Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
HSPG2	3339	broad.mit.edu	37	1	22157584	22157584	+	Splice_Site	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:22157584C>G	uc001bfj.2	-	85	11603	c.11563_splice	c.e85-1	p.N3855_splice	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Splice_Site_p.N3856_splice	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor						angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GACCGCCATTCTGCAAAGCAG	0.637		NA											3	18					0	0	0	0
FNDC5	252995	broad.mit.edu	37	1	33330273	33330273	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:33330273G>T	uc001bwg.2	-	5	615	c.400C>A	c.(400-402)CGC>AGC	p.R134S	FNDC5_uc001bwe.2_RNA|FNDC5_uc001bwf.1_Missense_Mutation_p.R134S	NM_153756	NP_715637	Q8NAU1	FNDC5_HUMAN	fibronectin type III domain containing 5	193	Cytoplasmic (Potential).					integral to membrane|peroxisomal membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				ACCTTGCTGCGGAGAAGCCCC	0.577		NA											11	38					3.07e-06	5.41e-06	1	0
CSMD2	114784	broad.mit.edu	37	1	34092182	34092182	+	Splice_Site	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:34092182C>T	uc001bxn.1	-	33	5110	c.5081_splice	c.e33-1	p.G1694_splice	CSMD2_uc001bxm.1_Splice_Site_p.G1734_splice|CSMD2_uc001bxo.1_Splice_Site_p.G607_splice	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2							integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGTGATTCTCCTGCCGAGATA	0.557		NA											5	11					0	0	0	0
ZMYM1	79830	broad.mit.edu	37	1	35580175	35580175	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:35580175G>C	uc001bym.2	+	11	2892	c.2744G>C	c.(2743-2745)GGA>GCA	p.G915A	ZMYM1_uc001byn.2_Missense_Mutation_p.G915A|ZMYM1_uc010ohu.1_Missense_Mutation_p.G896A|ZMYM1_uc001byo.2_Missense_Mutation_p.G555A|ZMYM1_uc009vut.2_Missense_Mutation_p.G840A	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	915						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATCTGGGATGGAACAGAGGAA	0.294		NA											4	19					0	0	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45516821	45516821	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:45516821G>C	uc001cnd.2	-	5	1585	c.1357C>G	c.(1357-1359)CTG>GTG	p.L453V		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	453							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					CCATCCTCCAGGGGACAGACA	0.517		NA											35	56					0	0	0	0
ACOT11	26027	broad.mit.edu	37	1	55059688	55059688	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:55059688C>T	uc001cxm.1	+	5	529	c.447C>T	c.(445-447)TTC>TTT	p.F149F	ACOT11_uc001cxj.1_Silent_p.F27F|ACOT11_uc001cxk.2_Silent_p.F115F|ACOT11_uc001cxl.1_Silent_p.F149F	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	149	Acyl coenzyme A hydrolase 1.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						TGGCCACCTTCGTGGCCCGCC	0.632		NA											8	49					0	0	0	0
DPYD	1806	broad.mit.edu	37	1	98015229	98015229	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:98015229T>A	uc001drv.2	-	12	1548	c.1411A>T	c.(1411-1413)ACT>TCT	p.T471S		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	471	FAD (Potential).				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GCTTCACTAGTTTGCATAGTT	0.403		NA											10	21					0	0	0	0
SYPL2	284612	broad.mit.edu	37	1	110020605	110020605	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:110020605T>A	uc001dxp.2	+	5	988	c.622T>A	c.(622-624)TCT>ACT	p.S208T	SYPL2_uc001dxo.2_Missense_Mutation_p.S208T|SYPL2_uc010ovk.1_Intron|SYPL2_uc001dxq.2_Missense_Mutation_p.S116T	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	208	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGCCACGCCCTCTATGGGCCT	0.637		NA											9	29					0	0	0	0
TRIM45	80263	broad.mit.edu	37	1	117656090	117656090	+	Silent	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:117656090C>G	uc001egz.2	-	5	2073	c.1485G>C	c.(1483-1485)GTG>GTC	p.V495V	TRIM45_uc009whe.2_Silent_p.V477V|TRIM45_uc001eha.2_Silent_p.V391V	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	495	Filamin.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		TCCTCACCATCACAGTGAATG	0.552		NA											8	14					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152277553	152277553	+	Missense_Mutation	SNP	C	C	T	rs147429418	byFrequency	TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:152277553C>T	uc001ezu.1	-	3	9845	c.9809G>A	c.(9808-9810)CGC>CAC	p.R3270H		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3270	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCTGGAGCGGTCTGCAGA	0.577		NA							Ichthyosis				93	380					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152279054	152279054	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:152279054C>T	uc001ezu.1	-	3	8344	c.8308G>A	c.(8308-8310)GCA>ACA	p.A2770T		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2770	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGTCTTGTGCCTGCTCATGG	0.587		NA							Ichthyosis				17	587					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152283044	152283044	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:152283044A>G	uc001ezu.1	-	3	4354	c.4318T>C	c.(4318-4320)TCT>CCT	p.S1440P	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1440	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAGAGGAAAGACCTTGAACGT	0.587		NA							Ichthyosis				15	273					0	0	0	0
CLK2	1196	broad.mit.edu	37	1	155240769	155240769	+	Splice_Site	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:155240769C>G	uc001fjy.2	-	2	291	c.1_splice	c.e2-1	p.M1_splice	RAG1AP1_uc010pey.1_Intron|CLK2_uc001fjw.2_Splice_Site_p.M1_splice|CLK2_uc001fjx.2_Splice_Site|CLK2_uc009wqm.2_Splice_Site_p.M1_splice	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2							nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GATGCGGCATCTGGAAGGCAA	0.527		NA						Other_conserved_DNA_damage_response_genes					16	144					0	0	0	0
BCAN	63827	broad.mit.edu	37	1	156621474	156621474	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:156621474G>A	uc001fpp.2	+	7	1626	c.1290G>A	c.(1288-1290)ACG>ACA	p.T430T	BCAN_uc001fpo.2_Silent_p.T430T	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	430	Glu-rich.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCCCTAGGACGCTCCTAGGTA	0.557		NA											16	80					0	0	0	0
NTRK1	4914	broad.mit.edu	37	1	156849868	156849868	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:156849868C>T	uc001fqh.1	+	16	2180	c.2124C>T	c.(2122-2124)AGC>AGT	p.S708S	NTRK1_uc001fqf.1_Silent_p.S672S|NTRK1_uc009wsi.1_Silent_p.S407S|NTRK1_uc001fqi.1_Silent_p.S702S|NTRK1_uc009wsk.1_Silent_p.S705S	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	708	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CCACCGAGAGCGACGTGTGGA	0.647		NA	T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			5	82					0	0	0	0
FCRL3	115352	broad.mit.edu	37	1	157667698	157667698	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:157667698G>T	uc001frb.2	-	5	602	c.310C>A	c.(310-312)CTG>ATG	p.L104M	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.L104M|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Translation_Start_Site|FCRL3_uc001frc.1_Missense_Mutation_p.L104M	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	104	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					AAAGCCTGCAGGATCAGCCAG	0.468		NA											7	27					8.13e-05	0.000138603	1	0
SPTA1	6708	broad.mit.edu	37	1	158595971	158595971	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:158595971C>A	uc001fst.1	-	42	6074	c.5875G>T	c.(5875-5877)GAC>TAC	p.D1959Y		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1959	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCACCAAGGTCTGCACCATTG	0.423		NA											8	34					1.13e-05	1.97e-05	1	0
OR6K6	128371	broad.mit.edu	37	1	158724934	158724934	+	Missense_Mutation	SNP	T	T	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:158724934T>G	uc001fsw.1	+	1	329	c.329T>G	c.(328-330)CTG>CGG	p.L110R		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	110	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					CCCAAGATGCTGTCCTGCCTA	0.512		NA											35	113					0	0	0	0
IFI16	3428	broad.mit.edu	37	1	159021690	159021690	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:159021690C>G	uc001ftg.2	+	9	2009	c.1719C>G	c.(1717-1719)ATC>ATG	p.I573M	IFI16_uc010pis.1_Missense_Mutation_p.I573M|IFI16_uc001fth.2_Missense_Mutation_p.I116M|IFI16_uc010pit.1_Missense_Mutation_p.I172M	NM_005531	NP_005522	Q16666	IF16_HUMAN	interferon, gamma-inducible protein 16	629	HIN-200 2.				cell proliferation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|monocyte differentiation|negative regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	cytoplasm|nuclear speck|nucleolus	double-stranded DNA binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)					CAAAGAAGATCATTGCCATAG	0.423		NA											13	59					0	0	0	0
CASQ1	844	broad.mit.edu	37	1	160160609	160160609	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:160160609T>A	uc010pja.1	+	1	325	c.68T>A	c.(67-69)CTG>CAG	p.L23Q		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	23	Poly-Leu.					mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTGTTGCTGCTGGTGCTAGGG	0.592		NA											9	38					0	0	0	0
DCAF8	50717	broad.mit.edu	37	1	160209906	160209906	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:160209906C>G	uc001fvo.2	-	4	616	c.304G>C	c.(304-306)GAG>CAG	p.E102Q	DCAF8_uc001fvn.2_Missense_Mutation_p.E102Q|DCAF8_uc009wth.2_Missense_Mutation_p.E102Q|DCAF8_uc010pjb.1_Missense_Mutation_p.E102Q|DCAF8_uc010pjc.1_Missense_Mutation_p.E256Q|DCAF8_uc001fvq.3_Missense_Mutation_p.E102Q|DCAF8_uc001fvp.3_Missense_Mutation_p.E102Q|uc010pjd.1_3'UTR	NM_015726	NP_056541	Q5TAQ9	DCAF8_HUMAN	DDB1 and CUL4 associated factor 8	102						CUL4 RING ubiquitin ligase complex	protein binding			skin(2)	2						tcctcttcctcttcctctGAG	0.438		NA											3	28					0	0	0	0
F5	2153	broad.mit.edu	37	1	169511663	169511664	+	Nonsense_Mutation	DNP	TA	TA	AT			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:169511663_169511664TA>AT	uc001ggg.1	-	13	2809_2810	c.2664_2665TA>AT	c.(2662-2667)CATAAA>CAATAA	p.888_889HK>Q*		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	888_889	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CTCCCAACTTTATGTGCTAGTA	0.475		NA											32	133					0	0	0	0
TNN	63923	broad.mit.edu	37	1	175086104	175086104	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:175086104G>T	uc001gkl.1	+	10	2262	c.2149G>T	c.(2149-2151)GAC>TAC	p.D717Y		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	717	Fibronectin type-III 6.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCTGGTGACCGACCGGGTGAC	0.512		NA											25	119					2.45e-14	4.86e-14	1	0
PAPPA2	60676	broad.mit.edu	37	1	176525600	176525600	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:176525600G>C	uc001gkz.2	+	2	1306	c.142G>C	c.(142-144)GAA>CAA	p.E48Q	PAPPA2_uc001gky.1_Missense_Mutation_p.E48Q|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	48					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GTTGGAAGGAGAACGTTGTTG	0.572		NA											17	98					0	0	0	0
IER5	51278	broad.mit.edu	37	1	181058479	181058479	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:181058479G>C	uc001got.3	+	1	842	c.441G>C	c.(439-441)CCG>CCC	p.P147P		NM_016545	NP_057629	Q5VY09	IER5_HUMAN	immediate early response 5	147										pancreas(1)	1						TGGAGGGGCCGCGCCAGGCGG	0.746		NA											3	9					0	0	0	0
CFHR2	3080	broad.mit.edu	37	1	196920114	196920114	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:196920114G>T	uc001gtq.1	+	3	463	c.386G>T	c.(385-387)TGT>TTT	p.C129F	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	129	Sushi 2.					extracellular region				skin(2)|ovary(1)	3						AACATTTCATGTGTAGAACGG	0.383		NA											7	51					0.00448238	0.00736304	1	0
CRB1	23418	broad.mit.edu	37	1	197403914	197403914	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:197403914C>A	uc001gtz.2	+	9	3056	c.2921C>A	c.(2920-2922)ACC>AAC	p.T974N	CRB1_uc010poz.1_Missense_Mutation_p.T950N|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.T862N|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Missense_Mutation_p.T455N|CRB1_uc001gub.1_Missense_Mutation_p.T623N	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	974	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AGAGAACTCACCAATATCACA	0.333		NA											8	42					0.00307968	0.00507958	1	0
PROX1	5629	broad.mit.edu	37	1	214170122	214170122	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:214170122G>C	uc001hkh.2	+	2	516	c.244G>C	c.(244-246)GAT>CAT	p.D82H	PROX1_uc001hkg.1_Missense_Mutation_p.D82H	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	82					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		CTCGTATGAAGATGCCATGAT	0.483		NA											4	83					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215821936	215821936	+	Missense_Mutation	SNP	G	G	A	rs139065588		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:215821936G>A	uc001hku.1	-	66	14903	c.14516C>T	c.(14515-14517)ACG>ATG	p.T4839M		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4839	Extracellular (Potential).|Fibronectin type-III 34.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGAGGCCAGCGTCCCGATTTG	0.572		NA								HNSCC(13;0.011)			23	65					0	0	0	0
TTC13	79573	broad.mit.edu	37	1	231076226	231076226	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:231076226C>A	uc001huf.3	-	7	780	c.749G>T	c.(748-750)CGG>CTG	p.R250L	TTC13_uc009xfi.2_Missense_Mutation_p.R197L|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Missense_Mutation_p.R197L|TTC13_uc009xfk.1_Missense_Mutation_p.R140L	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	250	TPR 3.						binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		TCTGTACAGCCGTGCTGAGGG	0.423		NA											7	35					0.00198382	0.00329456	1	0
ACTN2	88	broad.mit.edu	37	1	236900470	236900470	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:236900470G>C	uc001hyf.2	+	9	1036	c.832G>C	c.(832-834)GAG>CAG	p.E278Q	ACTN2_uc001hyg.2_Missense_Mutation_p.E70Q|ACTN2_uc009xgi.1_Missense_Mutation_p.E278Q|ACTN2_uc010pxu.1_Missense_Mutation_p.E63Q|ACTN2_uc001hyh.2_5'Flank	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	278					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TGTGAATCAAGAGAATGAGAG	0.512		NA											7	45					0	0	0	0
MTR	4548	broad.mit.edu	37	1	236979822	236979822	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:236979822T>A	uc001hyi.3	+	8	1166	c.743T>A	c.(742-744)GTG>GAG	p.V248E	MTR_uc010pxv.1_RNA|MTR_uc010pxw.1_5'UTR|MTR_uc010pxx.1_Missense_Mutation_p.V248E|MTR_uc010pxy.1_Missense_Mutation_p.V248E|MTR_uc009xgj.1_Missense_Mutation_p.C79S	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	248	Hcy-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	GTCATCAGCGTGTCTCATGGA	0.458		NA											26	101					0	0	0	0
WDR64	128025	broad.mit.edu	37	1	241953918	241953918	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr1:241953918C>G	uc001hzf.1	+	14	1699	c.1546C>G	c.(1546-1548)CTA>GTA	p.L516V	WDR64_uc001hzg.1_Missense_Mutation_p.L429V	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	963										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			CTCAGTGTCTCTACTTTTCAA	0.353		NA											26	84					0	0	0	0
C10orf18	54906	broad.mit.edu	37	10	5799599	5799599	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:5799599G>A	uc001iij.2	+	17	7474	c.6849G>A	c.(6847-6849)GTG>GTA	p.V2283V	C10orf18_uc001iik.2_Silent_p.V1127V	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	2283										ovary(1)|central_nervous_system(1)	2						GAGGCTTTGTGATATCAGATG	0.428		NA											6	155					0	0	0	0
CELF2	10659	broad.mit.edu	37	10	11047378	11047378	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:11047378A>G	uc001iki.3	+	1	120	c.28A>G	c.(28-30)ATG>GTG	p.M10V	CELF2_uc010qbi.1_5'UTR|CELF2_uc010qbj.1_Missense_Mutation_p.M10V	NM_001025077	NP_001020248	O95319	CELF2_HUMAN	CUG triplet repeat, RNA binding protein 2	10	Necessary for RNA-binding, TNNT2 exon 5 and NMDA R1 exon 21 inclusion.				mRNA processing|regulation of heart contraction	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding				0						CGCTGTTACTATGAGAAATGA	0.413		NA											6	182					0	0	0	0
ITGA8	8516	broad.mit.edu	37	10	15655677	15655677	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:15655677G>C	uc001ioc.1	-	15	1535	c.1535C>G	c.(1534-1536)TCT>TGT	p.S512C	ITGA8_uc010qcb.1_Missense_Mutation_p.S497C	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	512	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						AGATGTCATAGAGTCTGGAAC	0.313		NA											17	112					0	0	0	0
MYO3A	53904	broad.mit.edu	37	10	26414348	26414348	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:26414348G>A	uc001isn.2	+	19	2285	c.1925G>A	c.(1924-1926)CGG>CAG	p.R642Q	MYO3A_uc009xko.1_Missense_Mutation_p.R642Q|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	642	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CTTTGCATTCGGGCAGATGAG	0.418		NA											66	40					0	0	0	0
PARD3	56288	broad.mit.edu	37	10	34420402	34420402	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:34420402C>G	uc010qej.1	-	23	3538	c.3538G>C	c.(3538-3540)GAG>CAG	p.E1180Q	PARD3_uc010qek.1_Missense_Mutation_p.E1177Q|PARD3_uc010qel.1_Missense_Mutation_p.E1143Q|PARD3_uc010qem.1_Missense_Mutation_p.E1164Q|PARD3_uc010qen.1_Missense_Mutation_p.E1134Q|PARD3_uc010qeo.1_Missense_Mutation_p.E1097Q|PARD3_uc010qep.1_Missense_Mutation_p.E1090Q|PARD3_uc010qeq.1_Missense_Mutation_p.E1068Q	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1180					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CAGGGTTGCTCAAAACTATAG	0.458		NA											4	47					0	0	0	0
PARD3	56288	broad.mit.edu	37	10	34420469	34420469	+	Silent	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:34420469C>G	uc010qej.1	-	23	3471	c.3471G>C	c.(3469-3471)CTG>CTC	p.L1157L	PARD3_uc010qek.1_Silent_p.L1154L|PARD3_uc010qel.1_Silent_p.L1120L|PARD3_uc010qem.1_Silent_p.L1141L|PARD3_uc010qen.1_Silent_p.L1111L|PARD3_uc010qeo.1_Silent_p.L1074L|PARD3_uc010qep.1_Silent_p.L1067L|PARD3_uc010qeq.1_Silent_p.L1045L	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	1157	Potential.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				ATTCTTGCCTCAGACGCTGTA	0.433		NA											9	62					0	0	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37440991	37440991	+	Missense_Mutation	SNP	C	C	T	rs45515098		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:37440991C>T	uc001iza.1	+	12	1580	c.1481C>T	c.(1480-1482)CCG>CTG	p.P494L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	550						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TTTATAGATCCGATGTTCCCA	0.294		NA											9	43					0	0	0	0
ZNF33A	7581	broad.mit.edu	37	10	38344884	38344884	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:38344884G>A	uc001izh.2	+	5	2007	c.1829G>A	c.(1828-1830)TGT>TAT	p.C610Y	ZNF33A_uc001izg.2_Missense_Mutation_p.C611Y|ZNF33A_uc010qev.1_Missense_Mutation_p.C617Y|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	610	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						CCCTATGAATGTAATGAATGT	0.363		NA											11	58					0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43654256	43654256	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:43654256G>T	uc001jan.2	+	3	1090	c.755G>T	c.(754-756)CGC>CTC	p.R252L	CSGALNACT2_uc001jam.1_Missense_Mutation_p.R252L	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	252	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						ACCCTCTTCCGCCCTTTTGGA	0.393		NA											11	50					3.07e-06	5.41e-06	1	0
ANK3	288	broad.mit.edu	37	10	61815535	61815535	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:61815535C>G	uc001jky.2	-	42	13138	c.12946G>C	c.(12946-12948)GAA>CAA	p.E4316Q	ANK3_uc001jkw.2_Missense_Mutation_p.E940Q|ANK3_uc009xpa.2_Missense_Mutation_p.E940Q|ANK3_uc001jkx.2_Missense_Mutation_p.E984Q|ANK3_uc010qih.1_Missense_Mutation_p.E1807Q|ANK3_uc001jkz.3_Missense_Mutation_p.E1800Q|ANK3_uc001jkv.2_Missense_Mutation_p.E339Q	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4316					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTAGTCTCTTCTATTATAAGC	0.438		NA											6	218					0	0	0	0
AGAP5	729092	broad.mit.edu	37	10	75457410	75457410	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:75457410C>T	uc009xri.2	-	1	145	c.104G>A	c.(103-105)GGA>GAA	p.G35E	AGAP5_uc001juu.3_5'UTR	NM_001144000	NP_001137472	A6NIR3	AGAP5_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	35					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GTCCCCAGCTCCTGCCTCATA	0.582		NA											21	152					0	0	0	0
WAPAL	23063	broad.mit.edu	37	10	88232004	88232004	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:88232004C>G	uc001kdo.2	-	7	2433	c.1991G>C	c.(1990-1992)GGC>GCC	p.G664A	WAPAL_uc009xsv.2_5'Flank|WAPAL_uc001kdn.2_Missense_Mutation_p.G701A|WAPAL_uc009xsw.2_Missense_Mutation_p.G658A	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	664	WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						GCTCTTTAAGCCACTTAACAA	0.343		NA											4	41					0	0	0	0
ABLIM1	3983	broad.mit.edu	37	10	116444079	116444079	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:116444079C>A	uc010qsh.1	-	1	336	c.34G>T	c.(34-36)GAC>TAC	p.D12Y	ABLIM1_uc010qsi.1_Missense_Mutation_p.D12Y|ABLIM1_uc009xyp.2_Missense_Mutation_p.D6Y|ABLIM1_uc001lbz.1_Intron	NM_001003408	NP_001003408	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform c	Error:Variant_position_missing_in_O14639_after_alignment					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		TGATGAGGGTCCGTGAGCTCA	0.468		NA											12	62					3.27e-08	6.09e-08	1	0
KCNK18	338567	broad.mit.edu	37	10	118969465	118969465	+	Silent	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:118969465T>C	uc010qsr.1	+	3	810	c.810T>C	c.(808-810)GAT>GAC	p.D270D		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	270	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		GCAACCTGGATGAAGTTGGAC	0.527		NA											18	93					0	0	0	0
RAB11FIP2	22841	broad.mit.edu	37	10	119768713	119768713	+	Silent	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:119768713A>T	uc001ldj.1	-	5	1775	c.1335T>A	c.(1333-1335)ACT>ACA	p.T445T	RAB11FIP2_uc009xyz.1_Silent_p.T465T	NM_014904	NP_055719	Q7L804	RFIP2_HUMAN	RAB11 family interacting protein 2	445	FIP-RBD.				protein transport	plasma membrane|recycling endosome membrane	protein homodimerization activity				0		Colorectal(252;0.235)		all cancers(201;0.0238)		GATACCCTGCAGTGGCATCAA	0.458		NA											25	73					0	0	0	0
WDR11	55717	broad.mit.edu	37	10	122618278	122618278	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr10:122618278G>A	uc010qtf.1	+	3	560	c.322G>A	c.(322-324)GAG>AAG	p.E108K	WDR11_uc010qte.1_Intron|WDR11_uc001lfd.1_5'UTR	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	108	WD 1.					integral to membrane					0						AGCTCAGTGTGAGATCCAAGA	0.458		NA											6	41					0	0	0	0
OR51G1	79324	broad.mit.edu	37	11	4945474	4945474	+	Silent	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:4945474G>T	uc010qyr.1	-	1	96	c.96C>A	c.(94-96)CCC>CCA	p.P32P		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGAAGCAGAAGGGAATAGAGA	0.468		NA											11	50					1.34e-11	2.59e-11	1	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5653889	5653889	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:5653889G>T	uc001mbf.2	+	8	1634	c.1390G>T	c.(1390-1392)GAG>TAG	p.E464*	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Nonsense_Mutation_p.E110*|TRIM34_uc009yeq.2_5'UTR|TRIM34_uc001mbi.2_Nonsense_Mutation_p.E110*|TRIM34_uc001mbj.2_Nonsense_Mutation_p.E110*	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	464						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		CTTCTGTAAGGAGGATAGGAA	0.493		NA											4	23					0.00024832	0.000421656	1	0
OR52E6	390078	broad.mit.edu	37	11	5862952	5862952	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:5862952T>A	uc010qzq.1	-	1	176	c.176A>T	c.(175-177)GAG>GTG	p.E59V	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTACATGGGCTCATGGAGACT	0.463		NA											17	98					0	0	0	0
OR2D2	120776	broad.mit.edu	37	11	6913477	6913477	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:6913477C>A	uc010rau.1	-	1	255	c.255G>T	c.(253-255)CTG>CTT	p.L85L		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TTCTGGAAAGCAGGTGGACTA	0.468		NA											9	52					0.000274275	0.000464424	1	0
NLRP14	338323	broad.mit.edu	37	11	7064307	7064307	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:7064307G>A	uc001mfb.1	+	4	1373	c.1050G>A	c.(1048-1050)ATG>ATA	p.M350I		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	350	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GGTGGGCCATGAAAGTATTCA	0.428		NA											15	87					0	0	0	0
OR10A3	26496	broad.mit.edu	37	11	7960962	7960962	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:7960962C>T	uc010rbi.1	-	1	106	c.106G>A	c.(106-108)GTG>ATG	p.V36M		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGGGTCACCACATAAATAACT	0.458		NA											16	43					0	0	0	0
ABCC8	6833	broad.mit.edu	37	11	17482165	17482165	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:17482165G>T	uc001mnc.2	-	6	1007	c.881C>A	c.(880-882)GCC>GAC	p.A294D	ABCC8_uc010rcy.1_Missense_Mutation_p.A293D	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	294	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CCTCCCGAAGGCATGGCTGAG	0.642		NA											14	73					3.46e-05	5.99e-05	1	0
IGSF22	283284	broad.mit.edu	37	11	18741305	18741305	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:18741305C>A	uc009yht.2	-	7	844	c.654G>T	c.(652-654)CTG>CTT	p.L218L	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	218	Lys-rich.									ovary(4)|large_intestine(2)|kidney(1)	7						GCTTCCTGAGCAGCCCCCGAA	0.517		NA											19	158					1.02e-10	1.94e-10	1	0
SLC6A5	9152	broad.mit.edu	37	11	20639323	20639323	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:20639323G>T	uc001mqd.2	+	7	1426	c.1153G>T	c.(1153-1155)GGG>TGG	p.G385W	SLC6A5_uc009yic.2_Missense_Mutation_p.G150W	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	385	Extracellular (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GATTTCTGCAGGGATTGAATA	0.368		NA											10	89					0.000978159	0.00164478	1	0
FBXO3	26273	broad.mit.edu	37	11	33768856	33768856	+	Silent	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:33768856T>C	uc001muz.2	-	10	1087	c.1059A>G	c.(1057-1059)CCA>CCG	p.P353P	FBXO3_uc010rej.1_Silent_p.P40P|FBXO3_uc001muy.2_Silent_p.P240P|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Silent_p.P353P|FBXO3_uc001mvb.1_Silent_p.P348P|FBXO3_uc010rek.1_RNA	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	353	ApaG.				proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		GGCTGATGATTGGAAATTCAC	0.343		NA											14	35					0	0	0	0
HARBI1	283254	broad.mit.edu	37	11	46637351	46637351	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:46637351C>G	uc001ncy.2	-	2	685	c.437G>C	c.(436-438)GGG>GCG	p.G146A	KIAA0652_uc009yld.2_5'Flank|KIAA0652_uc001nda.2_5'Flank|KIAA0652_uc001ndb.2_5'Flank|KIAA0652_uc001ncz.2_5'Flank|KIAA0652_uc001ndc.2_5'Flank|KIAA0652_uc010rgv.1_5'Flank	NM_173811	NP_776172	Q96MB7	HARB1_HUMAN	harbinger transposase derived 1	146						cytoplasm|nucleus	metal ion binding|nuclease activity				0						GTCAACCACCCCCATCACCCC	0.512		NA											46	195					0	0	0	0
OR4C15	81309	broad.mit.edu	37	11	55322242	55322242	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:55322242C>A	uc010rig.1	+	1	460	c.460C>A	c.(460-462)CTC>ATC	p.L154I		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	100	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CATGATGCAGCTCTTTGCTGA	0.478		NA								HNSCC(20;0.049)			29	110					1.25e-16	2.5e-16	1	0
OR4C15	81309	broad.mit.edu	37	11	55322833	55322833	+	Missense_Mutation	SNP	A	A	T	rs112163324		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:55322833A>T	uc010rig.1	+	1	1051	c.1051A>T	c.(1051-1053)ATG>TTG	p.M351L		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAAACAGGCCATGAGGAGAAT	0.333		NA								HNSCC(20;0.049)			9	55					0	0	0	0
OR8K3	219473	broad.mit.edu	37	11	56086330	56086330	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:56086330C>A	uc010rjf.1	+	1	548	c.548C>A	c.(547-549)CCT>CAT	p.P183H		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					GACAGTCTCCCTTTGTTACCT	0.328		NA											18	77					5.35e-07	9.63e-07	1	0
P2RX3	5024	broad.mit.edu	37	11	57118259	57118259	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:57118259C>T	uc001nju.2	+	8	805	c.729C>T	c.(727-729)ATC>ATT	p.I243I		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	243	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						GCATTAAGATCGGCTGGGTGT	0.622		NA											4	26					0	0	0	0
OR4D11	219986	broad.mit.edu	37	11	59271774	59271774	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:59271774C>T	uc001noa.1	+	1	726	c.726C>T	c.(724-726)TCC>TCT	p.S242S		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTGCACCTCCCACATCACTG	0.547		NA											28	160					0	0	0	0
MS4A5	64232	broad.mit.edu	37	11	60215208	60215208	+	Silent	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:60215208T>C	uc001npo.2	+	5	665	c.579T>C	c.(577-579)GAT>GAC	p.D193D		NM_023945	NP_076434	Q9H3V2	MS4A5_HUMAN	membrane-spanning 4-domains, subfamily A, member	193	Cytoplasmic (Potential).					integral to membrane	receptor activity			large_intestine(1)|ovary(1)	2						ACTCAGAGGATTGTGATTGTG	0.353		NA											16	88					0	0	0	0
SART1	9092	broad.mit.edu	37	11	65744017	65744017	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:65744017G>A	uc001ogl.2	+	13	1816	c.1724G>A	c.(1723-1725)CGC>CAC	p.R575H		NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	575					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						GCTGGCAATCGCGAGGAGCAG	0.687		NA											8	39					0	0	0	0
SPTBN2	6712	broad.mit.edu	37	11	66454925	66454925	+	Missense_Mutation	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:66454925T>C	uc001ojd.2	-	34	6767	c.6695A>G	c.(6694-6696)GAG>GGG	p.E2232G	SPTBN2_uc001ojc.1_Missense_Mutation_p.R93G	NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	2232	PH.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCCGAAGGCCTCCATCTCCTG	0.642		NA											3	93					0	0	0	0
UVRAG	7405	broad.mit.edu	37	11	75851885	75851885	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:75851885G>A	uc001oxc.2	+	15	1769	c.1528G>A	c.(1528-1530)GAG>AAG	p.E510K	UVRAG_uc010rrw.1_Missense_Mutation_p.E409K|UVRAG_uc001oxd.2_Missense_Mutation_p.E138K|UVRAG_uc010rrx.1_Missense_Mutation_p.E138K|UVRAG_uc010rry.1_Missense_Mutation_p.E66K	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	510					DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						GGCCAGCTCTGAGAATGAGAG	0.527		NA											7	104					0	0	0	0
AQP11	282679	broad.mit.edu	37	11	77301379	77301379	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:77301379C>A	uc001oyj.2	+	1	700	c.342C>A	c.(340-342)CCC>CCA	p.P114P	AQP11_uc009yuu.2_Intron	NM_173039	NP_766627	Q8NBQ7	AQP11_HUMAN	aquaporin 11	114						cell surface|integral to membrane	transporter activity				0	all_cancers(14;1.75e-17)|all_epithelial(13;4.7e-20)|Ovarian(111;0.249)		Epithelial(5;4.73e-49)|BRCA - Breast invasive adenocarcinoma(5;1.4e-30)			GCATGTCCCCCGAGACGGGTG	0.607		NA											15	83					1.45e-14	2.89e-14	1	0
DLG2	1740	broad.mit.edu	37	11	83673932	83673932	+	Missense_Mutation	SNP	T	T	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:83673932T>G	uc001paj.2	-	9	1324	c.1021A>C	c.(1021-1023)ACC>CCC	p.T341P	DLG2_uc001pai.2_Missense_Mutation_p.T290P|DLG2_uc010rsy.1_Missense_Mutation_p.T308P|DLG2_uc010rsz.1_Missense_Mutation_p.T341P|DLG2_uc010rta.1_Missense_Mutation_p.T341P|DLG2_uc001pak.2_Missense_Mutation_p.T446P|DLG2_uc010rtb.1_Missense_Mutation_p.T308P|DLG2_uc001pal.1_Missense_Mutation_p.T341P|DLG2_uc001pam.1_Missense_Mutation_p.T380P	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	341						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCTGACCTGGTGTAGTCGTCG	0.418		NA											4	218					0	0	0	0
KBTBD3	143879	broad.mit.edu	37	11	105924580	105924580	+	Missense_Mutation	SNP	T	T	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:105924580T>G	uc001pja.2	-	4	1476	c.836A>C	c.(835-837)CAA>CCA	p.Q279P	KBTBD3_uc001pjb.2_Missense_Mutation_p.Q279P|KBTBD3_uc009yxm.2_Missense_Mutation_p.Q200P	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	275										ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		ACCAGAACCTTGCACACACTT	0.378		NA											4	54					0	0	0	0
HSPA8	3312	broad.mit.edu	37	11	122930370	122930370	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:122930370G>A	uc001pyo.2	-	5	1009	c.931C>T	c.(931-933)CGT>TGT	p.R311C	HSPA8_uc009zbc.2_Missense_Mutation_p.R75C|HSPA8_uc001pyp.2_Missense_Mutation_p.R311C|HSPA8_uc010rzu.1_Missense_Mutation_p.R234C|HSPA8_uc009zbd.1_Missense_Mutation_p.R311C	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	311	Interaction with BAG1.				cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AGGGTGCCACGGAACAGGTCA	0.488		NA											17	39					0	0	0	0
OR8B2	26595	broad.mit.edu	37	11	124252330	124252330	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:124252330G>A	uc010sai.1	-	1	910	c.910C>T	c.(910-912)CTG>TTG	p.L304L		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ATTTTAATCAGAGCTTTCCTC	0.338		NA											16	37					0	0	0	0
STT3A	3703	broad.mit.edu	37	11	125484217	125484217	+	Splice_Site	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:125484217A>G	uc001qcd.2	+	15	1782	c.1672_splice	c.e15-2	p.A558_splice	STT3A_uc001qce.2_Splice_Site_p.A558_splice|STT3A_uc010sbg.1_Splice_Site_p.A466_splice|STT3A_uc009zbn.2_Splice_Site_p.A280_splice	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1						post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		TTGTTTTTCCAGGCAATGGCG	0.453		NA											19	222					0	0	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130318901	130318901	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr11:130318901C>T	uc010scd.1	+	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	11					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		CCCTGGCTTTCGCCGGGCGAA	0.711		NA											4	29					0	0	0	0
CLEC4E	26253	broad.mit.edu	37	12	8691819	8691819	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:8691819C>A	uc001quo.1	-	3	379	c.214G>T	c.(214-216)GGA>TGA	p.G72*		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	72	Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					ATACCTGATCCATAATTGTAG	0.383		NA											16	108					2.23e-06	3.97e-06	1	0
KLRF1	51348	broad.mit.edu	37	12	9984956	9984956	+	Missense_Mutation	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:9984956T>C	uc010sgw.1	+	2	194	c.130T>C	c.(130-132)TCT>CCT	p.S44P	KLRF1_uc009zgw.2_Missense_Mutation_p.S44P|KLRF1_uc009zgx.2_RNA|KLRF1_uc001qwm.2_RNA|KLRF1_uc009zgy.2_RNA|KLRF1_uc009zgz.2_Missense_Mutation_p.S44P|KLRF1_uc009zha.2_RNA	NM_016523	NP_057607	Q9NZS2	KLRF1_HUMAN	killer cell lectin-like receptor subfamily F,	44	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	MHC class I receptor activity|sugar binding			large_intestine(1)	1						ACTGGGAATATCTGGAACCGT	0.323		NA											9	28					0	0	0	0
ETV6	2120	broad.mit.edu	37	12	12022820	12022820	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:12022820G>T	uc001qzz.2	+	5	1200	c.926G>T	c.(925-927)CGG>CTG	p.R309L	ETV6_uc001raa.1_Missense_Mutation_p.R102L	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	309						cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				CTCTCTCATCGGGAAGACCTG	0.577		NA	T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								23	98					1.55e-16	3.11e-16	1	0
GRIN2B	2904	broad.mit.edu	37	12	14018815	14018815	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:14018815G>T	uc001rbt.2	-	2	507	c.328C>A	c.(328-330)CAG>AAG	p.Q110K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	110	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCGAGGATCTGGGCGATGGCT	0.542		NA											23	86					5.26e-13	1.04e-12	1	0
C12orf40	283461	broad.mit.edu	37	12	40076630	40076630	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:40076630C>A	uc001rmc.2	+	8	1071	c.904C>A	c.(904-906)CAA>AAA	p.Q302K	C12orf40_uc009zjv.1_RNA	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	302										ovary(6)	6						TTTTGTTAGTCAAAATATGAT	0.323		NA											18	53					2e-07	3.64e-07	1	0
LMBR1L	55716	broad.mit.edu	37	12	49495950	49495950	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:49495950G>A	uc001rth.3	-	11	1225	c.883C>T	c.(883-885)CGG>TGG	p.R295W	LMBR1L_uc001rtg.3_Missense_Mutation_p.R290W|LMBR1L_uc001rti.3_Missense_Mutation_p.R295W|LMBR1L_uc001rtj.1_Missense_Mutation_p.R139W|LMBR1L_uc009zld.1_Missense_Mutation_p.R168W	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	295	Cytoplasmic (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						CCCAGGTTCCGTTGCCAGGCT	0.597		NA											11	63					0	0	0	0
DGKA	1606	broad.mit.edu	37	12	56332340	56332340	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:56332340G>C	uc001sij.2	+	6	659	c.395G>C	c.(394-396)AGC>ACC	p.S132T	DGKA_uc009zoc.1_Missense_Mutation_p.S132T|DGKA_uc001sih.1_Intron|DGKA_uc001sii.1_5'UTR|DGKA_uc009zod.1_Missense_Mutation_p.S51T|DGKA_uc009zoe.1_Missense_Mutation_p.S132T|DGKA_uc001sik.2_Missense_Mutation_p.S132T|DGKA_uc001sil.2_Missense_Mutation_p.S132T|DGKA_uc001sim.2_Missense_Mutation_p.S132T|DGKA_uc001sin.2_Missense_Mutation_p.S132T|DGKA_uc009zof.2_5'UTR|DGKA_uc001sio.2_5'UTR	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	132	1 (Probable).|EF-hand 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	ATCCTGGACAGCTCAGTGAGT	0.507		NA											29	122					0	0	0	0
OS9	10956	broad.mit.edu	37	12	58090152	58090152	+	Missense_Mutation	SNP	T	T	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:58090152T>G	uc001spj.2	+	5	634	c.575T>G	c.(574-576)GTT>GGT	p.V192G	OS9_uc010srx.1_Intron|OS9_uc001spk.2_Missense_Mutation_p.V192G|OS9_uc001spl.2_Missense_Mutation_p.V192G|OS9_uc001spm.2_Missense_Mutation_p.V192G|OS9_uc001spn.2_Missense_Mutation_p.V192G|OS9_uc010sry.1_Intron|OS9_uc010srz.1_Missense_Mutation_p.V133G	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	192					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GAGGCCGAGGTTCGGGTGAGT	0.592		NA											12	52					0	0	0	0
EEA1	8411	broad.mit.edu	37	12	93196189	93196189	+	Missense_Mutation	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:93196189T>C	uc001tck.2	-	19	2926	c.2661A>G	c.(2659-2661)ATA>ATG	p.I887M		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	887	Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						CCAAGTCTAATATAGCGGCTT	0.289		NA											4	37					0	0	0	0
EEA1	8411	broad.mit.edu	37	12	93219970	93219970	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:93219970C>A	uc001tck.2	-	13	1761	c.1496G>T	c.(1495-1497)AGC>ATC	p.S499I		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	499	Gln/Glu/Lys-rich.|Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						TGCCGTGGTGCTTTGCTGAAG	0.328		NA											5	27					0.00116845	0.00195658	1	0
NR1H4	9971	broad.mit.edu	37	12	100955661	100955661	+	Splice_Site	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:100955661A>T	uc001tht.1	+	8	1137	c.1109_splice	c.e8-2	p.G370_splice	NR1H4_uc001thp.1_Splice_Site_p.G356_splice|NR1H4_uc001thq.1_Splice_Site_p.G360_splice|NR1H4_uc010svj.1_Splice_Site|NR1H4_uc001thr.1_Splice_Site_p.G360_splice|NR1H4_uc010svk.1_Splice_Site_p.G309_splice|NR1H4_uc001ths.1_Splice_Site_p.G366_splice	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4						bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TTTCCCCCACAGGTATCTCTG	0.318		NA											11	17					0	0	0	0
WSCD2	9671	broad.mit.edu	37	12	108589738	108589738	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:108589738C>T	uc001tms.2	+	2	873	c.129C>T	c.(127-129)CCC>CCT	p.P43P	WSCD2_uc001tmt.2_Silent_p.P43P	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	43						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						TGGGCCAGCCCGCTGTCTCGG	0.612		NA											30	135					0	0	0	0
C12orf34	84915	broad.mit.edu	37	12	110205834	110205834	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:110205834G>T	uc001tpd.1	+	3	659	c.100G>T	c.(100-102)GCC>TCC	p.A34S	MGC14436_uc010sxs.1_Intron|MGC14436_uc001tpe.2_Intron|C12orf34_uc001tpf.1_Missense_Mutation_p.A34S	NM_032829	NP_116218	Q5U5X8	CL034_HUMAN	hypothetical protein LOC84915	34										ovary(1)	1						GGTGGCCAGCGCCATGCATTC	0.652		NA											7	52					0.00307968	0.00507958	1	0
ATP2A2	488	broad.mit.edu	37	12	110784230	110784230	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:110784230G>T	uc001tqk.3	+	20	3647	c.3084G>T	c.(3082-3084)TGG>TGT	p.W1028C	ATP2A2_uc001tql.3_Intron|ATP2A2_uc010sxy.1_Missense_Mutation_p.W1001C|ATP2A2_uc001tqn.3_Missense_Mutation_p.W105C|ATP2A2_uc009zvn.2_Intron	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	1028	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						TGGTGATCTGGGTCTATAGCA	0.433		NA											6	31					0.00198382	0.00329456	1	0
RILPL1	353116	broad.mit.edu	37	12	124008157	124008157	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:124008157C>T	uc001ufe.2	-	2	581	c.345G>A	c.(343-345)GAG>GAA	p.E115E	RILPL1_uc010tas.1_Silent_p.E115E	NM_178314	NP_847884	Q5EBL4	RIPL1_HUMAN	Rab interacting lysosomal protein-like 1	115	Potential.				neuroprotection	cytosol					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000224)|Epithelial(86;0.00067)|all cancers(50;0.00836)|BRCA - Breast invasive adenocarcinoma(302;0.197)		GGTCCTGCGCCTCCCCTCGCC	0.627		NA											10	31					0	0	0	0
SFRS8	6433	broad.mit.edu	37	12	132281832	132281832	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr12:132281832C>G	uc001uja.1	+	16	2784	c.2644C>G	c.(2644-2646)CCC>GCC	p.P882A	SFRS8_uc010tbn.1_Missense_Mutation_p.P934A	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	882	Arg/Ser-rich (RS domain).				mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		gcccgcggcccccgcggcccA	0.557		NA											15	60					0	0	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748110	19748110	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr13:19748110C>A	uc009zzj.2	-	5	1295	c.1246G>T	c.(1246-1248)GGG>TGG	p.G416W		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	416					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GAGAACTCCCCCTCCTCCATG	0.602		NA											31	113					3.87e-22	7.82e-22	1	0
ATP8A2	51761	broad.mit.edu	37	13	26154054	26154054	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr13:26154054G>T	uc001uqk.2	+	22	2118	c.1976G>T	c.(1975-1977)CGG>CTG	p.R659L	ATP8A2_uc010tdi.1_Missense_Mutation_p.R619L|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.R169L	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	619	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		AGAGCTCAACGGTTGGAAGAG	0.438		NA											13	28					2.62e-11	5.05e-11	1	0
FLT3	2322	broad.mit.edu	37	13	28589793	28589793	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr13:28589793C>A	uc001urw.2	-	21	2669	c.2587G>T	c.(2587-2589)GGC>TGC	p.G863C	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.G822C	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	863	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	GTGTAGATGCCTTCAAACAGG	0.483		NA	Mis|O		AML|ALL								18	50					1.02e-10	1.94e-10	1	0
FREM2	341640	broad.mit.edu	37	13	39425083	39425083	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr13:39425083G>C	uc001uwv.2	+	10	6889	c.6580G>C	c.(6580-6582)GAG>CAG	p.E2194Q	FREM2_uc001uww.2_Missense_Mutation_p.E280Q	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2194	Extracellular (Potential).|Calx-beta 4.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGTTCCAGGTGAGACAGAAAA	0.378		NA											11	49					0	0	0	0
LHFP	10186	broad.mit.edu	37	13	39952599	39952599	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr13:39952599C>G	uc001uxf.2	-	3	961	c.450G>C	c.(448-450)CAG>CAC	p.Q150H		NM_005780	NP_005771	Q9Y693	LHFP_HUMAN	lipoma HMGIC fusion partner precursor	150						integral to membrane	DNA binding		HMGA2/LHFP(2)	soft_tissue(2)|lung(1)|breast(1)	4		Lung NSC(96;3.55e-06)|Breast(139;0.00408)|Ovarian(182;0.0107)|Prostate(109;0.0118)|Lung SC(185;0.0719)|Hepatocellular(188;0.114)		OV - Ovarian serous cystadenocarcinoma(117;6.48e-46)|Epithelial(112;8.43e-42)|all cancers(112;1.42e-36)|GBM - Glioblastoma multiforme(144;0.00187)|BRCA - Breast invasive adenocarcinoma(63;0.00886)|KIRC - Kidney renal clear cell carcinoma(186;0.048)|Kidney(163;0.0601)|LUSC - Lung squamous cell carcinoma(192;0.105)		AGCCACAAGTCTGCCGGACTT	0.493		NA	T	HMGA2	lipoma								16	51					0	0	0	0
NALCN	259232	broad.mit.edu	37	13	101747987	101747987	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr13:101747987C>G	uc001vox.1	-	28	3396	c.3207G>C	c.(3205-3207)AAG>AAC	p.K1069N		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1069	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AATTTAAGTTCTTTGACACAC	0.358		NA											9	47					0	0	0	0
TEP1	7011	broad.mit.edu	37	14	20849805	20849805	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:20849805G>A	uc001vxe.2	-	31	4505	c.4465C>T	c.(4465-4467)CTG>TTG	p.L1489L	TEP1_uc010ahk.2_Silent_p.L832L|TEP1_uc010tlf.1_Intron|TEP1_uc010tlg.1_Silent_p.L1381L|TEP1_uc010tlh.1_Intron	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1489	NACHT.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GGGAGGCACAGCCGGGCACCA	0.602		NA											17	92					0	0	0	0
OR4E2	26686	broad.mit.edu	37	14	22133982	22133982	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:22133982C>G	uc010tmd.1	+	1	686	c.686C>G	c.(685-687)TCA>TGA	p.S229*		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CGAAAACACTCAGCTGAAGGG	0.517		NA											11	64					0	0	0	0
PRKD1	5587	broad.mit.edu	37	14	30066700	30066700	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:30066700C>G	uc001wqh.2	-	16	2612	c.2431G>C	c.(2431-2433)GAA>CAA	p.E811Q		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	811	Protein kinase.				cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		ATATTACCTTCATGAGATATT	0.274		NA											12	66					0	0	0	0
NPAS3	64067	broad.mit.edu	37	14	33684490	33684490	+	Silent	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:33684490T>A	uc001wru.2	+	3	307	c.243T>A	c.(241-243)CCT>CCA	p.P81P	NPAS3_uc001wrs.2_Silent_p.P51P|NPAS3_uc001wrt.2_Silent_p.P51P|NPAS3_uc001wrv.2_Silent_p.P51P|NPAS3_uc001wrw.2_5'UTR	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	81	Helix-loop-helix motif.			PLP -> LS (in Ref. 4; CAB45154).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		TGCCTCTTCCTGCAGCCATTA	0.493		NA											17	103					0	0	0	0
MIPOL1	145282	broad.mit.edu	37	14	37754564	37754564	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:37754564G>T	uc001wuc.2	+	8	1038	c.535G>T	c.(535-537)GAA>TAA	p.E179*	MIPOL1_uc010amr.2_Intron|MIPOL1_uc001wub.3_Nonsense_Mutation_p.E148*|MIPOL1_uc001wud.2_Nonsense_Mutation_p.E179*|MIPOL1_uc010ams.2_Nonsense_Mutation_p.E179*|MIPOL1_uc001wue.2_Nonsense_Mutation_p.E148*|MIPOL1_uc010amt.2_5'UTR	NM_138731	NP_620059	Q8TD10	MIPO1_HUMAN	mirror-image polydactyly 1	179	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(36;0.119)|Esophageal squamous(585;0.164)|Hepatocellular(127;0.213)		Lung(238;6.03e-07)|LUAD - Lung adenocarcinoma(48;2.48e-05)|Epithelial(34;0.047)|all cancers(34;0.0953)|LUSC - Lung squamous cell carcinoma(13;0.0975)|BRCA - Breast invasive adenocarcinoma(188;0.196)	GBM - Glioblastoma multiforme(112;0.0358)		GGAACGTGATGAAGCTGTTAT	0.378		NA											14	79					1.03e-11	1.99e-11	1	0
SSTR1	6751	broad.mit.edu	37	14	38679680	38679680	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:38679680C>A	uc001wul.1	+	3	1703	c.1086C>A	c.(1084-1086)GCC>GCA	p.A362A	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	362	Cytoplasmic (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	AGAGCCGTGCCTACAGTGTGG	0.612		NA											18	75					3.52e-12	6.88e-12	1	0
LRFN5	145581	broad.mit.edu	37	14	42356976	42356976	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:42356976G>T	uc001wvm.2	+	3	2346	c.1148G>T	c.(1147-1149)AGT>ATT	p.S383I	LRFN5_uc010ana.2_Missense_Mutation_p.S383I	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	383	Extracellular (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TTACTAAATAGTACAAACCAT	0.393		NA								HNSCC(30;0.082)			10	56					1.59e-06	2.84e-06	1	0
FSCB	84075	broad.mit.edu	37	14	44975712	44975712	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:44975712C>A	uc001wvn.2	-	1	788	c.479G>T	c.(478-480)AGT>ATT	p.S160I		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	160						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TTCTGATTCACTAAAGTATGT	0.418		NA											29	157					1.14e-10	2.16e-10	1	0
FSCB	84075	broad.mit.edu	37	14	44975773	44975773	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:44975773A>T	uc001wvn.2	-	1	727	c.418T>A	c.(418-420)TGG>AGG	p.W140R		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	140						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		ATCATGGTCCAGTATCCTGTA	0.423		NA											39	164					0	0	0	0
FKBP3	2287	broad.mit.edu	37	14	45590112	45590112	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:45590112C>G	uc010tqf.1	-	5	573	c.500G>C	c.(499-501)GGA>GCA	p.G167A		NM_002013	NP_002004	Q00688	FKBP3_HUMAN	FK506 binding protein 3, 25kDa	167	PPIase FKBP-type.				protein folding	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|receptor activity				0						TTTGCCTACTCCGACCTTAAA	0.333		NA											3	61					0	0	0	0
FRMD6	122786	broad.mit.edu	37	14	52194577	52194577	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:52194577C>G	uc001wzd.2	+	14	1984	c.1699C>G	c.(1699-1701)CAG>GAG	p.Q567E	FRMD6_uc001wzb.2_Missense_Mutation_p.Q559E|FRMD6_uc001wzc.2_Missense_Mutation_p.Q559E|FRMD6_uc001wze.2_Missense_Mutation_p.Q490E|FRMD6_uc001wzf.2_Missense_Mutation_p.Q260E|FRMD6_uc001wzg.2_Missense_Mutation_p.Q209E	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	567						cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					GGACACTGCTCAGAGTTACAC	0.502		NA											11	45					0	0	0	0
ABCD4	5826	broad.mit.edu	37	14	74761852	74761852	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:74761852T>A	uc001xpr.2	-	7	870	c.718A>T	c.(718-720)AGA>TGA	p.R240*	ABCD4_uc001xps.2_Nonsense_Mutation_p.R81*|ABCD4_uc001xpt.2_Nonsense_Mutation_p.R81*|ABCD4_uc010tur.1_Intron|ABCD4_uc001xpu.2_Silent_p.T8T|ABCD4_uc001xpv.2_RNA	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	240	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		CAGACTCACCTGTAGAAAGCA	0.562		NA											17	54					0	0	0	0
TMEM90A	646658	broad.mit.edu	37	14	74874270	74874270	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:74874270C>T	uc001xpx.2	-	4	933	c.685G>A	c.(685-687)GCA>ACA	p.A229T		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	229					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		ATGTAAGCTGCCAGAGCCACC	0.652		NA											17	68					0	0	0	0
KCNK10	54207	broad.mit.edu	37	14	88707107	88707107	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:88707107T>A	uc001xwo.2	-	3	902	c.445A>T	c.(445-447)AGC>TGC	p.S149C	KCNK10_uc001xwm.2_Missense_Mutation_p.S154C|KCNK10_uc001xwn.2_Missense_Mutation_p.S154C	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	149					signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CAGTGGCTGCTGTTGTTGGAA	0.458		NA											27	105					0	0	0	0
SPATA7	55812	broad.mit.edu	37	14	88904701	88904701	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:88904701G>C	uc001xwq.2	+	12	1886	c.1735G>C	c.(1735-1737)GAC>CAC	p.D579H	SPATA7_uc001xwr.2_Missense_Mutation_p.D547H|SPATA7_uc001xws.2_Missense_Mutation_p.D515H|SPATA7_uc001xwt.2_Missense_Mutation_p.D473H|SPATA7_uc001xwu.2_Missense_Mutation_p.D94H	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	579					response to stimulus|visual perception					ovary(1)	1						CAATAATCATGACATGGAGTT	0.383		NA											7	28					0	0	0	0
TTC8	123016	broad.mit.edu	37	14	89305909	89305909	+	Silent	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:89305909A>G	uc010ath.2	+	2	362	c.228A>G	c.(226-228)CAA>CAG	p.Q76Q	TTC8_uc010atg.1_RNA|TTC8_uc001xxl.2_5'UTR|TTC8_uc010ati.2_5'UTR|TTC8_uc001xxm.2_Silent_p.Q76Q|TTC8_uc010atj.2_Intron|TTC8_uc001xxi.2_Silent_p.Q86Q|TTC8_uc001xxj.2_Silent_p.Q76Q|TTC8_uc001xxk.2_Silent_p.Q76Q	NM_198309	NP_938051	Q8TAM2	TTC8_HUMAN	tetratricopeptide repeat domain 8 isoform B	86					cilium assembly|establishment of anatomical structure orientation|sensory processing	BBSome|centrosome|cilium membrane|microtubule basal body	protein binding				0						CTATAGCTCAAGTTCCACGTA	0.328		NA							Bardet-Biedl_syndrome				6	45					0	0	0	0
CCDC88C	440193	broad.mit.edu	37	14	91780146	91780146	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:91780146G>A	uc010aty.2	-	15	2113	c.2014C>T	c.(2014-2016)CAG>TAG	p.Q672*		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	672	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TTCTCCAGCTGCAGGCCCTGG	0.627		NA											6	15					0	0	0	0
PAPOLA	10914	broad.mit.edu	37	14	97022574	97022574	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:97022574C>T	uc001yfq.2	+	19	2038	c.1828C>T	c.(1828-1830)CCT>TCT	p.P610S	PAPOLA_uc001yfr.2_Missense_Mutation_p.P609S|PAPOLA_uc010twv.1_Missense_Mutation_p.P610S|PAPOLA_uc010avp.2_Missense_Mutation_p.P360S	NM_032632	NP_116021	P51003	PAPOA_HUMAN	poly(A) polymerase alpha	610	Ser/Thr-rich.				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|RNA binding				0		all_cancers(154;0.0555)|all_epithelial(191;0.149)|Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.213)		ACCACCAAAGCCTACGGTCTC	0.418		NA											22	86					0	0	0	0
DIO3	1735	broad.mit.edu	37	14	102028010	102028010	+	Silent	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:102028010C>G	uc010txq.1	+	1	323	c.99C>G	c.(97-99)CTC>CTG	p.L33L	DIO3OS_uc001ykd.1_5'Flank|uc001yke.2_5'Flank|uc001ykf.2_5'Flank|uc001ykg.2_5'Flank|uc001ykh.3_5'Flank|MIR1247_hsa-mir-1247|MI0006382_5'Flank	NM_001362	NP_001353	P55073	IOD3_HUMAN	deiodinase, iodothyronine, type III	33	Helical; Signal-anchor for type II membrane protein; (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	endosome membrane|integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|thyroxine 5-deiodinase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(303;0.185)				CCTTCATGCTCTGGCTTCTCG	0.657		NA											10	77					0	0	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890179	23890179	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr15:23890179G>A	uc001ywj.3	-	1	997	c.902C>T	c.(901-903)GCC>GTC	p.A301V		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GTCATGAAAGGCTAGCGTGTG	0.627		NA											18	46					0	0	0	0
TTBK2	146057	broad.mit.edu	37	15	43067454	43067454	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr15:43067454G>A	uc001zqo.2	-	13	2316	c.1877C>T	c.(1876-1878)CCT>CTT	p.P626L	TTBK2_uc010bcy.2_Missense_Mutation_p.P557L	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	626					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		AGCAGCAGTAGGAGGACCCTC	0.488		NA											63	67					0	0	0	0
USP8	9101	broad.mit.edu	37	15	50786338	50786338	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr15:50786338G>A	uc001zym.3	+	17	3019	c.2519G>A	c.(2518-2520)GGA>GAA	p.G840E	USP8_uc001zyl.3_Missense_Mutation_p.G840E|USP8_uc001zyn.3_Missense_Mutation_p.G840E|USP8_uc010ufh.1_Missense_Mutation_p.G734E|uc001zyo.1_RNA|USP8_uc001zyp.3_Missense_Mutation_p.G7E	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	840					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		CTGTGGACAGGACAGTATAGA	0.383		NA											19	87					0	0	0	0
NOX5	79400	broad.mit.edu	37	15	69335123	69335123	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr15:69335123G>C	uc002ars.1	+	10	1645	c.1625G>C	c.(1624-1626)AGA>ACA	p.R542T	NOX5_uc002arp.1_Missense_Mutation_p.R524T|NOX5_uc002arq.1_Missense_Mutation_p.R496T|NOX5_uc010bid.1_Missense_Mutation_p.R507T|NOX5_uc002arr.1_Missense_Mutation_p.R514T|NOX5_uc010bie.1_Missense_Mutation_p.R342T|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	542	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GTGACAATGAGAAAGAGTCAA	0.552		NA											19	17					0	0	0	0
LINGO1	84894	broad.mit.edu	37	15	77906424	77906424	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr15:77906424C>A	uc002bct.1	-	2	1877	c.1825G>T	c.(1825-1827)GCC>TCC	p.A609S	LINGO1_uc002bcu.1_Missense_Mutation_p.A603S	NM_032808	NP_116197	Q96FE5	LIGO1_HUMAN	leucine-rich repeat neuronal 6A	609	Cytoplasmic (Potential).				negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)|lung(1)	2						GGCGCGTCGGCGGAGCTGATG	0.493		NA											10	15					2.18e-05	3.78e-05	1	0
ADAMTS17	170691	broad.mit.edu	37	15	100672232	100672232	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr15:100672232C>G	uc002bvv.1	-	12	1780	c.1701G>C	c.(1699-1701)CAG>CAC	p.Q567H	ADAMTS17_uc002bvx.1_Missense_Mutation_p.Q324H	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	567	TSP type-1 1.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CACATTTCCTCTGCCTGAAGC	0.627		NA									OREG0023513	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	79					0	0	0	0
RPL3L	6123	broad.mit.edu	37	16	1996719	1996719	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:1996719G>C	uc002cnh.2	-	7	905	c.858C>G	c.(856-858)CGC>CGG	p.R286R		NM_005061	NP_005052	Q92901	RL3L_HUMAN	ribosomal protein L3-like	286					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome				0						CCCTGCCGATGCGGAAGATCT	0.632		NA											8	28					0	0	0	0
CLEC16A	23274	broad.mit.edu	37	16	11071128	11071128	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:11071128G>C	uc002dao.2	+	8	1005	c.775G>C	c.(775-777)GAC>CAC	p.D259H	CLEC16A_uc002dan.3_Missense_Mutation_p.D257H	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	259										ovary(1)|central_nervous_system(1)	2						AGAGCACCTAGACCACCTGCA	0.537		NA											11	69					0	0	0	0
ITGAL	3683	broad.mit.edu	37	16	30518132	30518132	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:30518132G>C	uc002dyi.3	+	21	2639	c.2463G>C	c.(2461-2463)CTG>CTC	p.L821L	ITGAL_uc002dyj.3_Silent_p.L737L|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	821	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	AGCTGGACCTGCACTTCCCCC	0.602		NA											33	180					0	0	0	0
ZNF668	79759	broad.mit.edu	37	16	31073227	31073227	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:31073227C>T	uc010caf.2	-	3	1379	c.1022G>A	c.(1021-1023)TGT>TAT	p.C341Y	ZNF668_uc002eao.2_Missense_Mutation_p.C341Y	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	341	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						CGTCTTGTCACATTGCAGGCA	0.677		NA											13	59					0	0	0	0
C16orf58	64755	broad.mit.edu	37	16	31502206	31502206	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:31502206C>T	uc002eci.1	-	13	1369	c.1357G>A	c.(1357-1359)GGT>AGT	p.G453S	C16orf58_uc002ecg.2_5'Flank|C16orf58_uc002ech.1_Missense_Mutation_p.D191N	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	453				D -> G (in Ref. 1; BAB14730).		integral to membrane				ovary(1)|breast(1)	2						CTCCACTCATCCACCTCTAGC	0.612		NA											20	71					0	0	0	0
CSNK2A2	1459	broad.mit.edu	37	16	58198043	58198043	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:58198043C>A	uc002enc.2	-	11	1127	c.985G>T	c.(985-987)GTG>TTG	p.V329L		NM_001896	NP_001887	P19784	CSK22_HUMAN	casein kinase 2, alpha prime polypeptide	329					axon guidance|Wnt receptor signaling pathway	cytosol|nucleus	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						TGCTCCTTCACCACAGGGTCT	0.547		NA											13	58					1.62e-10	3.06e-10	1	0
CALB2	794	broad.mit.edu	37	16	71406097	71406097	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:71406097C>T	uc002faa.3	+	2	206	c.136C>T	c.(136-138)CAA>TAA	p.Q46*	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_Nonsense_Mutation_p.Q46*	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	46	EF-hand 1.						calcium ion binding				0		Ovarian(137;0.125)				AAACTTTTTCCAAGAGCTGGA	0.458		NA											13	58					0	0	0	0
USP10	9100	broad.mit.edu	37	16	84808830	84808830	+	Silent	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr16:84808830A>T	uc002fii.2	+	13	2350	c.2208A>T	c.(2206-2208)GCA>GCT	p.A736A	USP10_uc010voe.1_Silent_p.A740A|USP10_uc010vof.1_Silent_p.A298A|USP10_uc002fij.2_Silent_p.A262A	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	736					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						GGCTCTTTGCAGGTGAGTAAA	0.403		NA											19	58					0	0	0	0
USP6	9098	broad.mit.edu	37	17	5036229	5036229	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:5036229A>G	uc002gau.1	+	13	2450	c.220A>G	c.(220-222)ACG>GCG	p.T74A	USP6_uc002gav.1_Missense_Mutation_p.T74A|USP6_uc010ckz.1_5'UTR|USP6_uc002gaw.2_Missense_Mutation_p.T135A|uc002gay.1_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	74					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						GATGACACGAACGAGCAAGTG	0.532		NA	T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								3	153					0	0	0	0
BCL6B	255877	broad.mit.edu	37	17	6930932	6930932	+	Silent	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:6930932G>T	uc002geg.2	+	9	1491	c.1434G>T	c.(1432-1434)GGG>GGT	p.G478G	BCL6B_uc010clt.1_Silent_p.G479G	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	478						nucleus	zinc ion binding			skin(1)	1						TTCTCGGGGGGCCCTAGCTGA	0.622		NA											11	48					1.62e-10	3.06e-10	1	0
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:7578406C>T	uc002gim.2	-	5	718	c.524G>A	c.(523-525)CGC>CAC	p.R175H	TP53_uc002gig.1_Missense_Mutation_p.R175H|TP53_uc002gih.2_Missense_Mutation_p.R175H|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R43H|TP53_uc010cng.1_Missense_Mutation_p.R43H|TP53_uc002gii.1_Missense_Mutation_p.R43H|TP53_uc010cnh.1_Missense_Mutation_p.R175H|TP53_uc010cni.1_Missense_Mutation_p.R175H|TP53_uc002gij.2_Missense_Mutation_p.R175H|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R82H|TP53_uc002gio.2_Missense_Mutation_p.R43H|TP53_uc010vug.1_Missense_Mutation_p.R136H	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	175	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in a sporadic cancer; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in sporadic cancers; somatic mutation).|R -> S (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R175H(729)|p.R175L(19)|p.R175C(12)|p.R175G(11)|p.0?(7)|p.R175P(5)|p.R175S(5)|p.R43H(5)|p.R82H(5)|p.R175R(4)|p.R174fs*24(3)|p.R175_E180delRCPHHE(3)|p.R175fs*5(2)|p.V173fs*59(2)|p.R174fs*1(2)|p.V157_C176del20(1)|p.K164_P219del(1)|p.V173fs*69(1)|p.E171fs*61(1)|p.V173fs*23(1)|p.R174_H178>S(1)|p.V172_E180delVVRRCPHHE(1)|p.R174_H179delRRCPHH(1)|p.E171fs*1(1)|p.R175_H178>X(1)|p.R175fs*6(1)|p.R42fs*24(1)|p.R174_C176delRRC(1)|p.H168fs*69(1)|p.R175fs*72(1)|p.R174fs*70(1)|p.E171_H179delEVVRRCPHH(1)|p.R81fs*24(1)|p.R174_E180>K(1)|p.R174fs*3(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GTGGGGGCAGCGCCTCACAAC	0.652	R175H(KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R175H(HCC1395_BREAST)|R175H(KLE_ENDOMETRIUM)|R175H(NCIH196_LUNG)|R175H(AU565_BREAST)|R175H(TYKNU_OVARY)|R175H(DETROIT562_UPPER_AERODIGESTIVE_TRACT)|R175H(SKUT1_SOFT_TISSUE)|R175H(CAL33_UPPER_AERODIGESTIVE_TRACT)|R175H(LS123_LARGE_INTESTINE)|R175H(SKBR3_BREAST)|R175H(RKN_OVARY)|R175H(HUCCT1_BILIARY_TRACT)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			13	36					0	0	0	0
NTN1	9423	broad.mit.edu	37	17	9143248	9143248	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:9143248A>G	uc002glw.3	+	7	1885	c.1778A>G	c.(1777-1779)CAG>CGG	p.Q593R		NM_004822	NP_004813	O95631	NET1_HUMAN	netrin 1 precursor	593	NTR.				apoptosis|axon guidance		protein binding				0						CGCAAGTTCCAGCAGCGTGAG	0.607		NA											3	13					0	0	0	0
MYH13	8735	broad.mit.edu	37	17	10213055	10213055	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:10213055C>A	uc002gmk.1	-	34	4839	c.4749G>T	c.(4747-4749)AAG>AAT	p.K1583N		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1583	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TTTCTTCATCCTTCTCAATGA	0.562		NA											3	7					6.4e-05	0.00011009	1	0
NOS2	4843	broad.mit.edu	37	17	26107912	26107912	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:26107912C>T	uc002gzu.2	-	9	1149	c.885G>A	c.(883-885)TGG>TGA	p.W295*	NOS2_uc010crh.1_Nonsense_Mutation_p.W295*|NOS2_uc010wab.1_Nonsense_Mutation_p.W295*	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	295					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	ACTTGGGCTTCCAGCCCAGGT	0.627		NA											11	39					0	0	0	0
LRRC46	90506	broad.mit.edu	37	17	45914142	45914142	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:45914142C>A	uc002ima.2	+	8	878	c.622C>A	c.(622-624)CTG>ATG	p.L208M	LRRC46_uc002imb.2_Missense_Mutation_p.L161M	NM_033413	NP_219481	Q96FV0	LRC46_HUMAN	leucine rich repeat containing 46	208	Potential.									ovary(1)	1						GGAGCAGGAGCTGAGCAGGCA	0.687		NA											5	41					0.00116845	0.00195658	1	0
NFE2L1	4779	broad.mit.edu	37	17	46135825	46135825	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:46135825G>T	uc002imz.3	+	6	1792	c.1141G>T	c.(1141-1143)GAG>TAG	p.E381*	NFE2L1_uc002ina.3_Nonsense_Mutation_p.E351*|NFE2L1_uc002inb.3_Nonsense_Mutation_p.E351*|NFE2L1_uc010wle.1_Nonsense_Mutation_p.E193*|NFE2L1_uc010wlf.1_Nonsense_Mutation_p.E225*	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	381					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						CTTCAGCCCCGAGGTGGAAAG	0.607		NA											32	85					9.78e-22	1.97e-21	1	0
TTLL6	284076	broad.mit.edu	37	17	46867429	46867429	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:46867429C>T	uc010wlo.1	-	11	1299	c.1264G>A	c.(1264-1266)GAT>AAT	p.D422N	TTLL6_uc002iob.2_Missense_Mutation_p.D115N|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Missense_Mutation_p.D175N|TTLL6_uc002iod.2_Missense_Mutation_p.D269N	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	374	TTL.					cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						ACCTCTTTATCCAACCGAGAG	0.512		NA											19	68					0	0	0	0
C17orf47	284083	broad.mit.edu	37	17	56620420	56620420	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:56620420G>C	uc002iwq.1	-	1	1264	c.1128C>G	c.(1126-1128)ACC>ACG	p.T376T	SEPT4_uc010wnx.1_5'Flank|SEPT4_uc010wny.1_5'Flank	NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	376										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGGGTTTTTGGGTTTGCTGTT	0.493		NA											13	61					0	0	0	0
ERN1	2081	broad.mit.edu	37	17	62122729	62122729	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:62122729G>A	uc002jdz.2	-	20	2756	c.2643C>T	c.(2641-2643)CCC>CCT	p.P881P		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	881	Cytoplasmic (Potential).|KEN.				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						CTGTCTGGAGGGGGACAGTGA	0.562		NA											6	37					0	0	0	0
CCDC46	201134	broad.mit.edu	37	17	64059084	64059084	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:64059084T>A	uc002jfl.2	-	11	1290	c.1071A>T	c.(1069-1071)AAA>AAT	p.K357N	CCDC46_uc010deo.2_Missense_Mutation_p.K99N|CCDC46_uc002jfm.2_Missense_Mutation_p.K357N|CCDC46_uc010dep.2_Missense_Mutation_p.K315N	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	357	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			AGCTTACCTTTTTTTCCCAGT	0.299		NA											7	35					0	0	0	0
GPR142	350383	broad.mit.edu	37	17	72368159	72368159	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:72368159C>T	uc010wqy.1	+	4	809	c.809C>T	c.(808-810)TCG>TTG	p.S270L	GPR142_uc010wqx.1_Missense_Mutation_p.S182L	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	270	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CGGGCCGCCTCGTCCCCAGGC	0.657		NA											5	24					0	0	0	0
GPRC5C	55890	broad.mit.edu	37	17	72443133	72443133	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:72443133C>G	uc002jks.2	+	3	1331	c.1292C>G	c.(1291-1293)TCT>TGT	p.S431C	GPRC5C_uc002jkp.2_Missense_Mutation_p.S476C|GPRC5C_uc002jkq.2_3'UTR|GPRC5C_uc002jkr.2_Missense_Mutation_p.S443C|GPRC5C_uc002jkt.2_Missense_Mutation_p.S431C|GPRC5C_uc002jku.2_Missense_Mutation_p.S186C	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	431	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						GGCAAGAACTCTCAGGTCTTT	0.652		NA											16	91					0	0	0	0
CASKIN2	57513	broad.mit.edu	37	17	73498200	73498200	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:73498200C>A	uc002joc.2	-	18	3505	c.2955G>T	c.(2953-2955)ACG>ACT	p.T985T	CASKIN2_uc010wsc.1_Silent_p.T903T	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	985	Pro-rich.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGTCTGATTCCGTGAGGTTGA	0.667		NA											17	71					4.97e-08	9.2e-08	1	0
EPB41L3	23136	broad.mit.edu	37	18	5397146	5397146	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr18:5397146C>G	uc002kmt.1	-	18	2838	c.2752G>C	c.(2752-2754)GAG>CAG	p.E918Q	EPB41L3_uc010wzh.1_Missense_Mutation_p.E749Q|EPB41L3_uc002kmu.1_Missense_Mutation_p.E696Q|EPB41L3_uc010dkq.1_Missense_Mutation_p.E587Q|EPB41L3_uc002kms.1_Missense_Mutation_p.E153Q|EPB41L3_uc010wze.1_Missense_Mutation_p.E223Q|EPB41L3_uc010wzf.1_Missense_Mutation_p.E215Q|EPB41L3_uc010wzg.1_Missense_Mutation_p.E190Q|EPB41L3_uc010dkr.2_Missense_Mutation_p.E310Q	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	918	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GCGGCTGTCTCTTCCTGTTCC	0.522		NA											6	136					0	0	0	0
C18orf45	85019	broad.mit.edu	37	18	20979546	20979546	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr18:20979546C>G	uc002kuf.2	-	4	372	c.263G>C	c.(262-264)AGA>ACA	p.R88T	C18orf45_uc010xaq.1_Intron|C18orf45_uc010xar.1_RNA|C18orf45_uc002kug.2_RNA|C18orf45_uc002kuh.2_RNA	NM_032933	NP_116322	Q24JQ0	CR045_HUMAN	hypothetical protein LOC85019	88						integral to membrane					0	all_cancers(21;0.000238)|all_epithelial(16;5.29e-06)|Lung NSC(20;0.00925)|Colorectal(14;0.0202)|all_lung(20;0.0255)|Ovarian(20;0.127)					GGACAATGCTCTGGACCCAGC	0.443		NA											8	69					0	0	0	0
ZNF521	25925	broad.mit.edu	37	18	22806305	22806305	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr18:22806305G>C	uc002kvk.2	-	4	1824	c.1577C>G	c.(1576-1578)TCT>TGT	p.S526C	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.S526C|ZNF521_uc002kvl.2_Missense_Mutation_p.S306C	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	526	C2H2-type 12.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TTCCAGGGAAGAGTCAGTGAG	0.468		NA	T	PAX5	ALL								7	70					0	0	0	0
MOCOS	55034	broad.mit.edu	37	18	33828964	33828964	+	Splice_Site	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr18:33828964G>T	uc002kzq.3	+	10	2062	c.2039_splice	c.e10+1	p.R680_splice		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase						Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	GTGCTGACAGGTGAGACTCTG	0.413		NA											7	21					8.13e-05	0.000138603	1	0
FAM69C	125704	broad.mit.edu	37	18	72103843	72103843	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr18:72103843G>C	uc002llk.2	-	4	1162	c.1153C>G	c.(1153-1155)CCT>GCT	p.P385A		NM_001044369	NP_001037834	Q0P6D2	FA69C_HUMAN	hypothetical protein LOC125704	385	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0						GGGACCCCAGGGTCTGCACAT	0.587		NA											6	21					0	0	0	0
POLRMT	5442	broad.mit.edu	37	19	619032	619032	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:619032C>T	uc002lpf.1	-	15	3288	c.3232G>A	c.(3232-3234)GTC>ATC	p.V1078I		NM_005035	NP_005026	O00411	RPOM_HUMAN	mitochondrial DNA-directed RNA polymerase	1078	Mediates interaction with TEFM.				transcription initiation from mitochondrial promoter	mitochondrial nucleoid	DNA binding|DNA-directed RNA polymerase activity|protein binding			ovary(1)|pancreas(1)	2		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCTGGATGACGGGGACGCCC	0.632		NA											4	19					0	0	0	0
ABCA7	10347	broad.mit.edu	37	19	1043352	1043352	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:1043352G>C	uc002lqw.3	+	9	1041	c.810G>C	c.(808-810)CTG>CTC	p.L270L	ABCA7_uc010dsb.1_Silent_p.L132L	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	270	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity	p.L270L(1)		pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCGGAGCTGATTGGAGCCC	0.627		NA											12	79					0	0	0	0
FZR1	51343	broad.mit.edu	37	19	3527705	3527705	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:3527705G>A	uc010dtk.2	+	6	581	c.547G>A	c.(547-549)GAG>AAG	p.E183K	FZR1_uc002lxt.2_Missense_Mutation_p.E183K|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	183	WD 1.				activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		GGACGCGCCCGAGCTGCAGGA	0.632		NA											6	42					0	0	0	0
SEMA6B	10501	broad.mit.edu	37	19	4548323	4548323	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:4548323G>C	uc010duc.1	-	12	1444	c.1406C>G	c.(1405-1407)TCT>TGT	p.S469C	SEMA6B_uc010dud.2_Missense_Mutation_p.S469C|SEMA6B_uc010xih.1_Missense_Mutation_p.S469C	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	469	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		ACTGAGCCCAGACGTCCCTGA	0.647		NA											8	61					0	0	0	0
FEM1A	55527	broad.mit.edu	37	19	4792971	4792971	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:4792971G>A	uc002mbf.2	+	1	1244	c.1105G>A	c.(1105-1107)GAG>AAG	p.E369K	uc002mbg.1_RNA	NM_018708	NP_061178	Q9BSK4	FEM1A_HUMAN	fem-1 homolog a	369					regulation of ubiquitin-protein ligase activity	cytoplasm	binding|ubiquitin-protein ligase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		CGACCCGGATGAGATGCGCAT	0.632		NA											16	61					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9056573	9056573	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:9056573G>A	uc002mkp.2	-	3	31077	c.30873C>T	c.(30871-30873)ACC>ACT	p.T10291T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10293	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAACTCCAGTGGTGGCAAATG	0.517		NA											10	92					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9068476	9068476	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:9068476C>T	uc002mkp.2	-	3	19174	c.18970G>A	c.(18970-18972)GAC>AAC	p.D6324N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6326	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTATATGGGTCTGAGTCAGGT	0.443		NA											9	79					0	0	0	0
ZNF136	7695	broad.mit.edu	37	19	12297490	12297490	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:12297490G>A	uc002mti.2	+	4	397	c.297G>A	c.(295-297)GTG>GTA	p.V99V	ZNF136_uc010xmh.1_Silent_p.V33V	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	99					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						TCCCTGGAGTGAAACTCTGTG	0.398		NA											5	33					0	0	0	0
LPHN1	22859	broad.mit.edu	37	19	14262129	14262129	+	Silent	SNP	A	A	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:14262129A>C	uc010xnn.1	-	24	4277	c.3981T>G	c.(3979-3981)GGT>GGG	p.G1327G	LPHN1_uc010xno.1_Silent_p.G1322G|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1327	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						CCCGGTCAGCACCCCCGGGCC	0.716		NA											6	8					0	0	0	0
ZNF85	7639	broad.mit.edu	37	19	21132951	21132951	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:21132951G>A	uc002npg.3	+	4	1758	c.1631G>A	c.(1630-1632)GGC>GAC	p.G544D	ZNF85_uc010ecn.2_Missense_Mutation_p.G479D|ZNF85_uc010eco.2_Missense_Mutation_p.G492D|ZNF85_uc002npi.2_Missense_Mutation_p.G485D	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	544	C2H2-type 15.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						GAAGAATGTGGCAAAGCCTTT	0.348		NA											5	41					0	0	0	0
ZNF98	148198	broad.mit.edu	37	19	22575547	22575547	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:22575547G>A	uc002nqt.2	-	4	612	c.490C>T	c.(490-492)CAT>TAT	p.H164Y		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	164					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				GAAAATTTATGAAAGACTTTC	0.313		NA											3	7					0	0	0	0
ZNF536	9745	broad.mit.edu	37	19	31039948	31039948	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:31039948C>G	uc002nsu.1	+	4	3560	c.3422C>G	c.(3421-3423)TCT>TGT	p.S1141C	ZNF536_uc010edd.1_Missense_Mutation_p.S1141C	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1141					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AAGGCCCACTCTGAAGAGGAT	0.542		NA											6	38					0	0	0	0
CHST8	64377	broad.mit.edu	37	19	34263714	34263714	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:34263714G>A	uc002nus.3	+	5	1526	c.1021G>A	c.(1021-1023)GAC>AAC	p.D341N	CHST8_uc002nut.3_Missense_Mutation_p.D341N|CHST8_uc002nuu.2_Missense_Mutation_p.D341N	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	341	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					CTGCCTCATCGACTACGATTT	0.607		NA											13	34					0	0	0	0
ZNF565	147929	broad.mit.edu	37	19	36673999	36673999	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:36673999C>T	uc002odn.2	-	5	977	c.869G>A	c.(868-870)CGT>CAT	p.R290H	ZNF565_uc010ees.2_Missense_Mutation_p.R225H|ZNF565_uc002odo.2_Missense_Mutation_p.R290H	NM_152477	NP_689690	Q8N9K5	ZN565_HUMAN	zinc finger protein 565	290	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.206)			TTGGGAGCCACGAATGAAAGC	0.502		NA											14	81					0	0	0	0
ZNF345	25850	broad.mit.edu	37	19	37367985	37367985	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:37367985A>G	uc002oex.2	+	3	631	c.253A>G	c.(253-255)ACT>GCT	p.T85A	ZNF345_uc002oey.3_Missense_Mutation_p.T85A|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	85					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCGAATTCATACTGGTGAGAA	0.403		NA											6	38					0	0	0	0
ZNF45	7596	broad.mit.edu	37	19	44417888	44417888	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:44417888C>A	uc002oxu.1	-	4	1799	c.1700G>T	c.(1699-1701)CGG>CTG	p.R567L	ZNF45_uc002oxw.1_Missense_Mutation_p.R567L|ZNF45_uc002oxv.1_Missense_Mutation_p.R567L	NM_003425	NP_003416	Q02386	ZNF45_HUMAN	zinc finger protein 45	567	C2H2-type 15.				multicellular organismal development	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						ATTGGAGGCCCGACAGAAGCC	0.517		NA											17	85					3.41e-10	6.43e-10	1	0
MYADM	91663	broad.mit.edu	37	19	54377171	54377171	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:54377171C>A	uc002qcl.2	+	3	536	c.388C>A	c.(388-390)CAC>AAC	p.H130N	MYADM_uc002qcm.2_Missense_Mutation_p.H130N|MYADM_uc002qcn.2_Missense_Mutation_p.H130N|MYADM_uc002qco.2_Missense_Mutation_p.H130N|MYADM_uc002qcp.2_Missense_Mutation_p.H130N	NM_001020820	NP_001018656	Q96S97	MYADM_HUMAN	myeloid-associated differentiation marker	130	MARVEL 1.					integral to membrane				ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.0488)		GTTCCTGTCCCACGGCCGTTC	0.662		NA											20	98					7.45e-12	1.46e-11	1	0
LILRB5	10990	broad.mit.edu	37	19	54756392	54756392	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:54756392C>T	uc002qex.2	-	10	1603	c.1492G>A	c.(1492-1494)GGG>AGG	p.G498R	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.G490R|LILRB5_uc002qey.2_Missense_Mutation_p.G499R|LILRB5_uc002qez.2_Missense_Mutation_p.G399R|LILRB5_uc002qfa.1_3'UTR	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	498	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCCGCAGCCCCTGCAGGACGG	0.607		NA											8	76					0	0	0	0
LILRA1	11024	broad.mit.edu	37	19	55106219	55106219	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:55106219G>A	uc002qgh.1	+	4	342	c.160G>A	c.(160-162)GAG>AAG	p.E54K	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.E54K	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	54	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GGGGATCCTGGAGACCCAGGA	0.577		NA											19	91					0	0	0	0
LILRB1	10859	broad.mit.edu	37	19	55148286	55148286	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:55148286C>T	uc002qgj.2	+	16	2250	c.1910C>T	c.(1909-1911)TCT>TTT	p.S637F	LILRB1_uc002qgl.2_Missense_Mutation_p.S638F|LILRB1_uc002qgk.2_Missense_Mutation_p.S638F|LILRB1_uc002qgm.2_Missense_Mutation_p.S639F|LILRB1_uc010erq.2_Missense_Mutation_p.S621F|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	637	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GAAGGGCCCTCTCCAGCTGTG	0.642		NA								HNSCC(37;0.09)			17	47					0	0	0	0
PXDN	7837	broad.mit.edu	37	2	1664703	1664703	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:1664703G>C	uc002qxa.2	-	14	1851	c.1787C>G	c.(1786-1788)GCC>GGC	p.A596G	PXDN_uc002qxb.1_Missense_Mutation_p.A596G	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	596	Ig-like C2-type 4.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GGTGTTCCGGGCCACACACTC	0.522		NA											5	57					0	0	0	0
ADCY3	109	broad.mit.edu	37	2	25050956	25050956	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:25050956C>T	uc002rfs.3	-	13	2446	c.2247G>A	c.(2245-2247)GAG>GAA	p.E749E	ADCY3_uc002rfr.3_Intron|ADCY3_uc010ykm.1_Silent_p.E749E	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	749					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					ACTTGGGGTTCTCCAGGCAGC	0.607		NA									OREG0014498	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	36					0	0	0	0
MAPRE3	22924	broad.mit.edu	37	2	27247054	27247054	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:27247054G>C	uc002rhw.2	+	4	511	c.358G>C	c.(358-360)GAT>CAT	p.D120H	MAPRE3_uc002rhx.2_Missense_Mutation_p.D120H	NM_012326	NP_036458	Q9UPY8	MARE3_HUMAN	microtubule-associated protein, RP/EB family,	120					cell division|mitosis|positive regulation of transcription, DNA-dependent	cytoplasm|cytoplasmic microtubule|microtubule|midbody|perinuclear region of cytoplasm	microtubule binding|protein binding|small GTPase regulator activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGCAAACTATGATGGAAAGGA	0.413		NA											7	34					0	0	0	0
BIRC6	57448	broad.mit.edu	37	2	32667279	32667279	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:32667279C>T	uc010ezu.2	+	18	4225	c.4091C>T	c.(4090-4092)TCA>TTA	p.S1364L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1364					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GGAGTTCATTCAAATGGACCC	0.388		NA											6	43					0	0	0	0
HEATR5B	54497	broad.mit.edu	37	2	37217854	37217854	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:37217854G>C	uc002rpp.1	-	34	5730	c.5634C>G	c.(5632-5634)GTC>GTG	p.V1878V	HEATR5B_uc002rpo.1_Silent_p.V190V|HEATR5B_uc010ezy.1_Silent_p.V373V	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1878							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GTAATGACTGGACTCCTATTA	0.373		NA											10	47					0	0	0	0
C2orf78	388960	broad.mit.edu	37	2	74041177	74041177	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:74041177C>G	uc002sjr.1	+	2	792	c.671C>G	c.(670-672)TCC>TGC	p.S224C		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	224										ovary(2)	2						CCTCAACTATCCTGCCTGCAA	0.483		NA											18	74					0	0	0	0
CTNNA2	1496	broad.mit.edu	37	2	80097015	80097016	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:80097015_80097016GG>TT	uc010ysh.1	+	4	544_545	c.539_540GG>TT	c.(538-540)GGG>GTT	p.G180V	CTNNA2_uc010yse.1_Missense_Mutation_p.G180V|CTNNA2_uc010ysf.1_Missense_Mutation_p.G180V|CTNNA2_uc010ysg.1_Missense_Mutation_p.G180V	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	180					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AAAGAGTTTGGGAAAGAGATGG	0.401		NA											8	52					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530635	80530635	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:80530635C>G	uc002sok.1	-	2	580	c.310G>C	c.(310-312)GTG>CTG	p.V104L	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	104	LRR 1.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						TCCCCCTGCACGGAGCAGATG	0.597		NA								HNSCC(69;0.2)			22	110					0	0	0	0
GPAT2	150763	broad.mit.edu	37	2	96689186	96689186	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:96689186G>A	uc002svf.2	-	18	2122	c.1899C>T	c.(1897-1899)ACC>ACT	p.T633T	GPAT2_uc002svd.2_Silent_p.T452T|GPAT2_uc002sve.2_Silent_p.T435T|GPAT2_uc002svg.2_Silent_p.T512T|GPAT2_uc010yuh.1_Silent_p.T562T|GPAT2_uc002svh.2_Intron	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	633					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						GGGAGCCTGGGGTCTAGGGGC	0.567		NA											10	41					0	0	0	0
KYNU	8942	broad.mit.edu	37	2	143712377	143712377	+	Splice_Site	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:143712377A>G	uc002tvl.2	+	5	504	c.374_splice	c.e5-2	p.G125_splice	KYNU_uc002tvk.2_Splice_Site_p.G125_splice|KYNU_uc010fnm.2_Splice_Site_p.G125_splice	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a						anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TTTATTTTACAGGAGCCAATG	0.303		NA											11	27					0	0	0	0
ATP5G3	518	broad.mit.edu	37	2	176043799	176043799	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:176043799G>C	uc002ujz.3	-	3	570	c.300C>G	c.(298-300)ATC>ATG	p.I100M	ATP5G3_uc002uka.3_Missense_Mutation_p.I100M|ATP5G3_uc002ukb.1_Missense_Mutation_p.I100M	NM_001002258	NP_001002258	P48201	AT5G3_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	100	Helical; (Potential).				ATP hydrolysis coupled proton transport|ATP synthesis coupled proton transport	integral to membrane|mitochondrial proton-transporting ATP synthase complex|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity|lipid binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.147)			CATAACCAATGATAAGGCTGC	0.388		NA											11	42					0	0	0	0
OSBPL6	114880	broad.mit.edu	37	2	179259094	179259094	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:179259094G>A	uc002ulx.2	+	24	3006	c.2628G>A	c.(2626-2628)GAG>GAA	p.E876E	OSBPL6_uc002uly.2_Silent_p.E901E|OSBPL6_uc010zfe.1_Silent_p.E845E|OSBPL6_uc002ulz.2_Silent_p.E840E|OSBPL6_uc002uma.2_Silent_p.E880E	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	876					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			AAAGAGTAGAGGAACTCCAGA	0.348		NA											22	66					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179579978	179579978	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:179579978G>A	uc010zfg.1	-	87	22427	c.22203C>T	c.(22201-22203)TTC>TTT	p.F7401F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F4062F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8328							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTTTTGCGGAAAATGGGTG	0.388		NA											19	43					0	0	0	0
FRZB	2487	broad.mit.edu	37	2	183731215	183731215	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:183731215G>A	uc002upa.1	-	1	284	c.66C>T	c.(64-66)CTC>CTT	p.L22L		NM_001463	NP_001454	Q92765	SFRP3_HUMAN	frizzled-related protein precursor	22					brain development|cochlea morphogenesis|gonad development|mammary gland involution|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of hepatocyte differentiation|positive regulation of apoptosis|positive regulation of fat cell differentiation|skeletal system development|vasculature development|Wnt receptor signaling pathway	cytoplasm|extracellular space|membrane	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.109)|Epithelial(96;0.231)			GGAGCAGGCAGAGAGCAGCCA	0.706		NA											4	5					0	0	0	0
CFLAR	8837	broad.mit.edu	37	2	202005138	202005138	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:202005138C>T	uc002uxb.3	+	5	1034	c.582C>T	c.(580-582)CTC>CTT	p.L194L	CFLAR_uc002uwz.2_Silent_p.L194L|CFLAR_uc002uxa.3_Silent_p.L194L|CFLAR_uc010zhk.1_Silent_p.L98L|CFLAR_uc002uxc.3_Silent_p.L194L|CFLAR_uc010zhl.1_Silent_p.L98L|CFLAR_uc010fsw.1_RNA|CFLAR_uc002uxd.3_Silent_p.L194L|CFLAR_uc002uxe.2_Silent_p.L194L|CFLAR_uc002uxf.2_Silent_p.L194L|CFLAR_uc010fsy.2_RNA|CFLAR_uc010fsx.2_Silent_p.L194L|CFLAR_uc010zhm.1_Silent_p.L98L|CFLAR_uc010fsz.2_5'UTR|CFLAR_uc002uxg.2_5'UTR|uc002uxh.1_RNA	NM_003879	NP_003870	O15519	CFLAR_HUMAN	CASP8 and FADD-like apoptosis regulator isoform	194	Interaction with caspase-8 propeptide.|Interaction with FADD.|Interaction with caspase-3.|Not proteolytically processed and involved in apoptosis inhibition.|Interaction with TRAF1 and TRAF2.|Interaction with caspase-8.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|interspecies interaction between organisms|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis		cysteine-type endopeptidase activity|protein binding				0						AAAAGAGTCTCAAGGATCCTT	0.388		NA											13	38					0	0	0	0
ING5	84289	broad.mit.edu	37	2	242662623	242662623	+	Splice_Site	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr2:242662623A>T	uc002wcd.2	+	7	644	c.619_splice	c.e7-2	p.C207_splice		NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5						DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		TTTACTTTGCAGTGTCCAATT	0.522		NA											57	191					0	0	0	0
CPXM1	56265	broad.mit.edu	37	20	2775946	2775946	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr20:2775946C>A	uc002wgu.2	-	12	1901	c.1837G>T	c.(1837-1839)GCC>TCC	p.A613S	CPXM1_uc010gas.2_Missense_Mutation_p.A539S	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	613					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						GTGAGGAGGGCGTCTTTGTTG	0.517		NA											6	43					8.13e-05	0.000138603	1	0
ADAM33	80332	broad.mit.edu	37	20	3655732	3655732	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr20:3655732T>A	uc002wit.2	-	4	362	c.275A>T	c.(274-276)TAC>TTC	p.Y92F	ADAM33_uc002wir.1_Missense_Mutation_p.Y92F|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Missense_Mutation_p.Y92F|ADAM33_uc002wiw.1_RNA|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Missense_Mutation_p.Y91F|ADAM33_uc010zqg.1_Missense_Mutation_p.Y91F|ADAM33_uc010zqh.1_Missense_Mutation_p.Y92F	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	92	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GGTTTCTATGTATCCTGGGGC	0.602		NA											21	52					0	0	0	0
C20orf12	55184	broad.mit.edu	37	20	18393348	18393348	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr20:18393348C>G	uc010zsa.1	-	13	1640	c.1431G>C	c.(1429-1431)CAG>CAC	p.Q477H	C20orf12_uc010zrz.1_5'UTR|C20orf12_uc002wqp.3_Missense_Mutation_p.Q168H|C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Missense_Mutation_p.Q344H|C20orf12_uc002wqq.3_Missense_Mutation_p.Q458H	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	285						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				TCTCCTGCCTCTGCTTTTGAG	0.517		NA											19	174					0	0	0	0
BPIL3	128859	broad.mit.edu	37	20	31620830	31620830	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr20:31620830G>A	uc010zuc.1	+	2	138	c.138G>A	c.(136-138)AAG>AAA	p.K46K	BPIL3_uc010zud.1_5'UTR	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	46						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						TCCTGGAGAAGATGGCAGCCG	0.557		NA											16	87					0	0	0	0
ZNF831	128611	broad.mit.edu	37	20	57767508	57767508	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr20:57767508C>G	uc002yan.2	+	1	1434	c.1434C>G	c.(1432-1434)GAC>GAG	p.D478E		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	478						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CGCCCCCAGACAAGTCTCGGC	0.662		NA											13	47					0	0	0	0
OGFR	11054	broad.mit.edu	37	20	61444725	61444725	+	Silent	SNP	G	G	A	rs74520364		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr20:61444725G>A	uc002ydj.2	+	7	1793	c.1758G>A	c.(1756-1758)CCG>CCA	p.P586P	OGFR_uc002ydk.2_Silent_p.P569P|OGFR_uc002ydl.2_Silent_p.P534P|uc011aam.1_Intron	NM_007346	NP_031372	Q9NZT2	OGFR_HUMAN	opioid growth factor receptor	586	7 X 20 AA approximate tandem repeats of [ST]-P-S-E-T-P-G-P-[SR]-P-A-G-P-[AT]- [GR]-D-E-P-A-[EK].|4.				regulation of cell growth	cytoplasm|membrane|nucleus	opioid receptor activity				0	Breast(26;3.65e-08)					GCCCCAGCCCGGCAGGACCTA	0.741		NA											3	7					0	0	0	0
KRTAP20-1	337975	broad.mit.edu	37	21	31988891	31988891	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr21:31988891G>T	uc011ade.1	+	1	118	c.118G>T	c.(118-120)GGC>TGC	p.G40C	KRTAP6-1_uc002yop.2_5'Flank	NM_181615	NP_853646	Q3LI63	KR201_HUMAN	keratin associated protein 20-1	40						intermediate filament				breast(1)	1						CTATGGAAATGGCTACTACTG	0.463		NA											11	42					1.09e-07	1.99e-07	1	0
ADARB1	104	broad.mit.edu	37	21	46596174	46596174	+	Silent	SNP	G	G	A	rs146135960	byFrequency	TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr21:46596174G>A	uc002zgy.2	+	4	993	c.558G>A	c.(556-558)GCG>GCA	p.A186A	ADARB1_uc002zgr.2_Silent_p.A186A|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Silent_p.A186A|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Silent_p.A186A|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Silent_p.A235A	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	186					adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		CTGACAAGGCGGAGCCTCCCT	0.592		NA											6	26					0	0	0	0
PI4KA	5297	broad.mit.edu	37	22	21064999	21064999	+	Missense_Mutation	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:21064999T>C	uc002zsz.3	-	52	6128	c.5897A>G	c.(5896-5898)TAC>TGC	p.Y1966C	PI4KA_uc010gsp.2_Missense_Mutation_p.Y357C|PI4KA_uc002zsy.3_Missense_Mutation_p.Y776C	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1966	PI3K/PI4K.				phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CACAGCCAGGTAGCCTCGGAC	0.587		NA											40	171					0	0	0	0
HIC2	23119	broad.mit.edu	37	22	21799710	21799710	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:21799710C>T	uc002zur.3	+	3	756	c.526C>T	c.(526-528)CAG>TAG	p.Q176*	HIC2_uc002zus.3_Nonsense_Mutation_p.Q176*	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	176				Q -> R (in Ref. 3; BAA82972).	negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				AGCTCGGTATCAGGGGCTCGT	0.677		NA											14	12					0	0	0	0
ZNRF3	84133	broad.mit.edu	37	22	29442723	29442723	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:29442723C>A	uc003aeg.2	+	6	629	c.464C>A	c.(463-465)GCT>GAT	p.A155D	ZNRF3_uc003aeh.1_Missense_Mutation_p.A155D	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	255	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						AACAGGCTGGCTGTGCAGGCT	0.562		NA											50	131					4.86e-25	9.9e-25	1	0
MTMR3	8897	broad.mit.edu	37	22	30412531	30412531	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:30412531G>A	uc003agv.3	+	15	1846	c.1518G>A	c.(1516-1518)CAG>CAA	p.Q506Q	MTMR3_uc003agu.3_Silent_p.Q506Q|MTMR3_uc003agw.3_Silent_p.Q506Q	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	506	Myotubularin phosphatase.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			AACTGGTGCAGCATACCTATT	0.478		NA											39	120					0	0	0	0
PES1	23481	broad.mit.edu	37	22	30977575	30977575	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:30977575C>T	uc003aij.1	-	7	761	c.687G>A	c.(685-687)ACG>ACA	p.T229T	PES1_uc003aik.1_Silent_p.T229T|PES1_uc003ail.1_Silent_p.T212T|PES1_uc003aim.1_Silent_p.T229T|PES1_uc003ain.1_Silent_p.T90T|PES1_uc003aio.1_Silent_p.T90T	NM_014303	NP_055118	O00541	PESC_HUMAN	pescadillo homolog 1, containing BRCT domain	229	Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	chromosome|nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						AGCCCAGCAGCGTGGTGTAGA	0.597		NA											5	34					0	0	0	0
DEPDC5	9681	broad.mit.edu	37	22	32217595	32217595	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:32217595G>A	uc003als.2	+	23	2120	c.1978G>A	c.(1978-1980)GAG>AAG	p.E660K	DEPDC5_uc011als.1_Intron|DEPDC5_uc011alu.1_Missense_Mutation_p.E660K|DEPDC5_uc011alv.1_Intron|DEPDC5_uc003alt.2_Missense_Mutation_p.E660K|DEPDC5_uc003alu.2_Missense_Mutation_p.E100K|DEPDC5_uc003alv.2_Intron|DEPDC5_uc011alw.1_5'Flank|DEPDC5_uc011alt.1_Intron	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	660					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						AGAGCTGCTGGAGTTAGCATA	0.557		NA											24	217					0	0	0	0
MPPED1	758	broad.mit.edu	37	22	43821067	43821067	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:43821067G>C	uc011apv.1	+	2	299	c.76G>C	c.(76-78)GCA>CCA	p.A26P	MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.A26P|MPPED1_uc011apz.1_Missense_Mutation_p.A59P	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	26							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				CCTGGGCATGGCATTCTCCCA	0.697		NA											12	22					0	0	0	0
PARVG	64098	broad.mit.edu	37	22	44585010	44585010	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:44585010C>T	uc011aqe.1	+	6	688	c.264C>T	c.(262-264)CTC>CTT	p.L88L	PARVG_uc003bep.2_Silent_p.L88L|PARVG_uc011aqf.1_Silent_p.L88L|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	88	CH 1.				cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				TGGCGGCGCTCAAGCTGGAAG	0.652		NA											5	61					0	0	0	0
GRAMD4	23151	broad.mit.edu	37	22	47033858	47033858	+	Splice_Site	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:47033858G>T	uc003bhx.2	+	2	322	c.283_splice	c.e2+1	p.Q95_splice	GRAMD4_uc010had.2_Splice_Site_p.Q34_splice	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein						apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		CATTTCTTACGTGAGTACCAG	0.522		NA											31	94					9.04e-19	1.82e-18	1	0
CERK	64781	broad.mit.edu	37	22	47095335	47095335	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:47095335G>T	uc003bia.2	-	8	925	c.818C>A	c.(817-819)TCA>TAA	p.S273*	CERK_uc010hae.2_Nonsense_Mutation_p.S75*	NM_022766	NP_073603	Q8TCT0	CERK1_HUMAN	ceramide kinase	273	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|ceramide metabolic process	integral to membrane of membrane fraction|membrane|nucleus	ATP binding|ceramide kinase activity|diacylglycerol kinase activity|magnesium ion binding			skin(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GTGGTGGACTGAGGACACATC	0.612		NA											16	113					1.15e-07	2.11e-07	1	0
SMARCC1	6599	broad.mit.edu	37	3	47712147	47712147	+	Splice_Site	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:47712147C>A	uc003crq.2	-	19	2017	c.1899_splice	c.e19+1	p.E633_splice	SMARCC1_uc011bbc.1_Splice_Site|SMARCC1_uc011bbd.1_Splice_Site_p.E524_splice	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated						chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		AATCTGCTTACCTCCAGGAGT	0.289		NA											5	20					0.00198382	0.00329456	1	0
CNTN3	5067	broad.mit.edu	37	3	74350693	74350693	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:74350693C>A	uc003dpm.1	-	15	2031	c.1951G>T	c.(1951-1953)GAG>TAG	p.E651*		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	651	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TCGATGACCTCAGGCACTACA	0.448		NA											25	48					1.66e-10	3.14e-10	1	0
CNTN3	5067	broad.mit.edu	37	3	74411068	74411068	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:74411068C>T	uc003dpm.1	-	10	1417	c.1337G>A	c.(1336-1338)GGG>GAG	p.G446E		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	446	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		GCTCACATCCCCCTTCTTCCA	0.473		NA											12	35					0	0	0	0
POU1F1	5449	broad.mit.edu	37	3	87325510	87325510	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:87325510G>A	uc003dqq.1	-	1	228	c.103C>T	c.(103-105)CTA>TTA	p.L35L	POU1F1_uc010hoj.1_Silent_p.L35L	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	35					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		GAGACTGGTAGACACTCGGCA	0.453		NA											14	64					0	0	0	0
LNP1	348801	broad.mit.edu	37	3	100170695	100170695	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:100170695C>A	uc003dtx.3	+	3	1569	c.289C>A	c.(289-291)CCA>ACA	p.P97T	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	97											0						ATTCAAGGAGCCACTGGAATC	0.453		NA											15	59					3.46e-05	5.99e-05	1	0
ADCY5	111	broad.mit.edu	37	3	123019032	123019032	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:123019032G>A	uc003egh.1	-	15	2835	c.2835C>T	c.(2833-2835)CTC>CTT	p.L945L	ADCY5_uc003egg.1_Silent_p.L578L|ADCY5_uc003egi.1_Silent_p.L504L	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	945	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		CCTCCACGATGAGCACGTAGA	0.632		NA											5	58					0	0	0	0
PIK3R4	30849	broad.mit.edu	37	3	130463595	130463595	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:130463595G>A	uc003enj.2	-	2	1049	c.468C>T	c.(466-468)GTC>GTT	p.V156V		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	156	Protein kinase.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						TCCAACTGGTGACCATCACAT	0.443		NA											14	84					0	0	0	0
NEK11	79858	broad.mit.edu	37	3	130828653	130828653	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:130828653G>A	uc003eny.2	+	5	669	c.343G>A	c.(343-345)GAT>AAT	p.D115N	NEK11_uc003enx.2_Missense_Mutation_p.D115N|NEK11_uc003eoa.2_Missense_Mutation_p.D115N|NEK11_uc003enz.2_5'UTR|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_5'UTR|NEK11_uc011bll.1_Missense_Mutation_p.D115N|NEK11_uc003enw.1_Missense_Mutation_p.D115N|NEK11_uc011blm.1_Missense_Mutation_p.D115N|NEK11_uc010hto.1_5'UTR	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	115	Protein kinase.				cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						TCAGGGCCGAGATCTGGACGA	0.333		NA											8	101					0	0	0	0
ATP1B3	483	broad.mit.edu	37	3	141622516	141622516	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:141622516C>G	uc003eug.1	+	2	338	c.164C>G	c.(163-165)TCA>TGA	p.S55*	ATP1B3_uc011bne.1_RNA|ATP1B3_uc003euh.1_Nonsense_Mutation_p.S41*	NM_001679	NP_001670	P54709	AT1B3_HUMAN	Na+/K+ -ATPase beta 3 subunit	55	Helical; Signal-anchor for type II membrane protein; (Potential).				ATP biosynthetic process|blood coagulation|leukocyte migration	melanosome|sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity				0						GCACTCTTCTCATTCACGATG	0.408		NA											16	81					0	0	0	0
CPB1	1360	broad.mit.edu	37	3	148562481	148562481	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:148562481G>T	uc003ewl.2	+	8	728	c.705G>T	c.(703-705)AAG>AAT	p.K235N		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	235					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			TTTGGAGAAAGACTCGCTCCA	0.438		NA											14	101					9.05e-12	1.76e-11	1	0
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	545	PI3K helical.		E -> G (in KERSEB).|E -> A (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E545K(735)|p.E545A(75)|p.E545G(55)|p.E545?(19)|p.E545D(15)|p.E545Q(12)|p.E545V(4)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGAAATCACTGAGCAGGAGAA	0.353	E545K(RERFLCSQ1_LUNG)|E545K(KYSE510_OESOPHAGUS)|E545K(NCIH508_LARGE_INTESTINE)|E545K(HCC202_BREAST)|E545K(BFTC909_KIDNEY)|E545K(HCT15_LARGE_INTESTINE)|E545K(NCIH596_LUNG)|E545K(L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|E545K(DLD1_LARGE_INTESTINE)|E545K(ESS1_ENDOMETRIUM)|E545K(MDAMB361_BREAST)|E545K(MKN1_STOMACH)|E545K(MCF7_BREAST)|E545K(NCIH460_LUNG)|E545K(TCCSUP_URINARY_TRACT)|E545K(HSC4_UPPER_AERODIGESTIVE_TRACT)|E545K(BC3C_URINARY_TRACT)|E545K(HUH28_BILIARY_TRACT)|E545K(HT1197_URINARY_TRACT)|E545K(TE5_OESOPHAGUS)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			9	56					0	0	0	0
ZNF639	51193	broad.mit.edu	37	3	179051458	179051458	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:179051458C>T	uc003fjq.1	+	6	1049	c.706C>T	c.(706-708)CGA>TGA	p.R236*	ZNF639_uc003fjr.1_Nonsense_Mutation_p.R236*	NM_016331	NP_057415	Q9UID6	ZN639_HUMAN	zinc finger protein 639	236	C2H2-type 2.				initiation of viral infection|negative regulation by host of viral transcription|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of cell growth|positive regulation of transcription, DNA-dependent	nucleus	protein self-association|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0	all_cancers(143;7.9e-17)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			AAATGTGTGTCGAGTATGCAA	0.353		NA											18	71					0	0	0	0
TTC14	151613	broad.mit.edu	37	3	180324283	180324283	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:180324283G>T	uc003fkk.2	+	9	1196	c.1064G>T	c.(1063-1065)GGA>GTA	p.G355V	TTC14_uc003fkl.2_Missense_Mutation_p.G355V|TTC14_uc003fkm.2_Missense_Mutation_p.G355V	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	355	TPR 3.						RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GCGACAAAAGGAAGTTTGAAC	0.373		NA											11	135					5.51e-06	9.69e-06	1	0
C3orf59	151963	broad.mit.edu	37	3	192516720	192516720	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:192516720G>C	uc011bsp.1	-	2	1252	c.931C>G	c.(931-933)CAG>GAG	p.Q311E		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	311											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		TTGCAGGCCTGATAGGCCTGC	0.557		NA											3	73					0	0	0	0
ATP13A3	79572	broad.mit.edu	37	3	194169313	194169313	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:194169313C>T	uc003fty.3	-	11	1425	c.1023G>A	c.(1021-1023)GTG>GTA	p.V341V	ATP13A3_uc003ftz.1_Silent_p.V47V	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	341					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		CTATTCCTTTCACATCCACTG	0.333		NA											11	53					0	0	0	0
MUC20	200958	broad.mit.edu	37	3	195451995	195451995	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr3:195451995C>G	uc010hzo.2	+	2	647	c.521C>G	c.(520-522)TCA>TGA	p.S174*	MUC20_uc010hzp.2_Nonsense_Mutation_p.S139*|MUC20_uc011bte.1_5'Flank	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	345	10.|12 X 20 AA approximate tandem repeats of S-S-E-S-S-A-S-S-D-S-P-H-P-V-I-T-P-S-R-A.|Ser-rich.		Missing.|Missing.|Missing.|Missing.		protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		GGCCTGTCCTCAGAGAGCAGC	0.587		NA											19	133					0	0	0	0
LDB2	9079	broad.mit.edu	37	4	16760821	16760821	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:16760821T>A	uc003goz.2	-	2	511	c.195A>T	c.(193-195)TTA>TTT	p.L65F	LDB2_uc003gpa.2_Missense_Mutation_p.L65F|LDB2_uc003gpb.2_Missense_Mutation_p.L65F|LDB2_uc011bxh.1_Missense_Mutation_p.L65F|LDB2_uc010iee.2_Missense_Mutation_p.L65F	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	65							LIM domain binding|transcription cofactor activity				0						ATGAAAGGGTTAATGTGGCGT	0.388		NA											11	47					0	0	0	0
SOD3	6649	broad.mit.edu	37	4	24801160	24801160	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:24801160G>T	uc003gqz.2	+	2	222	c.17G>T	c.(16-18)TGT>TTT	p.C6F	SOD3_uc003gqy.1_RNA	NM_003102	NP_003093	P08294	SODE_HUMAN	superoxide dismutase 3, extracellular precursor	6					removal of superoxide radicals	extracellular space|nucleus|soluble fraction	copper ion binding|heparin binding|protein binding|superoxide dismutase activity|zinc ion binding				0		Breast(46;0.0503)				GCGCTACTGTGTTCCTGCCTG	0.662		NA											3	13					0.004672	0.00764337	1	0
ATP8A1	10396	broad.mit.edu	37	4	42602537	42602538	+	Splice_Site	DNP	TG	TG	AT			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:42602537_42602538TG>AT	uc003gwr.2	-	6	642	c.410_splice	c.e6-1	p.V137_splice	ATP8A1_uc003gws.2_Splice_Site_p.V137_splice|ATP8A1_uc011byz.1_Splice_Site_p.V137_splice	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),						ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TTCTCAAAACTGGAAAGAGAAA	0.332		NA											5	27					0	0	0	0
ATP10D	57205	broad.mit.edu	37	4	47559897	47559897	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:47559897G>C	uc003gxk.1	+	12	2205	c.2041G>C	c.(2041-2043)GAG>CAG	p.E681Q	ATP10D_uc003gxl.1_Intron	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	681	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CCAGGTGTGTGAGAGCCCCCA	0.552		NA											6	44					0	0	0	0
AASDH	132949	broad.mit.edu	37	4	57221514	57221514	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:57221514G>A	uc003hbn.2	-	6	1090	c.937C>T	c.(937-939)CGA>TGA	p.R313*	AASDH_uc010ihb.2_5'UTR|AASDH_uc011caa.1_Nonsense_Mutation_p.R160*|AASDH_uc003hbo.2_Nonsense_Mutation_p.R213*|AASDH_uc011cab.1_5'UTR|AASDH_uc010ihc.2_Nonsense_Mutation_p.R313*|AASDH_uc003hbp.2_Nonsense_Mutation_p.R313*	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	313					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				GCTAATACTCGAAGAGAAGTA	0.368		NA											10	59					0	0	0	0
PPM1K	152926	broad.mit.edu	37	4	89189447	89189447	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:89189447C>A	uc003hrm.3	-	5	1137	c.747G>T	c.(745-747)TTG>TTT	p.L249F		NM_152542	NP_689755	Q8N3J5	PPM1K_HUMAN	protein phosphatase 1K (PP2C domain containing)	249	PP2C-like.				protein dephosphorylation	mitochondrial matrix|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000192)		GAGGCTGCCCCAAACTATTCC	0.373		NA											12	37					6.43e-13	1.27e-12	1	0
FAM13A	10144	broad.mit.edu	37	4	89668809	89668809	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:89668809C>A	uc003hse.1	-	18	2563	c.2355G>T	c.(2353-2355)GCG>GCT	p.A785A	FAM13A_uc003hsa.1_Silent_p.A256A|FAM13A_uc003hsb.1_Silent_p.A459A|FAM13A_uc003hsd.1_Silent_p.A459A|FAM13A_uc003hsc.1_Silent_p.A445A|FAM13A_uc011cdq.1_Silent_p.A431A|FAM13A_uc003hsf.1_Silent_p.A371A|FAM13A_uc003hsg.1_Silent_p.A256A	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	785					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						GGCTGCTTTCCGCTCGCTTCT	0.498		NA											25	141					3.74e-18	7.5e-18	1	0
GRID2	2895	broad.mit.edu	37	4	94693335	94693335	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:94693335C>G	uc011cdt.1	+	16	2968	c.2710C>G	c.(2710-2712)CCT>GCT	p.P904A	GRID2_uc011cdu.1_Missense_Mutation_p.P809A	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	904	Cytoplasmic (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TGATTTGACCCCTCTGGACAT	0.458		NA											5	80					0	0	0	0
CENPE	1062	broad.mit.edu	37	4	104035710	104035710	+	Splice_Site	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:104035710C>T	uc003hxb.1	-	46	7533	c.7443_splice	c.e46-1	p.E2481_splice	CENPE_uc003hxc.1_Splice_Site_p.E2360_splice	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E						blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		AGCACTGATTCTAACAAAAAC	0.348		NA											5	25					0	0	0	0
COL25A1	84570	broad.mit.edu	37	4	109769944	109769944	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:109769944G>C	uc003hze.1	-	26	1936	c.1405C>G	c.(1405-1407)CCA>GCA	p.P469A	COL25A1_uc003hzg.2_Missense_Mutation_p.P469A|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.P227A	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	469	Extracellular (Potential).|Collagen-like 6.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GGGATTCCTGGAGATCCCTGC	0.348		NA											9	36					0	0	0	0
CAMK2D	817	broad.mit.edu	37	4	114376956	114376956	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:114376956C>T	uc003ibi.2	-	18	2314	c.1455G>A	c.(1453-1455)GGG>GGA	p.G485G	CAMK2D_uc003ibj.2_Intron|CAMK2D_uc003ibk.2_Intron|CAMK2D_uc003ibo.3_Silent_p.G519G	NM_001221	NP_001212	Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II	485					interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		AGTTTTCTTTCCCATTTGGAA	0.423		NA											6	36					0	0	0	0
PCDH10	57575	broad.mit.edu	37	4	134084409	134084409	+	Silent	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:134084409G>T	uc003iha.2	+	4	3901	c.3075G>T	c.(3073-3075)ACG>ACT	p.T1025T		NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	1025	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TGACTAATACGCGAGCGCCTT	0.483		NA											14	134					6.72e-11	1.29e-10	1	0
ELF2	1998	broad.mit.edu	37	4	139980635	139980635	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:139980635C>T	uc003ihp.1	-	9	1454	c.1248G>A	c.(1246-1248)GCG>GCA	p.A416A	ELF2_uc003ihm.1_Silent_p.A368A|ELF2_uc003ihn.1_Silent_p.A356A|ELF2_uc003iho.1_Silent_p.A339A|ELF2_uc011chc.1_Silent_p.A231A	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	428					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					TTGGAGAGGTCGCTGTTGTTG	0.428		NA											12	34					0	0	0	0
FBXW7	55294	broad.mit.edu	37	4	153247311	153247311	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:153247311C>T	uc003ims.2	-	10	1640	c.1491G>A	c.(1489-1491)TTG>TTA	p.L497L	FBXW7_uc011cii.1_Silent_p.L497L|FBXW7_uc003imt.2_Silent_p.L497L|FBXW7_uc011cih.1_Silent_p.L321L|FBXW7_uc003imq.2_Silent_p.L417L|FBXW7_uc003imr.2_Silent_p.L379L	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	497	WD 3.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				CATGACCCATCAAAACATGTA	0.453		NA	Mis|N|D|F		colorectal|endometrial|T-ALL								5	74					0	0	0	0
MARCH1	55016	broad.mit.edu	37	4	164466767	164466767	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:164466767G>C	uc003iqs.1	-	7	1529	c.552C>G	c.(550-552)ATC>ATG	p.I184M	MARCH1_uc003iqr.1_Missense_Mutation_p.I167M	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	184					antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGCCTTGCTTGATTTCCTCCG	0.438		NA											3	39					0	0	0	0
TLL1	7092	broad.mit.edu	37	4	166795090	166795090	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:166795090G>A	uc003irh.1	+	1	681	c.34G>A	c.(34-36)GTG>ATG	p.V12M	TLL1_uc011cjn.1_Missense_Mutation_p.V12M|TLL1_uc011cjo.1_Translation_Start_Site	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	12					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GAGGATGCTCGTGTGGCTGGT	0.592		NA											8	120					0	0	0	0
GPM6A	2823	broad.mit.edu	37	4	176573010	176573010	+	Silent	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr4:176573010A>G	uc003iuf.2	-	4	1320	c.516T>C	c.(514-516)AAT>AAC	p.N172N	GPM6A_uc011ckj.1_Silent_p.N165N|GPM6A_uc003iug.2_Silent_p.N172N|GPM6A_uc003iuh.2_Silent_p.N161N	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	172	Extracellular (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		CCAAGCAGAGATTTGCTCCCT	0.463		NA											10	74					0	0	0	0
SDHA	6389	broad.mit.edu	37	5	228381	228381	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:228381A>T	uc003jao.3	+	6	818	c.703A>T	c.(703-705)ATC>TTC	p.I235F	SDHA_uc003jan.2_Missense_Mutation_p.I235F|SDHA_uc011clv.1_Missense_Mutation_p.I235F|SDHA_uc011clw.1_Missense_Mutation_p.I187F|SDHA_uc003jap.3_Missense_Mutation_p.I235F|SDHA_uc003jaq.3_Missense_Mutation_p.I10F|SDHA_uc003jar.3_5'Flank	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	235					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	CCGTGGTGTCATCGCACTGTG	0.428		NA							Familial_Paragangliomas				3	38					0	0	0	0
ADCY2	108	broad.mit.edu	37	5	7717278	7717278	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:7717278C>A	uc003jdz.1	+	12	1698	c.1631C>A	c.(1630-1632)TCA>TAA	p.S544*	ADCY2_uc011cmo.1_Nonsense_Mutation_p.S364*	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	544	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						AGAACCAAGTCACAAAAGAAG	0.239		NA											5	50					8.13e-05	0.000138603	1	0
CTNND2	1501	broad.mit.edu	37	5	11236806	11236806	+	Silent	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:11236806G>T	uc003jfa.1	-	10	1903	c.1758C>A	c.(1756-1758)GCC>GCA	p.A586A	CTNND2_uc010itt.2_Silent_p.A495A|CTNND2_uc011cmy.1_Silent_p.A249A|CTNND2_uc011cmz.1_Silent_p.A153A|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.A153A	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	586	ARM 3.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CACTGACCTCGGCTTTAATTT	0.443		NA											27	115					2.8e-10	5.28e-10	1	0
PARP8	79668	broad.mit.edu	37	5	50092850	50092850	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:50092850G>A	uc003jon.3	+	14	1645	c.1463G>A	c.(1462-1464)CGT>CAT	p.R488H	PARP8_uc011cpz.1_Missense_Mutation_p.R380H|PARP8_uc003joo.2_Missense_Mutation_p.R488H|PARP8_uc003jop.2_Missense_Mutation_p.R488H	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	488						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				GTACGAGACCGTGGCTTCCTG	0.294		NA											8	20					0	0	0	0
HTR1A	3350	broad.mit.edu	37	5	63256365	63256365	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:63256365C>A	uc011cqt.1	-	1	1182	c.1182G>T	c.(1180-1182)CTG>CTT	p.L394L		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	394	Helical; Name=7; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CGGGGTTAAGCAGAGAGTTGG	0.498		NA											47	159					4.01e-20	8.09e-20	1	0
HTR1A	3350	broad.mit.edu	37	5	63256923	63256923	+	Silent	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:63256923C>A	uc011cqt.1	-	1	624	c.624G>T	c.(622-624)CTG>CTT	p.L208L		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	208	Helical; Name=5; (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCATGAGCAGCAGCGGGATGT	0.592		NA											37	122					2.66e-13	5.26e-13	1	0
MSH3	4437	broad.mit.edu	37	5	79966002	79966002	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:79966002C>G	uc003kgz.2	+	4	919	c.666C>G	c.(664-666)AAC>AAG	p.N222K		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	222	Interaction with EXO1.				maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		AATCAGCTAACAAACGGTCCA	0.378		NA						MMR					8	22					0	0	0	0
SRFBP1	153443	broad.mit.edu	37	5	121355833	121355833	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:121355833T>A	uc003kst.1	+	6	475	c.403T>A	c.(403-405)TCA>ACA	p.S135T		NM_152546	NP_689759	Q8NEF9	SRFB1_HUMAN	serum response factor binding protein 1	135	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	perinuclear region of cytoplasm					0		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000227)|Epithelial(69;0.000365)|all cancers(49;0.00517)		TGAAGTTGAGTCATCAAAGAA	0.368		NA											12	31					0	0	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562680	140562680	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:140562680C>T	uc003liv.2	+	1	1701	c.546C>T	c.(544-546)ATC>ATT	p.I182I	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	182	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGTTCTAATCCATGAATTCA	0.458		NA											12	33					0	0	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563947	140563947	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:140563947C>A	uc003liv.2	+	1	2968	c.1813C>A	c.(1813-1815)CAG>AAG	p.Q605K	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	605	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGTCGTACCAGCTGCTCAA	0.706		NA											35	101					2.87e-16	5.73e-16	1	0
ARAP3	64411	broad.mit.edu	37	5	141033762	141033762	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:141033762C>G	uc003llm.2	-	33	4468	c.4390G>C	c.(4390-4392)GAG>CAG	p.E1464Q	ARAP3_uc003lll.2_Missense_Mutation_p.E415Q|ARAP3_uc011dbe.1_Missense_Mutation_p.E1113Q|ARAP3_uc003lln.2_Missense_Mutation_p.E1295Q	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1464	Pro-rich.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						GGAGGGGGCTCAGGTGGCCTC	0.612		NA											15	48					0	0	0	0
PCDH1	5097	broad.mit.edu	37	5	141233941	141233941	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:141233941A>T	uc003llp.2	-	5	3497	c.3380T>A	c.(3379-3381)TTT>TAT	p.F1127Y		NM_032420	NP_115796	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 2 precursor	Error:Variant_position_missing_in_Q08174_after_alignment					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		AGAGTGGCCAAACTCACTGCA	0.587		NA											8	21					0	0	0	0
DOCK2	1794	broad.mit.edu	37	5	169484632	169484632	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:169484632G>C	uc003maf.2	+	44	4509	c.4429G>C	c.(4429-4431)GGG>CGG	p.G1477R	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.G969R|DOCK2_uc003mah.2_Missense_Mutation_p.G33R	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1477	DHR-2.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAAGCTGCCGGGGATCCTGCG	0.582		NA											12	43					0	0	0	0
FLT4	2324	broad.mit.edu	37	5	180057697	180057697	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr5:180057697G>A	uc003mma.3	-	3	337	c.258C>T	c.(256-258)GGC>GGT	p.G86G	FLT4_uc003mlz.3_Silent_p.G86G|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Silent_p.G86G|FLT4_uc011dgz.1_Silent_p.G86G|FLT4_uc011dha.1_Silent_p.G86G	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	86	Ig-like C2-type 1.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGGCGTCTGTGCCCTCGCAGT	0.632		NA							Congenital_Hereditary_Lymphedema				16	51					0	0	0	0
HIST1H2BG	8339	broad.mit.edu	37	6	26216847	26216847	+	Missense_Mutation	SNP	G	G	C	rs149681157		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:26216847G>C	uc003ngz.2	-	1	26	c.25C>G	c.(25-27)CCT>GCT	p.P9A	HIST1H2AE_uc003nha.1_5'Flank	NM_003518	NP_003509	P62807	H2B1C_HUMAN	histone cluster 1, H2bg	9					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1		all_hematologic(11;0.196)				TTCGGAGCAGGAGCTGACTTA	0.483		NA											11	67					0	0	0	0
TNXB	7148	broad.mit.edu	37	6	32036752	32036752	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:32036752C>G	uc003nzl.2	-	16	5951	c.5749G>C	c.(5749-5751)GAT>CAT	p.D1917H		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1999	Fibronectin type-III 12.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCGTCTCTATCTGTGTACTGG	0.552		NA											17	61					0	0	0	0
APOBEC2	10930	broad.mit.edu	37	6	41029282	41029282	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:41029282G>A	uc003opl.2	+	2	494	c.347G>A	c.(346-348)CGG>CAG	p.R116Q	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_RNA	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	116					DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCAGCCCTGCGGTACAATGTC	0.562		NA											13	155					0	0	0	0
BAI3	577	broad.mit.edu	37	6	70040462	70040462	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:70040462C>T	uc003pev.3	+	23	3548	c.3100C>T	c.(3100-3102)CTG>TTG	p.L1034L	BAI3_uc010kak.2_Silent_p.L1034L|BAI3_uc011dxx.1_Silent_p.L240L|BAI3_uc003pex.1_Silent_p.L164L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1034	Helical; Name=5; (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CGCTGTTGTCCTGGTAAACAT	0.353		NA											5	26					0	0	0	0
FUT9	10690	broad.mit.edu	37	6	96651056	96651056	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:96651056C>G	uc003pop.3	+	3	366	c.25C>G	c.(25-27)CTT>GTT	p.L9V		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	9	Cytoplasmic (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CAAAGGAATTCTTCGCCCATT	0.393		NA											15	69					0	0	0	0
FUT9	10690	broad.mit.edu	37	6	96651727	96651727	+	Silent	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:96651727T>C	uc003pop.3	+	3	1037	c.696T>C	c.(694-696)ATT>ATC	p.I232I		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	232	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		AAAATTTGATTCCTACCATAT	0.358		NA											5	21					0	0	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762242	130762243	+	Missense_Mutation	DNP	CG	CG	GT			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:130762242_130762243CG>GT	uc003qca.2	+	3	1546_1547	c.675_676CG>GT	c.(673-678)TCCGTG>TCGTTG	p.V226L	TMEM200A_uc010kfh.2_Missense_Mutation_p.V226L|TMEM200A_uc010kfi.2_Missense_Mutation_p.V226L|TMEM200A_uc003qcb.2_Missense_Mutation_p.V226L	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	226	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TGGACAGCTCCGTGGAGGAGGA	0.49		NA											6	44					0	0	0	0
TAAR6	319100	broad.mit.edu	37	6	132891511	132891511	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:132891511C>A	uc011eck.1	+	1	51	c.51C>A	c.(49-51)AAC>AAA	p.N17K		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	17	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		GCTACGCGAACGTGAATGGGT	0.493		NA											18	76					2.35e-11	4.54e-11	1	0
TAAR1	134864	broad.mit.edu	37	6	132966284	132966284	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:132966284C>G	uc003qdm.1	-	1	859	c.859G>C	c.(859-861)GAT>CAT	p.D287H		NM_138327	NP_612200	Q96RJ0	TAAR1_HUMAN	trace amine associated receptor 1	287	Extracellular (Potential).					plasma membrane					0	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00616)|GBM - Glioblastoma multiforme(226;0.0154)	Amphetamine(DB00182)	ATCAATACATCATTCAAAGTA	0.373		NA											10	45					0	0	0	0
EYA4	2070	broad.mit.edu	37	6	133802716	133802716	+	Silent	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:133802716G>T	uc003qec.3	+	12	1544	c.1086G>T	c.(1084-1086)CCG>CCT	p.P362P	EYA4_uc011ecq.1_Silent_p.P308P|EYA4_uc011ecr.1_Silent_p.P314P|EYA4_uc003qed.3_Silent_p.P362P|EYA4_uc003qee.3_Silent_p.P339P|EYA4_uc011ecs.1_Silent_p.P368P|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	362					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		ATCCCTCCCCGCCTCCTGATA	0.448		NA											23	82					7.42e-09	1.38e-08	1	0
SYNE1	23345	broad.mit.edu	37	6	152554980	152554980	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:152554980C>T	uc010kiw.2	-	112	21250	c.20648G>A	c.(20647-20649)CGC>CAC	p.R6883H	SYNE1_uc010kiv.2_Missense_Mutation_p.R1407H|SYNE1_uc003qos.3_Missense_Mutation_p.R1407H|SYNE1_uc003qot.3_Missense_Mutation_p.R6812H|SYNE1_uc003qou.3_Missense_Mutation_p.R6883H	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6883	Spectrin 21.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCTATCAATGCGCGACAGCTC	0.512		NA								HNSCC(10;0.0054)			10	39					0	0	0	0
RSPH3	83861	broad.mit.edu	37	6	159420840	159420840	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:159420840C>G	uc003qrx.2	-	1	359	c.169G>C	c.(169-171)GAC>CAC	p.D57H	RSPH3_uc010kju.2_Missense_Mutation_p.D57H|RSPH3_uc003qry.1_Missense_Mutation_p.D57H	NM_031924	NP_114130	Q86UC2	RSPH3_HUMAN	radial spoke 3 homolog	57										ovary(1)|skin(1)	2		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.36e-16)|BRCA - Breast invasive adenocarcinoma(81;5.92e-06)		AGGGTTCTGTCTGGGGGCGGG	0.682		NA											13	66					0	0	0	0
COL28A1	340267	broad.mit.edu	37	7	7412695	7412695	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:7412695C>G	uc003src.1	-	32	2959	c.2842G>C	c.(2842-2844)GAA>CAA	p.E948Q	COL28A1_uc011jxe.1_Missense_Mutation_p.E631Q	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	948	VWFA 2.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AGATTCATTTCTTTGTGGAAT	0.428		NA											8	39					0	0	0	0
TARP	445347	broad.mit.edu	37	7	38305125	38305125	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:38305125G>T	uc003tge.1	-	5	959	c.582C>A	c.(580-582)AAC>AAA	p.N194K	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_5'UTR|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						CCAGAATCGTGTTGCTCTTCT	0.418		NA											20	183					6.13e-19	1.23e-18	1	0
PKD1L1	168507	broad.mit.edu	37	7	47913505	47913505	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:47913505G>A	uc003tny.1	-	24	3888	c.3888C>T	c.(3886-3888)GGC>GGT	p.G1296G		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1296	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ACAGGTCCTCGCCCAGACAGT	0.502		NA											6	42					0	0	0	0
EGFR	1956	broad.mit.edu	37	7	55221793	55221793	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:55221793G>A	uc003tqk.2	+	7	1083	c.837G>A	c.(835-837)GTG>GTA	p.V279V	EGFR_uc003tqh.2_Silent_p.V279V|EGFR_uc003tqi.2_Silent_p.V279V|EGFR_uc003tqj.2_Silent_p.V279V|EGFR_uc010kzg.1_Silent_p.V234V|EGFR_uc011kco.1_Silent_p.V226V|EGFR_uc011kcp.1_5'Flank|EGFR_uc011kcq.1_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	279	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	AGATGGATGTGAACCCCGAGG	0.587		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			7	67					0	0	0	0
AKAP9	10142	broad.mit.edu	37	7	91730347	91730347	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:91730347G>C	uc003ulg.2	+	45	11299	c.11074G>C	c.(11074-11076)GAT>CAT	p.D3692H	AKAP9_uc003ulf.2_Missense_Mutation_p.D3684H|AKAP9_uc003uli.2_Missense_Mutation_p.D3315H|AKAP9_uc003ulj.2_Missense_Mutation_p.D1462H|AKAP9_uc003ull.2_Missense_Mutation_p.D588H	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3696					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TCTGAGCCCTGATTCTGAACA	0.383		NA	T	BRAF	papillary thyroid								7	29					0	0	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99124010	99124010	+	Silent	SNP	A	A	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:99124010A>G	uc003uqv.2	+	6	1471	c.1347A>G	c.(1345-1347)CTA>CTG	p.L449L	ZKSCAN5_uc010lfx.2_Silent_p.L449L|ZKSCAN5_uc003uqw.2_Silent_p.L449L|ZKSCAN5_uc003uqx.2_Silent_p.L376L|ZKSCAN5_uc003uqy.2_Silent_p.L185L	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	449	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TCGAACACCTAAAACGCCACT	0.502		NA											54	173					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100679091	100679091	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:100679091C>A	uc003uxp.1	+	3	4447	c.4394C>A	c.(4393-4395)ACG>AAG	p.T1465K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1465	Extracellular (Potential).|Ser-rich.|22.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCAGCAACACGCCGGTGGCC	0.473		NA											80	288					5.42e-27	1.1e-26	1	0
FBXL13	222235	broad.mit.edu	37	7	102665637	102665637	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:102665637C>A	uc003vaq.2	-	6	795	c.368G>T	c.(367-369)AGG>ATG	p.R123M	FBXL13_uc010liq.1_Translation_Start_Site|FBXL13_uc010lir.1_Missense_Mutation_p.R123M|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.R123M|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	123											0						GAGTATTAACCTATTTTTCCA	0.318		NA											8	19					0.000442599	0.00074735	1	0
RELN	5649	broad.mit.edu	37	7	103237037	103237037	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:103237037C>A	uc003vca.2	-	25	3565	c.3405G>T	c.(3403-3405)CAG>CAT	p.Q1135H	RELN_uc010liz.2_Missense_Mutation_p.Q1135H	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1135					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTCCGCCTATCTGGATGTAGA	0.502		NA											24	102					4.72e-08	8.75e-08	1	0
HYAL4	23553	broad.mit.edu	37	7	123516942	123516942	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:123516942C>T	uc003vlc.2	+	5	1817	c.1179C>T	c.(1177-1179)AAC>AAT	p.N393N	HYAL4_uc011knz.1_3'UTR	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	393	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						AGATGTGGAACGCGCCCAGTT	0.507		NA											10	60					0	0	0	0
TRYX3	136541	broad.mit.edu	37	7	141952173	141952173	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:141952173C>T	uc003vxb.2	-	5	914	c.594G>A	c.(592-594)CCG>CCA	p.P198P	TRYX3_uc003vxc.3_Silent_p.P198P	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	198	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					TGCAGATTGCCGGGGCAGCAG	0.393		NA											7	31					0	0	0	0
OR2A14	135941	broad.mit.edu	37	7	143826781	143826781	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:143826781G>C	uc011kua.1	+	1	576	c.576G>C	c.(574-576)TGG>TGC	p.W192C		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					CTGACACCTGGCTCAACCAGG	0.562		NA											48	240					0	0	0	0
SSPO	23145	broad.mit.edu	37	7	149486333	149486333	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:149486333C>A	uc010lpk.2	+	30	4309	c.4309C>A	c.(4309-4311)CGC>AGC	p.R1437S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1437	LDL-receptor class A 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCTCTGTGACCGCCAGGATGA	0.687		NA											6	29					0.00198382	0.00329456	1	0
RARRES2	5919	broad.mit.edu	37	7	150036164	150036164	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr7:150036164G>C	uc003wha.2	-	4	403	c.286C>G	c.(286-288)CGG>GGG	p.R96G	RARRES2_uc010lpp.1_Missense_Mutation_p.R96G	NM_002889	NP_002880	Q99969	RARR2_HUMAN	chemerin preproprotein	96					embryonic digestive tract development|in utero embryonic development|positive regulation of macrophage chemotaxis|retinoid metabolic process	extracellular matrix	receptor binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			AGGCATTTCCGTTTCCTCTGT	0.617		NA											18	76					0	0	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1876769	1876769	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:1876769G>C	uc003wpr.2	+	24	3052	c.2874G>C	c.(2872-2874)GTG>GTC	p.V958V	ARHGEF10_uc003wps.2_Silent_p.V920V|ARHGEF10_uc010lre.2_Silent_p.V609V	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	983					centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		CCCCGGCCGTGAGAGCTTCTG	0.612		NA											6	60					0	0	0	0
CSMD1	64478	broad.mit.edu	37	8	3256980	3256980	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:3256980C>G	uc011kwk.1	-	16	2731	c.2341G>C	c.(2341-2343)GAT>CAT	p.D781H	CSMD1_uc011kwj.1_Missense_Mutation_p.D173H	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	781	Extracellular (Potential).|CUB 5.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGTAAAGAATCCTTATAATAT	0.388		NA											12	48					0	0	0	0
PNOC	5368	broad.mit.edu	37	8	28196682	28196682	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:28196682C>T	uc010lva.2	+	3	460	c.252C>T	c.(250-252)CTC>CTT	p.L84L	PNOC_uc003xgp.2_Silent_p.L84L|PNOC_uc011lau.1_Silent_p.L20L	NM_006228	NP_006219	Q13519	PNOC_HUMAN	prepronociceptin precursor	84					neuropeptide signaling pathway|sensory perception|synaptic transmission	extracellular region	neuropeptide hormone activity|opioid peptide activity			central_nervous_system(1)	1		Ovarian(32;0.000953)		KIRC - Kidney renal clear cell carcinoma(542;0.104)|Kidney(114;0.125)|Colorectal(74;0.145)|BRCA - Breast invasive adenocarcinoma(99;0.245)		CGGCTGCTCTCTACCAGCCGA	0.652		NA											12	63					0	0	0	0
TEX15	56154	broad.mit.edu	37	8	30695362	30695362	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:30695362T>A	uc003xil.2	-	3	7289	c.7289A>T	c.(7288-7290)GAA>GTA	p.E2430V		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2430										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		ATTTAAATTTTCCTGTTGTCC	0.358		NA											39	157					0	0	0	0
MYST3	7994	broad.mit.edu	37	8	41791507	41791507	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:41791507C>G	uc010lxb.2	-	18	4775	c.4231G>C	c.(4231-4233)GAG>CAG	p.E1411Q	MYST3_uc010lxc.2_Missense_Mutation_p.E1411Q|MYST3_uc003xon.3_Missense_Mutation_p.E1411Q	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	1411	Poly-Glu.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TCTTCCTCCTCTTTTAATTCG	0.507		NA											20	72					0	0	0	0
MYST3	7994	broad.mit.edu	37	8	41798738	41798738	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:41798738G>C	uc010lxb.2	-	16	3205	c.2661C>G	c.(2659-2661)CTC>CTG	p.L887L	MYST3_uc010lxc.2_Silent_p.L887L|MYST3_uc003xon.3_Silent_p.L887L	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	887					histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TCTCTTCCAAGAGCAGTTTAG	0.483		NA											14	58					0	0	0	0
AP3M2	10947	broad.mit.edu	37	8	42024827	42024827	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:42024827G>A	uc003xop.2	+	8	1240	c.949G>A	c.(949-951)GGG>AGG	p.G317R	AP3M2_uc003xoo.2_Missense_Mutation_p.G317R|AP3M2_uc010lxe.2_Intron	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	317	MHD.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			GATGCCCAAGGGGGTCCTGAA	0.522		NA											11	47					0	0	0	0
HOOK3	84376	broad.mit.edu	37	8	42868217	42868217	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:42868217A>T	uc003xpr.2	+	20	2105	c.1863A>T	c.(1861-1863)AAA>AAT	p.K621N		NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	621	Potential.|Required for interaction with MSR1.|Required for association with Golgi.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			TAGATCCTAAACAGAATCAAG	0.333		NA	T	RET	papillary thyroid								6	22					0	0	0	0
SNTG1	54212	broad.mit.edu	37	8	51617301	51617301	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:51617301G>A	uc010lxy.1	+	17	1551	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K	SNTG1_uc003xqs.1_Missense_Mutation_p.E394K|SNTG1_uc010lxz.1_Missense_Mutation_p.E394K|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	394					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				TCTAGAAGTAGAACGGATACA	0.507		NA											4	31					0	0	0	0
ST18	9705	broad.mit.edu	37	8	53073977	53073977	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:53073977T>A	uc003xqz.2	-	9	1708	c.1552A>T	c.(1552-1554)ATA>TTA	p.I518L	ST18_uc011ldq.1_Missense_Mutation_p.I165L|ST18_uc011ldr.1_Missense_Mutation_p.I483L|ST18_uc011lds.1_Missense_Mutation_p.I423L|ST18_uc003xra.2_Missense_Mutation_p.I518L|ST18_uc003xrb.2_Missense_Mutation_p.I518L	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	518						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				ACTGTTTGTATGAGAGGGCGT	0.428		NA											24	78					0	0	0	0
RP1	6101	broad.mit.edu	37	8	55533682	55533682	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:55533682G>T	uc003xsd.1	+	2	304	c.156G>T	c.(154-156)AGG>AGT	p.R52S	RP1_uc011ldy.1_Missense_Mutation_p.R52S	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	52	Doublecortin 1.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GCGGGGTCAGGGTGGTGGTCA	0.557		NA											15	65					7.93e-07	1.42e-06	1	0
VPS13B	157680	broad.mit.edu	37	8	100831006	100831006	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:100831006G>A	uc003yiv.2	+	47	8697	c.8586G>A	c.(8584-8586)GAG>GAA	p.E2862E	VPS13B_uc003yiw.2_Silent_p.E2837E	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2862					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TACATTTGGAGAAAAGGAGTC	0.373		NA											15	111					0	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100831079	100831079	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:100831079G>A	uc003yiv.2	+	47	8770	c.8659G>A	c.(8659-8661)GAA>AAA	p.E2887K	VPS13B_uc003yiw.2_Missense_Mutation_p.E2862K	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2887					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			GCAAAACATAGAACCTGACCT	0.378		NA											13	67					0	0	0	0
SLC30A8	169026	broad.mit.edu	37	8	118183329	118183329	+	Missense_Mutation	SNP	G	G	T	rs139489847		TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:118183329G>T	uc003yoh.2	+	7	1116	c.886G>T	c.(886-888)GGG>TGG	p.G296W	SLC30A8_uc010mcz.2_Missense_Mutation_p.G247W|SLC30A8_uc011lia.1_Missense_Mutation_p.G247W|SLC30A8_uc003yog.2_Missense_Mutation_p.G247W	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	296	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			AGCAGTCGACGGGGTGCTGTC	0.448		NA											14	85					1.5e-05	2.61e-05	1	0
COL14A1	7373	broad.mit.edu	37	8	121296005	121296005	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:121296005G>T	uc003yox.2	+	32	4220	c.3955G>T	c.(3955-3957)GTT>TTT	p.V1319F	COL14A1_uc003yoz.2_Missense_Mutation_p.V284F	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1319	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATTGGTTGGGGTTATTTTAGA	0.358		NA											13	52					0.00136819	0.00228473	1	0
FAM135B	51059	broad.mit.edu	37	8	139155262	139155262	+	Silent	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:139155262G>T	uc003yuy.2	-	16	3802	c.3631C>A	c.(3631-3633)CGA>AGA	p.R1211R	FAM135B_uc003yux.2_Silent_p.R1112R|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.R773R|FAM135B_uc003yvb.2_3'UTR	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1211										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TACCTAATTCGGGATATGGAG	0.398		NA								HNSCC(54;0.14)			4	32					1.24e-05	2.16e-05	1	0
FAM135B	51059	broad.mit.edu	37	8	139165260	139165260	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:139165260C>T	uc003yuy.2	-	13	1629	c.1458G>A	c.(1456-1458)GTG>GTA	p.V486V	FAM135B_uc003yux.2_Silent_p.V387V|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.V48V|FAM135B_uc003yvb.2_Silent_p.V48V	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	486										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTTGTGTGGCCACATTCTCAC	0.393		NA								HNSCC(54;0.14)			10	78					0	0	0	0
COL22A1	169044	broad.mit.edu	37	8	139614357	139614357	+	Splice_Site	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:139614357C>A	uc003yvd.2	-	60	4632	c.4185_splice	c.e60+1	p.R1395_splice	COL22A1_uc011ljo.1_Splice_Site_p.R675_splice	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1						cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCTCCACTCACCCTTTCTCCT	0.572		NA								HNSCC(7;0.00092)			20	61					5.35e-07	9.63e-07	1	0
TSNARE1	203062	broad.mit.edu	37	8	143425409	143425409	+	Silent	SNP	G	G	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:143425409G>T	uc003ywk.2	-	4	781	c.663C>A	c.(661-663)CTC>CTA	p.L221L	TSNARE1_uc011lju.1_Silent_p.L221L|TSNARE1_uc003ywj.2_Silent_p.L221L|TSNARE1_uc003ywl.3_Intron	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	221					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCACGGGCGTGAGAGCCAGGG	0.706		NA											10	41					1.34e-11	2.59e-11	1	0
JRK	8629	broad.mit.edu	37	8	143747266	143747266	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:143747266G>C	uc003ywo.2	-	2	726	c.212C>G	c.(211-213)TCC>TGC	p.S71C	JRK_uc003ywp.2_Missense_Mutation_p.S71C|JRK_uc010mew.1_Missense_Mutation_p.S71C	NM_001077527	NP_001070995			jerky isoform b												0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;2.31e-05)				cgccttgttggagtccgagct	0		NA											4	19					0	0	0	0
TSTA3	7264	broad.mit.edu	37	8	144696589	144696589	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr8:144696589C>T	uc003yza.2	-	6	535	c.499G>A	c.(499-501)GCT>ACT	p.A167T	TSTA3_uc003yzb.2_Missense_Mutation_p.A167T	NM_003313	NP_003304	Q13630	FCL_HUMAN	tissue specific transplantation antigen P35B	167					'de novo' GDP-L-fucose biosynthetic process|leukocyte cell-cell adhesion		coenzyme binding|electron carrier activity|GDP-4-dehydro-D-rhamnose reductase activity|GDP-L-fucose synthase activity|isomerase activity			pancreas(1)	1	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.17e-38)|Epithelial(56;7.17e-37)|all cancers(56;2.46e-32)|Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)		NADH(DB00157)	GGGATGACAGCGGTGAAGGTG	0.662		NA											4	38					0	0	0	0
MPDZ	8777	broad.mit.edu	37	9	13168483	13168483	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:13168483C>A	uc010mia.1	-	21	3193	c.3136G>T	c.(3136-3138)GGC>TGC	p.G1046C	MPDZ_uc003zkz.3_5'UTR|MPDZ_uc010mhy.2_Missense_Mutation_p.G1046C|MPDZ_uc010mhz.2_Missense_Mutation_p.G1046C|MPDZ_uc011lmn.1_Missense_Mutation_p.G1046C|MPDZ_uc003zlb.3_Missense_Mutation_p.G1046C	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1046	PDZ 6.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GCAATCCGGCCATCTCGACTA	0.453		NA											113	129					1.22e-62	2.5e-62	1	0
LINGO2	158038	broad.mit.edu	37	9	27950478	27950478	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:27950478G>A	uc003zqu.1	-	2	386	c.192C>T	c.(190-192)CTC>CTT	p.L64L	LINGO2_uc010mjf.1_Silent_p.L64L|LINGO2_uc003zqv.1_Silent_p.L64L	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	64	LRR 1.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TGTTTTTACTGAGGTCCAAGA	0.458		NA											72	94					0	0	0	0
TAF1L	138474	broad.mit.edu	37	9	32631662	32631662	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:32631662C>T	uc003zrg.1	-	1	4006	c.3916G>A	c.(3916-3918)GTG>ATG	p.V1306M	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1306					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GAAGGTGGCACATTTGTTTGA	0.428		NA											91	134					0	0	0	0
TAF1L	138474	broad.mit.edu	37	9	32633519	32633519	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:32633519G>A	uc003zrg.1	-	1	2149	c.2059C>T	c.(2059-2061)CCT>TCT	p.P687S	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	687					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGATCCTGAGGTGTGCGCATA	0.433		NA											6	117					0	0	0	0
KIAA1539	80256	broad.mit.edu	37	9	35107755	35107755	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:35107755C>T	uc003zwl.2	-	3	842	c.517G>A	c.(517-519)GAG>AAG	p.E173K	KIAA1539_uc003zwm.2_Missense_Mutation_p.E173K|KIAA1539_uc003zwn.2_Intron|KIAA1539_uc003zwo.2_Missense_Mutation_p.E173K|KIAA1539_uc003zwp.1_Missense_Mutation_p.E173K|KIAA1539_uc010mkk.1_Intron	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	173						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CCTGGGGACTCCCCCAGGGAC	0.632		NA											15	109					0	0	0	0
SIT1	27240	broad.mit.edu	37	9	35650548	35650548	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:35650548A>T	uc003zxe.1	-	2	284	c.187T>A	c.(187-189)TTG>ATG	p.L63M	SIT1_uc003zxf.1_Intron	NM_014450	NP_055265	Q9Y3P8	SIT1_HUMAN	SHP2-interacting transmembrane adaptor protein	63	Cytoplasmic (Potential).				regulation of T cell activation|signal transduction	integral to plasma membrane	kinase binding|SH2 domain binding				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CACTGGGACAAGTGTGCAGCC	0.597		NA											58	69					0	0	0	0
PGM5	5239	broad.mit.edu	37	9	71002492	71002492	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:71002492G>C	uc004agr.2	+	4	914	c.685G>C	c.(685-687)GCA>CCA	p.A229P		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	229					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						TCGCATTGACGCAATGCACGG	0.468		NA											7	55					0	0	0	0
C9orf135	138255	broad.mit.edu	37	9	72435949	72435949	+	Splice_Site	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:72435949T>A	uc004ahl.2	+	1	217	c.152_splice	c.e1+2	p.W51_splice	C9orf135_uc011lrw.1_Splice_Site|C9orf135_uc010moq.2_Splice_Site|C9orf135_uc011lrx.1_Splice_Site|C9orf135_uc010mop.2_Splice_Site_p.W51_splice|uc004ahk.2_5'Flank	NM_001010940	NP_001010940	Q5VTT2	CI135_HUMAN	hypothetical protein LOC138255							integral to membrane				ovary(1)	1						GTATTCCTGGTGAGCGAAGTC	0.408		NA											10	39					0	0	0	0
TRPM3	80036	broad.mit.edu	37	9	73167807	73167807	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:73167807C>T	uc004aid.2	-	23	3735	c.3491G>A	c.(3490-3492)CGA>CAA	p.R1164Q	TRPM3_uc004ahu.2_Missense_Mutation_p.R1006Q|TRPM3_uc004ahv.2_Missense_Mutation_p.R966Q|TRPM3_uc004ahw.2_Missense_Mutation_p.R1036Q|TRPM3_uc004ahx.2_Missense_Mutation_p.R1023Q|TRPM3_uc004ahy.2_Missense_Mutation_p.R1026Q|TRPM3_uc004ahz.2_Missense_Mutation_p.R1013Q|TRPM3_uc004aia.2_Missense_Mutation_p.R1011Q|TRPM3_uc004aib.2_Missense_Mutation_p.R1001Q|TRPM3_uc004aic.2_Missense_Mutation_p.R1164Q	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1189	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						TTTCCTCCATCGGCAGCACAG	0.527		NA											24	222					0	0	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320154	79320154	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:79320154C>A	uc010mpk.2	-	8	7160	c.7036G>T	c.(7036-7038)GAA>TAA	p.E2346*	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2346					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CACGAGGCTTCAGATGAGCAG	0.473		NA											32	133					9.65e-13	1.9e-12	1	0
C9orf4	23732	broad.mit.edu	37	9	111903626	111903626	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:111903626G>A	uc004bdw.1	-	4	859	c.859C>T	c.(859-861)CAG>TAG	p.Q287*		NM_014334	NP_055149	Q9P0K9	CI004_HUMAN	hypothetical protein LOC23732	287						integral to membrane					0						AGCTTACCCTGAATGGCTGGA	0.433		NA											5	34					0	0	0	0
UGCG	7357	broad.mit.edu	37	9	114676936	114676936	+	Silent	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:114676936C>T	uc004bft.2	+	2	440	c.150C>T	c.(148-150)CTC>CTT	p.L50L		NM_003358	NP_003349	Q16739	CEGT_HUMAN	ceramide glucosyltransferase	50	Cytoplasmic (Potential).				epidermis development|glucosylceramide biosynthetic process	Golgi membrane|integral to membrane|membrane fraction	ceramide glucosyltransferase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.0433)	Miglustat(DB00419)	ATAGCAAGCTCCCAGGTGTCT	0.368		NA											13	52					0	0	0	0
ALAD	210	broad.mit.edu	37	9	116155760	116155760	+	Missense_Mutation	SNP	T	T	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:116155760T>C	uc011lxf.1	-	2	282	c.80A>G	c.(79-81)AAT>AGT	p.N27S	ALAD_uc011lxe.1_Missense_Mutation_p.N27S|ALAD_uc004bhl.3_Missense_Mutation_p.M1V	NM_000031	NP_000022	P13716	HEM2_HUMAN	delta-aminolevulinic acid dehydratase	27					heme biosynthetic process|protein homooligomerization	cytosol	identical protein binding|lead ion binding|porphobilinogen synthase activity|zinc ion binding				0					Aminolevulinic acid(DB00855)	GTTGGAGGCATTGAGGGTGGT	0.547		NA											11	39					0	0	0	0
DENND1A	57706	broad.mit.edu	37	9	126429310	126429310	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:126429310C>G	uc004bnz.1	-	8	735	c.502G>C	c.(502-504)GAG>CAG	p.E168Q	DENND1A_uc004bny.1_5'UTR|DENND1A_uc011lzm.1_Missense_Mutation_p.E136Q|DENND1A_uc004boa.1_Missense_Mutation_p.E168Q|DENND1A_uc004bob.1_Missense_Mutation_p.E138Q|DENND1A_uc004boc.2_Missense_Mutation_p.E136Q	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	168	DENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						CTTACATTCTCAGGTATGCTG	0.299		NA											5	31					0	0	0	0
SH2D3C	10044	broad.mit.edu	37	9	130511596	130511596	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:130511596C>A	uc004bsc.2	-	5	1175	c.1033G>T	c.(1033-1035)GTC>TTC	p.V345F	SH2D3C_uc010mxo.2_Missense_Mutation_p.V185F|SH2D3C_uc004bry.2_Missense_Mutation_p.V187F|SH2D3C_uc004brz.3_5'UTR|SH2D3C_uc011mak.1_5'UTR|SH2D3C_uc004bsa.2_Missense_Mutation_p.V188F|SH2D3C_uc004bsb.2_Missense_Mutation_p.V277F	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	345					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						GAGGGGCTGACGGGGCTAGCA	0.657		NA											12	51					0.000978159	0.00164478	1	0
AIF1L	83543	broad.mit.edu	37	9	133993218	133993218	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:133993218C>G	uc004cab.1	+	5	383	c.278C>G	c.(277-279)TCA>TGA	p.S93*	AIF1L_uc004cad.1_Nonsense_Mutation_p.S119*|AIF1L_uc004cae.1_Nonsense_Mutation_p.S93*|AIF1L_uc004cac.1_RNA|AIF1L_uc011mce.1_Nonsense_Mutation_p.S98*	NM_031426	NP_113614	Q9BQI0	AIF1L_HUMAN	ionized calcium binding adapter molecule 2	93	EF-hand 2; degenerate.					actin cytoskeleton|cytoplasm|focal adhesion|ruffle membrane	actin filament binding|calcium ion binding				0						AAGATGATCTCAGAGGTGACA	0.507		NA											8	69					0	0	0	0
BAT2L1	84726	broad.mit.edu	37	9	134308156	134308156	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:134308156A>T	uc004can.3	+	2	323	c.268A>T	c.(268-270)AAG>TAG	p.K90*	BAT2L1_uc004cam.1_Nonsense_Mutation_p.K90*	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	90							protein binding				0						ATGGGCAAACAAGCAGGATCA	0.577		NA											7	50					0	0	0	0
COL5A1	1289	broad.mit.edu	37	9	137716625	137716625	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:137716625A>T	uc004cfe.2	+	62	5260	c.4878A>T	c.(4876-4878)AAA>AAT	p.K1626N	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1626	Fibrillar collagen NC1.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGCAGATGAAACGGCCCCTGG	0.632		NA											10	31					0	0	0	0
ABCA2	20	broad.mit.edu	37	9	139913671	139913671	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:139913671C>T	uc011mem.1	-	10	1658	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	ABCA2_uc011mel.1_Missense_Mutation_p.E505K|ABCA2_uc004ckl.1_Missense_Mutation_p.E435K|ABCA2_uc004ckm.1_Missense_Mutation_p.E535K|ABCA2_uc004ckn.1_5'Flank|ABCA2_uc004cko.1_Missense_Mutation_p.E281K	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	504					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CTGCCCTGCTCCAGGAAGCTG	0.652		NA											6	31					0	0	0	0
WWC3	55841	broad.mit.edu	37	X	10106854	10106854	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:10106854T>A	uc004csx.3	+	21	3160	c.2962T>A	c.(2962-2964)TGC>AGC	p.C988S	WWC3_uc010nds.2_Missense_Mutation_p.C652S|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	988	Potential.									ovary(4)	4						TGAGGAGCTCTGCGCCCTCCG	0.677		NA											7	28					0	0	0	0
CLCN4	1183	broad.mit.edu	37	X	10176392	10176392	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:10176392C>G	uc004csy.3	+	9	1581	c.1151C>G	c.(1150-1152)GCC>GGC	p.A384G	CLCN4_uc011mid.1_Missense_Mutation_p.A290G	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	384	Helical; (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GCCATCATTGCCTACCCCAAT	0.577		NA											47	261					0	0	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736348	12736348	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:12736348G>A	uc004cuz.1	+	16	3909	c.3403G>A	c.(3403-3405)GAT>AAT	p.D1135N	FRMPD4_uc011mij.1_Missense_Mutation_p.D1127N	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1135					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AGGAGCTCCTGATGGAGAAAC	0.512		NA											34	273					0	0	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29686564	29686564	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:29686564C>T	uc004dby.2	+	6	1229	c.721C>T	c.(721-723)CCA>TCA	p.P241S		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	241	Extracellular (Potential).				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						GACTGATAAGCCACCCAAGCT	0.368		NA											4	32					0	0	0	0
DMD	1756	broad.mit.edu	37	X	31496268	31496268	+	Silent	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:31496268G>C	uc004dda.1	-	59	9136	c.8892C>G	c.(8890-8892)GGC>GGG	p.G2964G	DMD_uc004dcq.1_Silent_p.G235G|DMD_uc004dcr.1_Silent_p.G504G|DMD_uc004dcs.1_Silent_p.G504G|DMD_uc004dct.1_Silent_p.G504G|DMD_uc004dcu.1_Silent_p.G504G|DMD_uc004dcv.1_Silent_p.G504G|DMD_uc004dcw.2_Silent_p.G1620G|DMD_uc004dcx.2_Silent_p.G1623G|DMD_uc004dcz.2_Silent_p.G2841G|DMD_uc004dcy.1_Silent_p.G2960G|DMD_uc004ddb.1_Silent_p.G2956G	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2964	Spectrin 22.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGAGGAGATCGCCCACGGGCT	0.532		NA											4	28					0	0	0	0
DMD	1756	broad.mit.edu	37	X	31496480	31496480	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:31496480C>G	uc004dda.1	-	59	8924	c.8680G>C	c.(8680-8682)GAG>CAG	p.E2894Q	DMD_uc004dcq.1_Missense_Mutation_p.E165Q|DMD_uc004dcr.1_Missense_Mutation_p.E434Q|DMD_uc004dcs.1_Missense_Mutation_p.E434Q|DMD_uc004dct.1_Missense_Mutation_p.E434Q|DMD_uc004dcu.1_Missense_Mutation_p.E434Q|DMD_uc004dcv.1_Missense_Mutation_p.E434Q|DMD_uc004dcw.2_Missense_Mutation_p.E1550Q|DMD_uc004dcx.2_Missense_Mutation_p.E1553Q|DMD_uc004dcz.2_Missense_Mutation_p.E2771Q|DMD_uc004dcy.1_Missense_Mutation_p.E2890Q|DMD_uc004ddb.1_Missense_Mutation_p.E2886Q	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2894	Spectrin 20.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GCTCTCTCCTCAGGAGGCAGC	0.443		NA											17	83					0	0	0	0
ITIH5L	347365	broad.mit.edu	37	X	54823474	54823474	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:54823474G>A	uc004dtj.2	-	2	188	c.158C>T	c.(157-159)ACC>ATC	p.T53I		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	53	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						GGTGACCAAGGTGTGGGCATA	0.473		NA											11	34					0	0	0	0
SLC7A3	84889	broad.mit.edu	37	X	70146774	70146774	+	Silent	SNP	G	G	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:70146774G>A	uc004dyn.2	-	9	1562	c.1404C>T	c.(1402-1404)ATC>ATT	p.I468I	SLC7A3_uc004dyo.2_Silent_p.I468I	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	468	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GTGGAGTGGGGATGGAGTTGA	0.483		NA											6	51					0	0	0	0
KIAA2022	340533	broad.mit.edu	37	X	73964112	73964112	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:73964112C>T	uc004eby.2	-	3	897	c.280G>A	c.(280-282)GCT>ACT	p.A94T		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	94					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTCACAGAAGCACTATTAGCA	0.512		NA											21	101					0	0	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104984567	104984567	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:104984567G>C	uc004elz.1	+	8	1687	c.931G>C	c.(931-933)GAA>CAA	p.E311Q		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	311	Ig-like C2-type 3.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						TGGAGAAAAAGAAGTTGAATT	0.443		NA											12	61					0	0	0	0
TRPC5	7224	broad.mit.edu	37	X	111097124	111097124	+	Missense_Mutation	SNP	T	T	A			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:111097124T>A	uc004epl.1	-	4	2030	c.1111A>T	c.(1111-1113)ACA>TCA	p.T371S	TRPC5_uc004epm.1_Missense_Mutation_p.T371S	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	371	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TAGGATGCTGTGTGGCAGATA	0.498		NA											25	66					0	0	0	0
AMOT	154796	broad.mit.edu	37	X	112033890	112033890	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:112033890G>C	uc004epr.2	-	7	2047	c.2047C>G	c.(2047-2049)CAG>GAG	p.Q683E	AMOT_uc004eps.2_Missense_Mutation_p.Q274E	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	683	Potential.				actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						AAATATTTCTGCTCCCACTTT	0.493		NA											39	168					0	0	0	0
GABRQ	55879	broad.mit.edu	37	X	151820062	151820062	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:151820062C>G	uc004ffp.1	+	8	995	c.975C>G	c.(973-975)ATC>ATG	p.I325M		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	325						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCTGTATCAAGGCCATTG	0.448		NA											33	84					0	0	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900413	151900413	+	Missense_Mutation	SNP	A	A	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chrX:151900413A>T	uc010ntp.2	-	3	742	c.388T>A	c.(388-390)TTC>ATC	p.F130I	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.F130I|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	130	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCCTTTGTGAATGGCTCCCTG	0.498		NA											47	117					0	0	0	0
SSTR1	6751	broad.mit.edu	37	14	38679129	38679130	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr14:38679129_38679130insT	uc001wul.1	+	3	1152_1153	c.535_536insT	c.(535-537)CTGfs	p.L179fs	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	179	Helical; Name=4; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	GGTAGTAAACCTGGGCGTGTGG	0.644		NA											10	49	---	---	---	---	NA	NA	NA	NA
C17orf63	55731	broad.mit.edu	37	17	27085655	27085655	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr17:27085655delG	uc002hct.1	-	3	1589	c.1322delC	c.(1321-1323)CCAfs	p.P441fs	C17orf63_uc010wax.1_Frame_Shift_Del_p.P441fs|C17orf63_uc010way.1_Frame_Shift_Del_p.P441fs|C17orf63_uc002hcw.2_Frame_Shift_Del_p.P313fs	NM_018182	NP_060652	Q8WU58	CQ063_HUMAN	hypothetical protein LOC55731	441										ovary(1)	1	all_epithelial(6;5.06e-20)|Lung NSC(42;0.01)		Epithelial(11;3.38e-06)|all cancers(11;2.46e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.104)			GTAGGCCAATGGGGCTGCCAT	0.612		NA											11	30	---	---	---	---	NA	NA	NA	NA
ZNF431	170959	broad.mit.edu	37	19	21365549	21365549	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr19:21365549delC	uc002npp.2	+	5	590	c.443delC	c.(442-444)TCCfs	p.S148fs	ZNF431_uc010ecq.2_Frame_Shift_Del_p.S57fs|ZNF431_uc010ecr.2_Frame_Shift_Del_p.S149fs	NM_133473	NP_597730	Q8TF32	ZN431_HUMAN	zinc finger protein 431	148					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(2)	2						AGAAAAGGCTCCGCAAGTGTA	0.358		NA											9	55	---	---	---	---	NA	NA	NA	NA
XKR3	150165	broad.mit.edu	37	22	17288660	17288660	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr22:17288660delA	uc002zlv.2	-	2	402	c.304delT	c.(304-306)TGGfs	p.W102fs	XKR3_uc011agf.1_Frame_Shift_Del_p.W102fs	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	102	Helical; (Potential).					integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AGAATGTGCCAAAAAAGTAAT	0.333		NA											18	55	---	---	---	---	NA	NA	NA	NA
DNAH8	1769	broad.mit.edu	37	6	38834618	38834618	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr6:38834618delT	uc003ooe.1	+	45	6608	c.6008delT	c.(6007-6009)CTTfs	p.L2003fs		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTTTACGTTCTTTACAAACTC	0.303		NA											10	18	---	---	---	---	NA	NA	NA	NA
TLE1	7088	broad.mit.edu	37	9	84199390	84199390	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CR-7371-01A-11D-2012-08	TCGA-CR-7371-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	68201be8-a1a9-4c78-ad99-3c767ca8366b	a676c12d-d9aa-4f59-8d74-c0d2684b3631	g.chr9:84199390delC	uc004aly.2	-	19	2619	c.2178delG	c.(2176-2178)CGGfs	p.R726fs	TLE1_uc004alz.2_Frame_Shift_Del_p.R736fs|TLE1_uc011lsr.1_Frame_Shift_Del_p.R711fs	NM_005077	NP_005068	Q04724	TLE1_HUMAN	transducin-like enhancer protein 1	726	WD 5.				negative regulation of Wnt receptor signaling pathway|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway		transcription factor binding			ovary(1)|skin(1)	2						CATAGGGGGTCCGCCAAGCAT	0.453		NA											15	87	---	---	---	---	NA	NA	NA	NA
