Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
KIAA0090	23065	broad.mit.edu	37	1	19577911	19577911	+	Silent	SNP	A	A	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr1:19577911A>G	uc001bbo.2	-	1	136	c.93T>C	c.(91-93)GAT>GAC	p.D31D	KIAA0090_uc001bbp.2_Silent_p.D31D|KIAA0090_uc001bbq.2_Silent_p.D31D|KIAA0090_uc001bbr.2_Silent_p.D31D|MRTO4_uc001bbs.2_5'Flank	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	31	Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		GTACGCACCAATCAAACTTGC	0.493		NA											9	48					0	0	0	0
ZNF362	149076	broad.mit.edu	37	1	33745847	33745847	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr1:33745847G>A	uc001bxc.1	+	5	642	c.472G>A	c.(472-474)GCC>ACC	p.A158T		NM_152493	NP_689706	Q5T0B9	ZN362_HUMAN	zinc finger protein 362	158					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCGCCTCATCGCCTCGTCCCC	0.682		NA											8	124					0	0	0	0
DBT	1629	broad.mit.edu	37	1	100672165	100672165	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr1:100672165C>G	uc001dta.2	-	9	1078	c.1045G>C	c.(1045-1047)GAT>CAT	p.D349H	DBT_uc010oug.1_Missense_Mutation_p.D168H	NM_001918	NP_001909	P11182	ODB2_HUMAN	dihydrolipoamide branched chain transacylase	349					branched chain family amino acid catabolic process|fatty-acyl-CoA biosynthetic process	microtubule cytoskeleton|mitochondrial alpha-ketoglutarate dehydrogenase complex|mitochondrial nucleoid	acyltransferase activity|cofactor binding|dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity|protein binding			pancreas(1)	1		all_epithelial(167;5.4e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.0739)|all cancers(265;0.123)|COAD - Colon adenocarcinoma(174;0.154)|Lung(183;0.199)		TGCTCAGTATCCATTGCTATC	0.388		NA											33	252					0	0	0	0
PSMB4	5692	broad.mit.edu	37	1	151373293	151373293	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr1:151373293C>T	uc001eyc.1	+	4	571	c.548C>T	c.(547-549)GCC>GTC	p.A183V	PSMB4_uc010pda.1_3'UTR|PSMB4_uc001eyb.1_3'UTR	NM_002796	NP_002787	P28070	PSB4_HUMAN	proteasome beta 4 subunit	183					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2	Lung SC(34;0.00471)|Ovarian(49;0.00871)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CCTTCGCTGGCCACTGGTTAT	0.358		NA											35	302					0	0	0	0
NID1	4811	broad.mit.edu	37	1	236175241	236175241	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr1:236175241C>T	uc001hxo.2	-	12	2609	c.2507G>A	c.(2506-2508)GGC>GAC	p.G836D	NID1_uc009xgd.2_Intron|NID1_uc009xgc.2_5'UTR	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	836	EGF-like 5; calcium-binding (Potential).				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	GCAACGGAAGCCGTCTCCCTG	0.577		NA											8	89					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237961367	237961367	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr1:237961367C>T	uc001hyl.1	+	97	14107	c.13987C>T	c.(13987-13989)CGA>TGA	p.R4663*	RYR2_uc010pyb.1_Nonsense_Mutation_p.R96*	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4663					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GTTCTACGGCCGAGACAGAAT	0.408		NA											3	17					0	0	0	0
C1orf101	257044	broad.mit.edu	37	1	244735832	244735832	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr1:244735832C>G	uc001iam.2	+	11	1767	c.1708C>G	c.(1708-1710)CTG>GTG	p.L570V	C1orf101_uc001iak.1_Missense_Mutation_p.L124V|C1orf101_uc001ial.2_Missense_Mutation_p.L570V|C1orf101_uc010pym.1_Missense_Mutation_p.L419V|C1orf101_uc010pyn.1_Missense_Mutation_p.L503V	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	570	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			TCCCTTACATCTGGAAGCACA	0.363		NA											8	70					0	0	0	0
MYO3A	53904	broad.mit.edu	37	10	26463239	26463239	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr10:26463239C>A	uc001isn.2	+	30	4406	c.4046C>A	c.(4045-4047)GCA>GAA	p.A1349E	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1349	IQ 3.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GAAGATAAAGCAGCGGTATTC	0.488		NA											11	89					0.00829132	0.00858224	1	0
CSGALNACT2	55454	broad.mit.edu	37	10	43650731	43650731	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr10:43650731C>T	uc001jan.2	+	2	469	c.134C>T	c.(133-135)CCT>CTT	p.P45L	CSGALNACT2_uc001jam.1_Missense_Mutation_p.P45L	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	45	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						GCATCTCTTCCTGGTGTTGTT	0.463		NA											8	64					0	0	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648571	62648571	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr10:62648571G>A	uc001jli.2	-	7	1293	c.855C>T	c.(853-855)CTC>CTT	p.L285L	RHOBTB1_uc001jlh.2_Silent_p.L285L|RHOBTB1_uc001jlj.2_Silent_p.L285L|RHOBTB1_uc001jlk.2_Silent_p.L285L|RHOBTB1_uc009xpe.1_Silent_p.L223L|RHOBTB1_uc001jll.2_Silent_p.L35L	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	285	BTB 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					AAGAGGTAGCGAGGTAAATTC	0.438		NA											13	92					0	0	0	0
SEC23IP	11196	broad.mit.edu	37	10	121685734	121685734	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr10:121685734G>A	uc001leu.1	+	13	2380	c.2308G>A	c.(2308-2310)GGA>AGA	p.G770R	SEC23IP_uc010qtc.1_Missense_Mutation_p.G559R|SEC23IP_uc009xzk.1_RNA	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	770					Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding	p.G770R(1)		ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		AGTTGGCGCCGGACAGGTGAG	0.393		NA											19	137					0	0	0	0
HRAS	3265	broad.mit.edu	37	11	534289	534289	+	Missense_Mutation	SNP	C	C	T	rs104894229		TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr11:534289C>T	uc001lpv.2	-	2	222	c.34G>A	c.(34-36)GGC>AGC	p.G12S	HRAS_uc010qvw.1_Missense_Mutation_p.G12S|HRAS_uc010qvx.1_Missense_Mutation_p.G12S|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	12	GTP.		G -> S (in FCSS, OSCC and CMEMS).|G -> E (in FCSS).|G -> C (in FCSS).|G -> A (in FCSS).		activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.G12V(250)|p.G12S(54)|p.G12D(39)|p.G12C(23)|p.G12R(12)|p.G12A(7)|p.G12_G13insAG(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	CCCACACCGCCGGCGCCCACC	0.647		6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			56	46					0	0	0	0
DDB1	1642	broad.mit.edu	37	11	61089130	61089130	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr11:61089130G>A	uc001nrc.3	-	10	1388	c.1162C>T	c.(1162-1164)CGG>TGG	p.R388W	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R388W|DDB1_uc010rlg.1_RNA|DDB1_uc001nrd.2_Missense_Mutation_p.R388W|DDB1_uc009ynl.1_Missense_Mutation_p.R275W	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	388	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						CGGATGATCCGCAAAGAACCT	0.473		NA						NER					19	235					0	0	0	0
DDB1	1642	broad.mit.edu	37	11	61090509	61090509	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr11:61090509G>A	uc001nrc.3	-	8	1205	c.979C>T	c.(979-981)CGC>TGC	p.R327C	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R327C|DDB1_uc010rlg.1_RNA|DDB1_uc001nrd.2_Missense_Mutation_p.R327C|DDB1_uc009ynl.1_Missense_Mutation_p.R214C	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	327	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						TCACCCAGGCGAGACCCGACA	0.438		NA						NER					3	31					0	0	0	0
DDX10	1662	broad.mit.edu	37	11	108546344	108546344	+	Missense_Mutation	SNP	G	G	A	rs145766863	byFrequency	TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr11:108546344G>A	uc001pkm.2	+	3	334	c.269G>A	c.(268-270)CGT>CAT	p.R90H	DDX10_uc001pkl.1_Missense_Mutation_p.R90H	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	90	Q motif.|ATP.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		GCTCAGTACCGTTTGGTGACT	0.393		NA	T	NUP98	AML*								8	92					0	0	0	0
OR6M1	390261	broad.mit.edu	37	11	123676267	123676267	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr11:123676267G>A	uc010rzz.1	-	1	791	c.791C>T	c.(790-792)TCA>TTA	p.S264L		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		ATAATCCAGTGAGGAGTTCTG	0.488		NA											8	66					0	0	0	0
PRB3	5544	broad.mit.edu	37	12	11420574	11420574	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr12:11420574C>A	uc001qzs.2	-	3	647	c.609G>T	c.(607-609)AAG>AAT	p.K203N	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	203	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|8.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GTCCTTCTGGCTTTCCCGGAC	0.627		NA											10	272					1.4e-16	1.51e-16	1	0
PRB3	5544	broad.mit.edu	37	12	11420826	11420826	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr12:11420826C>A	uc001qzs.2	-	3	395	c.357G>T	c.(355-357)AAG>AAT	p.K119N	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	119	4.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.			K -> E (in Ref. 1; CAA30728).		extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GTCCTTCTGGCTTTCCCGGAC	0.632		NA											18	195					5.77e-19	6.24e-19	1	0
PUS7L	83448	broad.mit.edu	37	12	44148576	44148576	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr12:44148576G>A	uc001rnq.3	-	2	962	c.473C>T	c.(472-474)CCT>CTT	p.P158L	PUS7L_uc001rnr.3_Missense_Mutation_p.P158L|PUS7L_uc001rns.3_Missense_Mutation_p.P158L|PUS7L_uc009zkb.2_Intron	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	158					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		GAATTCAGGAGGTAGTCCAAT	0.368		NA											10	120					0	0	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57867414	57867414	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr12:57867414G>C	uc001sod.2	-	20	2459	c.2266C>G	c.(2266-2268)CTA>GTA	p.L756V	ARHGAP9_uc001sny.2_RNA|ARHGAP9_uc001snz.2_Missense_Mutation_p.L482V|ARHGAP9_uc001soa.2_Missense_Mutation_p.L355V|ARHGAP9_uc001sob.2_Intron|ARHGAP9_uc001soc.2_Missense_Mutation_p.L666V	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	685	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			AGGTACCGTAGAGTGTCATGG	0.507		NA											12	109					0	0	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57867440	57867440	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr12:57867440G>C	uc001sod.2	-	20	2433	c.2240C>G	c.(2239-2241)TCA>TGA	p.S747*	ARHGAP9_uc001sny.2_RNA|ARHGAP9_uc001snz.2_Nonsense_Mutation_p.S473*|ARHGAP9_uc001soa.2_Nonsense_Mutation_p.S346*|ARHGAP9_uc001sob.2_Intron|ARHGAP9_uc001soc.2_Nonsense_Mutation_p.S657*	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	676	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			CTTTGGCATTGAGCCTATTAA	0.488		NA											10	92					0	0	0	0
GNS	2799	broad.mit.edu	37	12	65130831	65130831	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr12:65130831G>A	uc001ssg.3	-	9	1221	c.1051C>T	c.(1051-1053)CCA>TCA	p.P351S	GNS_uc001ssf.2_Missense_Mutation_p.P295S|GNS_uc010ssq.1_Missense_Mutation_p.P383S|GNS_uc010ssr.1_Missense_Mutation_p.P331S	NM_002076	NP_002067	P15586	GNS_HUMAN	glucosamine (N-acetyl)-6-sulfatase precursor	351						lysosome	metal ion binding|N-acetylglucosamine-6-sulfatase activity|protein binding			central_nervous_system(1)	1	Lung NSC(1;7.25e-14)|all_lung(1;1.25e-12)		LUAD - Lung adenocarcinoma(6;0.115)	GBM - Glioblastoma multiforme(28;0.0435)		ACCAACAGTGGAACTTTGATA	0.458		NA											5	73					0	0	0	0
ATP11A	23250	broad.mit.edu	37	13	113508638	113508638	+	Silent	SNP	C	C	T	rs144429120		TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr13:113508638C>T	uc001vsi.3	+	19	2125	c.2037C>T	c.(2035-2037)GCC>GCT	p.A679A	ATP11A_uc001vsj.3_Silent_p.A679A|ATP11A_uc001vsm.1_Silent_p.A555A|ATP11A_uc010ago.2_RNA	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	679	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				TGCAGAAGGCCGGGATCAAAG	0.592		NA											5	57					0	0	0	0
FSIP1	161835	broad.mit.edu	37	15	40068654	40068654	+	Missense_Mutation	SNP	G	G	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr15:40068654G>T	uc001zki.2	-	2	290	c.72C>A	c.(70-72)AGC>AGA	p.S24R		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	24										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		TTGAACTTCTGCTCCCAGGGC	0.368		NA											10	146					4.69e-08	5.03e-08	1	0
B2M	567	broad.mit.edu	37	15	45003745	45003745	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr15:45003745A>G	uc001zuc.2	+	1	61	c.1A>G	c.(1-3)ATG>GTG	p.M1V	B2M_uc010uek.1_Missense_Mutation_p.M1V|B2M_uc010bdx.1_Missense_Mutation_p.M1V	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	1					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding	p.M1V(2)		ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		TCGGGCCGAGATGTCTCGCTC	0.612		NA											5	74					0	0	0	0
HERC1	8925	broad.mit.edu	37	15	63942010	63942010	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr15:63942010C>T	uc002amp.2	-	54	10809	c.10661G>A	c.(10660-10662)CGG>CAG	p.R3554Q		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3554	WD 6.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TCCATCCATCCGTCCCACCAA	0.512		NA											7	23					0	0	0	0
LBXCOR1	390598	broad.mit.edu	37	15	68118861	68118861	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr15:68118861C>T	uc002aqy.1	+	2	668	c.668C>T	c.(667-669)GCC>GTC	p.A223V		NM_001031807	NP_001026977	P84550	SKOR1_HUMAN	transcriptional corepressor Corl1	232					negative regulation of BMP signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|dendrite|neuronal cell body|nucleus	nucleotide binding|SMAD binding|transcription repressor activity				0						ACACCCGACGCCAAGTACACG	0.567		NA											7	57					0	0	0	0
CHD2	1106	broad.mit.edu	37	15	93518123	93518123	+	Silent	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr15:93518123C>A	uc002bsp.2	+	20	3095	c.2520C>A	c.(2518-2520)TCC>TCA	p.S840S	CHD2_uc002bso.1_Silent_p.S840S|CHD2_uc010bog.1_Silent_p.S85S|CHD2_uc010boh.1_Silent_p.S34S	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	840	Helicase C-terminal.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TGGATGGTTCCATCAAGGGAG	0.433		NA											11	62					0.000308642	0.000325176	1	0
RHBDL1	9028	broad.mit.edu	37	16	727018	727019	+	Missense_Mutation	DNP	GC	GC	AA			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr16:727018_727019GC>AA	uc002cis.1	+	3	696_697	c.669_670GC>AA	c.(667-672)CTGCAG>CTAAAG	p.Q224K	RHBDL1_uc002cir.1_Missense_Mutation_p.Q159K|RHBDL1_uc010uun.1_Missense_Mutation_p.Q159K	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	224					proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				AGTGGGTGCTGCAGACCTACCA	0.639		NA											8	63					0	0	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67318871	67318871	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr16:67318871C>A	uc002eso.3	+	12	4483	c.1948C>A	c.(1948-1950)CCA>ACA	p.P650T	PLEKHG4_uc002esp.3_Missense_Mutation_p.P457T|PLEKHG4_uc002esq.3_Missense_Mutation_p.P650T|PLEKHG4_uc010cef.2_Missense_Mutation_p.P650T|PLEKHG4_uc002ess.3_Missense_Mutation_p.P650T|PLEKHG4_uc010ceg.2_Missense_Mutation_p.P569T	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	650					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		ACTGAAGCTACCACCGGTGGG	0.667		NA											6	28					0.00198382	0.00207527	1	0
CTCF	10664	broad.mit.edu	37	16	67650717	67650717	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr16:67650717G>A	uc002etl.2	+	5	1312	c.1022G>A	c.(1021-1023)CGT>CAT	p.R341H	CTCF_uc010cek.2_Missense_Mutation_p.R13H	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	341	C2H2-type 3.				chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		GTTCGGCATCGTCGTTACAAA	0.488		NA											26	276					0	0	0	0
PRMT7	54496	broad.mit.edu	37	16	68382250	68382250	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr16:68382250C>G	uc002evy.1	+	14	1605	c.1329C>G	c.(1327-1329)TTC>TTG	p.F443L	PRMT7_uc002evx.1_Intron|PRMT7_uc010vlg.1_Missense_Mutation_p.F393L|PRMT7_uc002evz.1_Intron	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	443					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		CTAAGATCTTCAAGGCTAACC	0.373		NA											8	84					0	0	0	0
ZNF594	84622	broad.mit.edu	37	17	5085805	5085805	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr17:5085805G>C	uc010cla.1	-	2	1903	c.1747C>G	c.(1747-1749)CTC>GTC	p.L583V		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	583	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						TGTCTGATGAGGTCTGAGCTG	0.458		NA											17	198					0	0	0	0
MYH4	4622	broad.mit.edu	37	17	10354168	10354168	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr17:10354168G>A	uc002gmn.2	-	29	4021	c.3910C>T	c.(3910-3912)CAG>TAG	p.Q1304*	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1304	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CGGGATAGCTGAGAAACCATA	0.383		NA											20	110					0	0	0	0
STAT5B	6777	broad.mit.edu	37	17	40359614	40359614	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr17:40359614G>A	uc002hzh.2	-	16	2208	c.2039C>T	c.(2038-2040)TCC>TTC	p.S680F		NM_012448	NP_036580	P51692	STA5B_HUMAN	signal transducer and activator of transcription	680	SH2.				2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|JAK-STAT cascade involved in growth hormone signaling pathway|oxaloacetate metabolic process|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|glucocorticoid receptor binding|sequence-specific DNA binding transcription factor activity			ovary(3)|lung(2)|skin(1)	6		all_cancers(22;4.15e-07)|all_epithelial(22;2.83e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.135)	Dasatinib(DB01254)	GTAGTATTTGGAGTATACTTC	0.388		NA											18	145					0	0	0	0
EZH1	2145	broad.mit.edu	37	17	40854917	40854917	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr17:40854917C>T	uc002iaz.2	-	20	2306	c.2161G>A	c.(2161-2163)GAA>AAA	p.E721K	EZH1_uc002iba.2_Missense_Mutation_p.E712K|EZH1_uc010wgt.1_Missense_Mutation_p.E651K|EZH1_uc010wgu.1_Missense_Mutation_p.E727K|EZH1_uc010wgv.1_Missense_Mutation_p.E681K|EZH1_uc010wgw.1_Missense_Mutation_p.E582K	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	721	SET.			VVMVNGDHRIGIFAKRAIQAGEELFFDYRYSQADALKYVGI ERETDVL -> GESQ (in Ref. 2; BAA25019).	anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding	p.E721K(1)		ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		AAGAGCTCTTCGCCAGCTTGA	0.512		NA											20	196					0	0	0	0
OTOP2	92736	broad.mit.edu	37	17	72926892	72926892	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr17:72926892G>A	uc010wrp.1	+	7	1251	c.1162G>A	c.(1162-1164)GTG>ATG	p.V388M		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	388	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					CTACTCCATCGTGGCTGTGGT	0.617		NA											6	63					0	0	0	0
EPB41L3	23136	broad.mit.edu	37	18	5489117	5489117	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr18:5489117C>T	uc002kmt.1	-	2	152	c.66G>A	c.(64-66)GCG>GCA	p.A22A	EPB41L3_uc010wzh.1_Silent_p.A22A|EPB41L3_uc002kmu.1_Silent_p.A22A|EPB41L3_uc010dkq.1_5'UTR|EPB41L3_uc010dks.1_Silent_p.A44A|EPB41L3_uc002kmv.1_5'UTR	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	22					cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						gcgcccccgccgccTCCTGGG	0.512		NA											3	27					0	0	0	0
ANKRD12	23253	broad.mit.edu	37	18	9255584	9255584	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr18:9255584G>C	uc002knv.2	+	9	2576	c.2319G>C	c.(2317-2319)GAG>GAC	p.E773D	ANKRD12_uc002knw.2_Missense_Mutation_p.E750D|ANKRD12_uc002knx.2_Missense_Mutation_p.E750D|ANKRD12_uc010dkx.1_Missense_Mutation_p.E480D	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	773						nucleus				ovary(2)|central_nervous_system(1)	3						TAAAAGAAGAGAGAGAAAACA	0.348		NA											7	64					0	0	0	0
SMAD4	4089	broad.mit.edu	37	18	48573554	48573554	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr18:48573554G>A	uc010xdp.1	+	2	676	c.138G>A	c.(136-138)AAG>AAA	p.K46K	SMAD4_uc010xdo.1_RNA	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	46	MH1.				BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(5)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		TGGTAAAGAAGCTGAAGGAGA	0.368		NA							Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				7	86					0	0	0	0
DSEL	92126	broad.mit.edu	37	18	65178325	65178325	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr18:65178325A>G	uc002lke.1	-	2	4775	c.3551T>C	c.(3550-3552)ATA>ACA	p.I1184T		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	1174						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				AGTTGGTGATATTTCCCCTTC	0.363		NA											10	66					0	0	0	0
ZNF407	55628	broad.mit.edu	37	18	72344099	72344099	+	Missense_Mutation	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr18:72344099C>A	uc002llw.2	+	1	1181	c.1124C>A	c.(1123-1125)CCT>CAT	p.P375H	ZNF407_uc010xfc.1_Missense_Mutation_p.P375H|ZNF407_uc010dqu.1_Missense_Mutation_p.P375H|ZNF407_uc002llu.2_Missense_Mutation_p.P374H	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	375					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GCTCAGAATCCTGAAAACCAG	0.413		NA											6	82					0.000157383	0.000166409	1	0
ATCAY	85300	broad.mit.edu	37	19	3920766	3920766	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:3920766C>G	uc002lyy.3	+	12	1506	c.1076C>G	c.(1075-1077)TCT>TGT	p.S359C	ATCAY_uc010xhz.1_Missense_Mutation_p.S365C|ATCAY_uc010dts.2_Missense_Mutation_p.S116C	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	359					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		CTCCACAGGTCTGCTCTGGTC	0.378		NA											4	34					0	0	0	0
PLIN3	10226	broad.mit.edu	37	19	4847853	4847853	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:4847853C>T	uc002mbj.2	-	6	861	c.684G>A	c.(682-684)CAG>CAA	p.Q228Q	PLIN3_uc002mbk.2_Silent_p.Q216Q|PLIN3_uc002mbl.3_Silent_p.Q228Q	NM_005817	NP_005808	O60664	PLIN3_HUMAN	mannose 6 phosphate receptor binding protein 1	228					vesicle-mediated transport	endosome membrane|Golgi apparatus|lipid particle	protein binding				0					Galsulfase(DB01279)|Idursulfase(DB01271)	CCTGCCGCTGCTGCTGCACGG	0.617		NA											3	23					0	0	0	0
HNRNPM	4670	broad.mit.edu	37	19	8551952	8551952	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:8551952C>T	uc010dwe.2	+	15	2102	c.2022C>T	c.(2020-2022)AAC>AAT	p.N674N	HNRNPM_uc010dwd.2_Silent_p.N635N|HNRNPM_uc002mka.2_Silent_p.N539N|HNRNPM_uc002mkb.1_5'Flank	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	674	RRM 3.				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						ACAAATTCAACGAGTGCGGTA	0.517		NA											18	142					0	0	0	0
CACNA1A	773	broad.mit.edu	37	19	13414687	13414687	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:13414687G>A	uc010dze.2	-	16	2237	c.2001C>T	c.(1999-2001)GGC>GGT	p.G667G	CACNA1A_uc010dzc.2_Silent_p.G192G|CACNA1A_uc002mwy.3_Silent_p.G666G|CACNA1A_uc010xne.1_Silent_p.G192G	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	667	Extracellular (Potential).|II.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCCAGTCTTCGCCCGTCAGGA	0.592		NA											18	159					0	0	0	0
ZNF302	55900	broad.mit.edu	37	19	35173684	35173684	+	Silent	SNP	G	G	A	rs149807567	by1000genomes	TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:35173684G>A	uc002nvr.1	+	4	407	c.144G>A	c.(142-144)GTG>GTA	p.V48V	ZNF302_uc010xrz.1_Silent_p.V4V|ZNF302_uc002nvp.1_Silent_p.V4V|ZNF302_uc002nvq.1_Silent_p.V4V|ZNF302_uc002nvs.1_Silent_p.V4V	NM_018443	NP_060913	Q9NR11	ZN302_HUMAN	zinc finger protein 302	Error:Variant_position_missing_in_Q9NR11_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;6.16e-07)|Lung NSC(56;9.71e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TATTTCAGGTGACATTTAGTG	0.433		NA											7	64					0	0	0	0
TRAPPC6A	79090	broad.mit.edu	37	19	45681407	45681407	+	Missense_Mutation	SNP	C	C	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:45681407C>G	uc002paw.2	-	1	89	c.70G>C	c.(70-72)GAC>CAC	p.D24H	TRAPPC6A_uc002pav.2_Missense_Mutation_p.D24H|BLOC1S3_uc002pax.3_5'Flank			O75865	TPC6A_HUMAN	SubName: Full=TRAPPC6Adelta29-42; SubName: Full=Trafficking protein particle complex 6A, isoform CRA_a;	24					vesicle-mediated transport	endoplasmic reticulum|Golgi apparatus	guanylate cyclase activity|heme binding				0		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00872)|GBM - Glioblastoma multiforme(486;0.233)		GGGCCGGGGTCGGGGTCGTGA	0.627		NA											5	43					0	0	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52715983	52715983	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:52715983G>A	uc002pyp.2	+	5	707	c.548G>A	c.(547-549)CGG>CAG	p.R183Q	PPP2R1A_uc010ydk.1_Missense_Mutation_p.R128Q|PPP2R1A_uc010epm.1_Missense_Mutation_p.R223Q|PPP2R1A_uc002pyq.2_Missense_Mutation_p.R4Q	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	183	PP2A subunit B binding.|SV40 small T antigen binding.|HEAT 5.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity	p.R183W(16)|p.R183Q(7)|p.R183G(2)		endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		ATGGTGCGGCGGGCCGCAGCC	0.562		NA	Mis		clear cell ovarian carcinoma								15	66					0	0	0	0
NLRP5	126206	broad.mit.edu	37	19	56539838	56539838	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr19:56539838G>C	uc002qmj.2	+	7	2239	c.2239G>C	c.(2239-2241)GAT>CAT	p.D747H	NLRP5_uc002qmi.2_Missense_Mutation_p.D728H	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	747	LRR 2.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTTCCCAAGAGATGAGTCCGC	0.517		NA											20	209					0	0	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43984289	43984289	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr2:43984289C>T	uc010yny.1	+	26	3910	c.3827C>T	c.(3826-3828)TCA>TTA	p.S1276L		NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1276	FERM.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AGACCTTTCTCAACTCCAGCA	0.333		NA											6	84					0	0	0	0
TMEM37	140738	broad.mit.edu	37	2	120194495	120194495	+	Missense_Mutation	SNP	C	C	T	rs141678483		TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr2:120194495C>T	uc002tly.2	+	2	86	c.52C>T	c.(52-54)CGC>TGC	p.R18C		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	18						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						AAGGCAGCCCCGCCGGTCCTT	0.612		NA											12	73					0	0	0	0
MYO7B	4648	broad.mit.edu	37	2	128389183	128389183	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr2:128389183C>T	uc002top.2	+	37	5079	c.5026C>T	c.(5026-5028)CGG>TGG	p.R1676W	MYO7B_uc002tos.1_5'Flank|MYO7B_uc002tot.2_5'Flank	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1676	MyTH4 2.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		ACCCATCCTCCGGTACATGGG	0.677		NA											7	34					0	0	0	0
PKP4	8502	broad.mit.edu	37	2	159535144	159535144	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr2:159535144G>C	uc002tzv.2	+	21	3568	c.3308G>C	c.(3307-3309)AGA>ACA	p.R1103T	PKP4_uc002tzw.2_Missense_Mutation_p.R1060T|PKP4_uc002tzx.2_Missense_Mutation_p.R760T|PKP4_uc002uaa.2_Missense_Mutation_p.R912T|uc002uab.1_Intron|PKP4_uc002uac.2_Missense_Mutation_p.R284T|PKP4_uc002uad.2_RNA	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	1103					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						TCACCAGCAAGAGAACAAAAT	0.383		NA								HNSCC(62;0.18)			18	71					0	0	0	0
CASP8	841	broad.mit.edu	37	2	202149644	202149644	+	Missense_Mutation	SNP	A	A	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr2:202149644A>G	uc002uxr.1	+	9	1117	c.908A>G	c.(907-909)GAC>GGC	p.D303G	CASP8_uc002uxp.1_Missense_Mutation_p.D320G|CASP8_uc002uxq.1_Missense_Mutation_p.D288G|CASP8_uc002uxt.1_Missense_Mutation_p.D362G|CASP8_uc002uxu.1_RNA|CASP8_uc002uxw.1_Missense_Mutation_p.D288G|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Missense_Mutation_p.D219G	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor	303					activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						CAACTCATGGACCACAGTAAC	0.473		NA								HNSCC(4;0.00038)			30	136					0	0	0	0
AGAP1	116987	broad.mit.edu	37	2	237032621	237032621	+	Missense_Mutation	SNP	G	G	A	rs150891900		TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr2:237032621G>A	uc002vvs.2	+	18	3024	c.2429G>A	c.(2428-2430)CGG>CAG	p.R810Q	AGAP1_uc002vvt.2_Missense_Mutation_p.R757Q	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	810	ANK 2.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						GCCTACGCCCGGCAGGCCTCC	0.637		NA											6	71					0	0	0	0
C20orf94	128710	broad.mit.edu	37	20	10604013	10604013	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr20:10604013G>A	uc010zre.1	+	8	1393	c.1213G>A	c.(1213-1215)GAA>AAA	p.E405K		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	405							protein binding				0						AAAGAAATACGAAAGAGGCCA	0.448		NA											6	63					0	0	0	0
SEC23B	10483	broad.mit.edu	37	20	18491571	18491571	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr20:18491571C>T	uc002wqz.1	+	2	535	c.92C>T	c.(91-93)GCT>GTT	p.A31V	SEC23B_uc002wra.1_Missense_Mutation_p.A31V|SEC23B_uc002wrb.1_Missense_Mutation_p.A31V|SEC23B_uc010zsb.1_Missense_Mutation_p.A31V|SEC23B_uc002wrc.1_Missense_Mutation_p.A31V	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	31					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						CGGCTGGAGGCTACAAGAATG	0.502		NA											8	103					0	0	0	0
ATP9A	10079	broad.mit.edu	37	20	50255990	50255990	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr20:50255990G>C	uc002xwg.1	-	15	1560	c.1560C>G	c.(1558-1560)GAC>GAG	p.D520E	ATP9A_uc010gih.1_Missense_Mutation_p.D384E|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	520	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						TGGAAGACTGGTCTCGGCCCA	0.542		NA									OREG0026043	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	89					0	0	0	0
MOV10L1	54456	broad.mit.edu	37	22	50580618	50580618	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr22:50580618G>A	uc003bjj.2	+	16	2262	c.2179G>A	c.(2179-2181)GTA>ATA	p.V727I	MOV10L1_uc003bjk.3_Missense_Mutation_p.V727I|MOV10L1_uc011arp.1_Missense_Mutation_p.V707I|MOV10L1_uc011arq.1_Missense_Mutation_p.V488I|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	727					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		GAGCGATTGGGGTATGTGCTC	0.547		NA									OREG0026672	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	36					0	0	0	0
TRIM71	131405	broad.mit.edu	37	3	32933083	32933083	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr3:32933083G>A	uc003cff.2	+	4	2450	c.2387G>A	c.(2386-2388)CGC>CAC	p.R796H		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	796	NHL 5.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						CAGTTCCTGCGCCCACAAGGG	0.592		NA											9	74					0	0	0	0
FAM107A	11170	broad.mit.edu	37	3	58555543	58555543	+	Silent	SNP	C	C	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr3:58555543C>G	uc003dkm.2	-	3	604	c.45G>C	c.(43-45)CTG>CTC	p.L15L	FAM107A_uc003dko.2_Silent_p.L46L|FAM107A_uc003dkn.2_Silent_p.L15L|FAM107A_uc010hnm.2_Silent_p.L43L|FAM107A_uc003dkp.1_Silent_p.L15L	NM_007177	NP_009108	O95990	F107A_HUMAN	downregulated in renal cell carcinoma	15			L -> M (in ovarian cancer and renal cell carcinoma cell lines).		regulation of cell growth	nucleus	protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000189)|Kidney(10;0.000536)|KIRC - Kidney renal clear cell carcinoma(10;0.000716)|OV - Ovarian serous cystadenocarcinoma(275;0.154)		GCCGGGCCATCAGGCCCCCAA	0.597		NA											12	95					0	0	0	0
PVRL3	25945	broad.mit.edu	37	3	110852576	110852576	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr3:110852576C>T	uc003dxt.1	+	6	1164	c.1164C>T	c.(1162-1164)CCC>CCT	p.P388P	PVRL3_uc003dxu.1_Intron	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	388	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						AAAAATTGCCCTTCCCATTGT	0.443		NA											5	111					0	0	0	0
MFN1	55669	broad.mit.edu	37	3	179076745	179076745	+	Missense_Mutation	SNP	A	A	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr3:179076745A>C	uc003fjs.2	+	4	492	c.366A>C	c.(364-366)AAA>AAC	p.K122N	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.K150N	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	122	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			ATGGAGATAAAGCCTATCTTA	0.373		NA											10	79					0	0	0	0
HGFAC	3083	broad.mit.edu	37	4	3445789	3445789	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr4:3445789G>A	uc003ghc.2	+	5	502	c.499G>A	c.(499-501)GGC>AGC	p.G167S	HGFAC_uc010icw.2_Missense_Mutation_p.G167S	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	167	EGF-like 1.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CTGTGCCTCCGGCCCCTGCCT	0.662		NA											9	59					0	0	0	0
SORCS2	57537	broad.mit.edu	37	4	7726911	7726911	+	Missense_Mutation	SNP	T	T	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr4:7726911T>C	uc003gkb.3	+	20	2642	c.2642T>C	c.(2641-2643)GTT>GCT	p.V881A	SORCS2_uc011bwi.1_Missense_Mutation_p.V709A	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	881	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						CTGGAGGTGGTTCCTGTCATT	0.577		NA											18	61					0	0	0	0
SCLT1	132320	broad.mit.edu	37	4	129864211	129864211	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr4:129864211C>T	uc003igp.2	-	17	2078	c.1572G>A	c.(1570-1572)CGG>CGA	p.R524R	SCLT1_uc003ign.2_Silent_p.R188R|SCLT1_uc003igo.2_Silent_p.R134R|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	524	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						CAGTCTCTTTCCGTAACTGTT	0.363		NA											8	92					0	0	0	0
SCLT1	132320	broad.mit.edu	37	4	129873944	129873944	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr4:129873944C>A	uc003igp.2	-	14	1704	c.1198G>T	c.(1198-1200)GAA>TAA	p.E400*	SCLT1_uc003ign.2_Nonsense_Mutation_p.E64*|SCLT1_uc003igo.2_5'UTR|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	400	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						GCTGAAAGTTCTTCTGTTAAT	0.269		NA											8	90					0.000157383	0.000166409	1	0
ZNF827	152485	broad.mit.edu	37	4	146767142	146767142	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr4:146767142G>A	uc003ikn.2	-	7	2293	c.2245C>T	c.(2245-2247)CAT>TAT	p.H749Y	ZNF827_uc003ikm.2_Missense_Mutation_p.H749Y|ZNF827_uc010iox.2_Missense_Mutation_p.H399Y	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	749					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TCTTTTGTATGATTGTGCTCT	0.463		NA											4	48					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187541184	187541184	+	Missense_Mutation	SNP	A	A	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr4:187541184A>C	uc003izf.2	-	10	6744	c.6556T>G	c.(6556-6558)TTC>GTC	p.F2186V		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2186	Extracellular (Potential).|Cadherin 20.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GCACTGTAGAAAGGTTTTTCA	0.507		NA								HNSCC(5;0.00058)			6	75					0	0	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33624346	33624346	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:33624346C>T	uc003jia.1	-	14	2296	c.2133G>A	c.(2131-2133)AAG>AAA	p.K711K	ADAMTS12_uc010iuq.1_Intron	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	711	Spacer 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CAGATCCTTCCTTCTGCTTAA	0.453		NA								HNSCC(64;0.19)			6	104					0	0	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41008749	41008749	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:41008749C>T	uc003jmj.3	-	33	4057	c.3567G>A	c.(3565-3567)GTG>GTA	p.V1189V	HEATR7B2_uc003jmi.3_Silent_p.V744V	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1189	HEAT 13.						binding			ovary(6)|central_nervous_system(2)	8						CCTGCTGCATCACATGCCGCC	0.567		NA											5	39					0	0	0	0
DDX4	54514	broad.mit.edu	37	5	55082475	55082475	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:55082475G>A	uc003jqg.3	+	14	1068	c.994G>A	c.(994-996)GCT>ACT	p.A332T	DDX4_uc010ivz.2_Missense_Mutation_p.A312T|DDX4_uc003jqh.3_Missense_Mutation_p.A298T|DDX4_uc003jqj.2_Missense_Mutation_p.A183T	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	332	ATP (By similarity).|Helicase ATP-binding.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				GATGGCTTGCGCTCAAACAGG	0.398		NA											8	136					0	0	0	0
CMYA5	202333	broad.mit.edu	37	5	79030604	79030604	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:79030604G>C	uc003kgc.2	+	2	6088	c.6016G>C	c.(6016-6018)GAG>CAG	p.E2006Q		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2006						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAACATAGCAGAGGGGAAGGA	0.408		NA											5	45					0	0	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140799485	140799485	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:140799485G>A	uc003lkn.1	+	1	2204	c.2059G>A	c.(2059-2061)GAG>AAG	p.E687K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.E687K|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	687	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCCAGGCTGAGATGCAGTT	0.552		NA											8	72					0	0	0	0
ODZ2	57451	broad.mit.edu	37	5	167689098	167689098	+	Silent	SNP	C	C	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:167689098C>G	uc010jjd.2	+	29	7581	c.7581C>G	c.(7579-7581)GCC>GCG	p.A2527A	ODZ2_uc003lzr.3_Silent_p.A2297A|ODZ2_uc003lzt.3_Silent_p.A1900A|ODZ2_uc010jje.2_Silent_p.A1791A	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		ATAACCAGGCCTTCATGGCTC	0.507		NA											6	42					0	0	0	0
DOCK2	1794	broad.mit.edu	37	5	169477279	169477279	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:169477279G>A	uc003maf.2	+	41	4171	c.4091G>A	c.(4090-4092)CGC>CAC	p.R1364H	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.R856H	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1364	DHR-2.|Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTCATCTACCGCGGGAAGGAA	0.502		NA											19	175					0	0	0	0
HK3	3101	broad.mit.edu	37	5	176314244	176314244	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr5:176314244G>C	uc003mfa.2	-	12	1787	c.1695C>G	c.(1693-1695)ATC>ATG	p.I565M	HK3_uc003mez.2_Missense_Mutation_p.I121M	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	565	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAATGGAGTAGATCTCGCTGG	0.622		NA											11	55					0	0	0	0
GPR116	221395	broad.mit.edu	37	6	46847692	46847692	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr6:46847692G>A	uc003oyo.3	-	9	1188	c.899C>T	c.(898-900)TCC>TTC	p.S300F	GPR116_uc003oyp.3_Intron|GPR116_uc003oyq.3_Missense_Mutation_p.S300F|GPR116_uc010jzi.1_5'UTR|GPR116_uc003oyr.2_Missense_Mutation_p.S300F	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	300	Ig-like 1.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AGACACATTGGAGGACAAAAC	0.438		NA											9	80					0	0	0	0
CCDC28A	25901	broad.mit.edu	37	6	139101031	139101031	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr6:139101031C>T	uc003qie.2	+	3	656	c.501C>T	c.(499-501)TCC>TCT	p.S167S		NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	167											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		TCCAGCACTCCTTCCTCACTG	0.453		NA											10	82					0	0	0	0
SEMA3E	9723	broad.mit.edu	37	7	83014672	83014672	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr7:83014672G>A	uc003uhy.1	-	16	2279	c.1813C>T	c.(1813-1815)CGA>TGA	p.R605*		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	605	Ig-like C2-type.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TGTAAAGATCGTGGGGTACAT	0.398		NA											20	132					0	0	0	0
COL1A2	1278	broad.mit.edu	37	7	94051241	94051241	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr7:94051241C>T	uc003ung.1	+	39	2851	c.2380C>T	c.(2380-2382)CGG>TGG	p.R794W	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	794			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TGCTGCTGGACGGACTGGTCC	0.458		NA								HNSCC(75;0.22)			6	57					0	0	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99117510	99117510	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr7:99117510C>A	uc003uqv.2	+	4	738	c.614C>A	c.(613-615)TCA>TAA	p.S205*	ZKSCAN5_uc010lfx.2_Nonsense_Mutation_p.S205*|ZKSCAN5_uc003uqw.2_Nonsense_Mutation_p.S205*|ZKSCAN5_uc003uqx.2_Intron|ZKSCAN5_uc003uqy.2_5'UTR	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	205					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					CTGACAGCTTCACTTCTCTCA	0.517		NA											11	69					2.27e-07	2.43e-07	1	0
IQUB	154865	broad.mit.edu	37	7	123142651	123142651	+	Silent	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr7:123142651C>T	uc003vkn.2	-	6	1600	c.1023G>A	c.(1021-1023)GCG>GCA	p.A341A	IQUB_uc003vko.2_Silent_p.A341A|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Silent_p.A341A|IQUB_uc003vkq.2_3'UTR	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	341	IQ.									ovary(3)|large_intestine(1)	4						GTTATCTCACCGCCTTTAGTC	0.358		NA											6	71					0	0	0	0
XPO7	23039	broad.mit.edu	37	8	21843104	21843104	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr8:21843104G>A	uc003xaa.3	+	13	1581	c.1479G>A	c.(1477-1479)CTG>CTA	p.L493L	XPO7_uc010lti.2_Silent_p.L502L|XPO7_uc010ltk.2_Silent_p.L494L	NM_015024	NP_055839	Q9UIA9	XPO7_HUMAN	exportin 7 isoform b	493					mRNA transport|protein export from nucleus|transmembrane transport	cytoplasm|nuclear pore	nuclear export signal receptor activity|protein transporter activity			ovary(1)|kidney(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5				Colorectal(74;0.0187)|COAD - Colon adenocarcinoma(73;0.0724)		CAGGAAGGCTGACATGGCTGG	0.498		NA											40	139					0	0	0	0
UBR5	51366	broad.mit.edu	37	8	103305835	103305835	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr8:103305835G>A	uc003ykr.1	-	34	4620	c.4587C>T	c.(4585-4587)AGC>AGT	p.S1529S	UBR5_uc003yks.1_Silent_p.S1529S	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1529	Poly-Ser.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			CAATTTACCTGCTAGACTGAT	0.433		NA											11	99					0	0	0	0
TRAPPC9	83696	broad.mit.edu	37	8	140744267	140744267	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr8:140744267G>A	uc003yvj.2	-	22	3368	c.3234C>T	c.(3232-3234)CAC>CAT	p.H1078H	TRAPPC9_uc003yvh.2_Silent_p.H1176H	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	1078					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						AGACGGTGTCGTGCAGGTCGT	0.657		NA											5	11					0	0	0	0
EPPK1	83481	broad.mit.edu	37	8	144940690	144940690	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr8:144940690G>A	uc003zaa.1	-	2	14755	c.14742C>T	c.(14740-14742)AGC>AGT	p.S4914S		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4914	Plectin 61.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTGGTAGATGCTCATCTTCT	0.711		NA											7	102					0	0	0	0
KIAA1797	54914	broad.mit.edu	37	9	20789459	20789459	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:20789459C>T	uc003zog.1	+	13	1670	c.1307C>T	c.(1306-1308)GCT>GTT	p.A436V		NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	436						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		GACTGGTTGGCTTCAGTAGAG	0.463		NA											11	84					0	0	0	0
IGFBPL1	347252	broad.mit.edu	37	9	38414183	38414183	+	Missense_Mutation	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:38414183G>A	uc004aba.2	-	2	501	c.478C>T	c.(478-480)CCT>TCT	p.P160S		NM_001007563	NP_001007564	Q8WX77	IBPL1_HUMAN	insulin-like growth factor binding protein-like	160	Ig-like C2-type.				regulation of cell growth	extracellular region	insulin-like growth factor binding				0				GBM - Glioblastoma multiforme(29;0.0437)|Lung(182;0.116)		CTTCGGGGAGGAACGACGACC	0.592		NA											6	83					0	0	0	0
PRUNE2	158471	broad.mit.edu	37	9	79465512	79465512	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:79465512C>T	uc010mpk.2	-	3	335	c.211G>A	c.(211-213)GAG>AAG	p.E71K	PRUNE2_uc004akn.2_Missense_Mutation_p.E71K	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	71					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AACCTCGTCTCGGTGAAGTAG	0.393		NA											16	151					0	0	0	0
DAPK1	1612	broad.mit.edu	37	9	90321943	90321943	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:90321943G>A	uc004apc.2	+	26	4095	c.3957G>A	c.(3955-3957)CCG>CCA	p.P1319P	DAPK1_uc004apd.2_Silent_p.P1319P|DAPK1_uc011ltg.1_Silent_p.P1253P|DAPK1_uc011lth.1_Silent_p.P1056P|DAPK1_uc004apg.2_Silent_p.P296P	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	1319	Death.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						TGCTGGACCCGCCCGACCCCC	0.602		NA							Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				9	106					0	0	0	0
CENPP	401541	broad.mit.edu	37	9	95094556	95094556	+	Missense_Mutation	SNP	G	G	C			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:95094556G>C	uc004arz.2	+	2	752	c.212G>C	c.(211-213)AGT>ACT	p.S71T	CENPP_uc010mqx.2_Intron|CENPP_uc004ary.1_Missense_Mutation_p.S71T	NM_001012267	NP_001012267	Q6IPU0	CENPP_HUMAN	centromere protein P	71	Potential.				CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	chromosome, centromeric region|cytosol|nucleoplasm				ovary(2)	2						TCATTTCTAAGTACGCTTACT	0.348		NA											4	31					0	0	0	0
TMOD1	7111	broad.mit.edu	37	9	100331211	100331211	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:100331211G>A	uc004axk.1	+	8	975	c.762G>A	c.(760-762)TTG>TTA	p.L254L	TMOD1_uc004axl.1_Silent_p.L254L	NM_003275	NP_003266	P28289	TMOD1_HUMAN	tropomodulin 1	254					muscle filament sliding	cytosol	actin binding				0		Acute lymphoblastic leukemia(62;0.154)		STAD - Stomach adenocarcinoma(157;0.105)		ACAAGGTGTTGAAGACACTGA	0.507		NA											13	107					0	0	0	0
TMOD1	7111	broad.mit.edu	37	9	100331220	100331220	+	Silent	SNP	G	G	A			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:100331220G>A	uc004axk.1	+	8	984	c.771G>A	c.(769-771)CTG>CTA	p.L257L	TMOD1_uc004axl.1_Silent_p.L257L	NM_003275	NP_003266	P28289	TMOD1_HUMAN	tropomodulin 1	257					muscle filament sliding	cytosol	actin binding				0		Acute lymphoblastic leukemia(62;0.154)		STAD - Stomach adenocarcinoma(157;0.105)		TGAAGACACTGAATGTGGAAT	0.498		NA											15	102					0	0	0	0
GALNT12	79695	broad.mit.edu	37	9	101585618	101585618	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:101585618C>T	uc004ayz.2	+	2	452	c.452C>T	c.(451-453)ACT>ATT	p.T151I		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	151	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				GCCTGGTCAACTCTCCTTCGG	0.428		NA											5	84					0	0	0	0
FNBP1	23048	broad.mit.edu	37	9	132740854	132740854	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:132740854C>T	uc004byw.1	-	4	454	c.235G>A	c.(235-237)GAA>AAA	p.E79K	FNBP1_uc011mbv.1_Missense_Mutation_p.E79K|FNBP1_uc011mbw.1_Missense_Mutation_p.E79K|FNBP1_uc004bza.2_Missense_Mutation_p.E79K|FNBP1_uc004byz.1_Missense_Mutation_p.E79K|FNBP1_uc004byx.1_5'UTR|FNBP1_uc004byy.1_5'UTR	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	79	Interaction with microtubules (By similarity).|Required for self-association and induction of membrane tubulation.|Self-association, lipid-binding and induction of membrane tubulation.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		TCATTCATTTCGTTCAGGTTG	0.433		NA	T	MLL	AML								7	50					0	0	0	0
CACNA1B	774	broad.mit.edu	37	9	141016410	141016410	+	Missense_Mutation	SNP	C	C	T			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:141016410C>T	uc004cog.2	+	46	7124	c.6979C>T	c.(6979-6981)CGG>TGG	p.R2327W	CACNA1B_uc004coi.2_Missense_Mutation_p.R1539W	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2327	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TGGCCGAGCACGGCACAGCTA	0.637		NA											9	39					0	0	0	0
PTPRN2	5799	broad.mit.edu	37	7	158380276	158380277	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr7:158380276_158380277insG	uc003wno.2	-	1	206_207	c.85_86insC	c.(85-87)CGCfs	p.R29fs	PTPRN2_uc003wnp.2_Frame_Shift_Ins_p.R29fs|PTPRN2_uc003wnq.2_Frame_Shift_Ins_p.R29fs|PTPRN2_uc003wnr.2_Frame_Shift_Ins_p.R29fs	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	29	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTGCCGGCCGCGGGGGACGGAC	0.594		NA											2	4	---	---	---	---	NA	NA	NA	NA
SURF2	6835	broad.mit.edu	37	9	136226880	136226882	+	In_Frame_Del	DEL	GGA	GGA	-	rs149969130		TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chr9:136226880_136226882delGGA	uc004cdi.2	+	4	440_442	c.392_394delGGA	c.(391-396)CGGAGG>CGG	p.131_132RR>R		NM_017503	NP_059973	Q15527	SURF2_HUMAN	surfeit 2	131_132							protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.87e-07)|Epithelial(140;4.02e-06)|all cancers(34;3.71e-05)		CTGGTGCACCGGAGGAGGAGGAG	0.635		NA											7	35	---	---	---	---	NA	NA	NA	NA
RBM10	8241	broad.mit.edu	37	X	47030561	47030563	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-CR-7382-01A-11D-2129-08	TCGA-CR-7382-10A-01D-2129-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fdde6828-b9f4-4648-a86b-157c5d46abb2	51cea5c6-365a-4c91-90c1-05a2619bfdf4	g.chrX:47030561_47030563delGGA	uc004dhf.2	+	4	715_717	c.336_338delGGA	c.(334-339)GGGGAG>GGG	p.E119del	RBM10_uc004dhe.1_In_Frame_Del_p.E109del|RBM10_uc004dhg.2_Intron|RBM10_uc004dhh.2_In_Frame_Del_p.E119del|RBM10_uc010nhq.2_Intron|RBM10_uc004dhi.2_In_Frame_Del_p.E184del	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	119	Poly-Glu.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						CCGAGCAAGGggaggaggaggag	0.522		NA											4	9	---	---	---	---	NA	NA	NA	NA
