATG	0.607		NA											5	44					0	0	0	0
TPX2	22974	broad.mit.edu	37	20	30366776	30366776	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr20:30366776A>G	uc002wwp.1	+	10	1741	c.1043A>G	c.(1042-1044)AAG>AGG	p.K348R	TPX2_uc010gdv.1_Missense_Mutation_p.K348R	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	348					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			AGGAGCAAGAAGGATGATATT	0.403		NA											5	31					0	0	0	0
TM9SF4	9777	broad.mit.edu	37	20	30749133	30749133	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr20:30749133G>C	uc002wxj.2	+	17	1979	c.1744G>C	c.(1744-1746)GTC>CTC	p.V582L	TM9SF4_uc010zts.1_Missense_Mutation_p.V489L|TM9SF4_uc002wxk.2_Missense_Mutation_p.V565L|TM9SF4_uc010gdz.2_Missense_Mutation_p.V461L	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	582	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TGCATTCTACGTCCTGGTTTA	0.517		NA											28	45					0	0	0	0
NCOA3	8202	broad.mit.edu	37	20	46281792	46281792	+	Silent	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr20:46281792T>C	uc002xtk.2	+	22	4444	c.4239T>C	c.(4237-4239)TCT>TCC	p.S1413S	NCOA3_uc002xtl.2_Silent_p.S1409S|NCOA3_uc002xtm.2_Silent_p.S1408S|NCOA3_uc002xtn.2_Silent_p.S1412S|NCOA3_uc010zyc.1_Silent_p.S1208S	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1413	Met-rich.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TGCCCATGTCTGGCATGCCTA	0.463		NA											44	49					0	0	0	0
SLC9A8	23315	broad.mit.edu	37	20	48491309	48491309	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr20:48491309C>A	uc002xuv.1	+	11	1236	c.1026C>A	c.(1024-1026)GTC>GTA	p.V342V	SLC9A8_uc010zym.1_Silent_p.V42V|SLC9A8_uc010gic.2_Silent_p.V42V|SLC9A8_uc010gid.2_Intron	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	342						Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			TCTCCCCAGTCACCCAGATCC	0.557		NA											34	81					1.3e-28	2.24e-28	1	0
SLC9A8	23315	broad.mit.edu	37	20	48494548	48494548	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr20:48494548C>T	uc002xuv.1	+	12	1316	c.1106C>T	c.(1105-1107)TCC>TTC	p.S369F	SLC9A8_uc010zym.1_Missense_Mutation_p.S69F|SLC9A8_uc010gic.2_Missense_Mutation_p.S69F|SLC9A8_uc010gid.2_Intron	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	369	Helical; (Potential).					Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			CTTGGCCTGTCCATTTTTAGT	0.294		NA											23	63					0	0	0	0
GMEB2	26205	broad.mit.edu	37	20	62234382	62234382	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr20:62234382T>C	uc002yfp.1	-	3	772	c.293A>G	c.(292-294)GAC>GGC	p.D98G	GMEB2_uc002yfo.1_Missense_Mutation_p.D20G|GMEB2_uc002yfq.1_Missense_Mutation_p.D98G	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	98	SAND.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			GGCTCTGCTGTCTCCACAGGT	0.532		NA											23	88					0	0	0	0
ADAMTS1	9510	broad.mit.edu	37	21	28212319	28212319	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr21:28212319C>A	uc002ymf.2	-	6	2182	c.1727G>T	c.(1726-1728)GGT>GTT	p.G576V		NM_006988	NP_008919	Q9UHI8	ATS1_HUMAN	ADAM metallopeptidase with thrombospondin type 1	576	TSP type-1 1.				integrin-mediated signaling pathway|negative regulation of cell proliferation|proteolysis		heparin binding|zinc ion binding			lung(3)|large_intestine(2)|central_nervous_system(1)	6		Breast(209;0.000962)		Lung(58;0.215)		GACTCCTCCACCGCACGTTCT	0.493		NA											20	76					8.01e-06	1.13e-05	1	0
TIAM1	7074	broad.mit.edu	37	21	32624279	32624279	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr21:32624279T>C	uc002yow.1	-	6	1662	c.1190A>G	c.(1189-1191)AAC>AGC	p.N397S	TIAM1_uc011adk.1_Missense_Mutation_p.N397S|TIAM1_uc011adl.1_Missense_Mutation_p.N397S|TIAM1_uc002yox.1_Missense_Mutation_p.N5S	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	397					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GCTCTCGCTGTTGGTGGTGCT	0.687		NA											18	29					0	0	0	0
GART	2618	broad.mit.edu	37	21	34878305	34878305	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr21:34878305C>T	uc002yrx.2	-	19	2694	c.2559G>A	c.(2557-2559)GCG>GCA	p.A853A	GART_uc002yrz.2_Silent_p.A853A|GART_uc010gmd.2_Silent_p.A515A|GART_uc002yry.2_Silent_p.A853A	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	853	GART.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	CAGCTCTTTCCGCTTTATCTA	0.443		NA											6	55					0	0	0	0
FBXO7	25793	broad.mit.edu	37	22	32894169	32894169	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr22:32894169G>A	uc003amq.2	+	9	1504	c.1221G>A	c.(1219-1221)CCG>CCA	p.P407P	FBXO7_uc003amr.2_Silent_p.P293P|FBXO7_uc003ams.2_Silent_p.P251P|FBXO7_uc003amt.2_Silent_p.P328P|FBXO7_uc003amu.2_Silent_p.P293P|FBXO7_uc003amv.2_Silent_p.P106P	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	407					cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						AAGAATCCCCGAAAGGGCGGT	0.458		NA											30	112					0	0	0	0
NPTXR	23467	broad.mit.edu	37	22	39224292	39224292	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr22:39224292C>G	uc003awk.2	-	2	1004	c.850G>C	c.(850-852)GGG>CGG	p.G284R		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	284	Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					CAGGACCCACCGTGCTCCAGC	0.602		NA											15	37					0	0	0	0
KLHDC7B	113730	broad.mit.edu	37	22	50987660	50987660	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr22:50987660C>T	uc003bmi.2	+	1	1199	c.1065C>T	c.(1063-1065)TAC>TAT	p.Y355Y		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	355	Kelch 2.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TGCACAACTACCTGTTTCTGG	0.647		NA											31	83					0	0	0	0
TGM4	7047	broad.mit.edu	37	3	44951648	44951648	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:44951648G>A	uc003coc.3	+	11	1467	c.1394G>A	c.(1393-1395)AGA>AAA	p.R465K		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	465					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	AGGGAGCACAGACGACCTGTA	0.478		NA											22	30					0	0	0	0
TGM4	7047	broad.mit.edu	37	3	44952515	44952515	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:44952515G>C	uc003coc.3	+	12	1745	c.1672G>C	c.(1672-1674)GAG>CAG	p.E558Q		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	558					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	ATTAGATGATGAGCCAGTTAT	0.458		NA											21	45					0	0	0	0
SACM1L	22908	broad.mit.edu	37	3	45776775	45776775	+	Silent	SNP	C	C	T	rs138504596		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:45776775C>T	uc003cos.2	+	14	1353	c.1149C>T	c.(1147-1149)GGC>GGT	p.G383G	SACM1L_uc011bag.1_Silent_p.G280G|SACM1L_uc011bah.1_Silent_p.G317G|SACM1L_uc003cot.2_Silent_p.G26G	NM_014016	NP_054735	Q9NTJ5	SAC1_HUMAN	suppressor of actin 1	383	SAC.					Golgi apparatus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0102)|KIRC - Kidney renal clear cell carcinoma(197;0.0234)|Kidney(197;0.0277)		ACCAGGAAGGCGTGTTCCGAA	0.438		NA											15	42					0	0	0	0
DHX30	22907	broad.mit.edu	37	3	47887994	47887994	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:47887994G>A	uc003cru.2	+	11	1858	c.1432G>A	c.(1432-1434)GAG>AAG	p.E478K	DHX30_uc003crt.2_Missense_Mutation_p.E439K	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	478	Helicase ATP-binding.					mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		CTATGTGACCGAGGGCCGAGG	0.642		NA											19	45					0	0	0	0
TWF2	11344	broad.mit.edu	37	3	52263103	52263103	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:52263103G>A	uc003ddd.2	-	9	1148	c.997C>T	c.(997-999)CGG>TGG	p.R333W	TLR9_uc003dda.1_5'Flank|TLR9_uc003ddb.2_Intron|TLR9_uc003ddc.1_Intron|TWF2_uc010hmc.2_3'UTR	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	333						cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TTATGGCCCCGCTTGCCCCCT	0.672		NA											9	43					0	0	0	0
TKT	7086	broad.mit.edu	37	3	53260829	53260829	+	Missense_Mutation	SNP	C	C	T	rs148472107		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:53260829C>T	uc003dgo.2	-	13	1749	c.1639G>A	c.(1639-1641)GAC>AAC	p.D547N	TKT_uc003dgp.2_Missense_Mutation_p.D179N|TKT_uc011beo.1_Missense_Mutation_p.D500N|TKT_uc003dgq.2_Missense_Mutation_p.D547N|TKT_uc011beq.1_Missense_Mutation_p.D555N|TKT_uc011ber.1_Missense_Mutation_p.D349N|TKT_uc011bep.1_Missense_Mutation_p.D464N	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	547					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	CGAGCGCTGTCGAGAATGAGT	0.602		NA											7	48					0	0	0	0
ROBO2	6092	broad.mit.edu	37	3	77089985	77089985	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:77089985G>T	uc003dpy.3	+	1	692	c.49G>T	c.(49-51)GTT>TTT	p.V17F	ROBO2_uc003dpz.2_Missense_Mutation_p.V17F|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.V17F	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	17					apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ATTTTTATATGTTCGGGTTGA	0.383		NA											37	32					1.16e-17	1.89e-17	1	0
ZBED2	79413	broad.mit.edu	37	3	111312889	111312889	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:111312889A>T	uc003dxy.2	-	2	1045	c.160T>A	c.(160-162)TTC>ATC	p.F54I	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	54	BED-type.						DNA binding|metal ion binding			skin(1)	1						GCCTCAGAGAACCGGGTGCCC	0.572		NA											25	44					0	0	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069375	114069375	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:114069375G>A	uc003ebi.2	-	4	1730	c.1550C>T	c.(1549-1551)GCG>GTG	p.A517V	ZBTB20_uc003ebj.2_Missense_Mutation_p.A444V|ZBTB20_uc010hqp.2_Missense_Mutation_p.A444V|ZBTB20_uc003ebk.2_Missense_Mutation_p.A444V|ZBTB20_uc003ebl.2_Missense_Mutation_p.A444V|ZBTB20_uc003ebm.2_Missense_Mutation_p.A444V|ZBTB20_uc003ebn.2_Missense_Mutation_p.A444V|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	517				A -> V (in Ref. 1; AAG28340).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		GCCACTGCCCGCGGGCTGGGT	0.622		NA											12	68					0	0	0	0
CHCHD6	84303	broad.mit.edu	37	3	126633572	126633572	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:126633572C>G	uc003ejf.1	+	6	583	c.545C>G	c.(544-546)TCA>TGA	p.S182*	CHCHD6_uc010hsj.1_Nonsense_Mutation_p.S183*	NM_032343	NP_115719	Q9BRQ6	CHCH6_HUMAN	coiled-coil-helix-coiled-coil-helix domain	182											0						GAGGCAGCCTCAAAGATGGAG	0.388		NA											33	12					0	0	0	0
MCM2	4171	broad.mit.edu	37	3	127338055	127338055	+	Silent	SNP	G	G	A	rs144817363		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:127338055G>A	uc003ejp.2	+	13	2256	c.2199G>A	c.(2197-2199)CCG>CCA	p.P733P	MCM2_uc011bkm.1_Silent_p.P603P|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Silent_p.P686P	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	733					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						GGGTCCACCCGAAGCTCAACC	0.597		NA											14	48					0	0	0	0
BFSP2	8419	broad.mit.edu	37	3	133191346	133191346	+	Missense_Mutation	SNP	G	G	T	rs141155612		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:133191346G>T	uc003epn.1	+	6	1319	c.1181G>T	c.(1180-1182)CGC>CTC	p.R394L		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	394	Rod.|Potential.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						CTGCTGGCCCGCAAGTGCCAG	0.662		NA											23	9					5.35e-11	8.2e-11	1	0
GPR171	29909	broad.mit.edu	37	3	150916254	150916254	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:150916254T>C	uc003eyq.3	-	3	1160	c.920A>G	c.(919-921)AAG>AGG	p.K307R	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	307	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTCTGAGCCTTGGTCTCTTT	0.398		NA											4	119					0	0	0	0
MME	4311	broad.mit.edu	37	3	154886357	154886357	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:154886357C>A	uc010hvr.1	+	19	2068	c.1857C>A	c.(1855-1857)TCC>TCA	p.S619S	MME_uc003fab.1_Silent_p.S619S|MME_uc003fac.1_Silent_p.S619S|MME_uc003fad.1_Silent_p.S619S|MME_uc003fae.1_Silent_p.S619S	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	619	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	AGGAGCAATCCCAGTGCATGG	0.393		NA											36	74					2.86e-05	3.96e-05	1	0
KPNA4	3840	broad.mit.edu	37	3	160219947	160219947	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:160219947C>G	uc003fdn.2	-	17	1817	c.1511G>C	c.(1510-1512)GGA>GCA	p.G504A		NM_002268	NP_002259	O00629	IMA4_HUMAN	karyopherin alpha 4	504					NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			ACCAAATGTTCCGCCTTGAAT	0.348		NA											15	205					0	0	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906545	164906545	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:164906545G>T	uc003fej.3	-	2	2518	c.2074C>A	c.(2074-2076)CGG>AGG	p.R692R	SLITRK3_uc003fek.2_Silent_p.R692R	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	692	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CCTTCCTGCCGCTTGCTTCTG	0.448		NA								HNSCC(40;0.11)			27	47					6.13e-19	1.02e-18	1	0
TNIK	23043	broad.mit.edu	37	3	170819397	170819397	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:170819397A>G	uc003fhh.2	-	22	2777	c.2432T>C	c.(2431-2433)CTA>CCA	p.L811P	TNIK_uc003fhi.2_Missense_Mutation_p.L756P|TNIK_uc003fhj.2_Missense_Mutation_p.L782P|TNIK_uc003fhk.2_Missense_Mutation_p.L803P|TNIK_uc003fhl.2_Missense_Mutation_p.L727P|TNIK_uc003fhm.2_Missense_Mutation_p.L748P|TNIK_uc003fhn.2_Missense_Mutation_p.L774P|TNIK_uc003fho.2_Missense_Mutation_p.L719P|TNIK_uc003fhg.2_5'UTR	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	811	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GAGTTCTCTTAGTTCTTTGGC	0.448		NA											51	181					0	0	0	0
ATP13A5	344905	broad.mit.edu	37	3	192994612	192994612	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:192994612G>T	uc011bsq.1	-	29	3323	c.3323C>A	c.(3322-3324)CCA>CAA	p.P1108Q		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	1108					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TGTTATGGTTGGGATCAACTG	0.239		NA											16	44					7.08e-05	9.67e-05	1	0
MUC4	4585	broad.mit.edu	37	3	195489041	195489041	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr3:195489041A>T	uc011bto.1	-	15	14505	c.14045T>A	c.(14044-14046)GTC>GAC	p.V4682D	MUC4_uc003fuz.2_Missense_Mutation_p.V408D|MUC4_uc003fva.2_Missense_Mutation_p.V290D|MUC4_uc003fvb.2_Missense_Mutation_p.V326D|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.V326D|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.V290D|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.V374D|MUC4_uc011bti.1_Missense_Mutation_p.V374D|MUC4_uc011btj.1_Missense_Mutation_p.V551D|MUC4_uc011btk.1_Missense_Mutation_p.V290D|MUC4_uc011btl.1_Missense_Mutation_p.V319D|MUC4_uc011btm.1_Missense_Mutation_p.V499D|MUC4_uc011btn.1_Missense_Mutation_p.V290D|MUC4_uc003fvo.2_Missense_Mutation_p.V574D|MUC4_uc003fvp.2_Missense_Mutation_p.V523D	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1567	VWFD.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GATCACCGAGACGGTGGCCCA	0.697		NA											9	16					0	0	0	0
FAM193A	8603	broad.mit.edu	37	4	2661595	2661595	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:2661595C>T	uc010icl.2	+	8	1037	c.686C>T	c.(685-687)CCC>CTC	p.P229L	FAM193A_uc010ick.2_Missense_Mutation_p.P429L|FAM193A_uc003gfd.2_Missense_Mutation_p.P229L|FAM193A_uc011bvm.1_Missense_Mutation_p.P253L|FAM193A_uc011bvn.1_Missense_Mutation_p.P229L|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.P83L	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	229										ovary(3)	3						ATCATGGACCCCCCCGTCACT	0.522		NA											31	35					0	0	0	0
KLHL5	51088	broad.mit.edu	37	4	39122661	39122661	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:39122661C>G	uc003gts.2	+	11	2318	c.2243C>G	c.(2242-2244)GCT>GGT	p.A748G	KLHL5_uc003gtp.2_Missense_Mutation_p.A702G|KLHL5_uc003gtq.2_Missense_Mutation_p.A561G|KLHL5_uc003gtt.2_Missense_Mutation_p.A687G	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	748	Kelch 6.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1						AGAGCTGGAGCTTGTGTTGTG	0.363		NA											8	33					0	0	0	0
DCAF4L1	285429	broad.mit.edu	37	4	41984019	41984019	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:41984019G>T	uc003gwk.2	+	1	307	c.210G>T	c.(208-210)GCG>GCT	p.A70A		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	70										skin(1)	1						CCTCTTTGGCGAGCGACCGAT	0.537		NA											21	12					4.35e-09	6.43e-09	1	0
NPFFR2	10886	broad.mit.edu	37	4	73012771	73012771	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:73012771G>C	uc003hgg.2	+	4	909	c.811G>C	c.(811-813)GTC>CTC	p.V271L	NPFFR2_uc010iig.1_Missense_Mutation_p.V53L|NPFFR2_uc003hgi.2_Missense_Mutation_p.V172L|NPFFR2_uc003hgh.2_Missense_Mutation_p.V169L|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	271	Helical; Name=4; (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GATCATCTGGGTCCTAGCCAT	0.388		NA											58	160					0	0	0	0
WDFY3	23001	broad.mit.edu	37	4	85661382	85661382	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:85661382A>T	uc003hpd.2	-	39	6830	c.6422T>A	c.(6421-6423)ATT>AAT	p.I2141N		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2141						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CAGACAGCTAATGAATTCTTG	0.423		NA											31	67					0	0	0	0
PTPN13	5783	broad.mit.edu	37	4	87610317	87610317	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:87610317A>G	uc003hpz.2	+	5	1000	c.520A>G	c.(520-522)AAA>GAA	p.K174E	PTPN13_uc003hpy.2_Missense_Mutation_p.K174E|PTPN13_uc003hqa.2_Missense_Mutation_p.K174E|PTPN13_uc003hqb.2_Missense_Mutation_p.K174E	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	174	KIND.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		ACACTTGGTAAAACTGGTTCT	0.373		NA											52	117					0	0	0	0
ADH6	130	broad.mit.edu	37	4	100131356	100131356	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:100131356G>T	uc003hup.3	-	5	544	c.450C>A	c.(448-450)TAC>TAA	p.Y150*	uc003hum.1_Intron|ADH6_uc003huo.2_Nonsense_Mutation_p.Y150*|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Nonsense_Mutation_p.Y150*	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	150					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	TTATCACTGTGTATTCACAGA	0.433		NA											37	61					8.74e-17	1.42e-16	1	0
NDST4	64579	broad.mit.edu	37	4	115767118	115767118	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:115767118G>T	uc003ibu.2	-	10	2655	c.1976C>A	c.(1975-1977)ACA>AAA	p.T659K	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	659	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		AAAGTCACTTGTAGTATTGGA	0.388		NA											24	42					1.18e-14	1.88e-14	1	0
PCDH10	57575	broad.mit.edu	37	4	134072572	134072572	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:134072572G>A	uc003iha.2	+	1	2103	c.1277G>A	c.(1276-1278)GGG>GAG	p.G426E	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.G426E	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	426	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		CGAGAGGCGGGGGACTCCTAC	0.587		NA											95	47					0	0	0	0
POU4F2	5458	broad.mit.edu	37	4	147561489	147561489	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:147561489C>A	uc003ikv.2	+	2	1007	c.759C>A	c.(757-759)GCC>GCA	p.A253A		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	253	POU-specific.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					ACGTGGACGCCGACCCGCGGG	0.682		NA											13	3					4.37e-10	6.59e-10	1	0
FBXW7	55294	broad.mit.edu	37	4	153247228	153247228	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:153247228A>T	uc003ims.2	-	10	1723	c.1574T>A	c.(1573-1575)GTG>GAG	p.V525E	FBXW7_uc011cii.1_Missense_Mutation_p.V525E|FBXW7_uc003imt.2_Missense_Mutation_p.V525E|FBXW7_uc011cih.1_Missense_Mutation_p.V349E|FBXW7_uc003imq.2_Missense_Mutation_p.V445E|FBXW7_uc003imr.2_Missense_Mutation_p.V407E	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	525	WD 4.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TGGATCCCACACCTTTACCAT	0.428		NA	Mis|N|D|F		colorectal|endometrial|T-ALL								39	30					0	0	0	0
RXFP1	59350	broad.mit.edu	37	4	159568073	159568073	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:159568073C>A	uc003ipz.2	+	16	1558	c.1476C>A	c.(1474-1476)GCC>GCA	p.A492A	RXFP1_uc011cja.1_Silent_p.A387A|RXFP1_uc010iqo.2_Silent_p.A444A|RXFP1_uc011cjb.1_Silent_p.A390A|RXFP1_uc010iqk.2_Silent_p.A360A|RXFP1_uc011cjc.1_Silent_p.A411A|RXFP1_uc011cjd.1_Silent_p.A411A|RXFP1_uc010iql.2_Silent_p.A336A|RXFP1_uc011cje.1_Silent_p.A519A|RXFP1_uc010iqm.2_Silent_p.A459A|RXFP1_uc011cjf.1_Silent_p.A361A|RXFP1_uc010iqn.2_Silent_p.A437A	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	492	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		GATCTTTGGCCATTCTGTCCA	0.408		NA											29	21					1.08e-15	1.74e-15	1	0
MARCH1	55016	broad.mit.edu	37	4	164534544	164534544	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:164534544G>T	uc003iqs.1	-	5	1141	c.164C>A	c.(163-165)GCA>GAA	p.A55E	MARCH1_uc003iqr.1_Missense_Mutation_p.A38E	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	55	Responsible for low stability (By similarity).				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGGGCTGCTTGCCTGGAGAAA	0.413		NA											18	19					3.52e-12	5.47e-12	1	0
TRIML2	205860	broad.mit.edu	37	4	189012609	189012609	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:189012609C>A	uc003izl.2	-	7	1118	c.1082G>T	c.(1081-1083)TGT>TTT	p.C361F	TRIML2_uc003izj.1_Missense_Mutation_p.C189F|TRIML2_uc003izk.1_Missense_Mutation_p.C169F|TRIML2_uc011cle.1_Missense_Mutation_p.C436F	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	361	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		ATTTGGGATACAGAGGGAAAA	0.463		NA											45	71					1.89e-27	3.25e-27	1	0
SLC12A7	10723	broad.mit.edu	37	5	1094289	1094289	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:1094289T>C	uc003jbu.2	-	2	265	c.199A>G	c.(199-201)AAG>GAG	p.K67E		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	67	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GCCATGTTCTTCCCTTCAAAG	0.468		NA											6	98					0	0	0	0
IRX2	153572	broad.mit.edu	37	5	2749623	2749623	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:2749623G>C	uc003jda.2	-	2	770	c.528C>G	c.(526-528)AAC>AAG	p.N176K	C5orf38_uc003jdc.2_5'Flank|C5orf38_uc011cmg.1_5'Flank|C5orf38_uc011cmh.1_5'Flank|C5orf38_uc011cmi.1_5'Flank|C5orf38_uc011cmj.1_5'Flank|IRX2_uc003jdb.2_Missense_Mutation_p.N176K	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	176						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		AGGTCATCTTGTTCTCCTTCT	0.602		NA											45	78					0	0	0	0
KIAA0947	23379	broad.mit.edu	37	5	5457653	5457653	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:5457653G>T	uc003jdm.3	+	12	1122	c.900G>T	c.(898-900)GAG>GAT	p.E300D		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	300										ovary(1)|central_nervous_system(1)	2						TTTTTAATGAGAATGGAAATC	0.358		NA											31	52					1.31e-18	2.17e-18	1	0
ADCY2	108	broad.mit.edu	37	5	7826964	7826964	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:7826964C>A	uc003jdz.1	+	25	3323	c.3256C>A	c.(3256-3258)CAG>AAG	p.Q1086K	ADCY2_uc011cmo.1_Missense_Mutation_p.Q906K|ADCY2_uc010itm.1_Missense_Mutation_p.Q282K	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	1086	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GTCCCTTTCCCAGAGCAACGT	0.468		NA											44	72					4.01e-20	6.75e-20	1	0
MARCH6	10299	broad.mit.edu	37	5	10405687	10405687	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:10405687C>T	uc003jet.1	+	16	1533	c.1350C>T	c.(1348-1350)GTC>GTT	p.V450V	MARCH6_uc011cmu.1_Silent_p.V402V|MARCH6_uc003jeu.1_Silent_p.V148V|MARCH6_uc011cmv.1_Silent_p.V345V	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	450	Cytoplasmic (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						GACCTGGTGTCCTGTGGTTTC	0.323		NA											38	43					0	0	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41048473	41048473	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:41048473A>G	uc003jmj.3	-	16	2127	c.1637T>C	c.(1636-1638)GTA>GCA	p.V546A	HEATR7B2_uc003jmi.3_Missense_Mutation_p.V101A	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	546	HEAT 6.						binding			ovary(6)|central_nervous_system(2)	8						CCATAGGTCTACCAATTTTGG	0.473		NA											34	72					0	0	0	0
ZNF131	7690	broad.mit.edu	37	5	43161390	43161390	+	Silent	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:43161390A>T	uc011cpw.1	+	5	447	c.411A>T	c.(409-411)ACA>ACT	p.T137T	ZNF131_uc010ivl.1_Silent_p.T137T|ZNF131_uc003jnj.3_5'UTR|ZNF131_uc003jnk.2_Silent_p.T137T|ZNF131_uc003jnn.3_5'UTR|ZNF131_uc003jnl.1_Intron|ZNF131_uc010ivm.1_Intron	NM_003432	NP_003423	P52739	ZN131_HUMAN	zinc finger protein 131	137						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AAAATACCACAGGAAAAAATG	0.318		NA											18	46					0	0	0	0
HCN1	348980	broad.mit.edu	37	5	45262557	45262557	+	Silent	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:45262557G>C	uc003jok.2	-	8	2164	c.2139C>G	c.(2137-2139)GCC>GCG	p.A713A		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	713	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						AAGTTCGAGCGGCCAGAGGGC	0.488		NA											7	17					0	0	0	0
HCN1	348980	broad.mit.edu	37	5	45396705	45396705	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:45396705C>A	uc003jok.2	-	4	1144	c.1119G>T	c.(1117-1119)TGG>TGT	p.W373C		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	373	Helical; Name=Segment S6; (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GCATGGTAATCCAGAGGTCAG	0.532		NA											21	64					2.46e-09	3.65e-09	1	0
HCN1	348980	broad.mit.edu	37	5	45695881	45695881	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:45695881C>A	uc003jok.2	-	1	340	c.315G>T	c.(313-315)GGG>GGT	p.G105G		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	105	Involved in subunit assembly (By similarity).|Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						ATTTGTTGACCCCGGGCTGCA	0.577		NA											15	36					0.000422831	0.000568567	1	0
ZNF366	167465	broad.mit.edu	37	5	71756259	71756259	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:71756259G>A	uc003kce.1	-	2	1251	c.1065C>T	c.(1063-1065)CAC>CAT	p.H355H		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	355	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GCTTGGCTTCGTGGGCCTTGA	0.662		NA											5	8					0	0	0	0
LIX1	167410	broad.mit.edu	37	5	96443064	96443064	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:96443064G>T	uc003kmy.3	-	3	627	c.387C>A	c.(385-387)AGC>AGA	p.S129R		NM_153234	NP_694966	Q8N485	LIX1_HUMAN	limb expression 1	129										ovary(1)	1		all_cancers(142;4.28e-07)|all_epithelial(76;1.06e-09)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0318)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.0733)		GGGTACTCACGCTGGTGGAGG	0.463		NA											24	25					5.45e-15	8.73e-15	1	0
PCDHB7	56129	broad.mit.edu	37	5	140553886	140553886	+	Silent	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:140553886G>C	uc003lit.2	+	1	1644	c.1470G>C	c.(1468-1470)CTG>CTC	p.L490L		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	490	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCTACTCCCTGCTGCCGTCCC	0.662		NA											41	37					0	0	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568207	140568207	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:140568207T>A	uc003liw.1	+	3	1316	c.1316T>A	c.(1315-1317)CTG>CAG	p.L439Q		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	439	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCATAACCCTGCAGGTCTCC	0.582		NA											64	33					0	0	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751528	140751528	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:140751528G>T	uc003ljw.1	+	1	1567	c.1567G>T	c.(1567-1569)GAG>TAG	p.E523*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Nonsense_Mutation_p.E523*|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	523	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTCGACCACGAGCAGCTGCG	0.687		NA											13	19					1.58e-08	2.32e-08	1	0
DOCK2	1794	broad.mit.edu	37	5	169509800	169509800	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:169509800C>T	uc003maf.2	+	52	5511	c.5431C>T	c.(5431-5433)CTG>TTG	p.L1811L	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Silent_p.L1303L|DOCK2_uc003mah.2_Silent_p.L367L	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1811					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTCTCAAAAGCTGGCCAGCAA	0.512		NA											19	16					0	0	0	0
GABRP	2568	broad.mit.edu	37	5	170238960	170238960	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:170238960G>A	uc003mau.2	+	10	1219	c.1021G>A	c.(1021-1023)GGG>AGG	p.G341R	GABRP_uc011dev.1_Missense_Mutation_p.G278E	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	341	Cytoplasmic (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TATGAACTAGGGGACAACAAA	0.358		NA											27	19					0	0	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179296770	179296770	+	Silent	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:179296770T>A	uc003mlh.2	-	17	2827	c.2790A>T	c.(2788-2790)CCA>CCT	p.P930P	TBC1D9B_uc003mli.2_Silent_p.P930P|TBC1D9B_uc003mlj.2_Silent_p.P930P|TBC1D9B_uc003mlf.2_5'Flank|TBC1D9B_uc003mlg.2_Silent_p.P106P|TBC1D9B_uc011dgv.1_Silent_p.P106P|TBC1D9B_uc011dgw.1_Silent_p.P106P|TBC1D9B_uc003mlk.1_Silent_p.P88P	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	930						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCTCTCACCTGGGGGAAGGT	0.632		NA											6	7					0	0	0	0
MGAT1	4245	broad.mit.edu	37	5	180218667	180218667	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:180218667C>A	uc003mmg.3	-	2	1800	c.1305G>T	c.(1303-1305)CTG>CTT	p.L435L	MGAT1_uc010jlf.2_Silent_p.L435L|MGAT1_uc010jlg.2_Silent_p.L435L|MGAT1_uc003mmh.3_Silent_p.L435L|MGAT1_uc010jlh.2_Silent_p.L435L|MGAT1_uc003mmi.3_Silent_p.L435L	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	435	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCTCCCACGTCAGTGGGGGCG	0.622		NA											19	20					5.35e-11	8.2e-11	1	0
BTNL3	10917	broad.mit.edu	37	5	180429673	180429673	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr5:180429673G>A	uc003mmr.2	+	4	803	c.675G>A	c.(673-675)GAG>GAA	p.E225E	BTNL3_uc010jlp.2_5'UTR	NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	225	Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			GTTTTTCAGAGACGTTTTTCC	0.458		NA											28	17					0	0	0	0
GCNT2	2651	broad.mit.edu	37	6	10529180	10529180	+	Silent	SNP	G	G	A	rs142352495	by1000genomes	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:10529180G>A	uc010joo.2	+	3	587	c.36G>A	c.(34-36)GCG>GCA	p.A12A	GCNT2_uc010jol.2_Intron|GCNT2_uc010jom.2_Intron|GCNT2_uc010jop.2_Intron|GCNT2_uc003mza.2_Intron|GCNT2_uc003mzc.3_Silent_p.A11A|GCNT2_uc010jon.2_Silent_p.A11A	NM_145649	NP_663624	Q8N0V5	GNT2A_HUMAN	glucosaminyl (N-acetyl) transferase 2,	12	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)	2	Ovarian(93;0.107)|Breast(50;0.148)	all_hematologic(90;0.107)		KIRC - Kidney renal clear cell carcinoma(1;0.099)|Kidney(1;0.119)		TTTTTAGCGCGTCTCTTATCT	0.388		NA											19	81					0	0	0	0
KIAA0319	9856	broad.mit.edu	37	6	24581232	24581232	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:24581232C>T	uc011djo.1	-	7	1438	c.1201G>A	c.(1201-1203)GGA>AGA	p.G401R	KIAA0319_uc011djp.1_Missense_Mutation_p.G356R|KIAA0319_uc003neh.1_Missense_Mutation_p.G401R|KIAA0319_uc011djq.1_Missense_Mutation_p.G392R|KIAA0319_uc011djr.1_Missense_Mutation_p.G401R|KIAA0319_uc010jpt.1_5'UTR	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	401	PKD 1.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						ACATAAAGTCCGACGGACAAC	0.423		NA									OREG0017229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	105					0	0	0	0
ABCF1	23	broad.mit.edu	37	6	30557701	30557701	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:30557701G>T	uc003nql.2	+	22	2278	c.2183G>T	c.(2182-2184)CGC>CTC	p.R728L	ABCF1_uc003nqm.2_Missense_Mutation_p.R690L|ABCF1_uc010jsb.2_Missense_Mutation_p.R121L	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	728	ABC transporter 2.				inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						TGCCTGGGCCGCTTCGGCCTG	0.612		NA											54	124					3.3e-22	5.61e-22	1	0
MDC1	9656	broad.mit.edu	37	6	30672319	30672319	+	Silent	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:30672319G>C	uc003nrg.3	-	10	5081	c.4641C>G	c.(4639-4641)GTC>GTG	p.V1547V	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Silent_p.V1154V	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1547	Interaction with the PRKDC complex.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GCTCAGGGGTGACAGGTTGGT	0.567		NA						Other_conserved_DNA_damage_response_genes					48	209					0	0	0	0
MDC1	9656	broad.mit.edu	37	6	30673202	30673202	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:30673202G>T	uc003nrg.3	-	10	4198	c.3758C>A	c.(3757-3759)TCC>TAC	p.S1253Y	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.S860Y	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1253	Pro-rich.|Interaction with the PRKDC complex.			Missing (in Ref. 2; CAH18685).	cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TGTGGAGGTGGAAGGCTGGAG	0.532		NA						Other_conserved_DNA_damage_response_genes					64	262					7.65e-43	1.35e-42	1	0
BAT2	7916	broad.mit.edu	37	6	31597550	31597550	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:31597550C>T	uc003nvb.3	+	14	2431	c.2182C>T	c.(2182-2184)CCT>TCT	p.P728S	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P728S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	728	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GATGATTCCTCCTTATGTGGA	0.637		NA											12	50					0	0	0	0
DAAM2	23500	broad.mit.edu	37	6	39869182	39869182	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:39869182G>T	uc003oow.2	+	24	3072	c.2916G>T	c.(2914-2916)CGG>CGT	p.R972R	DAAM2_uc003oox.2_Silent_p.R971R	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	972	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					CAGAGGCCCGGCAGGATCTAG	0.607		NA											36	58					1.27e-14	2.02e-14	1	0
SLC29A1	2030	broad.mit.edu	37	6	44197181	44197181	+	Silent	SNP	G	G	A	rs8187630	byFrequency	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:44197181G>A	uc003owu.1	+	3	413	c.84G>A	c.(82-84)CCG>CCA	p.P28P	SLC29A1_uc011dvp.1_Silent_p.P47P|SLC29A1_uc003owv.1_Silent_p.P28P|SLC29A1_uc003oww.1_Silent_p.P107P|SLC29A1_uc011dvq.1_Silent_p.P70P|SLC29A1_uc003owx.1_Silent_p.P28P|SLC29A1_uc003owy.1_Silent_p.P28P|SLC29A1_uc003owz.1_Silent_p.P28P	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	28	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	CGCTGCTCCCGTGGAATTTTT	0.562		NA											25	100					0	0	0	0
OPN5	221391	broad.mit.edu	37	6	47775957	47775957	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:47775957C>A	uc003ozc.2	+	5	829	c.824C>A	c.(823-825)TCA>TAA	p.S275*	OPN5_uc003ozd.2_Nonsense_Mutation_p.S110*	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	275	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						TCTGTGTGGTCAGCTTTTGGA	0.463		NA											71	131					5.99e-33	1.04e-32	1	0
C6orf138	442213	broad.mit.edu	37	6	48036041	48036041	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:48036041G>A	uc011dwm.1	-	1	385	c.300C>T	c.(298-300)CTC>CTT	p.L100L	C6orf138_uc011dwn.1_Intron|C6orf138_uc003ozf.2_Silent_p.L117L	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	117						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						CGGTTGGGGAGAGGAGGATCA	0.567		NA											35	95					0	0	0	0
PKHD1	5314	broad.mit.edu	37	6	51695776	51695776	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:51695776C>T	uc003pah.1	-	52	8461	c.8185G>A	c.(8185-8187)GCC>ACC	p.A2729T	PKHD1_uc010jzn.1_Missense_Mutation_p.A712T|PKHD1_uc003pai.2_Missense_Mutation_p.A2729T	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2729	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GATTCAGGGGCAGAGGTAGAA	0.393		NA											15	32					0	0	0	0
GSTA5	221357	broad.mit.edu	37	6	52697722	52697722	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:52697722C>A	uc003pba.1	-	6	551	c.481G>T	c.(481-483)GTG>TTG	p.V161L		NM_153699	NP_714543	Q7RTV2	GSTA5_HUMAN	glutathione S-transferase alpha 5	161	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.0912)				Glutathione(DB00143)	AAAAGTTCCACCAGGTGAATG	0.502		NA											41	90					9.63e-15	1.54e-14	1	0
LGSN	51557	broad.mit.edu	37	6	63990707	63990707	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:63990707G>T	uc003peh.2	-	4	783	c.749C>A	c.(748-750)ACT>AAT	p.T250N	LGSN_uc003pei.2_Intron	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	250					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	ATTGGCTCCAGTGTGATACAA	0.388		NA											19	28					2.39e-15	3.84e-15	1	0
PHF3	23469	broad.mit.edu	37	6	64401851	64401851	+	Missense_Mutation	SNP	T	T	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:64401851T>G	uc003pep.1	+	4	2440	c.2414T>G	c.(2413-2415)CTT>CGT	p.L805R	PHF3_uc010kaf.1_Missense_Mutation_p.L805R|PHF3_uc003pem.2_Missense_Mutation_p.L758R|PHF3_uc010kag.1_Missense_Mutation_p.L717R|PHF3_uc010kah.1_Missense_Mutation_p.L619R|PHF3_uc003pen.2_Missense_Mutation_p.L717R|PHF3_uc011dxs.1_Missense_Mutation_p.L74R	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	805					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TGTGAAAAGCTTGGATTATCA	0.338		NA											12	20					0	0	0	0
DPPA5	340168	broad.mit.edu	37	6	74063748	74063748	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:74063748G>A	uc003pgs.1	-	2	125	c.120C>T	c.(118-120)GAC>GAT	p.D40D		NM_001025290	NP_001020461	A6NC42	DPPA5_HUMAN	developmental pluripotency associated 5	40	KH; atypical.				multicellular organismal development	cytoplasm	RNA binding				0						TTCGAGATCCGTCCGGGCCTG	0.612		NA											11	40					0	0	0	0
SNAP91	9892	broad.mit.edu	37	6	84302213	84302213	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:84302213C>G	uc011dze.1	-	20	2208	c.1891G>C	c.(1891-1893)GCA>CCA	p.A631P	SNAP91_uc011dzd.1_Missense_Mutation_p.A134P|SNAP91_uc003pkb.2_Intron|SNAP91_uc003pkc.2_Intron|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.A629P	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	631					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		TCCACCTTTGCTGGCGAGGCA	0.438		NA											6	14					0	0	0	0
CGA	1081	broad.mit.edu	37	6	87796070	87796070	+	Missense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:87796070G>C	uc003plj.1	-	3	272	c.171C>G	c.(169-171)TTC>TTG	p.F57L		NM_000735	NP_000726	P01215	GLHA_HUMAN	glycoprotein hormones, alpha polypeptide	57					hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity			ovary(1)	1		all_cancers(76;5.98e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;5.29e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.000102)		BRCA - Breast invasive adenocarcinoma(108;0.0484)		ATGCTCTAGAGAAGCAGCAGC	0.473		NA											50	113					0	0	0	0
GPRC6A	222545	broad.mit.edu	37	6	117150007	117150007	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:117150007C>A	uc003pxj.1	-	1	192	c.170G>T	c.(169-171)CGA>CTA	p.R57L	GPRC6A_uc003pxk.1_Missense_Mutation_p.R57L|GPRC6A_uc003pxl.1_Missense_Mutation_p.R57L	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	57	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		GATTTGTGGTCGTCTGGGAGA	0.403		NA											11	55					1.62e-10	2.46e-10	1	0
ROS1	6098	broad.mit.edu	37	6	117678071	117678071	+	Missense_Mutation	SNP	A	A	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:117678071A>C	uc003pxp.1	-	25	4061	c.3862T>G	c.(3862-3864)TAT>GAT	p.Y1288D	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1288	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TCTGTCCAATACAAGCGACTA	0.378		NA	T	GOPC|ROS1	glioblastoma|NSCLC								3	45					0	0	0	0
CLVS2	134829	broad.mit.edu	37	6	123369837	123369837	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:123369837C>T	uc003pzi.1	+	4	1504	c.635C>T	c.(634-636)ACC>ATC	p.T212I		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	212	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GCCCTGTACACCGTGATCCGG	0.393		NA											61	127					0	0	0	0
OLIG3	167826	broad.mit.edu	37	6	137814987	137814987	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:137814987G>A	uc003qhp.1	-	1	545	c.321C>T	c.(319-321)CGC>CGT	p.R107R		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	107	Helix-loop-helix motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		GCATGACTTCGCGCAGCCCGT	0.612		NA											17	73					0	0	0	0
SHPRH	257218	broad.mit.edu	37	6	146271502	146271503	+	Missense_Mutation	DNP	CC	CC	AT			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:146271502_146271503CC>AT	uc003qlf.2	-	4	1278_1279	c.879_880GG>AT	c.(877-882)GTGGAT>GTATAT	p.D294Y	SHPRH_uc003qld.2_Missense_Mutation_p.D294Y|SHPRH_uc003qle.2_Missense_Mutation_p.D294Y|SHPRH_uc003qlg.1_5'UTR|SHPRH_uc003qlj.1_Missense_Mutation_p.D183Y|SHPRH_uc003qlk.1_Missense_Mutation_p.D294Y	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	294					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		TGCTGGACATCCACTTGGATGG	0.475		NA											51	96					0	0	0	0
PLEKHG1	57480	broad.mit.edu	37	6	151055105	151055105	+	Silent	SNP	C	C	T	rs141401834		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:151055105C>T	uc003qny.1	+	3	600	c.288C>T	c.(286-288)AAC>AAT	p.N96N	PLEKHG1_uc011eel.1_Silent_p.N136N|PLEKHG1_uc011eem.1_Silent_p.N155N|PLEKHG1_uc003qnz.2_Silent_p.N96N	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	96					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		TGGACTCAAACGGGGCACCCA	0.592		NA											9	51					0	0	0	0
AKAP12	9590	broad.mit.edu	37	6	151671537	151671537	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:151671537C>T	uc011eep.1	+	4	2251	c.2011C>T	c.(2011-2013)CGC>TGC	p.R671C	AKAP12_uc003qoe.2_Missense_Mutation_p.R671C|AKAP12_uc003qof.2_Missense_Mutation_p.R573C|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.R566C	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	671					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		AGAACCAAAGCGCAAGGTGGA	0.507		NA											7	57					0	0	0	0
C6orf118	168090	broad.mit.edu	37	6	165715112	165715112	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:165715112C>A	uc003qum.3	-	2	735	c.699G>T	c.(697-699)AAG>AAT	p.K233N	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	233											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TGAAGTCATTCTTCAGGAGAT	0.607		NA											21	41					1.02e-10	1.55e-10	1	0
FAM120B	84498	broad.mit.edu	37	6	170628053	170628053	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:170628053C>A	uc003qxp.2	+	2	1683	c.1575C>A	c.(1573-1575)CAC>CAA	p.H525Q	FAM120B_uc003qxo.1_Missense_Mutation_p.H525Q|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	525					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		TGTGTACACACGCTGAAATCA	0.378		NA											15	42					1.36e-06	1.94e-06	1	0
GNA12	2768	broad.mit.edu	37	7	2834632	2834632	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:2834632G>A	uc003smu.2	-	2	619	c.455C>T	c.(454-456)CCG>CTG	p.P152L	GNA12_uc011jwb.1_Missense_Mutation_p.P152L|GNA12_uc003smt.2_Missense_Mutation_p.P93L	NM_007353	NP_031379	Q03113	GNA12_HUMAN	guanine nucleotide binding protein (G protein)	152					G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.02e-13)		GCTCAGGGCCGGGACGTACAG	0.592		NA											5	107					0	0	0	0
HERPUD2	64224	broad.mit.edu	37	7	35674850	35674850	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:35674850C>T	uc003tet.2	-	6	1641	c.836G>A	c.(835-837)TGG>TAG	p.W279*	HERPUD2_uc003tes.3_Nonsense_Mutation_p.W279*	NM_022373	NP_071768	Q9BSE4	HERP2_HUMAN	HERPUD family member 2	279					response to unfolded protein	integral to membrane				ovary(3)	3						CGTGTACATCCAGTCTAGCCA	0.433		NA											65	39					0	0	0	0
IGFBP1	3484	broad.mit.edu	37	7	45928415	45928415	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:45928415C>A	uc003tnp.2	+	1	457	c.164C>A	c.(163-165)GCC>GAC	p.A55D	IGFBP1_uc003tno.3_Missense_Mutation_p.A55D|IGFBP1_uc010kyn.2_Missense_Mutation_p.A55D	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	55	IGFBP N-terminal.					extracellular space	insulin-like growth factor binding			lung(1)	1						ACCCGGTCCGCCGGCTGCGGC	0.771		NA											7	12					1.07e-07	1.55e-07	1	0
SEPT14	346288	broad.mit.edu	37	7	55914269	55914269	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:55914269G>T	uc003tqz.2	-	3	233	c.116C>A	c.(115-117)CCC>CAC	p.P39H		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	39					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CAACTGATTGGGCAAACATTC	0.303		NA											50	102					1.36e-18	2.25e-18	1	0
ZNF479	90827	broad.mit.edu	37	7	57188130	57188130	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:57188130C>T	uc010kzo.2	-	5	1263	c.992G>A	c.(991-993)GGC>GAC	p.G331D		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	331	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			AAAGGCTTTGCCACATTCCTC	0.443		NA											8	21					0	0	0	0
CLIP2	7461	broad.mit.edu	37	7	73753270	73753270	+	Missense_Mutation	SNP	A	A	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:73753270A>G	uc003uam.2	+	3	941	c.614A>G	c.(613-615)AAC>AGC	p.N205S	CLIP2_uc003uan.2_Missense_Mutation_p.N205S	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	205						microtubule associated complex				skin(3)	3						TCGGGATCCAACCTCTCAGAC	0.677		NA											16	33					0	0	0	0
ZP3	7784	broad.mit.edu	37	7	76058904	76058904	+	Missense_Mutation	SNP	G	G	A	rs144669807	by1000genomes	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:76058904G>A	uc003ufd.3	+	2	395	c.385G>A	c.(385-387)GTG>ATG	p.V129M	ZP3_uc003ufc.3_Missense_Mutation_p.V78M|ZP3_uc003ufe.2_Missense_Mutation_p.V37M	NM_001110354	NP_001103824	P21754	ZP3_HUMAN	zona pellucida glycoprotein 3 isoform 1	129	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|blastocyst formation|egg coat formation|humoral immune response mediated by circulating immunoglobulin|intracellular protein transport|negative regulation of binding of sperm to zona pellucida|negative regulation of transcription, DNA-dependent|oocyte development|phosphatidylinositol-mediated signaling|positive regulation of acrosomal vesicle exocytosis|positive regulation of acrosome reaction|positive regulation of antral ovarian follicle growth|positive regulation of calcium ion import|positive regulation of calcium ion transport via store-operated calcium channel activity|positive regulation of humoral immune response|positive regulation of interferon-gamma production|positive regulation of interleukin-4 production|positive regulation of leukocyte migration|positive regulation of ovarian follicle development|positive regulation of phosphatidylinositol biosynthetic process|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of T cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of type IV hypersensitivity|protein kinase C signaling cascade	endoplasmic reticulum|extracellular space|Golgi apparatus|integral to membrane|multivesicular body|outer acrosomal membrane|perinuclear region of cytoplasm|plasma membrane|proteinaceous extracellular matrix	acrosin binding|manganese ion transmembrane transporter activity|receptor activity|sugar binding				0						CCTGTCCATCGTGAGGACTAA	0.597		NA											14	58					0	0	0	0
CACNA2D1	781	broad.mit.edu	37	7	81591325	81591325	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:81591325C>T	uc003uhr.1	-	36	3107	c.2851G>A	c.(2851-2853)GAT>AAT	p.D951N	CACNA2D1_uc011kgy.1_Missense_Mutation_p.D163N	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	963	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	GTGAAGTCATCATCCTCCATC	0.483		NA											56	544					0	0	0	0
PCLO	27445	broad.mit.edu	37	7	82764156	82764156	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:82764156G>A	uc003uhx.2	-	3	2999	c.2710C>T	c.(2710-2712)CGT>TGT	p.R904C	PCLO_uc003uhv.2_Missense_Mutation_p.R904C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	850	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGACTGAAACGCCTTGACTGC	0.542		NA											26	241					0	0	0	0
MCM7	4176	broad.mit.edu	37	7	99691888	99691888	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:99691888C>T	uc003usw.1	-	13	2266	c.1756G>A	c.(1756-1758)GTG>ATG	p.V586M	MCM7_uc003usv.1_Missense_Mutation_p.V410M|MCM7_uc003usx.1_Missense_Mutation_p.V410M|uc003usy.1_5'Flank|MIR25_hsa-mir-25|MI0000082_5'Flank|uc003usz.1_5'Flank|MIR93_hsa-mir-93|MI0000095_5'Flank|uc003uta.1_5'Flank|MIR106B_hsa-mir-106b|MI0000734_5'Flank	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	586	Interaction with ATRIP.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	CTCATCTCCACGTATGCTGCT	0.577		NA											11	60					0	0	0	0
AP4M1	9179	broad.mit.edu	37	7	99702922	99702922	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:99702922G>A	uc003utb.3	+	10	995	c.787G>A	c.(787-789)GAA>AAA	p.E263K	AP4M1_uc011kjg.1_Missense_Mutation_p.E217K|AP4M1_uc010lgl.1_Missense_Mutation_p.E263K|AP4M1_uc003utc.3_Missense_Mutation_p.E270K|AP4M1_uc010lgm.2_Missense_Mutation_p.E135K|AP4M1_uc003utd.2_Missense_Mutation_p.E263K|AP4M1_uc011kjh.1_Missense_Mutation_p.E215K|AP4M1_uc003ute.3_Missense_Mutation_p.E38K|AP4M1_uc003utf.3_Missense_Mutation_p.E135K	NM_004722	NP_004713	O00189	AP4M1_HUMAN	adaptor-related protein complex 4, mu 1 subunit	263	MHD.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|coated pit|Golgi trans cisterna	transporter activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAATCTGGACGAATTTGAGTC	0.542		NA											22	113					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100682580	100682580	+	Missense_Mutation	SNP	C	C	T	rs146245479	by1000genomes	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:100682580C>T	uc003uxp.1	+	3	7936	c.7883C>T	c.(7882-7884)CCT>CTT	p.P2628L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2628	Extracellular (Potential).|59 X approximate tandem repeats.|42.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATCTCAACTCCTAGTGAAGTA	0.458		NA											255	106					0	0	0	0
ARMC10	83787	broad.mit.edu	37	7	102738868	102738868	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:102738868G>T	uc003vaw.1	+	7	1292	c.900G>T	c.(898-900)CAG>CAT	p.Q300H	ARMC10_uc003vay.1_Missense_Mutation_p.Q241H|ARMC10_uc003vax.1_Missense_Mutation_p.Q265H|ARMC10_uc003vbb.1_Missense_Mutation_p.Q206H|ARMC10_uc011kli.1_Missense_Mutation_p.Q241H|ARMC10_uc010lis.1_Missense_Mutation_p.Q182H|ARMC10_uc003vba.1_RNA|ARMC10_uc003vaz.1_Missense_Mutation_p.Q178H	NM_031905	NP_114111	Q8N2F6	ARM10_HUMAN	SVH protein isoform a	300					regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding			ovary(1)	1						TAGCTGTGCAGCCTACTTTCA	0.403		NA											16	63					1.75e-11	2.7e-11	1	0
FOXP2	93986	broad.mit.edu	37	7	114284743	114284743	+	Silent	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:114284743G>C	uc003vhb.2	+	8	1367	c.993G>C	c.(991-993)TCG>TCC	p.S331S	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Silent_p.S356S|FOXP2_uc003vha.2_Silent_p.S239S|FOXP2_uc011kmu.1_Silent_p.S348S|FOXP2_uc011kmv.1_Silent_p.S330S|FOXP2_uc010ljz.1_Silent_p.S239S|FOXP2_uc003vgx.2_Silent_p.S331S|FOXP2_uc003vhd.2_Silent_p.S331S|FOXP2_uc003vhc.2_Silent_p.S356S	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	331					camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GCTACAGCTCGTCACATGAGG	0.468		NA											5	37					0	0	0	0
POT1	25913	broad.mit.edu	37	7	124475372	124475372	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:124475372G>A	uc003vlm.2	-	15	2067	c.1466C>T	c.(1465-1467)TCA>TTA	p.S489L	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.S358L|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	489					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						AAATGGTGCTGAAAGGTCCAA	0.289		NA											13	71					0	0	0	0
OR2A2	442361	broad.mit.edu	37	7	143807030	143807030	+	Missense_Mutation	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:143807030T>A	uc011ktz.1	+	1	355	c.355T>A	c.(355-357)TAT>AAT	p.Y119N		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GGTGATGTCCTATGATAGGTA	0.463		NA											96	41					0	0	0	0
HTR5A	3361	broad.mit.edu	37	7	154862941	154862941	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr7:154862941G>T	uc003wlu.1	+	1	396	c.332G>T	c.(331-333)CGG>CTG	p.R111L	uc011kvt.1_Silent_p.R25R|uc003wlt.2_Silent_p.R25R	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	111	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CAGCTAGGTCGGAGGCTGTGC	0.667		NA											12	30					1.58e-08	2.32e-08	1	0
PIWIL2	55124	broad.mit.edu	37	8	22167481	22167481	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:22167481G>T	uc003xbn.2	+	15	1842	c.1694G>T	c.(1693-1695)GGA>GTA	p.G565V	PIWIL2_uc011kzf.1_Missense_Mutation_p.G565V|PIWIL2_uc010ltv.2_Missense_Mutation_p.G565V	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	565					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		TAGATTGAAGGACGTGTTCTG	0.388		NA											28	23					2.13e-12	3.32e-12	1	0
PURG	29942	broad.mit.edu	37	8	30889770	30889770	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:30889770C>G	uc003xin.2	-	1	548	c.529G>C	c.(529-531)GAG>CAG	p.E177Q	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.E177Q	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	177	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		TTGTCCCTCTCGATATAGTCT	0.532		NA											14	58					0	0	0	0
PURG	29942	broad.mit.edu	37	8	30889786	30889786	+	Silent	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:30889786C>G	uc003xin.2	-	1	532	c.513G>C	c.(511-513)CTG>CTC	p.L171L	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Silent_p.L171L	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	171	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		AGTCTGTTTTCAGGACACTGT	0.527		NA											15	74					0	0	0	0
PURG	29942	broad.mit.edu	37	8	30890041	30890041	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:30890041C>G	uc003xin.2	-	1	277	c.258G>C	c.(256-258)AAG>AAC	p.K86N	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.K86N	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	86	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		CTTCGGCTATCTTTAGGAAGC	0.552		NA											7	26					0	0	0	0
IKBKB	3551	broad.mit.edu	37	8	42171930	42171930	+	Silent	SNP	C	C	T	rs150493359		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:42171930C>T	uc003xow.1	+	9	960	c.783C>T	c.(781-783)TAC>TAT	p.Y261Y	IKBKB_uc003xov.2_Silent_p.Y261Y|IKBKB_uc010lxh.1_Silent_p.Y156Y|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Silent_p.Y38Y|IKBKB_uc003xox.1_5'UTR|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Silent_p.Y259Y|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Silent_p.Y202Y	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	261	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	CTTTACCCTACCCCAATAATC	0.358		NA											42	90					0	0	0	0
ST18	9705	broad.mit.edu	37	8	53084518	53084518	+	Silent	SNP	C	C	T	rs149814559		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:53084518C>T	uc003xqz.2	-	5	1059	c.903G>A	c.(901-903)GGG>GGA	p.G301G	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Silent_p.G266G|ST18_uc011lds.1_Silent_p.G206G|ST18_uc003xra.2_Silent_p.G301G|ST18_uc003xrb.2_Silent_p.G301G	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	301						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				AACTTAAATTCCCCTTGGCCT	0.527		NA											22	40					0	0	0	0
CHD7	55636	broad.mit.edu	37	8	61769309	61769309	+	Silent	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:61769309G>A	uc003xue.2	+	34	7947	c.7470G>A	c.(7468-7470)TCG>TCA	p.S2490S		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2490					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CAGGCCTTTCGCGCACACCCA	0.483		NA											31	165					0	0	0	0
NBN	4683	broad.mit.edu	37	8	90960066	90960066	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:90960066C>G	uc003yej.1	-	12	2010	c.1900G>C	c.(1900-1902)GCT>CCT	p.A634P	NBN_uc003yei.1_Missense_Mutation_p.A552P|NBN_uc011lgb.1_Missense_Mutation_p.A634P	NM_002485	NP_002476	O60934	NBN_HUMAN	nibrin	634					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator|DNA duplex unwinding|double-strand break repair via homologous recombination|meiosis|mitotic cell cycle G1/S transition checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|positive regulation of kinase activity|positive regulation of protein autophosphorylation|regulation of DNA-dependent DNA replication initiation|telomere maintenance	Mre11 complex|nuclear chromosome, telomeric region|nuclear inclusion body|nucleolus|nucleoplasm	protein N-terminus binding|transcription factor binding			central_nervous_system(3)|kidney(3)|lung(1)	7			BRCA - Breast invasive adenocarcinoma(11;0.0344)			ATTTCTTTAGCTGACCATAGT	0.303		NA						Direct_reversal_of_damage|Homologous_recombination	Nijmegen_Breakage_syndrome				2	6					0	0	0	0
KCNS2	3788	broad.mit.edu	37	8	99440930	99440930	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:99440930G>T	uc003yin.2	+	2	1073	c.723G>T	c.(721-723)GAG>GAT	p.E241D		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	241	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			TCACATTTGAGCTGGTGGCCA	0.532		NA											49	66					2.65e-19	4.43e-19	1	0
CSMD3	114788	broad.mit.edu	37	8	114111143	114111144	+	Nonsense_Mutation	DNP	GG	GG	TT			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:114111143_114111144GG>TT	uc003ynu.2	-	5	917_918	c.758_759CC>AA	c.(757-759)TCC>TAA	p.S253*	CSMD3_uc003ynt.2_Nonsense_Mutation_p.S213*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.S253*|CSMD3_uc010mcx.1_Nonsense_Mutation_p.S253*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	253	Extracellular (Potential).|CUB 2.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AACTAGGGCTGGATATGATGCC	0.381		NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			7	34					0	0	0	0
SNTB1	6641	broad.mit.edu	37	8	121587411	121587411	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:121587411T>C	uc010mdg.2	-	4	1277	c.1051A>G	c.(1051-1053)AAA>GAA	p.K351E	SNTB1_uc003ype.2_Missense_Mutation_p.K351E	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	351	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			AAAAGGTCTTTCTCAGTCAGC	0.512		NA											55	99					0	0	0	0
WISP1	8840	broad.mit.edu	37	8	134225121	134225121	+	Silent	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:134225121C>A	uc003yub.2	+	2	160	c.84C>A	c.(82-84)GCC>GCA	p.A28A	WISP1_uc003yuc.2_Silent_p.A28A|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Silent_p.A28A|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_5'Flank	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	28					cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			TCTCTCCAGCCCCTACGACCA	0.647		NA											7	9					8.13e-05	0.000110462	1	0
FAM135B	51059	broad.mit.edu	37	8	139151264	139151264	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:139151264C>T	uc003yuy.2	-	18	4037	c.3866G>A	c.(3865-3867)CGC>CAC	p.R1289H	FAM135B_uc003yux.2_Missense_Mutation_p.R1190H|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1289										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GAAACATTTGCGCAAATCAGC	0.423		NA								HNSCC(54;0.14)			18	56					0	0	0	0
COL22A1	169044	broad.mit.edu	37	8	139691866	139691866	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:139691866A>T	uc003yvd.2	-	40	3513	c.3066T>A	c.(3064-3066)TGT>TGA	p.C1022*	COL22A1_uc011ljo.1_Intron	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1022	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TGACCTTAACACATTGCCCTC	0.348		NA								HNSCC(7;0.00092)			24	51					0	0	0	0
EIF2C2	27161	broad.mit.edu	37	8	141561467	141561467	+	Silent	SNP	G	G	A	rs142051728		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:141561467G>A	uc003yvn.2	-	11	1378	c.1338C>T	c.(1336-1338)ATC>ATT	p.I446I	EIF2C2_uc010men.2_Silent_p.I369I|EIF2C2_uc010meo.2_Silent_p.I446I	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	446					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CCTTGATCTCGATGCCCGTGT	0.592		NA											40	65					0	0	0	0
CYP11B1	1584	broad.mit.edu	37	8	143961004	143961004	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:143961004C>G	uc003yxi.2	-	1	233	c.226G>C	c.(226-228)GGG>CGG	p.G76R	CYP11B1_uc003yxj.2_Missense_Mutation_p.G76R|CYP11B1_uc010mey.2_Missense_Mutation_p.G76R	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	76					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	AAAATGGGCCCTAGTTCCTGG	0.632		NA							Familial_Hyperaldosteronism_type_I				31	69					0	0	0	0
TOP1MT	116447	broad.mit.edu	37	8	144403486	144403486	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:144403486C>A	uc003yxz.2	-	8	1050	c.1031G>T	c.(1030-1032)CGC>CTC	p.R344L	TOP1MT_uc011lkd.1_Missense_Mutation_p.R246L|TOP1MT_uc011lke.1_Missense_Mutation_p.R246L|TOP1MT_uc010mfb.2_Missense_Mutation_p.R246L|TOP1MT_uc011lkf.1_Missense_Mutation_p.R139L|TOP1MT_uc010mfd.1_Missense_Mutation_p.R139L	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	344					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	GTGCTCCACGCGGAGGGAACA	0.607		NA											29	33					3.99e-17	6.53e-17	1	0
PLEC	5339	broad.mit.edu	37	8	144992693	144992693	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:144992693G>A	uc003zaf.1	-	32	11877	c.11707C>T	c.(11707-11709)CGG>TGG	p.R3903W	PLEC_uc003zab.1_Missense_Mutation_p.R3766W|PLEC_uc003zac.1_Missense_Mutation_p.R3770W|PLEC_uc003zad.2_Missense_Mutation_p.R3766W|PLEC_uc003zae.1_Missense_Mutation_p.R3734W|PLEC_uc003zag.1_Missense_Mutation_p.R3744W|PLEC_uc003zah.2_Missense_Mutation_p.R3752W|PLEC_uc003zaj.2_Missense_Mutation_p.R3793W	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3903	Globular 2.|Plectin 19.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GTGACCGCCCGCTCAGCCGAG	0.677		NA											7	18					0	0	0	0
PLEC	5339	broad.mit.edu	37	8	144996154	144996154	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:144996154G>C	uc003zaf.1	-	32	8416	c.8246C>G	c.(8245-8247)TCA>TGA	p.S2749*	PLEC_uc003zab.1_Nonsense_Mutation_p.S2612*|PLEC_uc003zac.1_Nonsense_Mutation_p.S2616*|PLEC_uc003zad.2_Nonsense_Mutation_p.S2612*|PLEC_uc003zae.1_Nonsense_Mutation_p.S2580*|PLEC_uc003zag.1_Nonsense_Mutation_p.S2590*|PLEC_uc003zah.2_Nonsense_Mutation_p.S2598*|PLEC_uc003zaj.2_Nonsense_Mutation_p.S2639*	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2749	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GACCTCCTCTGAGTGCGCCAG	0.632		NA											3	34					0	0	0	0
GPR172A	79581	broad.mit.edu	37	8	145583729	145583729	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:145583729G>A	uc003zcc.1	+	3	734	c.577G>A	c.(577-579)GCC>ACC	p.A193T	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Missense_Mutation_p.A193T|GPR172A_uc003zce.1_Missense_Mutation_p.A193T|GPR172A_uc010mfy.1_Missense_Mutation_p.A193T|GPR172A_uc003zcf.1_Missense_Mutation_p.A193T|GPR172A_uc011llc.1_Missense_Mutation_p.A105T	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	193						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GCGTTTTCCCGCCAGCACCTT	0.662		NA											33	64					0	0	0	0
CPSF1	29894	broad.mit.edu	37	8	145626157	145626157	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr8:145626157C>T	uc003zcj.2	-	7	669	c.594G>A	c.(592-594)GAG>GAA	p.E198E	CPSF1_uc003zck.1_Silent_p.E120E|CPSF1_uc011lle.1_Silent_p.E198E|MIR1234_hsa-mir-1234|MI0006324_5'Flank|CPSF1_uc011llf.1_Silent_p.E198E	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	198					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			TGAGCAGCTTCTCGTCTAGGG	0.637		NA											9	44					0	0	0	0
SMARCA2	6595	broad.mit.edu	37	9	2123782	2123782	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:2123782G>A	uc003zhc.2	+	27	3925	c.3826G>A	c.(3826-3828)GAG>AAG	p.E1276K	SMARCA2_uc003zhd.2_Missense_Mutation_p.E1276K|SMARCA2_uc010mha.2_Missense_Mutation_p.E1209K	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1276					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		CCGTTTAATGGAGGAGGATGA	0.547		NA											7	36					0	0	0	0
TMEM215	401498	broad.mit.edu	37	9	32784253	32784253	+	Silent	SNP	T	T	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:32784253T>A	uc003zri.3	+	2	437	c.72T>A	c.(70-72)GGT>GGA	p.G24G		NM_212558	NP_997723	Q68D42	TM215_HUMAN	transmembrane protein 215	24	Helical; (Potential).					integral to membrane					0						TCGTCTTTGGTTTCATGTTCA	0.582		NA											25	16					0	0	0	0
ZBTB5	9925	broad.mit.edu	37	9	37441584	37441584	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:37441584T>C	uc003zzx.2	-	2	1165	c.965A>G	c.(964-966)AAG>AGG	p.K322R		NM_014872	NP_055687	O15062	ZBTB5_HUMAN	zinc finger and BTB domain containing 5	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(29;0.00733)|Lung(182;0.226)		CATGTGCTCCTTCTCACCAAG	0.512		NA											3	88					0	0	0	0
MCART1	92014	broad.mit.edu	37	9	37888027	37888027	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:37888027C>T	uc004aau.2	-	3	1265	c.521G>A	c.(520-522)CGA>CAA	p.R174Q	MCART1_uc004aar.1_Intron|MCART1_uc004aaq.1_Intron|uc004aat.1_5'Flank|MCART1_uc004aav.2_Missense_Mutation_p.R174Q	NM_033412	NP_219480	Q9H1U9	MCAR1_HUMAN	mitochondrial carrier triple repeat 1	174	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane				ovary(2)|breast(1)	3				GBM - Glioblastoma multiforme(29;0.00559)|Lung(182;0.0422)		CACCAAGCCTCGATAATACTC	0.463		NA											20	61					0	0	0	0
FAM189A2	9413	broad.mit.edu	37	9	72006633	72006633	+	Silent	SNP	G	G	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:72006633G>C	uc010mon.1	+	11	1370	c.1266G>C	c.(1264-1266)GGG>GGC	p.G422G	FAM189A2_uc004ahg.2_Silent_p.G422G|FAM189A2_uc010moo.1_Missense_Mutation_p.E160Q	NM_001127608	NP_001121080	Q15884	F1892_HUMAN	chromosome 9 open reading frame 61 precursor	422						integral to membrane					0						CACCAGCGGGGAGGCCCCGAG	0.672		NA											3	25					0	0	0	0
FLJ46321	389763	broad.mit.edu	37	9	84603737	84603737	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:84603737G>A	uc004amn.2	+	1	51	c.4G>A	c.(4-6)GAG>AAG	p.E2K		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	2						integral to membrane					0						TCAGACCATGGAGAATATCCT	0.502		NA											28	34					0	0	0	0
DAPK1	1612	broad.mit.edu	37	9	90264868	90264868	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:90264868G>A	uc004apc.2	+	16	1599	c.1461G>A	c.(1459-1461)TGG>TGA	p.W487*	DAPK1_uc004ape.2_Nonsense_Mutation_p.W487*|DAPK1_uc004apd.2_Nonsense_Mutation_p.W487*|DAPK1_uc011ltg.1_Nonsense_Mutation_p.W487*|DAPK1_uc011lth.1_Nonsense_Mutation_p.W224*|DAPK1_uc004apf.1_Nonsense_Mutation_p.W41*	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	487	ANK 4.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						GTGCTGCTTGGCACGGCTATT	0.522		NA							Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				18	42					0	0	0	0
PAPPA	5069	broad.mit.edu	37	9	118974201	118974201	+	Missense_Mutation	SNP	G	G	T	rs144109251		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:118974201G>T	uc004bjn.2	+	4	2289	c.1908G>T	c.(1906-1908)ATG>ATT	p.M636I	PAPPA_uc011lxp.1_Intron|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	636					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ACAACTTCATGAGCTATGCAG	0.512		NA											75	115					5.45e-36	9.54e-36	1	0
OR1L6	392390	broad.mit.edu	37	9	125512877	125512877	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:125512877C>G	uc011lzc.1	+	1	859	c.859C>G	c.(859-861)CTT>GTT	p.L287V		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	287	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCAGTAGCCCTTTTCTATGG	0.517		NA											20	57					0	0	0	0
LAMC3	10319	broad.mit.edu	37	9	133901891	133901891	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:133901891C>T	uc004caa.1	+	2	691	c.593C>T	c.(592-594)TCC>TTC	p.S198F		NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	198	Laminin N-terminal.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		AGCGACATCTCCCCGCTGAGT	0.701		NA											9	22					0	0	0	0
EHMT1	79813	broad.mit.edu	37	9	140728957	140728957	+	Missense_Mutation	SNP	G	G	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr9:140728957G>A	uc011mfc.1	+	26	3734	c.3697G>A	c.(3697-3699)GAG>AAG	p.E1233K	EHMT1_uc004coe.2_Missense_Mutation_p.E138K	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1233	SET.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		CCGCCTGATCGAGGCCGGCGA	0.697		NA											6	32					0	0	0	0
PPEF1	5475	broad.mit.edu	37	X	18836239	18836239	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:18836239C>A	uc004cyq.2	+	16	1958	c.1477C>A	c.(1477-1479)CAA>AAA	p.Q493K	PPEF1_uc004cyp.2_Missense_Mutation_p.Q465K|PPEF1_uc004cyr.2_Missense_Mutation_p.Q431K|PPEF1_uc004cys.2_Missense_Mutation_p.Q493K|PPEF1_uc011mja.1_Missense_Mutation_p.Q428K|PPEF1_uc011mjb.1_Missense_Mutation_p.Q437K	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	493	EF-hand 1.				detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					TCGTGCTTTCCAACTTCAAGA	0.353		NA											31	15					5.6e-13	8.8e-13	1	0
FTHL17	53940	broad.mit.edu	37	X	31089993	31089993	+	Silent	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:31089993C>G	uc004dcl.1	-	1	181	c.78G>C	c.(76-78)ACG>ACC	p.T26T		NM_031894	NP_114100	Q9BXU8	FHL17_HUMAN	ferritin, heavy polypeptide-like 17	26	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport		ferric iron binding|oxidoreductase activity				0						AGAGCTCCAGCGTGATGTGGC	0.627		NA											23	18					0	0	0	0
DMD	1756	broad.mit.edu	37	X	32536238	32536238	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:32536238C>G	uc004dda.1	-	18	2423	c.2179G>C	c.(2179-2181)GAT>CAT	p.D727H	DMD_uc004dcz.2_Missense_Mutation_p.D604H|DMD_uc004dcy.1_Missense_Mutation_p.D723H|DMD_uc004ddb.1_Missense_Mutation_p.D719H|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.D719H	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	727	Spectrin 4.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TCAGTTATATCAACATCCAAC	0.333		NA											11	5					0	0	0	0
KCND1	3750	broad.mit.edu	37	X	48822582	48822582	+	Missense_Mutation	SNP	C	C	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:48822582C>A	uc004dlx.1	-	5	3171	c.1598G>T	c.(1597-1599)TGC>TTC	p.C533F	KCND1_uc004dlw.1_Missense_Mutation_p.C156F	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	533	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						CCTGCGAGGGCAGCAAGAAGA	0.682		NA											24	9					4.72e-08	6.85e-08	1	0
CCNB3	85417	broad.mit.edu	37	X	50052941	50052941	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:50052941A>T	uc004dox.3	+	6	2070	c.1772A>T	c.(1771-1773)AAG>ATG	p.K591M	CCNB3_uc004doy.2_Missense_Mutation_p.K591M|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	591					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding	p.K591T(2)		ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TTACAGGAAAAGAAAATTACT	0.408		NA											13	9					0	0	0	0
KLHL4	56062	broad.mit.edu	37	X	86877360	86877360	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:86877360G>T	uc004efb.2	+	5	1256	c.1074G>T	c.(1072-1074)CAG>CAT	p.Q358H	KLHL4_uc004efa.2_Missense_Mutation_p.Q358H	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	358						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						ATGATGTGCAGAATAGGCAAG	0.408		NA											42	14					7.05e-20	1.18e-19	1	0
GPRASP2	114928	broad.mit.edu	37	X	101969964	101969964	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:101969964C>T	uc004ejk.2	+	4	1501	c.167C>T	c.(166-168)TCT>TTT	p.S56F	GPRASP2_uc004ejl.2_Missense_Mutation_p.S56F|GPRASP2_uc004ejm.2_Missense_Mutation_p.S56F|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	56						cytoplasm	protein binding			ovary(1)	1						GAGACCAAGTCTGTGCCTGCG	0.567		NA											55	16					0	0	0	0
GLRA4	441509	broad.mit.edu	37	X	102979899	102979899	+	Silent	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:102979899G>T	uc011mse.1	-	2	550	c.129C>A	c.(127-129)TCC>TCA	p.S43S	GLRA4_uc010nou.2_Silent_p.S43S	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	43	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						AATCAGAGGGGGACATGGGCT	0.468		NA											7	3					0.00307968	0.00404627	1	0
COL4A5	1287	broad.mit.edu	37	X	107844632	107844632	+	Missense_Mutation	SNP	G	G	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:107844632G>T	uc004enz.1	+	26	2160	c.1958G>T	c.(1957-1959)GGG>GTG	p.G653V	COL4A5_uc011mso.1_Missense_Mutation_p.G653V|COL4A5_uc004eob.1_Missense_Mutation_p.G261V	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	653	Triple-helical region.		G -> R (in APSX; juvenile type).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGTCCTAAAGGGGATCCAGGT	0.408		NA							Alport_syndrome_with_Diffuse_Leiomyomatosis				11	2					6.4e-05	8.76e-05	1	0
RGAG1	57529	broad.mit.edu	37	X	109695339	109695339	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:109695339C>T	uc004eor.1	+	3	1740	c.1494C>T	c.(1492-1494)TCC>TCT	p.S498S	RGAG1_uc011msr.1_Silent_p.S498S	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	498										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GAAAGATGTCCACGCCACTGA	0.507		NA											96	33					0	0	0	0
DOCK11	139818	broad.mit.edu	37	X	117700005	117700005	+	Missense_Mutation	SNP	T	T	C			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:117700005T>C	uc004eqp.2	+	8	794	c.731T>C	c.(730-732)ATG>ACG	p.M244T	DOCK11_uc004eqq.2_Missense_Mutation_p.M10T	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	244	PH.				blood coagulation	cytosol	GTP binding			ovary(3)	3						GAACTCAAGATGTTAGATAAA	0.373		NA											88	20					0	0	0	0
RHOXF2B	727940	broad.mit.edu	37	X	119211023	119211023	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:119211023C>T	uc004esj.3	-	2	500	c.310G>A	c.(310-312)GTT>ATT	p.V104I	uc004esi.1_Intron	NM_032498	NP_115887	P0C7M4	RHF2B_HUMAN	Rhox homeobox family, member 2	104						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGTCCTCAACGTTGCCATCG	0.652		NA											11	36					0	0	0	0
THOC2	57187	broad.mit.edu	37	X	122755304	122755304	+	Missense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:122755304C>T	uc004etu.2	-	31	3952	c.3920G>A	c.(3919-3921)CGG>CAG	p.R1307Q	THOC2_uc010nqt.1_RNA|THOC2_uc004etw.1_Missense_Mutation_p.R128Q	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1307	Lys-rich.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						TTTATTTGGCCGCTCTTCCTT	0.343		NA											7	91					0	0	0	0
RBMX2	51634	broad.mit.edu	37	X	129546423	129546423	+	Missense_Mutation	SNP	A	A	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:129546423A>T	uc004evt.2	+	6	634	c.570A>T	c.(568-570)AGA>AGT	p.R190S		NM_016024	NP_057108	Q9Y388	RBMX2_HUMAN	RNA binding motif protein, X-linked 2	190	Lys-rich.						nucleotide binding|RNA binding			breast(3)|ovary(1)	4						CGTCACCCAGACGCAAGACAG	0.448		NA											33	5					0	0	0	0
GPR112	139378	broad.mit.edu	37	X	135429438	135429438	+	Silent	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:135429438C>T	uc004ezu.1	+	6	3864	c.3573C>T	c.(3571-3573)TTC>TTT	p.F1191F	GPR112_uc010nsb.1_Silent_p.F986F|GPR112_uc010nsc.1_Silent_p.F958F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1191	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CATATACTTTCAGTGGTGGTG	0.473		NA											72	25					0	0	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290919	141290919	+	Missense_Mutation	SNP	C	C	G			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:141290919C>G	uc004fbu.1	-	3	1203	c.855G>C	c.(853-855)GAG>GAC	p.E285D		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	285	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCCCGATACTCCAGGTAAT	0.502		NA								HNSCC(46;0.14)			63	16					0	0	0	0
AFF2	2334	broad.mit.edu	37	X	147743456	147743456	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:147743456C>T	uc004fcp.2	+	3	687	c.208C>T	c.(208-210)CGA>TGA	p.R70*	AFF2_uc004fco.2_Nonsense_Mutation_p.R66*|AFF2_uc004fcq.2_Nonsense_Mutation_p.R66*|AFF2_uc004fcr.2_Nonsense_Mutation_p.R66*|AFF2_uc011mxb.1_Nonsense_Mutation_p.R70*|AFF2_uc004fcs.2_Nonsense_Mutation_p.R66*	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	70					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					ACTTGCCAACCGAGTCCAGAA	0.388		NA											67	30					0	0	0	0
FUNDC2	65991	broad.mit.edu	37	X	154261754	154261754	+	Silent	SNP	C	C	T	rs147164809		TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chrX:154261754C>T	uc004fmw.2	+	2	360	c.210C>T	c.(208-210)TTC>TTT	p.F70F		NM_023934	NP_076423	Q9BWH2	FUND2_HUMAN	FUN14 domain containing 2	70						mitochondrion					0	all_cancers(53;3.51e-17)|all_epithelial(53;5.13e-11)|all_lung(58;3.84e-07)|Lung NSC(58;1.2e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GTAAGCTGTTCGGGCAGGAAT	0.458		NA											9	55					0	0	0	0
PAPPA2	60676	broad.mit.edu	37	1	176758976	176758976	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:176758976delG	uc001gkz.2	+	18	5911	c.4747delG	c.(4747-4749)GGAfs	p.G1583fs	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1583	Sushi 3.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCTGGAAGGTGGAATCTGGGA	0.458		NA											18	30	---	---	---	---	NA	NA	NA	NA
TMEM63A	9725	broad.mit.edu	37	1	226034840	226034842	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr1:226034840_226034842delCTG	uc001hpm.1	-	24	2573_2575	c.2323_2325delCAG	c.(2323-2325)CAGdel	p.Q775del		NM_014698	NP_055513	O94886	TM63A_HUMAN	transmembrane protein 63A	775						integral to membrane|lysosomal membrane	nucleotide binding			ovary(1)|breast(1)	2	Breast(184;0.197)					CACCATAGGTCTGCTGCTGCTGC	0.626		NA											7	113	---	---	---	---	NA	NA	NA	NA
GATA3	2625	broad.mit.edu	37	10	8100668	8100668	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr10:8100668delG	uc001ika.2	+	3	1199	c.642delG	c.(640-642)TCGfs	p.S214fs	GATA3_uc001ijz.2_Frame_Shift_Del_p.S214fs	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	214					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						CCTCCTCGTCGACCCACCACC	0.682		NA	F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						23	49	---	---	---	---	NA	NA	NA	NA
E2F8	79733	broad.mit.edu	37	11	19256552	19256556	+	Frame_Shift_Del	DEL	TATGT	TATGT	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:19256552_19256556delTATGT	uc001mpm.2	-	5	1023_1027	c.501_505delACATA	c.(499-507)TTACATATGfs	p.L167fs	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Frame_Shift_Del_p.L167fs	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	167_169	Potential.				cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CGGCTCACCATATGTAAACTCTCTA	0.444		NA											10	25	---	---	---	---	NA	NA	NA	NA
AHNAK	79026	broad.mit.edu	37	11	62298255	62298255	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr11:62298255delC	uc001ntl.2	-	5	3934	c.3634delG	c.(3634-3636)GATfs	p.D1212fs	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1212					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ACATCCACATCCCCTTTGACT	0.478		NA											16	456	---	---	---	---	NA	NA	NA	NA
APOB48R	55911	broad.mit.edu	37	16	28506849	28506850	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr16:28506849_28506850insA	uc002dqb.1	+	2	497_498	c.487_488insA	c.(487-489)CATfs	p.H163fs	uc010vct.1_Intron|APOB48R_uc010byg.1_Translation_Start_Site	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	163	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCAGGAGTCCCATGAGCAGGAA	0.619		NA											3	3	---	---	---	---	NA	NA	NA	NA
DNAH9	1770	broad.mit.edu	37	17	11687739	11687739	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr17:11687739delC	uc002gne.2	+	41	8012	c.7944delC	c.(7942-7944)ATCfs	p.I2648fs	DNAH9_uc010coo.2_Frame_Shift_Del_p.I1942fs	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2648	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGAAATCCATCCCCCCACTGA	0.532		NA											64	118	---	---	---	---	NA	NA	NA	NA
NCAN	1463	broad.mit.edu	37	19	19349086	19349086	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr19:19349086delG	uc002nlz.2	+	11	3374	c.3275delG	c.(3274-3276)TGGfs	p.W1092fs	NCAN_uc010ecc.1_Frame_Shift_Del_p.W656fs|NCAN_uc002nma.2_5'Flank	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1092	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GACCGCGGCTGGCATAAGTTC	0.662		NA											42	69	---	---	---	---	NA	NA	NA	NA
COL4A3	1285	broad.mit.edu	37	2	228173623	228173623	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr2:228173623delG	uc002vom.1	+	49	4633	c.4471delG	c.(4471-4473)GGCfs	p.G1491fs	COL4A3_uc002von.1_Frame_Shift_Del_p.G1491fs|COL4A3_uc002voo.1_Intron|COL4A3_uc002vop.1_Intron|uc002voq.1_Intron|uc002vor.1_Intron|COL4A3_uc010fxf.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1491	Required for the anti-angiogenic activity of tumstatin.|Collagen IV NC1.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		AGGAACTCTTGGCAGCTGCCT	0.368		NA											75	21	---	---	---	---	NA	NA	NA	NA
C4orf21	55345	broad.mit.edu	37	4	113461126	113461127	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:113461126_113461127insT	uc003iau.2	-	27	6275_6276	c.6064_6065insA	c.(6064-6066)AGAfs	p.R2022fs	C4orf21_uc003iav.2_RNA|C4orf21_uc003iat.2_Frame_Shift_Ins_p.R480fs	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	844						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		AACATTCATTCTTTTTTCTGAA	0.406		NA											20	45	---	---	---	---	NA	NA	NA	NA
CCNA2	890	broad.mit.edu	37	4	122743676	122743678	+	In_Frame_Del	DEL	CTT	CTT	-	rs140275604	by1000genomes	TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr4:122743676_122743678delCTT	uc003iec.3	-	2	642_644	c.337_339delAAG	c.(337-339)AAGdel	p.K113del		NM_001237	NP_001228	P20248	CCNA2_HUMAN	cyclin A	113					cell division|mitosis|mitotic cell cycle G2/M transition DNA damage checkpoint|Ras protein signal transduction|regulation of cyclin-dependent protein kinase activity	cytoplasm|nucleoplasm	protein kinase binding			ovary(1)	1						ATTCAGCTGGCTTCTTCTGAGCT	0.433		NA											10	130	---	---	---	---	NA	NA	NA	NA
PGBD1	84547	broad.mit.edu	37	6	28269721	28269721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CN-6992-01A-11D-1912-08	TCGA-CN-6992-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	7a70356c-74a3-40c3-bd32-3049da642831	a6505059-a7f7-44bb-9d7b-9554b28effc9	g.chr6:28269721delT	uc003nky.2	+	7	2460	c.2090delT	c.(2089-2091)CTGfs	p.L697fs	PGBD1_uc003nkz.2_Frame_Shift_Del_p.L697fs	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	697					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						ATTATCAGTCTGTGCTCCAAT	0.383		NA											37	71	---	---	---	---	NA	NA	NA	NA
