Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
KIAA1751	85452	broad.mit.edu	37	1	1896456	1896456	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:1896456C>G	uc001aim.1	-	13	1602	c.1446G>C	c.(1444-1446)AAG>AAC	p.K482N	KIAA1751_uc009vkz.1_Missense_Mutation_p.K482N	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	482										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CCTTGTCCATCTTTGTCCCGC	0.672		NA											3	20					0	0	0	0
C1orf127	148345	broad.mit.edu	37	1	11017770	11017770	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:11017770G>A	uc010oao.1	-	3	154	c.149C>T	c.(148-150)TCT>TTT	p.S50F	C1orf127_uc001arr.1_Missense_Mutation_p.S50F|C1orf127_uc001ars.1_Missense_Mutation_p.S50F	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	50										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		GTCTTCAAGAGAAGCCACCAG	0.577		NA											13	106					0	0	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887265	12887265	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:12887265C>T	uc001auk.2	-	3	788	c.592G>A	c.(592-594)GTT>ATT	p.V198I		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	198	LRR 1.										0						TGGGAGAGAACGAGCTTCTGA	0.517		NA											12	458					0	0	0	0
AKR7A2	8574	broad.mit.edu	37	1	19632584	19632584	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:19632584G>A	uc001bbw.2	-	6	868	c.846C>T	c.(844-846)GCC>GCT	p.A282A	AKR7A2_uc001bbx.2_Silent_p.A247A	NM_003689	NP_003680	O43488	ARK72_HUMAN	aldo-keto reductase family 7, member A2	282					carbohydrate metabolic process|cellular aldehyde metabolic process	Golgi apparatus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00461)|BRCA - Breast invasive adenocarcinoma(304;1.83e-05)|Kidney(64;0.000167)|GBM - Glioblastoma multiforme(114;0.00115)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CGCCATATGCGGCCTGCAGGG	0.632		NA											10	66					0	0	0	0
NBPF3	84224	broad.mit.edu	37	1	21800026	21800026	+	Silent	SNP	C	C	T	rs138236134		TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:21800026C>T	uc001ber.2	+	7	1238	c.888C>T	c.(886-888)CTC>CTT	p.L296L	NBPF3_uc001bes.2_Silent_p.L240L|NBPF3_uc009vqb.2_Silent_p.L296L|NBPF3_uc010odm.1_Silent_p.L226L	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	296	NBPF 1.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		ACTCAACTCTCATTGACTCAT	0.463		NA											31	222					0	0	0	0
GPR3	2827	broad.mit.edu	37	1	27721255	27721255	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:27721255C>T	uc001bod.2	+	2	1048	c.953C>T	c.(952-954)TCC>TTC	p.S318F		NM_005281	NP_005272	P46089	GPR3_HUMAN	G protein-coupled receptor 3	318	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane				ovary(1)	1		Breast(348;1.53e-05)|Ovarian(437;0.0606)|all_lung(284;0.157)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;2.81e-26)|Colorectal(126;1.24e-08)|KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;4.45e-06)|Lung(427;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|LUSC - Lung squamous cell carcinoma(448;0.008)|READ - Rectum adenocarcinoma(331;0.0419)		TGTTCCTCTTCCAAGATCCCC	0.527		NA											26	156					0	0	0	0
HIVEP3	59269	broad.mit.edu	37	1	42045932	42045932	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:42045932G>A	uc001cgz.3	-	4	5750	c.4537C>T	c.(4537-4539)CCT>TCT	p.P1513S	HIVEP3_uc001cha.3_Missense_Mutation_p.P1513S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1513					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GGGAGGGGAGGAATTTCCTTT	0.557		NA											6	57					0	0	0	0
IPO13	9670	broad.mit.edu	37	1	44424510	44424510	+	Silent	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:44424510T>C	uc001ckx.2	+	11	2772	c.1977T>C	c.(1975-1977)GAT>GAC	p.D659D		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	659	HEAT 11.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				ATGAGGATGATCATGAAGGCC	0.562		NA											11	78					0	0	0	0
ZNF644	84146	broad.mit.edu	37	1	91404992	91404992	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:91404992G>C	uc001dnw.2	-	3	2061	c.1919C>G	c.(1918-1920)ACT>AGT	p.T640S	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.T640S	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	640					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TAATGTTTTAGTGCTATCACT	0.348		NA											3	112					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103455092	103455092	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:103455092C>G	uc001dul.2	-	29	2694	c.2376G>C	c.(2374-2376)ATG>ATC	p.M792I	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.M804I|COL11A1_uc001dun.2_Missense_Mutation_p.M753I|COL11A1_uc009weh.2_Missense_Mutation_p.M676I	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	792	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CTTTTAGACCCATGTCACCTT	0.289		NA											4	55					0	0	0	0
PSRC1	84722	broad.mit.edu	37	1	109824269	109824269	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:109824269G>C	uc001dxg.2	-	4	613	c.491C>G	c.(490-492)TCT>TGT	p.S164C	PSRC1_uc001dxb.2_Translation_Start_Site|PSRC1_uc001dxc.2_Missense_Mutation_p.S164C|PSRC1_uc001dxd.2_Missense_Mutation_p.S164C|PSRC1_uc001dxe.2_Missense_Mutation_p.S164C|PSRC1_uc001dxf.2_Missense_Mutation_p.S164C|PSRC1_uc001dxh.2_Missense_Mutation_p.S164C|PSRC1_uc001dxi.2_Missense_Mutation_p.S164C|PSRC1_uc001dxj.2_Missense_Mutation_p.S164C	NM_001032290	NP_001027461	Q6PGN9	PSRC1_HUMAN	proline/serine-rich coiled-coil 1 isoform c	164	4 X 4 AA repeats of P-X-X-P.				cell division|microtubule bundle formation|mitotic metaphase plate congression|negative regulation of cell growth|positive regulation of microtubule polymerization|positive regulation of transcription, DNA-dependent|regulation of mitotic spindle organization	cytosol|midbody|spindle pole	microtubule binding				0		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0286)|Lung(183;0.0658)|COAD - Colon adenocarcinoma(174;0.112)|Epithelial(280;0.188)|all cancers(265;0.213)		CCTCTTTCCAGATGTAGCCCG	0.562		NA											18	84					0	0	0	0
MOV10	4343	broad.mit.edu	37	1	113238852	113238852	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:113238852C>T	uc001eck.2	+	12	2132	c.1862C>T	c.(1861-1863)ACC>ATC	p.T621I	MOV10_uc001ecl.2_Intron|MOV10_uc001ecn.2_Missense_Mutation_p.T621I|MOV10_uc001ecm.2_Missense_Mutation_p.T561I|MOV10_uc009wgj.1_Missense_Mutation_p.T561I	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	621					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		GTCTTAATTACCACCCTCATC	0.532		NA											5	52					0	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144816648	144816648	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:144816648G>C	uc009wig.1	+	13	1631	c.1555G>C	c.(1555-1557)GAA>CAA	p.E519Q	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.E519Q|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Missense_Mutation_p.E248Q|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.E179Q	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	519	NBPF 2.					cytoplasm					0						CTCTCATGTTGAACGGGAAGA	0.458		NA											39	275					0	0	0	0
CTSS	1520	broad.mit.edu	37	1	150722557	150722557	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:150722557C>T	uc001evn.2	-	6	851	c.718G>A	c.(718-720)GAA>AAA	p.E240K	CTSS_uc010pcj.1_Missense_Mutation_p.E190K|CTSS_uc001evo.1_Missense_Mutation_p.E240K	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	240					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			GCCACAGCTTCTTTCAGGACA	0.393		NA											8	29					0	0	0	0
FLAD1	80308	broad.mit.edu	37	1	154956218	154956218	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:154956218G>C	uc001fgf.1	+	1	402	c.48G>C	c.(46-48)AGG>AGC	p.R16S	FLAD1_uc001fgc.2_Intron|FLAD1_uc001fgd.1_Missense_Mutation_p.R16S|FLAD1_uc001fge.1_Intron|FLAD1_uc001fgg.1_Intron	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	16					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			AGGAACAAAGGAGTCGCTTGT	0.478		NA											4	75					0	0	0	0
RUSC1	23623	broad.mit.edu	37	1	155296505	155296505	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:155296505G>C	uc001fkj.2	+	8	2225	c.1996G>C	c.(1996-1998)GAG>CAG	p.E666Q	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fki.2_5'Flank|RUSC1_uc001fkk.2_Intron|RUSC1_uc009wqn.1_Intron|RUSC1_uc009wqo.1_Missense_Mutation_p.E197Q|RUSC1_uc001fkl.2_Missense_Mutation_p.E256Q|RUSC1_uc001fkp.2_Missense_Mutation_p.E197Q|RUSC1_uc001fkq.2_Intron|RUSC1_uc010pgb.1_Missense_Mutation_p.E164Q|RUSC1_uc009wqp.1_Missense_Mutation_p.E191Q|RUSC1_uc001fkn.2_5'UTR|RUSC1_uc001fko.2_Intron|RUSC1_uc001fkr.2_Missense_Mutation_p.E197Q|RUSC1_uc001fks.2_5'UTR	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	666	RUN.					cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			CCTGCTCTTTGAGCACCACCA	0.642		NA											22	89					0	0	0	0
FCRL4	83417	broad.mit.edu	37	1	157556033	157556033	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:157556033C>A	uc001fqw.2	-	6	1196	c.1060G>T	c.(1060-1062)GCA>TCA	p.A354S	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	354	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				TATCCCCCTGCATGGCTCTGT	0.537		NA											5	106					3.6e-05	6.2e-05	1	0
MNDA	4332	broad.mit.edu	37	1	158817562	158817562	+	Silent	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:158817562T>C	uc001fsz.1	+	6	1232	c.1032T>C	c.(1030-1032)AAT>AAC	p.N344N		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	344	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					TACAGGATAATACAGGATCCA	0.378		NA											12	73					0	0	0	0
ABL2	27	broad.mit.edu	37	1	179077353	179077353	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:179077353C>G	uc001gmj.3	-	12	3336	c.3049G>C	c.(3049-3051)GAA>CAA	p.E1017Q	ABL2_uc010pnf.1_Missense_Mutation_p.E914Q|ABL2_uc010png.1_Missense_Mutation_p.E893Q|ABL2_uc010pnh.1_Missense_Mutation_p.E996Q|ABL2_uc001gmg.3_Missense_Mutation_p.E899Q|ABL2_uc001gmi.3_Missense_Mutation_p.E1002Q|ABL2_uc001gmh.3_Missense_Mutation_p.E981Q|ABL2_uc010pne.1_Missense_Mutation_p.E878Q	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	1017	Pro-rich.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	TCCTGTGTTTCTGATGTGGAC	0.587		NA	T	ETV6	AML								19	119					0	0	0	0
ZNF281	23528	broad.mit.edu	37	1	200376835	200376835	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:200376835C>G	uc001gve.2	-	2	2106	c.1999G>C	c.(1999-2001)GAA>CAA	p.E667Q	ZNF281_uc001gvf.1_Missense_Mutation_p.E667Q|ZNF281_uc001gvg.1_Missense_Mutation_p.E631Q	NM_012482	NP_036614	Q9Y2X9	ZN281_HUMAN	zinc finger protein 281	667					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)	2						TTGGAGTATTCTTGCAACATA	0.403		NA											8	91					0	0	0	0
ZNF281	23528	broad.mit.edu	37	1	200377024	200377024	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:200377024C>A	uc001gve.2	-	2	1917	c.1810G>T	c.(1810-1812)GAT>TAT	p.D604Y	ZNF281_uc001gvf.1_Missense_Mutation_p.D604Y|ZNF281_uc001gvg.1_Missense_Mutation_p.D568Y	NM_012482	NP_036614	Q9Y2X9	ZN281_HUMAN	zinc finger protein 281	604					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)	2						AAAACCTCATCAGGAATTCCA	0.388		NA											7	52					2.77e-08	4.92e-08	1	0
PPP1R15B	84919	broad.mit.edu	37	1	204378784	204378784	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:204378784G>A	uc001hav.3	-	1	2161	c.1756C>T	c.(1756-1758)CGT>TGT	p.R586C		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	586					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			TTTGAGTCACGACAGCCTTTC	0.438		NA											4	54					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215823958	215823958	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:215823958G>A	uc001hku.1	-	65	14706	c.14319C>T	c.(14317-14319)AGC>AGT	p.S4773S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4773	Fibronectin type-III 33.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CATGGGCGCTGCTGGAGAACA	0.493		NA								HNSCC(13;0.011)			15	88					0	0	0	0
TP53BP2	7159	broad.mit.edu	37	1	223987709	223987709	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr1:223987709T>A	uc010pvb.1	-	11	1669	c.1377A>T	c.(1375-1377)AAA>AAT	p.K459N	TP53BP2_uc001hod.2_Missense_Mutation_p.K330N|TP53BP2_uc010puz.1_Translation_Start_Site|TP53BP2_uc010pva.1_Missense_Mutation_p.K98N	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	453					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		ACGGACGCACTTTCTTCTCTT	0.428		NA											5	51					0	0	0	0
GPR158	57512	broad.mit.edu	37	10	25701358	25701358	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr10:25701358G>A	uc001isj.2	+	4	1351	c.1291G>A	c.(1291-1293)GAC>AAC	p.D431N		NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	431	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TATGCTGCTCGACTTCGTTAG	0.488		NA											8	175					0	0	0	0
ZNF33B	7582	broad.mit.edu	37	10	43089160	43089160	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr10:43089160T>C	uc001jaf.1	-	5	1353	c.1238A>G	c.(1237-1239)TAT>TGT	p.Y413C	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Missense_Mutation_p.Y301C|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	413	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ATTACACTGATAGGGTTTCTC	0.423		NA											3	105					0	0	0	0
PCDH15	65217	broad.mit.edu	37	10	55955577	55955577	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr10:55955577G>C	uc001jju.1	-	11	1566	c.1171C>G	c.(1171-1173)CAA>GAA	p.Q391E	PCDH15_uc010qhq.1_Missense_Mutation_p.Q396E|PCDH15_uc010qhr.1_Missense_Mutation_p.Q391E|PCDH15_uc010qhs.1_Missense_Mutation_p.Q396E|PCDH15_uc010qht.1_Missense_Mutation_p.Q391E|PCDH15_uc010qhu.1_Missense_Mutation_p.Q391E|PCDH15_uc001jjv.1_Missense_Mutation_p.Q369E|PCDH15_uc010qhv.1_Missense_Mutation_p.Q391E|PCDH15_uc010qhw.1_Missense_Mutation_p.Q354E|PCDH15_uc010qhx.1_Missense_Mutation_p.Q391E|PCDH15_uc010qhy.1_Missense_Mutation_p.Q396E|PCDH15_uc010qhz.1_Missense_Mutation_p.Q391E|PCDH15_uc010qia.1_Missense_Mutation_p.Q369E|PCDH15_uc010qib.1_Missense_Mutation_p.Q369E|PCDH15_uc001jjw.2_Missense_Mutation_p.Q391E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	391	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TATGGACTTTGATTGTTTTCA	0.393		NA								HNSCC(58;0.16)			6	47					0	0	0	0
ZWINT	11130	broad.mit.edu	37	10	58118574	58118574	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr10:58118574C>G	uc001jjx.1	-	6	652	c.615G>C	c.(613-615)AAG>AAC	p.K205N	ZWINT_uc001jjy.1_Intron|ZWINT_uc001jka.1_Missense_Mutation_p.K205N|ZWINT_uc009xoy.1_RNA	NM_007057	NP_008988	O95229	ZWINT_HUMAN	ZW10 interactor isoform a	205	Potential.				cell division|establishment of localization in cell|mitotic cell cycle checkpoint|mitotic prometaphase|mitotic sister chromatid segregation|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytosol|nucleus	protein N-terminus binding				0						ACCTCTGCAGCTTGTCCCGCT	0.517		NA											20	138					0	0	0	0
DLG5	9231	broad.mit.edu	37	10	79570931	79570931	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr10:79570931C>G	uc001jzk.2	-	23	4454	c.4384G>C	c.(4384-4386)GAG>CAG	p.E1462Q	DLG5_uc001jzi.2_Missense_Mutation_p.E217Q|DLG5_uc001jzj.2_Missense_Mutation_p.E877Q|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1462					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			GATGGATGCTCCGGGGTGGTG	0.637		NA											14	79					0	0	0	0
GRID1	2894	broad.mit.edu	37	10	87966143	87966143	+	Silent	SNP	G	G	T	rs61744114		TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr10:87966143G>T	uc001kdl.1	-	3	599	c.498C>A	c.(496-498)GTC>GTA	p.V166V	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	166	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CGTAGAACATGACGAACTTCT	0.622		NA								Multiple Myeloma(13;0.14)			11	39					3.04e-14	5.49e-14	1	0
SEC31B	25956	broad.mit.edu	37	10	102249138	102249138	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr10:102249138C>T	uc001krc.1	-	23	3144	c.3042G>A	c.(3040-3042)ATG>ATA	p.M1014I	SEC31B_uc010qpo.1_Missense_Mutation_p.M1013I|SEC31B_uc001krd.1_Missense_Mutation_p.M551I|SEC31B_uc001krf.1_Missense_Mutation_p.M446I|SEC31B_uc001kre.1_Missense_Mutation_p.M446I	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	1014	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		GTGCTGGGGGCATAAATGTCT	0.527		NA											9	43					0	0	0	0
STK33	65975	broad.mit.edu	37	11	8414087	8414087	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:8414087G>A	uc001mgi.1	-	12	2434	c.1515C>T	c.(1513-1515)GGC>GGT	p.G505G	STK33_uc001mgj.1_Silent_p.G505G|STK33_uc001mgk.1_Silent_p.G505G|STK33_uc010rbn.1_Silent_p.G464G|STK33_uc001mgl.3_Silent_p.G318G	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	505						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		TGGACAGGGCGCCGGATTTAG	0.483		NA											34	201					0	0	0	0
RAG1	5896	broad.mit.edu	37	11	36597850	36597850	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:36597850C>G	uc001mwu.3	+	2	3120	c.2996C>G	c.(2995-2997)TCC>TGC	p.S999C	RAG1_uc001mwt.2_Intron	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	999					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TTGTACACCTCCAAATACCTC	0.448		NA							Familial_Hemophagocytic_Lymphohistiocytosis				14	73					0	0	0	0
OR5F1	338674	broad.mit.edu	37	11	55761664	55761664	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:55761664G>A	uc010riv.1	-	1	438	c.438C>T	c.(436-438)GCC>GCT	p.A146A		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					CAAAAGCCCCGGCTGCCATTT	0.502		NA											7	53					0	0	0	0
FAM111B	374393	broad.mit.edu	37	11	58891901	58891901	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:58891901C>T	uc001nnl.2	+	4	574	c.331C>T	c.(331-333)CTG>TTG	p.L111L	FAM111B_uc001nnm.2_Silent_p.L81L|FAM111B_uc010rko.1_Silent_p.L81L	NM_198947	NP_945185	Q6SJ93	F111B_HUMAN	hypothetical protein LOC374393 isoform a	111							catalytic activity			ovary(2)	2						CTACTCAGCCCTGAGTGCTAA	0.343		NA											9	48					0	0	0	0
OR4D6	219983	broad.mit.edu	37	11	59224763	59224763	+	Silent	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:59224763A>G	uc010rku.1	+	1	330	c.330A>G	c.(328-330)GCA>GCG	p.A110A		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGGTGGGGCAGATATTTTTT	0.488		NA											23	163					0	0	0	0
CPSF7	79869	broad.mit.edu	37	11	61196678	61196678	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:61196678T>C	uc001nrq.2	-	2	164	c.30A>G	c.(28-30)ATA>ATG	p.I10M	SDHAF2_uc001nrt.2_5'Flank|CPSF7_uc001nro.2_Missense_Mutation_p.I10M|CPSF7_uc001nrp.2_Missense_Mutation_p.I53M|CPSF7_uc001nrr.2_Missense_Mutation_p.I10M|CPSF7_uc001nrs.1_Translation_Start_Site|CPSF7_uc009ynp.2_Missense_Mutation_p.I10M	NM_001136040	NP_001129512	Q8N684	CPSF7_HUMAN	pre-mRNA cleavage factor I, 59 kDa subunit	10					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	mRNA cleavage factor complex	nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						CGTCAGCATATATATCAATCA	0.483		NA											30	162					0	0	0	0
SCGB1D1	10648	broad.mit.edu	37	11	61957758	61957758	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:61957758T>C	uc001nsz.1	+	1	49	c.2T>C	c.(1-3)ATG>ACG	p.M1T		NM_006552	NP_006543	O95968	SG1D1_HUMAN	lipophilin A precursor	1						extracellular space	binding			skin(1)	1						TAAGCCACCATGAGGCTGTCG	0.577		NA											3	57					0	0	0	0
NAALADL1	10004	broad.mit.edu	37	11	64813736	64813736	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:64813736C>T	uc001ocn.2	-	15	1796	c.1780G>A	c.(1780-1782)GAG>AAG	p.E594K	NAALADL1_uc010rnw.1_Missense_Mutation_p.E70K|NAALADL1_uc009ypz.2_RNA	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	594	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						CGGAGTGTCTCACTGTAGTCA	0.612		NA											12	50					0	0	0	0
ALDH3B2	222	broad.mit.edu	37	11	67431887	67431887	+	Missense_Mutation	SNP	C	C	T	rs147016371	byFrequency	TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:67431887C>T	uc001omr.2	-	8	1292	c.853G>A	c.(853-855)GCC>ACC	p.A285T	ALDH3B2_uc001oms.2_Missense_Mutation_p.A285T|ALDH3B2_uc009ysa.1_Missense_Mutation_p.A285T	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	285					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	TTGGAGAAGGCGTACAGGGCC	0.637		NA											15	124					0	0	0	0
ETS1	2113	broad.mit.edu	37	11	128359290	128359290	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:128359290T>C	uc010sbs.1	-	3	614	c.298A>G	c.(298-300)ATG>GTG	p.M100V	ETS1_uc001qej.2_Missense_Mutation_p.M144V|ETS1_uc009zch.2_Intron|ETS1_uc009zcg.2_Missense_Mutation_p.M100V	NM_005238	NP_005229	P14921	ETS1_HUMAN	v-ets erythroblastosis virus E26 oncogene	100	PNT.				cell motility|immune response|induction of apoptosis|negative regulation of cell cycle|negative regulation of cell cycle|negative regulation of cell proliferation|PML body organization|positive regulation of cellular component movement|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|response to antibiotic|transcription from RNA polymerase II promoter	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			lung(4)|central_nervous_system(1)|pleura(1)	6	all_hematologic(175;0.0537)	Lung NSC(97;0.000542)|all_lung(97;0.000665)|Breast(109;0.00765)|all_neural(223;0.0351)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.47e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0174)|LUSC - Lung squamous cell carcinoma(976;0.0815)|Lung(307;0.0833)		GCTCCATTCATACAGAACTTC	0.532		NA											18	139					0	0	0	0
NTM	50863	broad.mit.edu	37	11	132016253	132016253	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr11:132016253G>A	uc001qgp.2	+	2	909	c.245G>A	c.(244-246)TGG>TAG	p.W82*	NTM_uc001qgm.2_Nonsense_Mutation_p.W82*|NTM_uc010sch.1_Nonsense_Mutation_p.W73*|NTM_uc010sci.1_Nonsense_Mutation_p.W82*|NTM_uc010scj.1_Nonsense_Mutation_p.W41*|NTM_uc001qgo.2_Nonsense_Mutation_p.W82*|NTM_uc001qgq.2_Nonsense_Mutation_p.W82*	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	82	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						AATGACAAGTGGTGCCTGGAT	0.567		NA											14	61					0	0	0	0
HDAC7	51564	broad.mit.edu	37	12	48188581	48188581	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:48188581C>T	uc010slo.1	-	12	1615	c.1420G>A	c.(1420-1422)GAG>AAG	p.E474K	HDAC7_uc009zku.2_5'Flank|HDAC7_uc001rqe.2_5'Flank|HDAC7_uc001rqj.3_Missense_Mutation_p.E437K|HDAC7_uc001rqk.3_Missense_Mutation_p.E457K	NM_015401	NP_056216	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7 isoform a	435	Transcription repression 2 (By similarity).				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		CCTCTGGCCTCAGGCTGCCCA	0.657		NA											11	68					0	0	0	0
C12orf54	121273	broad.mit.edu	37	12	48888620	48888620	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:48888620G>A	uc001rrr.2	+	7	339	c.282G>A	c.(280-282)TTG>TTA	p.L94L	C12orf54_uc009zky.1_RNA	NM_152319	NP_689532	Q6X4T0	CL054_HUMAN	hypothetical protein LOC121273	94											0						CCCCAAAGTTGAGAAGATTGC	0.483		NA											11	120					0	0	0	0
ADCY6	112	broad.mit.edu	37	12	49165584	49165584	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:49165584T>C	uc001rsh.3	-	18	3620	c.2960A>G	c.(2959-2961)AAC>AGC	p.N987S	ADCY6_uc001rsj.3_Missense_Mutation_p.N987S|ADCY6_uc001rsi.3_Missense_Mutation_p.N934S|ADCY6_uc010slw.1_Missense_Mutation_p.N218S	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	987	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						CTCAGAGAAGTTGGCAATGGA	0.537		NA											9	56					0	0	0	0
ACVRL1	94	broad.mit.edu	37	12	52309043	52309043	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:52309043G>A	uc001rzj.2	+	7	1090	c.807G>A	c.(805-807)TCG>TCA	p.S269S	ACVRL1_uc001rzk.2_Silent_p.S269S|ACVRL1_uc010snm.1_Silent_p.S95S	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	269	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CCCGCAACTCGAGCACGCAGC	0.493		NA							Hereditary_Hemorrhagic_Telangiectasia				9	68					0	0	0	0
CCT2	10576	broad.mit.edu	37	12	69987352	69987352	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:69987352A>T	uc001svb.1	+	10	1035	c.941A>T	c.(940-942)CAT>CTT	p.H314L	CCT2_uc009zrm.1_RNA|CCT2_uc009zrn.1_Missense_Mutation_p.H314L|CCT2_uc010stl.1_Missense_Mutation_p.H267L	NM_006431	NP_006422	P78371	TCPB_HUMAN	chaperonin containing TCP1, subunit 2	314					'de novo' posttranslational protein folding	nucleus	ATP binding|unfolded protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(2;7.7e-106)|Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.72e-18)|GBM - Glioblastoma multiforme(2;2.58e-10)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			GCTATTGAGCATGCAGATTTT	0.318		NA											9	45					0	0	0	0
FGD6	55785	broad.mit.edu	37	12	95603436	95603436	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:95603436G>A	uc001tdp.3	-	2	1848	c.1624C>T	c.(1624-1626)CAG>TAG	p.Q542*	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	542					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						CACAAATGCTGAAGGTGATTT	0.423		NA											10	89					0	0	0	0
CRY1	1407	broad.mit.edu	37	12	107415889	107415889	+	Silent	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:107415889T>C	uc001tmi.3	-	2	1099	c.240A>G	c.(238-240)CCA>CCG	p.P80P		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	80	DNA photolyase.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						ACACATCTGCTGGTTGTCCAC	0.323		NA											22	127					0	0	0	0
RSRC2	65117	broad.mit.edu	37	12	122991393	122991393	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:122991393C>T	uc001ucr.2	-	9	1259	c.1113G>A	c.(1111-1113)TTG>TTA	p.L371L	RSRC2_uc001uco.2_Silent_p.L140L|RSRC2_uc001ucp.2_Silent_p.L312L|RSRC2_uc001ucq.2_Silent_p.L139L|RSRC2_uc001ucs.2_Silent_p.L140L|RSRC2_uc001uct.2_Silent_p.L323L|RSRC2_uc001ucu.2_Silent_p.L372L	NM_023012	NP_075388	Q7L4I2	RSRC2_HUMAN	arginine/serine-rich coiled-coil 2 isoform a	371										ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.14e-05)|Epithelial(86;0.000183)|BRCA - Breast invasive adenocarcinoma(302;0.201)		TAATACCCATCAATTTCCTAA	0.289		NA											12	116					0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124832798	124832798	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr12:124832798C>T	uc010tba.1	-	29	4048	c.3931G>A	c.(3931-3933)GAG>AAG	p.E1311K	NCOR2_uc010tay.1_Missense_Mutation_p.E1310K|NCOR2_uc010taz.1_Missense_Mutation_p.E1294K|NCOR2_uc010tbb.1_Missense_Mutation_p.E1303K|NCOR2_uc010tbc.1_Missense_Mutation_p.E1293K|NCOR2_uc001ugj.1_Missense_Mutation_p.E1311K	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1311					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCGGCCGTCTCATGGGGGGGT	0.622		NA									OREG0022238	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	61					0	0	0	0
BRCA2	675	broad.mit.edu	37	13	32972546	32972546	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr13:32972546A>G	uc001uub.1	+	27	10123	c.9896A>G	c.(9895-9897)CAG>CGG	p.Q3299R		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3299					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAGGCATTTCAGCCACCAAGG	0.398		NA	D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			3	93					0	0	0	0
NEK3	4752	broad.mit.edu	37	13	52709904	52709904	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr13:52709904G>C	uc001vgi.2	-	16	1505	c.1270C>G	c.(1270-1272)CTC>GTC	p.L424V	NEK3_uc001vgg.2_Missense_Mutation_p.L401V|NEK3_uc001vgh.2_Missense_Mutation_p.L428V|NEK3_uc010tgx.1_RNA|NEK3_uc010tgy.1_Missense_Mutation_p.L407V	NM_152720	NP_689933	P51956	NEK3_HUMAN	NIMA-related kinase 3 isoform a	424					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.034)|Hepatocellular(98;0.065)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.81e-08)		GCCAAGCTGAGATCAGCATTC	0.358		NA											7	39					0	0	0	0
ZIC5	85416	broad.mit.edu	37	13	100617654	100617654	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr13:100617654C>T	uc001vom.1	-	2	2218	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K		NM_033132	NP_149123	Q96T25	ZIC5_HUMAN	zinc finger protein of the cerebellum 5	657					cell differentiation	nucleus	DNA binding|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CGCACAACTTCAGGGTTCCCG	0.478		NA											13	69					0	0	0	0
OR4K15	81127	broad.mit.edu	37	14	20443780	20443780	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr14:20443780G>A	uc010tkx.1	+	1	103	c.103G>A	c.(103-105)GAA>AAA	p.E35K		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	35	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCGGGTGACAGAATTTGTGTT	0.398		NA											12	101					0	0	0	0
SYNE2	23224	broad.mit.edu	37	14	64564717	64564717	+	Silent	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr14:64564717A>G	uc001xgm.2	+	62	12389	c.12159A>G	c.(12157-12159)AAA>AAG	p.K4053K	SYNE2_uc001xgl.2_Silent_p.K4053K|SYNE2_uc010apy.2_Silent_p.K438K|SYNE2_uc010apx.1_Silent_p.K445K|MIR548H-1_hsa-mir-548h-1|MI0006411_5'Flank|SYNE2_uc010apz.1_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4053	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ACCAGAGAAAAGAAGACCTGT	0.448		NA											11	81					0	0	0	0
CEP152	22995	broad.mit.edu	37	15	49054667	49054667	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr15:49054667T>C	uc001zwy.2	-	18	2517	c.2483A>G	c.(2482-2484)AAG>AGG	p.K828R	CEP152_uc001zwz.2_Missense_Mutation_p.K828R|CEP152_uc001zxa.1_Missense_Mutation_p.K735R	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	828					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		GGCTATGTCCTTCTCTTGTTC	0.373		NA											40	70					0	0	0	0
PIGB	9488	broad.mit.edu	37	15	55622047	55622047	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr15:55622047G>A	uc002act.2	+	5	964	c.648G>A	c.(646-648)ATG>ATA	p.M216I	PIGB_uc010ugg.1_Missense_Mutation_p.M21I	NM_004855	NP_004846	Q92521	PIGB_HUMAN	phosphatidylinositol glycan, class B	216					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	integral to membrane|intrinsic to endoplasmic reticulum membrane	glycolipid mannosyltransferase activity				0				all cancers(107;0.0255)		CAAAGTCTATGAACAGGTAAG	0.308		NA											23	53					0	0	0	0
VPS13C	54832	broad.mit.edu	37	15	62256970	62256970	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr15:62256970G>C	uc002agz.2	-	31	3216	c.3142C>G	c.(3142-3144)CAA>GAA	p.Q1048E	VPS13C_uc002aha.2_Missense_Mutation_p.Q1005E|VPS13C_uc002ahb.1_Missense_Mutation_p.Q1048E|VPS13C_uc002ahc.1_Missense_Mutation_p.Q1005E	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	1048					protein localization					ovary(2)	2						CTTATGCTTTGATCATCAGAT	0.328		NA											22	57					0	0	0	0
HCN4	10021	broad.mit.edu	37	15	73614875	73614875	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr15:73614875C>T	uc002avp.2	-	8	4553	c.3559G>A	c.(3559-3561)GAA>AAA	p.E1187K		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	1187	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		GCCCCAGGTTCCCTCTGGGGT	0.493		NA											5	15					0	0	0	0
TSC2	7249	broad.mit.edu	37	16	2098710	2098710	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr16:2098710G>C	uc002con.2	+	2	200	c.94G>C	c.(94-96)GAG>CAG	p.E32Q	NTHL1_uc002col.1_5'Flank|NTHL1_uc002com.1_5'Flank|TSC2_uc010uvu.1_Missense_Mutation_p.E32Q|TSC2_uc010bsd.2_Missense_Mutation_p.E32Q|TSC2_uc002coo.2_Missense_Mutation_p.E32Q|TSC2_uc010uvv.1_Missense_Mutation_p.E32Q|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_5'UTR	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	32	Required for interaction with TSC1.				cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				CAGGTCTGCAGAGGGTAAACA	0.502		NA	D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				9	89					0	0	0	0
ZNF434	54925	broad.mit.edu	37	16	3434561	3434561	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr16:3434561C>T	uc002cuz.2	-	5	1298	c.496G>A	c.(496-498)GAT>AAT	p.D166N	ZNF434_uc002cux.3_Missense_Mutation_p.D377N|ZNF434_uc010uwx.1_Missense_Mutation_p.D89N|ZNF434_uc002cuy.3_Missense_Mutation_p.D89N|ZNF434_uc010uwy.1_Missense_Mutation_p.D89N|ZNF434_uc010uwz.1_Missense_Mutation_p.D377N|ZNF434_uc010uxa.1_Missense_Mutation_p.D166N	NM_017810	NP_060280	Q9NX65	ZN434_HUMAN	zinc finger protein 434	166					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ACAGTGCCATCTTCTACCTCC	0.527		NA											18	129					0	0	0	0
PDXDC1	23042	broad.mit.edu	37	16	15130131	15130131	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr16:15130131G>A	uc002dda.3	+	23	2590	c.2366G>A	c.(2365-2367)TGA>TAA	p.*789*	PDXDC1_uc010uzl.1_Silent_p.*774*|PDXDC1_uc010uzm.1_Silent_p.*698*|PDXDC1_uc002ddb.3_Silent_p.*762*|PDXDC1_uc010uzn.1_Silent_p.*761*|PDXDC1_uc002ddc.2_Intron	NM_015027	NP_055842	Q6P996	PDXD1_HUMAN	pyridoxal-dependent decarboxylase domain	789					carboxylic acid metabolic process		carboxy-lyase activity|protein binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	AGCTTAAGATGAGACTCATTG	0.478		NA											11	85					0	0	0	0
ITGAM	3684	broad.mit.edu	37	16	31282283	31282283	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr16:31282283C>G	uc002ebq.2	+	6	534	c.436C>G	c.(436-438)CAA>GAA	p.Q146E	ITGAM_uc002ebr.2_Missense_Mutation_p.Q146E	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	146	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						AGGGTGTCCTCAAGAGGATAG	0.453		NA											42	216					0	0	0	0
ADCY7	113	broad.mit.edu	37	16	50348223	50348223	+	Silent	SNP	C	C	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr16:50348223C>A	uc002egd.1	+	23	3145	c.2877C>A	c.(2875-2877)GCC>GCA	p.A959A		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	959	Cytoplasmic (Potential).|Guanylate cyclase 2.				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	GGCAGCATGCCCACATTGGTG	0.622		NA											5	37					0.00116845	0.00196211	1	0
USP6	9098	broad.mit.edu	37	17	5048731	5048731	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:5048731C>T	uc002gau.1	+	27	4254	c.2024C>T	c.(2023-2025)TCA>TTA	p.S675L	USP6_uc002gav.1_Missense_Mutation_p.S675L|USP6_uc010ckz.1_Missense_Mutation_p.S358L	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	675					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						AGAAATAGATCAATTATTGTG	0.358		NA	T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								9	62					0	0	0	0
KIAA0753	9851	broad.mit.edu	37	17	6510503	6510503	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:6510503C>G	uc002gde.3	-	11	2276	c.1917G>C	c.(1915-1917)CAG>CAC	p.Q639H	KIAA0753_uc010vtd.1_Missense_Mutation_p.Q95H|KIAA0753_uc010clo.2_Missense_Mutation_p.Q340H|KIAA0753_uc010vte.1_Missense_Mutation_p.Q340H	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	639	Potential.					centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		ATATTTACCTCTGTTTTTGCA	0.373		NA											20	167					0	0	0	0
BCL6B	255877	broad.mit.edu	37	17	6930392	6930392	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:6930392G>C	uc002geg.2	+	8	1366	c.1309G>C	c.(1309-1311)GAG>CAG	p.E437Q	BCL6B_uc010clt.1_Missense_Mutation_p.E438Q	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	437						nucleus	zinc ion binding			skin(1)	1						CCACACCGGAGAGAAGCCTTA	0.632		NA											4	61					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578442	7578442	+	Missense_Mutation	SNP	T	T	C	rs148924904		TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:7578442T>C	uc002gim.2	-	5	682	c.488A>G	c.(487-489)TAC>TGC	p.Y163C	TP53_uc002gig.1_Missense_Mutation_p.Y163C|TP53_uc002gih.2_Missense_Mutation_p.Y163C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y31C|TP53_uc010cng.1_Missense_Mutation_p.Y31C|TP53_uc002gii.1_Missense_Mutation_p.Y31C|TP53_uc010cnh.1_Missense_Mutation_p.Y163C|TP53_uc010cni.1_Missense_Mutation_p.Y163C|TP53_uc002gij.2_Missense_Mutation_p.Y163C|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.Y70C|TP53_uc002gio.2_Missense_Mutation_p.Y31C|TP53_uc010vug.1_Missense_Mutation_p.Y124C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	163	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		Y -> F (in a sporadic cancer; somatic mutation).|Y -> H (in sporadic cancers; somatic mutation).|Y -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|Y -> S (in sporadic cancers; somatic mutation).|Y -> N (in sporadic cancers; somatic mutation).|Y -> D (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Y163C(95)|p.Y163N(17)|p.Y163H(17)|p.Y163*(7)|p.0?(7)|p.Y163S(4)|p.Y163Y(3)|p.Y163fs*1(2)|p.Y163D(2)|p.Y163fs*7(2)|p.V157_C176del20(1)|p.Y163_Q165delYKQ(1)|p.P151_V173del23(1)|p.Y163fs*14(1)|p.S149fs*72(1)|p.A159_Q167delAMAIYKQSQ(1)|p.Y163fs*18(1)|p.I162_Y163delIY(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TGACTGCTTGTAGATGGCCAT	0.622		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			16	50					0	0	0	0
ALOX12B	242	broad.mit.edu	37	17	7984278	7984278	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:7984278G>A	uc002gjy.1	-	4	712	c.451C>T	c.(451-453)CCT>TCT	p.P151S	uc010cnq.1_RNA	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	151	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GGCAGGCCAGGAAGAAAGACT	0.642		NA								Multiple Myeloma(8;0.094)			6	66					0	0	0	0
MYH1	4619	broad.mit.edu	37	17	10408257	10408257	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:10408257G>T	uc002gmo.2	-	22	2655	c.2561C>A	c.(2560-2562)GCC>GAC	p.A854D	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	854	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTTCATGTTGGCCATCTCCTT	0.443		NA											18	98					0.000175454	0.000300297	1	0
AKAP10	11216	broad.mit.edu	37	17	19850729	19850729	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:19850729C>T	uc002gwo.2	-	5	1104	c.967G>A	c.(967-969)GAC>AAC	p.D323N	AKAP10_uc002gwp.1_Missense_Mutation_p.D323N|AKAP10_uc010cqw.1_Missense_Mutation_p.D323N|AKAP10_uc010vze.1_Missense_Mutation_p.D244N	NM_007202	NP_009133	O43572	AKA10_HUMAN	A-kinase anchor protein 10 precursor	323	RGS 1.				blood coagulation|protein localization	cytosol|mitochondrion|plasma membrane	signal transducer activity			skin(1)	1	all_cancers(12;2.08e-05)|all_epithelial(12;0.00158)|Breast(13;0.165)					CCTATGATGTCATTTCTCATT	0.323		NA											12	98					0	0	0	0
PIP4K2B	8396	broad.mit.edu	37	17	36927505	36927505	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:36927505G>C	uc002hqs.2	-	8	1309	c.828C>G	c.(826-828)ATC>ATG	p.I276M	PIP4K2B_uc010cvp.2_5'Flank	NM_003559	NP_003550	P78356	PI42B_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	276	PIPK.				cell surface receptor linked signaling pathway	endoplasmic reticulum membrane|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|receptor signaling protein activity			ovary(1)	1						TGTAGTCCATGATCTTCAGCT	0.413		NA											8	39					0	0	0	0
KRT39	390792	broad.mit.edu	37	17	39122956	39122956	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:39122956G>A	uc002hvo.1	-	1	189	c.153C>T	c.(151-153)CTC>CTT	p.L51L	KRT39_uc010wfm.1_5'UTR	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	51	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				AGGGAATTCTGAGAACGTGGC	0.498		NA											41	243					0	0	0	0
ITGA3	3675	broad.mit.edu	37	17	48148225	48148225	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:48148225C>T	uc010dbl.2	+	5	1146	c.682C>T	c.(682-684)CAG>TAG	p.Q228*	ITGA3_uc010dbm.2_Nonsense_Mutation_p.Q228*	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	228	FG-GAP 3.|Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						CTACATGATTCAGCGCAAGGA	0.502		NA											37	229					0	0	0	0
BZRAP1	9256	broad.mit.edu	37	17	56397485	56397485	+	Silent	SNP	G	G	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:56397485G>T	uc002ivx.3	-	12	2350	c.1479C>A	c.(1477-1479)ACC>ACA	p.T493T	BZRAP1_uc010dcs.2_Silent_p.T433T|BZRAP1_uc010wnt.1_Silent_p.T493T	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	493						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGAATCCAAGGTAGACTGTT	0.592		NA											9	47					3.1e-07	5.46e-07	1	0
CCDC47	57003	broad.mit.edu	37	17	61838631	61838631	+	Missense_Mutation	SNP	A	A	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:61838631A>C	uc002jbs.3	-	5	964	c.628T>G	c.(628-630)TCT>GCT	p.S210A	CCDC47_uc010ddx.2_Missense_Mutation_p.S210A|CCDC47_uc002jbt.2_Missense_Mutation_p.S210A	NM_020198	NP_064583	Q96A33	CCD47_HUMAN	coiled-coil domain containing 47 precursor	210						integral to membrane	protein binding				0						ACTCGACCAGAACACCACAGG	0.433		NA											17	96					0	0	0	0
CACNG5	27091	broad.mit.edu	37	17	64876761	64876761	+	Missense_Mutation	SNP	G	G	A	rs145214481		TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:64876761G>A	uc010wqi.1	+	4	608	c.371G>A	c.(370-372)CGT>CAT	p.R124H	CACNG5_uc002jfr.2_Missense_Mutation_p.R124H|CACNG5_uc010wqj.1_Missense_Mutation_p.R124H	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	124					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			GGACACATCCGTCCCCACCGG	0.453		NA											20	129					0	0	0	0
RAC3	5881	broad.mit.edu	37	17	79991361	79991361	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:79991361C>T	uc002kdf.2	+	5	440	c.334C>T	c.(334-336)CTG>TTG	p.L112L		NM_005052	NP_005043	P60763	RAC3_HUMAN	ras-related C3 botulinum toxin substrate 3 (rho	112					actin cytoskeleton organization|cell projection assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endomembrane system|filamentous actin|growth cone|lamellipodium|neuronal cell body|plasma membrane	GTP binding|GTPase activity|protein binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			GCCCATCCTCCTGGTGGGCAC	0.672		NA											4	47					0	0	0	0
RAC3	5881	broad.mit.edu	37	17	79991599	79991599	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:79991599C>G	uc002kdf.2	+	6	579	c.473C>G	c.(472-474)TCA>TGA	p.S158*		NM_005052	NP_005043	P60763	RAC3_HUMAN	ras-related C3 botulinum toxin substrate 3 (rho	158					actin cytoskeleton organization|cell projection assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endomembrane system|filamentous actin|growth cone|lamellipodium|neuronal cell body|plasma membrane	GTP binding|GTPase activity|protein binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CTGGAGTGCTCAGCCCTGACC	0.657		NA											9	43					0	0	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995815	19995815	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr18:19995815C>T	uc002ktv.1	-	1	2064	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	654						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					CCAGTTGCTTCATTTTCAGCG	0.453		NA											24	244					0	0	0	0
AP3D1	8943	broad.mit.edu	37	19	2110168	2110168	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:2110168C>T	uc002luz.2	-	26	3268	c.3045G>A	c.(3043-3045)CAG>CAA	p.Q1015Q	AP3D1_uc010dsv.2_Silent_p.Q105Q|AP3D1_uc002luy.2_Silent_p.Q974Q|AP3D1_uc002lva.2_Silent_p.Q1077Q	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	1015					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTTGAGCTTCTGCGCCATGA	0.642		NA											9	39					0	0	0	0
ZNF77	58492	broad.mit.edu	37	19	2934164	2934164	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:2934164C>G	uc002lws.3	-	4	1092	c.961G>C	c.(961-963)GAG>CAG	p.E321Q		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	321					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGGTTTCTCTCCAGTGTGC	0.458		NA											9	91					0	0	0	0
SAFB	6294	broad.mit.edu	37	19	5667066	5667066	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:5667066G>A	uc002mcf.2	+	18	2397	c.2344G>A	c.(2344-2346)GAA>AAA	p.E782K	SAFB_uc002mcg.2_Missense_Mutation_p.E782K|SAFB_uc002mce.3_Missense_Mutation_p.E781K|SAFB_uc010xir.1_Missense_Mutation_p.E781K|SAFB_uc010xis.1_Missense_Mutation_p.E713K|SAFB_uc010xit.1_Missense_Mutation_p.E624K|SAFB_uc010xiu.1_Missense_Mutation_p.E581K	NM_002967	NP_002958	Q15424	SAFB1_HUMAN	scaffold attachment factor B	782	Interaction with SAFB2.|Interaction with POLR2A.|Arg-rich.				chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding			ovary(1)|liver(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		GCATTACCCAGAACGCCATGG	0.607		NA											14	113					0	0	0	0
CCDC151	115948	broad.mit.edu	37	19	11532486	11532486	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:11532486G>A	uc002mrs.2	-	11	1592	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F	CCDC151_uc002mrr.2_Silent_p.F418F|CCDC151_uc010dxz.2_Silent_p.F423F|RGL3_uc002mrn.2_5'Flank|RGL3_uc002mrm.2_5'Flank|RGL3_uc002mro.2_5'Flank|RGL3_uc002mrp.2_5'Flank|RGL3_uc002mrq.2_5'Flank	NM_145045	NP_659482	A5D8V7	CC151_HUMAN	coiled-coil domain containing 151	483										ovary(1)	1						CCTTTCCCGCGAAGCGGCCGT	0.662		NA											11	65					0	0	0	0
MAST1	22983	broad.mit.edu	37	19	12951862	12951862	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:12951862C>G	uc002mvm.2	+	3	358	c.230C>G	c.(229-231)TCG>TGG	p.S77W	MAST1_uc002mvk.2_Missense_Mutation_p.S73W|MAST1_uc002mvl.2_Missense_Mutation_p.S77W	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	77					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GCCCACTTCTCGTTTGCCTCC	0.632		NA											17	77					0	0	0	0
GADD45GIP1	90480	broad.mit.edu	37	19	13065144	13065144	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:13065144C>G	uc002mwb.2	-	2	571	c.547G>C	c.(547-549)GAG>CAG	p.E183Q		NM_052850	NP_443082	Q8TAE8	G45IP_HUMAN	growth arrest and DNA-damage-inducible, gamma	183	Potential.				cell cycle|interspecies interaction between organisms	nucleus	protein binding			ovary(1)|skin(1)	2						TCCTTCTTCTCTAGGTCCTGG	0.627		NA											17	130					0	0	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025612	16025612	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:16025612C>T	uc002nbu.2	-	10	1245	c.1209G>A	c.(1207-1209)ACG>ACA	p.T403T	CYP4F11_uc010eab.1_Silent_p.T403T|CYP4F11_uc002nbt.2_Silent_p.T403T	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	403					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CAAAGTCCTGCGTGCAACATC	0.632		NA											19	106					0	0	0	0
GATAD2A	54815	broad.mit.edu	37	19	19603492	19603492	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:19603492C>G	uc010xqt.1	+	4	817	c.505C>G	c.(505-507)CAA>GAA	p.Q169E	GATAD2A_uc010xqu.1_Intron|GATAD2A_uc010xqv.1_Missense_Mutation_p.Q188E|GATAD2A_uc010xqw.1_Missense_Mutation_p.Q26E	NM_017660	NP_060130	Q86YP4	P66A_HUMAN	GATA zinc finger domain containing 2A	169	Potential.				DNA methylation|negative regulation of transcription, DNA-dependent	nuclear speck|NuRD complex	protein binding, bridging|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCGGCAGAGTCAAATACAAAA	0.517		NA											5	54					0	0	0	0
ZNF91	7644	broad.mit.edu	37	19	23544684	23544684	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:23544684G>T	uc002nre.2	-	4	1210	c.1097C>A	c.(1096-1098)GCT>GAT	p.A366D	ZNF91_uc010xrj.1_Missense_Mutation_p.A334D	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	366	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				CTTATGATTAGCAAGGGTTGA	0.348		NA											11	42					6.4e-05	0.000109827	1	0
ZNF568	374900	broad.mit.edu	37	19	37440746	37440746	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:37440746T>G	uc002ofc.2	+	7	1206	c.691T>G	c.(691-693)TTC>GTC	p.F231V	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.F155V|ZNF568_uc010efe.2_Missense_Mutation_p.F155V|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	231	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGGACAAGACTTCAGTCATAA	0.388		NA											10	57					0	0	0	0
SPINT2	10653	broad.mit.edu	37	19	38781203	38781203	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:38781203C>G	uc002ohr.1	+	6	911	c.580C>G	c.(580-582)CTT>GTT	p.L194V	SPINT2_uc002ohs.1_Missense_Mutation_p.L137V	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	194	Extracellular (Potential).				cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TCCCCTGCCCCTTGGCTCAAA	0.612		NA											4	25					0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40364331	40364331	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:40364331C>T	uc002omp.3	-	31	14319	c.14311G>A	c.(14311-14313)GAA>AAA	p.E4771K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4771	TIL 11.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACACAGCCTTCACGGCAGGCC	0.652		NA											10	71					0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40366539	40366539	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:40366539C>T	uc002omp.3	-	30	13703	c.13695G>A	c.(13693-13695)CAG>CAA	p.Q4565Q		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4565	VWFD 11.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCGAGTCCAGCTGGAAAGGCA	0.602		NA											10	60					0	0	0	0
PLAUR	5329	broad.mit.edu	37	19	44160641	44160641	+	Silent	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:44160641T>C	uc002oxf.1	-	4	692	c.462A>G	c.(460-462)GAA>GAG	p.E154E	PLAUR_uc002oxd.1_Silent_p.E154E|PLAUR_uc002oxe.1_Silent_p.E149E|PLAUR_uc002oxg.1_Silent_p.E154E	NM_002659	NP_002650	Q03405	UPAR_HUMAN	plasminogen activator, urokinase receptor	154	UPAR/Ly6 2.				attachment of GPI anchor to protein|blood coagulation|C-terminal protein lipidation|cellular component movement|chemotaxis|fibrinolysis|regulation of proteolysis	anchored to membrane|cell surface|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|extrinsic to membrane|integral to membrane|plasma membrane	enzyme binding|U-plasminogen activator receptor activity			ovary(1)	1		Prostate(69;0.0153)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Streptokinase(DB00086)|Tenecteplase(DB00031)|Urokinase(DB00013)	CTTCTTCACCTTCCTGGATCC	0.493		NA											23	119					0	0	0	0
ZNF610	162963	broad.mit.edu	37	19	52852486	52852486	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:52852486C>G	uc002pyx.3	+	3	467	c.61C>G	c.(61-63)CAG>GAG	p.Q21E	ZNF610_uc002pyy.3_Missense_Mutation_p.Q21E|ZNF610_uc002pyz.3_Missense_Mutation_p.Q21E|ZNF610_uc002pza.2_Missense_Mutation_p.Q21E	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	21					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		GGCTCTTCCTCAGGTAAAGTG	0.448		NA											6	34					0	0	0	0
NCR1	9437	broad.mit.edu	37	19	55421380	55421380	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:55421380G>A	uc002qib.2	+	5	675	c.637G>A	c.(637-639)GAC>AAC	p.D213N	NCR1_uc002qic.2_Missense_Mutation_p.D213N|NCR1_uc002qie.2_Missense_Mutation_p.D213N|NCR1_uc002qid.2_Missense_Mutation_p.D118N|NCR1_uc002qif.2_Missense_Mutation_p.D118N|NCR1_uc010esj.2_Missense_Mutation_p.D106N	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	213	Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		TTTTCCAGGCGACATTGAGAA	0.398		NA											23	169					0	0	0	0
EPN1	29924	broad.mit.edu	37	19	56204351	56204351	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr19:56204351C>A	uc002qlw.2	+	9	1554	c.1212C>A	c.(1210-1212)TTC>TTA	p.F404L	EPN1_uc002qlv.2_Missense_Mutation_p.F378L|EPN1_uc010etd.2_Missense_Mutation_p.F403L|EPN1_uc002qlx.2_Missense_Mutation_p.F490L	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	404	[DE]-X(1,2)-F-X-X-[FL]-X-X-X-R motif.|Ala/Gly/Pro-rich.			F->A: Reduces interaction with AP2B1.	endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		CCGACGAGTTCTCTGACTTTG	0.701		NA											13	117					4.38e-07	7.69e-07	1	0
ALMS1	7840	broad.mit.edu	37	2	73828456	73828456	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:73828456G>A	uc002sje.1	+	21	12121	c.12010G>A	c.(12010-12012)GAG>AAG	p.E4004K	ALMS1_uc002sjf.1_Missense_Mutation_p.E3960K|ALMS1_uc002sjh.1_Missense_Mutation_p.E3390K	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	4002					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GCCACTGCGGGAGCAGAACTG	0.582		NA											18	106					0	0	0	0
PROM2	150696	broad.mit.edu	37	2	95941259	95941259	+	Splice_Site	SNP	G	G	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:95941259G>T	uc002suh.1	+	2	427	c.294_splice	c.e2+1	p.E98_splice	PROM2_uc002sui.2_Splice_Site_p.E98_splice|PROM2_uc002suj.2_Splice_Site|PROM2_uc002suk.2_Splice_Site_p.E98_splice|PROM2_uc002sul.2_Splice_Site	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor							apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						GGTGAATGAGGTGAGCAAGCT	0.602		NA											5	45					0.00116845	0.00196211	1	0
PSD4	23550	broad.mit.edu	37	2	113943603	113943603	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:113943603G>C	uc002tjc.2	+	5	1582	c.1399G>C	c.(1399-1401)GAG>CAG	p.E467Q	PSD4_uc002tjd.2_Missense_Mutation_p.E88Q|PSD4_uc002tje.2_Missense_Mutation_p.E438Q|PSD4_uc002tjf.2_Missense_Mutation_p.E88Q	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	467					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						ATCGTCCCAGGAGGGCAGCCC	0.617		NA											8	59					0	0	0	0
TMEM177	80775	broad.mit.edu	37	2	120439337	120439337	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:120439337G>C	uc010flg.1	+	2	1381	c.908G>C	c.(907-909)AGG>ACG	p.R303T	TMEM177_uc002tme.2_Intron|TMEM177_uc002tmc.1_Missense_Mutation_p.R303T|TMEM177_uc002tmd.2_Missense_Mutation_p.R303T|TMEM177_uc010flh.2_Intron	NM_001105198	NP_001098668	Q53S58	TM177_HUMAN	transmembrane protein 177	303						integral to membrane				ovary(1)	1	Colorectal(110;0.196)					CAGATGTGGAGGGGGATGCTC	0.577		NA											9	80					0	0	0	0
SCN1A	6323	broad.mit.edu	37	2	166854606	166854606	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:166854606A>G	uc010zcz.1	-	23	4403	c.4385T>C	c.(4384-4386)TTC>TCC	p.F1462S	SCN1A_uc002udo.3_Missense_Mutation_p.F1342S|SCN1A_uc010fpk.2_Missense_Mutation_p.F1314S	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1473	Helical; Name=S6 of repeat III; (By similarity).|III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GTTCAAGGTGAAGAAGGACCC	0.343		NA											4	39					0	0	0	0
TTC30A	92104	broad.mit.edu	37	2	178481760	178481760	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:178481760T>C	uc002ulo.2	-	1	1935	c.1670A>G	c.(1669-1671)AAA>AGA	p.K557R		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	557	TPR 8.				cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			ATAGTTTCCTTTGGCACAATA	0.383		NA											4	242					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179440094	179440094	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:179440094C>G	uc010zfg.1	-	275	63285	c.63061G>C	c.(63061-63063)GAA>CAA	p.E21021Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E14716Q|TTN_uc010zfi.1_Missense_Mutation_p.E14649Q|TTN_uc010zfj.1_Missense_Mutation_p.E14524Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21948							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAACACATTCTAACCCTTTC	0.507		NA											11	67					0	0	0	0
CWC22	57703	broad.mit.edu	37	2	180838488	180838488	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:180838488G>A	uc010frh.1	-	7	923	c.623C>T	c.(622-624)TCT>TTT	p.S208F	CWC22_uc002unp.2_Missense_Mutation_p.S208F	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	208	MIF4G.					catalytic step 2 spliceosome	protein binding|RNA binding				0						GAAGATTGGAGAAGCACTCTG	0.328		NA											7	50					0	0	0	0
SLC4A3	6508	broad.mit.edu	37	2	220496825	220496825	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:220496825G>A	uc002vmp.3	+	7	1216	c.947G>A	c.(946-948)CGG>CAG	p.R316Q	SLC4A3_uc002vmn.2_Missense_Mutation_p.R343Q|SLC4A3_uc002vmo.3_Missense_Mutation_p.R343Q|SLC4A3_uc010fwm.2_5'UTR|SLC4A3_uc010fwn.1_5'UTR	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	316	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AAGCTGGACCGGAGGCCTCAT	0.652		NA											4	54					0	0	0	0
UGT1A6	54578	broad.mit.edu	37	2	234602064	234602064	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr2:234602064C>G	uc002vuv.3	+	1	553	c.414C>G	c.(412-414)TTC>TTG	p.F138L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Missense_Mutation_p.F138L	NM_001072	NP_001063	P19224	UD16_HUMAN	UDP glycosyltransferase 1 family, polypeptide A6	138					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity				0		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;5.86e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000384)|Lung(119;0.00306)|LUSC - Lung squamous cell carcinoma(224;0.00702)		CCCTGAACTTCTTTAAGGAGA	0.488		NA											10	73					0	0	0	0
PSMF1	9491	broad.mit.edu	37	20	1115772	1115772	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr20:1115772A>G	uc002wel.3	+	5	542	c.374A>G	c.(373-375)AAG>AGG	p.K125R	PSMF1_uc010zpo.1_Missense_Mutation_p.K37R|PSMF1_uc002wem.3_Missense_Mutation_p.K125R|PSMF1_uc010zpp.1_Intron|PSMF1_uc002wen.3_Missense_Mutation_p.K125R|PSMF1_uc002wep.3_Missense_Mutation_p.K76R	NM_178578	NP_848693	Q92530	PSMF1_HUMAN	proteasome inhibitor subunit 1	125					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome core complex	endopeptidase inhibitor activity|protein binding				0						AGGACCTACAAGAACAGTGAG	0.552		NA											7	55					0	0	0	0
BPIL1	80341	broad.mit.edu	37	20	31608358	31608358	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr20:31608358C>A	uc002wyj.2	+	13	1353	c.1159C>A	c.(1159-1161)CTC>ATC	p.L387I		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	387						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GGATGTCCAGCTCACGGTGGC	0.617		NA											9	93					0.000673444	0.00113894	1	0
PPP1R16B	26051	broad.mit.edu	37	20	37524339	37524339	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr20:37524339G>C	uc002xje.2	+	4	642	c.453G>C	c.(451-453)AAG>AAC	p.K151N	PPP1R16B_uc010ggc.2_Missense_Mutation_p.K151N	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	151	ANK 2.				regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				ACCTGGTGAAGATCCTCGTTC	0.498		NA											5	25					0	0	0	0
ZNF512B	57473	broad.mit.edu	37	20	62597525	62597525	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr20:62597525G>A	uc002yhl.1	-	5	1057	c.1003C>T	c.(1003-1005)CGT>TGT	p.R335C		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	335					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CCTGTGGCACGAGGTGCTTTG	0.582		NA											9	62					0	0	0	0
CHEK2	11200	broad.mit.edu	37	22	29121060	29121060	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:29121060T>C	uc003adu.1	-	4	569	c.497A>G	c.(496-498)AAT>AGT	p.N166S	CHEK2_uc003ads.1_Intron|CHEK2_uc010gvh.1_Intron|CHEK2_uc010gvi.1_Missense_Mutation_p.N166S|CHEK2_uc010gvj.1_Intron|CHEK2_uc003adr.1_RNA|CHEK2_uc010gvk.1_RNA|CHEK2_uc003adt.1_Missense_Mutation_p.N209S|CHEK2_uc003adv.1_Missense_Mutation_p.N166S|CHEK2_uc003adw.1_Missense_Mutation_p.N166S|CHEK2_uc003adx.1_5'UTR|CHEK2_uc003ady.1_Missense_Mutation_p.N166S|CHEK2_uc003adz.1_Intron	NM_007194	NP_009125	O96017	CHK2_HUMAN	protein kinase CHK2 isoform a	166	FHA.				cell cycle|DNA damage checkpoint|DNA damage response, signal transduction resulting in induction of apoptosis|replicative senescence	PML body	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(17)|stomach(1)|ovary(1)|lung(1)	20						AAAGGTTCCATTGCCACTGTG	0.353		NA	F			breast 		Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|CHEK2-associated_cancer				6	76					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46652485	46652485	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46652485C>T	uc003bhh.2	-	1	6735	c.6735G>A	c.(6733-6735)GGG>GGA	p.G2245G		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	2245	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CCATTTTCTTCCCGTTGATGT	0.473		NA											10	94					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653078	46653078	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46653078G>C	uc003bhh.2	-	1	6142	c.6142C>G	c.(6142-6144)CAC>GAC	p.H2048D		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	2048	Helical; (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CTCATAATGTGATCTACCTGA	0.438		NA											6	59					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653873	46653873	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46653873C>T	uc003bhh.2	-	1	5347	c.5347G>A	c.(5347-5349)GAA>AAA	p.E1783K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1783	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GACGAGCTTTCAGGAAGAAAT	0.423		NA											19	172					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653935	46653935	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46653935C>T	uc003bhh.2	-	1	5285	c.5285G>A	c.(5284-5286)AGA>AAA	p.R1762K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1762	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GTTTAGCCATCTATAGATGTC	0.423		NA											17	115					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654045	46654045	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654045C>T	uc003bhh.2	-	1	5175	c.5175G>A	c.(5173-5175)TTG>TTA	p.L1725L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1725	Helical; (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CGATAAGGATCAACAGAAGGG	0.383		NA											8	52					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654120	46654120	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654120C>T	uc003bhh.2	-	1	5100	c.5100G>A	c.(5098-5100)AAG>AAA	p.K1700K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1700	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TGATCCTCTTCTTTCTTTTGA	0.418		NA											7	82					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654124	46654124	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654124C>T	uc003bhh.2	-	1	5096	c.5096G>A	c.(5095-5097)AGA>AAA	p.R1699K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1699	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CCTCTTCTTTCTTTTGAATAT	0.418		NA											7	87					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654251	46654251	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654251C>T	uc003bhh.2	-	1	4969	c.4969G>A	c.(4969-4971)GAG>AAG	p.E1657K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1657	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AACCTGATCTCAGTATATTTA	0.438		NA											10	80					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654407	46654407	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654407C>G	uc003bhh.2	-	1	4813	c.4813G>C	c.(4813-4815)GAC>CAC	p.D1605H		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1605	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ATTGACTTGTCATAGCCGTAA	0.393		NA											6	53					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654584	46654584	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654584C>T	uc003bhh.2	-	1	4636	c.4636G>A	c.(4636-4638)GAT>AAT	p.D1546N		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1546	Cytoplasmic (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TCCTGATCATCTTCTATGTTG	0.483		NA											33	233					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654926	46654926	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654926C>T	uc003bhh.2	-	1	4294	c.4294G>A	c.(4294-4296)GAA>AAA	p.E1432K		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1432	Helical; (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AAGACACTTTCAATTCCTATC	0.348		NA											8	61					0	0	0	0
PKDREJ	10343	broad.mit.edu	37	22	46654948	46654948	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:46654948C>T	uc003bhh.2	-	1	4272	c.4272G>A	c.(4270-4272)ATG>ATA	p.M1424I		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1424	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TCATTGATCTCATGTATTTCC	0.348		NA											8	60					0	0	0	0
CPT1B	1375	broad.mit.edu	37	22	51010730	51010730	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr22:51010730C>G	uc003bmk.3	-	11	1522	c.1360G>C	c.(1360-1362)GAC>CAC	p.D454H	CPT1B_uc003bml.2_Missense_Mutation_p.D454H|CPT1B_uc003bmm.2_Missense_Mutation_p.D454H|CPT1B_uc003bmo.2_Missense_Mutation_p.D454H|CPT1B_uc011asa.1_Missense_Mutation_p.D420H|CPT1B_uc003bmn.2_Missense_Mutation_p.D454H|CPT1B_uc011asb.1_Missense_Mutation_p.D373H|CHKB-CPT1B_uc003bmp.2_Missense_Mutation_p.D251H|uc003bmr.1_RNA	NM_001145137	NP_001138609	Q92523	CPT1B_HUMAN	carnitine palmitoyltransferase 1B isoform a	454	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;3.56e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.39e-74)|Epithelial(4;5.58e-70)|GBM - Glioblastoma multiforme(4;5.59e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.207)		AAGGATTTGTCAAACCACCTG	0.443		NA											6	38					0	0	0	0
PBRM1	55193	broad.mit.edu	37	3	52623229	52623229	+	Nonsense_Mutation	SNP	G	G	C	rs141067977	by1000genomes	TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:52623229G>C	uc003des.2	-	18	2834	c.2822C>G	c.(2821-2823)TCA>TGA	p.S941*	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Nonsense_Mutation_p.S941*|PBRM1_uc003der.2_Nonsense_Mutation_p.S909*|PBRM1_uc003det.2_Nonsense_Mutation_p.S956*|PBRM1_uc003deu.2_Nonsense_Mutation_p.S956*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.S941*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.S941*|PBRM1_uc003dey.2_Nonsense_Mutation_p.S941*|PBRM1_uc003dez.1_Nonsense_Mutation_p.S940*|PBRM1_uc003dfb.1_Nonsense_Mutation_p.S853*|PBRM1_uc003dfa.1_Nonsense_Mutation_p.S287*	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	941					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		ATGTAAGCCTGAGAGGCCTGC	0.428		NA	Mis|N|F|S|D|O		clear cell renal carcinoma|breast								13	110					0	0	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64132920	64132920	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:64132920G>C	uc003dmf.2	-	7	1832	c.1246C>G	c.(1246-1248)CTG>GTG	p.L416V		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	416						cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		AGGAGCTGCAGAGGGCTCTGG	0.612		NA											21	93					0	0	0	0
PROS1	5627	broad.mit.edu	37	3	93617301	93617301	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:93617301C>G	uc003drb.3	-	8	1181	c.840G>C	c.(838-840)AAG>AAC	p.K280N	PROS1_uc010hoo.2_Missense_Mutation_p.K149N|PROS1_uc003dqz.3_Missense_Mutation_p.K149N	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	280	EGF-like 4; calcium-binding (Potential).				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	CCTCACAACTCTTCTGATCTT	0.383		NA											5	64					0	0	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119134182	119134182	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:119134182G>A	uc003ecj.3	+	12	3938	c.3406G>A	c.(3406-3408)GAG>AAG	p.E1136K		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	1136					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GCAGGTCTCTGAGCCAGGAGA	0.532		NA											6	74					0	0	0	0
KBTBD12	166348	broad.mit.edu	37	3	127646718	127646718	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:127646718G>A	uc010hsr.2	+	2	1185	c.1182G>A	c.(1180-1182)ATG>ATA	p.M394I	KBTBD12_uc003ejy.3_Missense_Mutation_p.M1I|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Intron|KBTBD12_uc003ejz.2_Missense_Mutation_p.M394I	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	394	Kelch 1.									ovary(1)	1						GAGGACAGATGAAAATTAAAA	0.393		NA											20	146					0	0	0	0
PIK3R4	30849	broad.mit.edu	37	3	130452968	130452968	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:130452968G>C	uc003enj.2	-	4	1455	c.874C>G	c.(874-876)CAG>GAG	p.Q292E		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	292	Protein kinase.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						TGAATCATCTGAGTTACCTAT	0.348		NA											9	65					0	0	0	0
PIK3R4	30849	broad.mit.edu	37	3	130463505	130463505	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:130463505G>C	uc003enj.2	-	2	1139	c.558C>G	c.(556-558)TTC>TTG	p.F186L		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	186	Protein kinase.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						ATGTGTCAAAGAAATAATTGA	0.408		NA											11	48					0	0	0	0
ZBTB38	253461	broad.mit.edu	37	3	141163924	141163924	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:141163924G>T	uc003etw.2	+	8	3676	c.2694G>T	c.(2692-2694)GAG>GAT	p.E898D	ZBTB38_uc010hun.2_Missense_Mutation_p.E895D|ZBTB38_uc010huo.2_Missense_Mutation_p.E898D|ZBTB38_uc003ety.2_Missense_Mutation_p.E898D|ZBTB38_uc010hup.2_Missense_Mutation_p.E899D	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	898					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AGTGCATGGAGATGAGTGAAG	0.522		NA											16	49					6.72e-11	1.21e-10	1	0
AGTR1	185	broad.mit.edu	37	3	148459824	148459824	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:148459824G>A	uc003ewg.2	+	4	1448	c.1002G>A	c.(1000-1002)ATG>ATA	p.M334I	AGTR1_uc003ewh.2_Missense_Mutation_p.M334I|AGTR1_uc003ewi.2_Missense_Mutation_p.M334I|AGTR1_uc003ewj.2_Missense_Mutation_p.M334I|AGTR1_uc003ewk.2_Missense_Mutation_p.M334I	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	334	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	CAACAAAAATGAGCACGCTTT	0.403		NA											7	44					0	0	0	0
SI	6476	broad.mit.edu	37	3	164776814	164776814	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:164776814C>G	uc003fei.2	-	12	1397	c.1335G>C	c.(1333-1335)GAG>GAC	p.E445D		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	445	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGTTTCCCCTCTCATAGGTTG	0.363		NA								HNSCC(35;0.089)			3	48					0	0	0	0
HTR3C	170572	broad.mit.edu	37	3	183778119	183778119	+	Silent	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:183778119C>G	uc003fmk.2	+	9	1357	c.1323C>G	c.(1321-1323)GTC>GTG	p.V441V		NM_130770	NP_570126	Q8WXA8	5HT3C_HUMAN	5-hydroxytryptamine receptor 3 subunit C	441	Helical; Name=4; (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(143;2.33e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TCCTTACTGTCATTGTCCTCT	0.557		NA											24	183					0	0	0	0
AP2M1	1173	broad.mit.edu	37	3	183896841	183896841	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:183896841G>C	uc011bqx.1	+	3	428	c.271G>C	c.(271-273)GCC>CCC	p.A91P	AP2M1_uc003fmw.2_Missense_Mutation_p.A91P|AP2M1_uc003fmx.2_Missense_Mutation_p.A91P|AP2M1_uc003fmy.2_Missense_Mutation_p.A91P|AP2M1_uc011bqy.1_5'Flank|AP2M1_uc011bqz.1_5'Flank	NM_004068	NP_004059	Q96CW1	AP2M1_HUMAN	adaptor-related protein complex 2, mu 1 subunit	91					axon guidance|cellular membrane organization|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|clathrin coat of coated pit|cytosol|endocytic vesicle membrane|peroxisomal membrane	lipid binding|protein binding|transporter activity				0	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.92e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CGTGATGGCTGCCTACTTTGG	0.522		NA											3	130					0	0	0	0
GP5	2814	broad.mit.edu	37	3	194118031	194118031	+	Silent	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:194118031C>G	uc003ftv.1	-	2	1012	c.981G>C	c.(979-981)CTG>CTC	p.L327L		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	327	Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		GAAGCGCGCTCAGCCGCGGGC	0.726		NA											3	22					0	0	0	0
KIAA1530	57654	broad.mit.edu	37	4	1360143	1360143	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr4:1360143C>T	uc003gde.3	+	8	1659	c.1212C>T	c.(1210-1212)GAC>GAT	p.D404D	KIAA1530_uc010ibv.2_Translation_Start_Site	NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	404											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			AAGATGAGGACGATGAGGACT	0.587		NA											20	163					0	0	0	0
TBC1D1	23216	broad.mit.edu	37	4	38134714	38134714	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr4:38134714A>G	uc003gtb.2	+	19	3485	c.3142A>G	c.(3142-3144)ATG>GTG	p.M1048V	TBC1D1_uc011byd.1_Missense_Mutation_p.M1039V|TBC1D1_uc010ifd.2_Missense_Mutation_p.M835V|TBC1D1_uc003gtd.2_Missense_Mutation_p.M60V	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	1048						nucleus	Rab GTPase activator activity			ovary(1)	1						GGTATTTGAAATGGACATCGC	0.423		NA											8	51					0	0	0	0
PDS5A	23244	broad.mit.edu	37	4	39910122	39910122	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr4:39910122T>C	uc003guv.3	-	11	1666	c.1126A>G	c.(1126-1128)ATT>GTT	p.I376V	PDS5A_uc010ifo.2_Missense_Mutation_p.I336V|PDS5A_uc003guw.3_Missense_Mutation_p.I376V	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	376					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						TCATGACGAATAGCTTCTTCT	0.353		NA											16	100					0	0	0	0
MUC7	4589	broad.mit.edu	37	4	71346858	71346858	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr4:71346858C>A	uc011cat.1	+	4	685	c.397C>A	c.(397-399)CCC>ACC	p.P133T	MUC7_uc011cau.1_Missense_Mutation_p.P133T|MUC7_uc003hfj.2_Missense_Mutation_p.P133T|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	133	Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			GACTTTTCTTCCCCAGAATGC	0.448		NA											13	106					4.38e-07	7.69e-07	1	0
KIAA1109	84162	broad.mit.edu	37	4	123230492	123230492	+	Silent	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr4:123230492A>G	uc003ieh.2	+	57	10170	c.10125A>G	c.(10123-10125)GCA>GCG	p.A3375A	KIAA1109_uc003iel.1_Silent_p.A1310A	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3375					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCATCACTGCATGCTCTTCAG	0.378		NA											11	62					0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155254167	155254167	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr4:155254167C>T	uc003inw.2	-	9	1696	c.1696G>A	c.(1696-1698)GCC>ACC	p.A566T	DCHS2_uc003inx.2_Missense_Mutation_p.A1065T	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	566	Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ACCAGCAGGGCTGCCTGAGGA	0.607		NA											9	84					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187541760	187541760	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr4:187541760C>A	uc003izf.2	-	10	6168	c.5980G>T	c.(5980-5982)GAG>TAG	p.E1994*		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1994	Extracellular (Potential).|Cadherin 18.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GTTTCGGCCTCGGTGGAATTC	0.418		NA								HNSCC(5;0.00058)			101	237					6.66e-36	1.21e-35	1	0
GCNT4	51301	broad.mit.edu	37	5	74325189	74325189	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr5:74325189T>C	uc003kdn.2	-	1	1536	c.674A>G	c.(673-675)AAC>AGC	p.N225S		NM_016591	NP_057675	Q9P109	GCNT4_HUMAN	core 2 beta-1,6-N-acetylglucosaminyltransferase	225	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;8.44e-57)		CCCACACAAGTTGATAACATA	0.418		NA											4	78					0	0	0	0
CMYA5	202333	broad.mit.edu	37	5	79030301	79030301	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr5:79030301C>G	uc003kgc.2	+	2	5785	c.5713C>G	c.(5713-5715)CAA>GAA	p.Q1905E		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1905						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TGTGGCTAGTCAACACGAACA	0.468		NA											7	42					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90136535	90136535	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr5:90136535G>C	uc003kju.2	+	78	16848	c.16752G>C	c.(16750-16752)GAG>GAC	p.E5584D	GPR98_uc003kjt.2_Missense_Mutation_p.E3290D|GPR98_uc003kjw.2_Missense_Mutation_p.E1245D	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5584	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TAACGCCAGAGACAGGATCTT	0.428		NA											28	190					0	0	0	0
IRF1	3659	broad.mit.edu	37	5	131819736	131819736	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr5:131819736G>A	uc003kxa.2	-	10	1119	c.885C>T	c.(883-885)TTC>TTT	p.F295F	C5orf56_uc010jds.1_Intron|IRF1_uc003kxd.2_Intron|IRF1_uc003kxb.2_Silent_p.F295F	NM_002198	NP_002189	P10914	IRF1_HUMAN	interferon regulatory factor 1	295					blood coagulation|cellular response to mechanical stimulus|interferon-gamma-mediated signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleoplasm					0		all_cancers(142;0.026)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	LUAD - Lung adenocarcinoma(142;0.247)		TCAGATCTGTGAAGACACGCT	0.582		NA											5	59					0	0	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139885401	139885401	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr5:139885401G>C	uc003lfs.1	+	18	3479	c.3355G>C	c.(3355-3357)GAA>CAA	p.E1119Q	ANKHD1_uc003lfq.1_Missense_Mutation_p.E1138Q|ANKHD1_uc003lfr.2_Missense_Mutation_p.E1119Q|ANKHD1_uc003lft.1_Missense_Mutation_p.E330Q|ANKHD1_uc003lfu.1_Missense_Mutation_p.E599Q|ANKHD1_uc003lfv.1_Missense_Mutation_p.E196Q	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1119						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCACAGTCTGAACGAACTAA	0.393		NA											17	149					0	0	0	0
SLC26A2	1836	broad.mit.edu	37	5	149357721	149357721	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr5:149357721G>T	uc003lrh.2	+	2	774	c.506G>T	c.(505-507)TGC>TTC	p.C169F		NM_000112	NP_000103	P50443	S26A2_HUMAN	solute carrier family 26 member 2	169	Helical; (Potential).					integral to plasma membrane|membrane fraction	secondary active sulfate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GGAGTACTGTGCCTTATGATT	0.448		NA											18	96					3.41e-10	6.12e-10	1	0
MAS1L	116511	broad.mit.edu	37	6	29454874	29454874	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr6:29454874G>A	uc011dlq.1	-	1	806	c.806C>T	c.(805-807)TCG>TTG	p.S269L		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	269	Helical; Name=6; (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						CATGGGGGCCGAGATCTGCAC	0.512		NA											7	37					0	0	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32974913	32974913	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr6:32974913G>A	uc003ocr.2	-	4	769	c.693C>T	c.(691-693)GGC>GGT	p.G231G	HLA-DOA_uc010juj.2_Intron|HLA-DOA_uc010jui.2_3'UTR	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	231	Helical; (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						CCACGAGGAAGCCCACCAGGC	0.627		NA											17	107					0	0	0	0
KLHL31	401265	broad.mit.edu	37	6	53516703	53516703	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr6:53516703A>G	uc003pcb.3	-	3	1739	c.1598T>C	c.(1597-1599)CTC>CCC	p.L533P	uc003pcc.1_Missense_Mutation_p.E32G	NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	533	Kelch 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					CTCCACGGTGAGCACGTCCAC	0.736		NA											3	17					0	0	0	0
TRMT11	60487	broad.mit.edu	37	6	126334221	126334221	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr6:126334221C>T	uc003qam.2	+	11	1234	c.1113C>T	c.(1111-1113)GTC>GTT	p.V371V	TRMT11_uc003qan.2_RNA|TRMT11_uc010kev.2_Silent_p.V371V	NM_001031712	NP_001026882	Q7Z4G4	TRM11_HUMAN	tRNA methyltransferase 11	371					tRNA processing		methyltransferase activity|nucleic acid binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0356)		GAAGACTAGTCTATTGGTTAC	0.343		NA											7	30					0	0	0	0
ARID1B	57492	broad.mit.edu	37	6	157505453	157505453	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr6:157505453A>G	uc003qqn.2	+	13	3532	c.3380A>G	c.(3379-3381)TAT>TGT	p.Y1127C	ARID1B_uc003qqo.2_Missense_Mutation_p.Y1087C|ARID1B_uc003qqp.2_Missense_Mutation_p.Y1074C|ARID1B_uc010kjl.2_Missense_Mutation_p.Y272C	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1132	ARID.				chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		AAAAAGCAGTATATTCAGTAC	0.517		NA											13	53					0	0	0	0
TULP4	56995	broad.mit.edu	37	6	158924402	158924402	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr6:158924402C>T	uc003qrf.2	+	13	5064	c.3707C>T	c.(3706-3708)TCC>TTC	p.S1236F	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1236					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CCCAGCCTCTCCTATTGCACC	0.607		NA											14	85					0	0	0	0
DNAH11	8701	broad.mit.edu	37	7	21775391	21775391	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:21775391C>T	uc003svc.2	+	47	7626	c.7595C>T	c.(7594-7596)GCA>GTA	p.A2532V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2532	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GACACATTGGCAAGTCTCTCT	0.413		NA							Kartagener_syndrome				9	88					0	0	0	0
BMPER	168667	broad.mit.edu	37	7	34125426	34125426	+	Silent	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:34125426C>G	uc011kap.1	+	13	1581	c.1467C>G	c.(1465-1467)CTC>CTG	p.L489L		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	489	VWFD.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CGCCGCATCTCAAGGGCAAGC	0.433		NA											9	43					0	0	0	0
SUN3	256979	broad.mit.edu	37	7	48035654	48035654	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:48035654C>G	uc003tof.2	-	8	764	c.667G>C	c.(667-669)GAA>CAA	p.E223Q	SUN3_uc010kyq.2_Missense_Mutation_p.E123Q|SUN3_uc003tog.2_Missense_Mutation_p.E223Q|SUN3_uc011kcf.1_Missense_Mutation_p.E211Q	NM_152782	NP_689995	Q8TAQ9	SUN3_HUMAN	Sad1 and UNC84 domain containing 1	223	SUN.					integral to membrane				central_nervous_system(1)	1						GGAGGCATTTCATGATTTAGG	0.284		NA											11	73					0	0	0	0
ELN	2006	broad.mit.edu	37	7	73466086	73466086	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:73466086G>C	uc003tzw.2	+	16	897	c.806G>C	c.(805-807)GGA>GCA	p.G269A	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_RNA|ELN_uc011kfe.1_Missense_Mutation_p.G238A|ELN_uc003tzn.2_Missense_Mutation_p.G269A|ELN_uc003tzz.2_Missense_Mutation_p.G233A|ELN_uc003tzo.2_Missense_Mutation_p.G255A|ELN_uc003tzp.2_Missense_Mutation_p.G225A|ELN_uc003tzq.2_Missense_Mutation_p.G152A|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.G269A|ELN_uc003tzt.2_Missense_Mutation_p.G274A|ELN_uc003tzu.2_Missense_Mutation_p.G274A|ELN_uc003tzv.2_Missense_Mutation_p.G259A|ELN_uc003tzx.2_Missense_Mutation_p.G259A|ELN_uc011kff.1_Missense_Mutation_p.G269A|ELN_uc003tzy.2_Missense_Mutation_p.G264A	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	269	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	ACAGGTGCTGGAGCAGCCGGA	0.597		NA	T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome				OREG0018112	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	34					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964913	88964913	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:88964913G>A	uc011khi.1	+	4	3155	c.2617G>A	c.(2617-2619)GAG>AAG	p.E873K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	873						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GAGAAATCAAGAGTCTTTGGG	0.428		NA								HNSCC(36;0.09)			8	60					0	0	0	0
CCDC132	55610	broad.mit.edu	37	7	92987685	92987685	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:92987685C>G	uc003umo.2	+	28	2960	c.2832C>G	c.(2830-2832)ATC>ATG	p.I944M	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.I914M|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.I664M	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	944											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			GATCCCATATCAATAAGAAAG	0.383		NA											12	77					0	0	0	0
ZAN	7455	broad.mit.edu	37	7	100345255	100345255	+	Silent	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:100345255A>G	uc003uwj.2	+	9	1179	c.1014A>G	c.(1012-1014)GGA>GGG	p.G338G	ZAN_uc003uwk.2_Silent_p.G338G|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	338	MAM 2.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CAGCCGTGGGACGGATACAGG	0.448		NA											3	58					0	0	0	0
GPR37	2861	broad.mit.edu	37	7	124404013	124404013	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:124404013T>C	uc003vli.2	-	1	1669	c.1018A>G	c.(1018-1020)ATA>GTA	p.I340V		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	340	Helical; Name=3; (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						ATTACCTCTATATAGGGCACG	0.498		NA											34	211					0	0	0	0
POT1	25913	broad.mit.edu	37	7	124503478	124503479	+	Missense_Mutation	DNP	GC	GC	AA			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:124503478_124503479GC>AA	uc003vlm.2	-	8	1072_1073	c.471_472GC>TT	c.(469-474)CAGCCA>CATTCA	p.157_158QP>HS	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.26_27QP>HS|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	157_158					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						TACTGCATTGGCTGAACATCAC	0.406		NA											11	79					0	0	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138429966	138429966	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr7:138429966G>C	uc003vuf.2	-	13	1618	c.1380C>G	c.(1378-1380)ATC>ATG	p.I460M	ATP6V0A4_uc003vug.2_Missense_Mutation_p.I460M|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.I460M	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	460	Helical; (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						AACCCGTGTAGATGGAGAAGA	0.488		NA											9	88					0	0	0	0
KCNB2	9312	broad.mit.edu	37	8	73849039	73849039	+	Silent	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr8:73849039C>T	uc003xzb.2	+	3	2037	c.1449C>T	c.(1447-1449)GAC>GAT	p.D483D		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	483	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACTCCGCCGACGATAATCACC	0.512		NA											13	111					0	0	0	0
RBM12B	389677	broad.mit.edu	37	8	94746869	94746869	+	Silent	SNP	A	A	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr8:94746869A>G	uc003yfz.2	-	3	1963	c.1770T>C	c.(1768-1770)CCT>CCC	p.P590P		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	590							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			CCTCCTCAGAAGGCCGCCTGA	0.617		NA											21	81					0	0	0	0
ZC3H3	23144	broad.mit.edu	37	8	144620188	144620188	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr8:144620188C>T	uc003yyd.2	-	2	1378	c.1349G>A	c.(1348-1350)AGA>AAA	p.R450K		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	450					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			GCTGCTGCGTCTCCGGATGAT	0.617		NA											9	85					0	0	0	0
ZNF7	7553	broad.mit.edu	37	8	146067676	146067676	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr8:146067676C>G	uc003zeg.3	+	5	1321	c.1184C>G	c.(1183-1185)TCA>TGA	p.S395*	ZNF7_uc010mge.2_Nonsense_Mutation_p.S406*|ZNF7_uc011lln.1_Nonsense_Mutation_p.S299*|ZNF7_uc003zeh.2_Intron|ZNF7_uc003zek.3_Nonsense_Mutation_p.S299*|COMMD5_uc003zel.1_Intron	NM_003416	NP_003407	P17097	ZNF7_HUMAN	zinc finger protein 7	395					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.0812)|Ovarian(118;0.0822)|Acute lymphoblastic leukemia(644;0.143)	Epithelial(56;8.75e-39)|OV - Ovarian serous cystadenocarcinoma(54;1.13e-38)|all cancers(56;8.48e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;2.11e-07)		CTAAAAGCCTCAGACAGTCCA	0.493		NA											7	79					0	0	0	0
KANK1	23189	broad.mit.edu	37	9	711776	711776	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:711776G>A	uc003zgl.1	+	7	1659	c.1010G>A	c.(1009-1011)CGG>CAG	p.R337Q	KANK1_uc003zgm.2_Missense_Mutation_p.R337Q|KANK1_uc003zgn.1_Missense_Mutation_p.R337Q|KANK1_uc003zgo.1_Missense_Mutation_p.R337Q|KANK1_uc003zgp.1_Missense_Mutation_p.R337Q|KANK1_uc003zgq.2_Missense_Mutation_p.R179Q|KANK1_uc003zgr.1_Missense_Mutation_p.R179Q|KANK1_uc003zgs.1_Missense_Mutation_p.R179Q	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	337					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		CAGCTCTCCCGGGCCCGAAGA	0.537		NA											8	91					0	0	0	0
TAF1L	138474	broad.mit.edu	37	9	32632974	32632974	+	Silent	SNP	G	G	A	rs146604611	byFrequency	TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:32632974G>A	uc003zrg.1	-	1	2694	c.2604C>T	c.(2602-2604)TGC>TGT	p.C868C	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	868					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGAAGTCAGCGCAGAGCTTTA	0.468		NA											20	154					0	0	0	0
UNC13B	10497	broad.mit.edu	37	9	35231142	35231142	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:35231142G>A	uc003zwq.2	+	3	370	c.78G>A	c.(76-78)CTG>CTA	p.L26L	UNC13B_uc010mkl.1_Silent_p.L26L|UNC13B_uc003zwr.2_Silent_p.L26L	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	26	C2 1.				excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			ATGTGACCCTGAAAGTACAGA	0.393		NA											5	33					0	0	0	0
ZNF782	158431	broad.mit.edu	37	9	99581236	99581236	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:99581236G>A	uc004awp.1	-	6	1350	c.1069C>T	c.(1069-1071)CAG>TAG	p.Q357*	ZNF782_uc011lup.1_Nonsense_Mutation_p.Q225*	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	357	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				TGAACCTTCTGATGTACACTG	0.418		NA											31	200					0	0	0	0
RABEPK	10244	broad.mit.edu	37	9	127990196	127990196	+	Silent	SNP	G	G	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:127990196G>T	uc004bpi.2	+	7	707	c.534G>T	c.(532-534)CTG>CTT	p.L178L	RABEPK_uc004bpj.2_Silent_p.L127L|RABEPK_uc004bpk.2_Silent_p.L178L|RABEPK_uc004bpl.1_Silent_p.L127L|RABEPK_uc004bpm.2_Silent_p.L178L	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	178	Kelch 3.				receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						TAGACACTCTGACCTGGTCAC	0.483		NA											10	68					9.7e-10	1.74e-09	1	0
SLC25A25	114789	broad.mit.edu	37	9	130863479	130863479	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:130863479G>C	uc004bte.2	+	2	293	c.264G>C	c.(262-264)AAG>AAC	p.K88N	SLC25A25_uc004btb.2_Missense_Mutation_p.K122N|SLC25A25_uc004btc.2_Missense_Mutation_p.K108N|SLC25A25_uc004btd.2_Missense_Mutation_p.K108N|SLC25A25_uc004btf.2_5'UTR	NM_052901	NP_443133	Q6KCM7	SCMC2_HUMAN	solute carrier family 25, member 25 isoform a	88	EF-hand 2.|Mitochondrial intermembrane (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding				0						TGGTGTTTAAGAGTTTGGACA	0.512		NA											13	130					0	0	0	0
GFI1B	8328	broad.mit.edu	37	9	135862790	135862790	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:135862790G>C	uc004ccg.2	+	3	373	c.222G>C	c.(220-222)AGG>AGC	p.R74S	GFI1B_uc010mzy.2_Missense_Mutation_p.R74S	NM_004188	NP_004179	Q5VTD9	GFI1B_HUMAN	growth factor independent 1B transcription	74					cell proliferation|chromatin modification|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;9.04e-07)|Epithelial(140;1.17e-05)		ACTTGGCCAGGATGGCCCCGG	0.617		NA											10	35					0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139412690	139412690	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:139412690G>A	uc004chz.2	-	7	1154	c.1154C>T	c.(1153-1155)TCC>TTC	p.S385F		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	385	Extracellular (Potential).|EGF-like 10.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GTCGCAGTTGGAGCCCTCGTT	0.672		NA	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			7	9					0	0	0	0
ARSD	414	broad.mit.edu	37	X	2825395	2825395	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:2825395T>C	uc004cqy.2	-	10	1775	c.1699A>G	c.(1699-1701)ATC>GTC	p.I567V	ARSD_uc004cqz.1_RNA	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	567						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TTCCACAGGATGTTGCTCATG	0.617		NA											6	27					0	0	0	0
BEND2	139105	broad.mit.edu	37	X	18192280	18192280	+	Silent	SNP	A	A	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:18192280A>C	uc004cyj.3	-	12	2005	c.1851T>G	c.(1849-1851)TCT>TCG	p.S617S	BEND2_uc010nfb.2_Silent_p.S526S	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	617										ovary(3)|kidney(1)|central_nervous_system(1)	5						GAAACATCCAAGAACAGCCTT	0.438		NA											25	58					0	0	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19702122	19702122	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:19702122T>A	uc004czm.2	-	6	861	c.545A>T	c.(544-546)GAG>GTG	p.E182V	SH3KBP1_uc004czl.2_Missense_Mutation_p.E145V	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	182					apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						CCCATCACTCTCGGAGCCTGT	0.537		NA											8	38					0	0	0	0
HUWE1	10075	broad.mit.edu	37	X	53617986	53617986	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:53617986G>A	uc004dsp.2	-	34	4471	c.4069C>T	c.(4069-4071)CCT>TCT	p.P1357S	HUWE1_uc004dsn.2_Missense_Mutation_p.P182S	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1357					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						ATGATTGGAGGAGGGTGGGTT	0.488		NA											4	20					0	0	0	0
HUWE1	10075	broad.mit.edu	37	X	53619384	53619384	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:53619384G>C	uc004dsp.2	-	33	4348	c.3946C>G	c.(3946-3948)CAA>GAA	p.Q1316E	HUWE1_uc004dsn.2_Missense_Mutation_p.Q141E	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1316	UBA.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TGGTTGACTTGAGGTTCCCGG	0.537		NA											18	52					0	0	0	0
ZMAT1	84460	broad.mit.edu	37	X	101152892	101152892	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:101152892A>T	uc011mrl.1	-	5	765	c.454T>A	c.(454-456)TTA>ATA	p.L152I	ZMAT1_uc004ein.2_5'UTR|ZMAT1_uc011mrm.1_5'UTR	NM_001011657	NP_001011657	Q5H9K5	ZMAT1_HUMAN	zinc finger, matrin type 1 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus	zinc ion binding			ovary(1)	1						TCCTCCATTAATTGCTTCAGT	0.403		NA											10	27					0	0	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135862907	135862907	+	Silent	SNP	G	G	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:135862907G>A	uc004fab.2	-	1	597	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	45	CH.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					TGAGTCTGTTGATCAGTTTGC	0.433		NA											9	114					0	0	0	0
DAAM1	23002	broad.mit.edu	37	14	59792758	59792758	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr14:59792758delT	uc001xdz.1	+	10	1262	c.1137delT	c.(1135-1137)CATfs	p.H379fs	DAAM1_uc001xea.1_Frame_Shift_Del_p.H379fs|DAAM1_uc001xeb.1_Frame_Shift_Del_p.H379fs	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	379	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		CTTACCCGCATTTCATGTCCA	0.443		NA											7	50	---	---	---	---	NA	NA	NA	NA
THRA	7067	broad.mit.edu	37	17	38241015	38241022	+	Frame_Shift_Del	DEL	CATCGCAG	CATCGCAG	-	rs11545238		TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr17:38241015_38241022delCATCGCAG	uc002htw.2	+	6	1006_1013	c.523_530delCATCGCAG	c.(523-531)CATCGCAGCfs	p.H175fs	THRA_uc010cwp.1_Frame_Shift_Del_p.H175fs|THRA_uc002htv.2_Frame_Shift_Del_p.H175fs|THRA_uc002htx.2_Frame_Shift_Del_p.H175fs	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	175_177					negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	CACAGAGGCCCATCGCAGCACCAATGCC	0.601		NA											14	186	---	---	---	---	NA	NA	NA	NA
ASXL1	171023	broad.mit.edu	37	20	31022294	31022294	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr20:31022294delA	uc002wxs.2	+	12	2205	c.1779delA	c.(1777-1779)ATAfs	p.I593fs	ASXL1_uc010geb.2_Frame_Shift_Del_p.I484fs	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	593					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding	p.Q592fs*5(1)		haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						CTTACCAGATATGCCCCCGGA	0.532		NA	F|N|Mis		MDS|CMML								11	91	---	---	---	---	NA	NA	NA	NA
IL1RAP	3556	broad.mit.edu	37	3	190362120	190362121	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr3:190362120_190362121insA	uc003fsm.1	+	10	1341_1342	c.1135_1136insA	c.(1135-1137)CATfs	p.H379fs	IL1RAP_uc010hzg.1_Frame_Shift_Ins_p.H379fs|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Frame_Shift_Ins_p.H379fs|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Frame_Shift_Ins_p.H379fs	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	379	Helical; (Potential).				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		TGTTGTTTACCATGTTTACTGG	0.416		NA											20	47	---	---	---	---	NA	NA	NA	NA
NOTCH1	4851	broad.mit.edu	37	9	139402819	139402820	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chr9:139402819_139402820delCA	uc004chz.2	-	20	3189_3190	c.3189_3190delTG	c.(3187-3192)TGTGACfs	p.C1063fs	NOTCH1_uc004cia.1_Frame_Shift_Del_p.C293fs	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1063_1064	Extracellular (Potential).|EGF-like 28.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GGCGAGGAGTCACACCAGTGCA	0.658		NA	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			7	237	---	---	---	---	NA	NA	NA	NA
TCEAL3	85012	broad.mit.edu	37	X	102864119	102864120	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CV-7089-01A-11D-2012-08	TCGA-CV-7089-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	125ccb76-bf8d-4ce7-a04c-4424d6da0322	41d9b9bd-e0fd-4abc-ad29-41ca136e3e0a	g.chrX:102864119_102864120insA	uc004ekq.2	+	3	389_390	c.127_128insA	c.(127-129)GAAfs	p.E43fs	TCEAL3_uc004ekr.2_Frame_Shift_Ins_p.E43fs	NM_001006933	NP_001006934	Q969E4	TCAL3_HUMAN	transcription elongation factor A (SII)-like 3	43	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						ggggaagacagaatgcgaggga	0.149		NA											16	33	---	---	---	---	NA	NA	NA	NA
