Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
KTI12	112970	broad.mit.edu	37	1	52498549	52498549	+	Silent	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:52498549C>A	uc001ctj.1	-	1	924	c.885G>T	c.(883-885)GGG>GGT	p.G295G	TXNDC12_uc001cti.2_Intron	NM_138417	NP_612426	Q96EK9	KTI12_HUMAN	KTI12 homolog, chromatin associated	295							ATP binding			central_nervous_system(2)	2						TGAGCAAGTCCCCGGGGACAG	0.597		NA											58	45					2.12e-23	4.35e-23	1	0
DPYD	1806	broad.mit.edu	37	1	97771778	97771778	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:97771778G>C	uc001drv.2	-	17	2271	c.2134C>G	c.(2134-2136)CCA>GCA	p.P712A		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	712					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GTGACATTTGGGGTCAGCTTG	0.448		NA											34	146					0	0	0	0
AMY2A	279	broad.mit.edu	37	1	104160645	104160645	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:104160645G>T	uc001dut.2	+	2	302	c.238G>T	c.(238-240)GTT>TTT	p.V80F	AMY2A_uc010ouq.1_Missense_Mutation_p.V80F	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	80					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	ATACCAACCAGTTAGCTATAA	0.353		NA											54	76					2.27e-33	4.71e-33	1	0
YY1AP1	55249	broad.mit.edu	37	1	155629472	155629472	+	Silent	SNP	T	T	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:155629472T>A	uc001fln.2	-	11	2391	c.2367A>T	c.(2365-2367)ACA>ACT	p.T789T	YY1AP1_uc001flg.2_Silent_p.T528T|YY1AP1_uc010pgg.1_Silent_p.T628T|YY1AP1_uc010pgh.1_Silent_p.T732T|YY1AP1_uc010pgi.1_Silent_p.T881T|YY1AP1_uc001flh.2_Silent_p.T861T|YY1AP1_uc009wqt.2_Silent_p.T712T|YY1AP1_uc001flk.2_Silent_p.T732T|YY1AP1_uc001fll.2_Silent_p.T743T|YY1AP1_uc009wqv.2_Silent_p.T460T|YY1AP1_uc001flm.2_Silent_p.T732T|YY1AP1_uc001fli.2_Silent_p.T743T|YY1AP1_uc009wqu.2_Silent_p.T576T|YY1AP1_uc001flj.2_Silent_p.T723T|YY1AP1_uc009wqw.2_Silent_p.T712T|YY1AP1_uc001flo.2_Silent_p.T677T|YY1AP1_uc001flp.2_Silent_p.T743T	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	789					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					TGATTTCCTCTGTAGCATCTT	0.378		NA											7	213					0	0	0	0
SEMA4A	64218	broad.mit.edu	37	1	156142765	156142765	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:156142765G>A	uc001fnl.2	+	11	1387	c.1283G>A	c.(1282-1284)GGG>GAG	p.G428E	SEMA4A_uc009wrq.2_Missense_Mutation_p.G428E|SEMA4A_uc001fnm.2_Missense_Mutation_p.G428E|SEMA4A_uc001fnn.2_Missense_Mutation_p.G296E|SEMA4A_uc001fno.2_Missense_Mutation_p.G428E	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	428	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					GGCCTTGATGGGCACAGCCAT	0.577		NA											11	41					0	0	0	0
UCK2	7371	broad.mit.edu	37	1	165860556	165860556	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:165860556C>G	uc001gdp.2	+	3	534	c.353C>G	c.(352-354)TCC>TGC	p.S118C	UCK2_uc010plb.1_Missense_Mutation_p.P28A	NM_012474	NP_036606	Q9BZX2	UCK2_HUMAN	uridine-cytidine kinase 2	118					pyrimidine base metabolic process|pyrimidine nucleoside salvage	cytosol	ATP binding|phosphotransferase activity, alcohol group as acceptor|uridine kinase activity			ovary(1)	1	all_hematologic(923;0.048)|Acute lymphoblastic leukemia(8;0.155)					GTCTCCCATTCCCGGTAAGTG	0.502		NA											7	20					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	186158872	186158872	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:186158872G>A	uc001grq.1	+	107	16999	c.16770G>A	c.(16768-16770)GTG>GTA	p.V5590V	HMCN1_uc001grs.1_Silent_p.V1042V	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5590					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGAAAGGAGTGGTGTATACAA	0.493		NA											19	32					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215847971	215847971	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:215847971C>T	uc001hku.1	-	63	13669	c.13282G>A	c.(13282-13284)GGT>AGT	p.G4428S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4428	Extracellular (Potential).|Fibronectin type-III 29.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCTGTGCAACCTCCATTCGTG	0.512		NA								HNSCC(13;0.011)			4	53					0	0	0	0
TGFB2	7042	broad.mit.edu	37	1	218520300	218520300	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:218520300C>T	uc001hlm.2	+	1	910	c.257C>T	c.(256-258)GCG>GTG	p.A86V	TGFB2_uc001hll.2_Missense_Mutation_p.A86V|TGFB2_uc001hln.2_Missense_Mutation_p.A86V|TGFB2_uc010pue.1_RNA|TGFB2_uc001hlo.2_RNA	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	86					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		AGCCGGAGGGCGGCCGCCTGC	0.587		NA											13	21					0	0	0	0
EPHX1	2052	broad.mit.edu	37	1	226033041	226033041	+	Missense_Mutation	SNP	G	G	A	rs2234701		TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:226033041G>A	uc001hpk.2	+	9	1441	c.1361G>A	c.(1360-1362)CGG>CAG	p.R454Q	EPHX1_uc001hpl.2_Missense_Mutation_p.R454Q	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1	454					aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					GTGCTGGAGCGGCAATGACCC	0.607		NA											11	23					0	0	0	0
ACTN2	88	broad.mit.edu	37	1	236911018	236911018	+	Silent	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:236911018T>C	uc001hyf.2	+	13	1662	c.1458T>C	c.(1456-1458)ATT>ATC	p.I486I	ACTN2_uc001hyg.2_Silent_p.I278I|ACTN2_uc009xgi.1_Silent_p.I486I|ACTN2_uc010pxu.1_Silent_p.I175I|ACTN2_uc001hyh.2_Silent_p.I174I	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	486	Spectrin 2.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GCCAGAAAATTTGTGACCAGT	0.408		NA											3	29					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237675051	237675051	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:237675051G>A	uc001hyl.1	+	24	2902	c.2782G>A	c.(2782-2784)GAG>AAG	p.E928K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	928	Cytoplasmic (By similarity).|1.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCCTGAACAGGAGCGCAATTA	0.403		NA											3	12					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237813233	237813233	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:237813233C>T	uc001hyl.1	+	50	7689	c.7569C>T	c.(7567-7569)GCC>GCT	p.A2523A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2523	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTTGCACAGCCGTCTTGCCAT	0.463		NA											41	118					0	0	0	0
ZP4	57829	broad.mit.edu	37	1	238050710	238050710	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:238050710G>C	uc001hym.2	-	5	705	c.705C>G	c.(703-705)TTC>TTG	p.F235L	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	235	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			ATGGAAACTGGAACAGAACAA	0.522		NA											12	170					0	0	0	0
CHRM3	1131	broad.mit.edu	37	1	240071149	240071149	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:240071149G>A	uc001hyp.2	+	5	1177	c.398G>A	c.(397-399)CGA>CAA	p.R133Q		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	133	Extracellular (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	ATCATGAATCGATGGGCCTTA	0.473		NA											25	63					0	0	0	0
PLD5	200150	broad.mit.edu	37	1	242451674	242451674	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:242451674G>A	uc001hzn.1	-	3	612	c.485C>T	c.(484-486)TCA>TTA	p.S162L	PLD5_uc001hzl.3_Missense_Mutation_p.S100L|PLD5_uc001hzm.3_Intron|PLD5_uc001hzo.1_Missense_Mutation_p.S70L			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	162						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			CTGACATGCTGATGGATGAGT	0.428		NA											12	64					0	0	0	0
CNST	163882	broad.mit.edu	37	1	246810610	246810610	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:246810610C>T	uc001ibp.2	+	9	1485	c.1107C>T	c.(1105-1107)GCC>GCT	p.A369A	CNST_uc001ibo.3_Silent_p.A369A	NM_152609	NP_689822	Q6PJW8	CNST_HUMAN	hypothetical protein LOC163882 isoform 1	369					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding				0						GCGCTGAAGCCACGTTAGCGC	0.587		NA									OREG0014367	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	97					0	0	0	0
OR2B11	127623	broad.mit.edu	37	1	247614634	247614634	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:247614634G>A	uc010pyx.1	-	1	651	c.651C>T	c.(649-651)CTC>CTT	p.L217L		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AGAGAAGGATGAGAGCCAGGG	0.582		NA											7	50					0	0	0	0
OR2W3	343171	broad.mit.edu	37	1	248059699	248059699	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:248059699G>A	uc001idp.1	+	3	1080	c.811G>A	c.(811-813)GGC>AGC	p.G271S	OR2W3_uc010pzb.1_Missense_Mutation_p.G271S	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCAGGACCAGGGCATGTTCCT	0.532		NA											24	80					0	0	0	0
MYO3A	53904	broad.mit.edu	37	10	26243891	26243891	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr10:26243891T>A	uc001isn.2	+	4	617	c.257T>A	c.(256-258)TTT>TAT	p.F86Y	MYO3A_uc009xko.1_Missense_Mutation_p.F86Y|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.F86Y|MYO3A_uc001ism.2_Missense_Mutation_p.F86Y	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	86	Protein kinase.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GGGATATACTTTAAGAAGGAT	0.373		NA											6	82					0	0	0	0
ZEB1	6935	broad.mit.edu	37	10	31810429	31810429	+	Silent	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr10:31810429A>G	uc001ivs.3	+	7	2229	c.2166A>G	c.(2164-2166)ACA>ACG	p.T722T	ZEB1_uc001ivr.3_Silent_p.T504T|ZEB1_uc010qee.1_Silent_p.T504T|ZEB1_uc010qef.1_Silent_p.T504T|ZEB1_uc009xlj.1_Silent_p.T648T|ZEB1_uc010qeg.1_Silent_p.T581T|ZEB1_uc009xlk.1_Silent_p.T504T|ZEB1_uc001ivt.3_Silent_p.T504T|ZEB1_uc001ivu.3_Silent_p.T723T|ZEB1_uc001ivv.3_Silent_p.T702T|ZEB1_uc010qeh.1_Silent_p.T655T|ZEB1_uc009xlo.1_Silent_p.T705T|ZEB1_uc009xlp.2_Silent_p.T706T	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	722					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ACTTGTACACAGCTGAGGGTG	0.438		NA											7	41					0	0	0	0
DKK1	22943	broad.mit.edu	37	10	54074846	54074846	+	Splice_Site	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr10:54074846G>T	uc001jjr.2	+	2	560	c.406_splice	c.e2+1	p.G136_splice	uc001jjq.1_5'Flank|uc009xox.1_5'Flank	NM_012242	NP_036374	O94907	DKK1_HUMAN	dickkopf homolog 1 precursor						negative regulation of peptidyl-serine phosphorylation|negative regulation of protein complex assembly|negative regulation of transcription from RNA polymerase II promoter|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization	extracellular space|plasma membrane	growth factor activity|low-density lipoprotein particle receptor binding|receptor antagonist activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						TGCAAAAATGGTGAGTCCTGA	0.587		NA											6	37					3.6e-05	6.58e-05	1	0
GRID1	2894	broad.mit.edu	37	10	87407143	87407143	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr10:87407143T>G	uc001kdl.1	-	13	2110	c.2009A>C	c.(2008-2010)GAC>GCC	p.D670A	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Missense_Mutation_p.D241A|uc001kdm.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	670	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TTTGGACAGGTCCTGGAAAGT	0.522		NA								Multiple Myeloma(13;0.14)			14	153					0	0	0	0
IFIT5	24138	broad.mit.edu	37	10	91177111	91177111	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr10:91177111C>T	uc010qnh.1	+	2	386	c.155C>T	c.(154-156)GCT>GTT	p.A52V	LIPA_uc001kgb.3_5'Flank|LIPA_uc001kgc.3_5'Flank|IFIT5_uc010qng.1_Missense_Mutation_p.A52V	NM_012420	NP_036552	Q13325	IFIT5_HUMAN	interferon-induced protein with	52	TPR 1.						binding				0						TCTAGACTTGCTCTTTATAAC	0.373		NA											8	60					0	0	0	0
NLRP6	171389	broad.mit.edu	37	11	281335	281335	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:281335C>A	uc010qvs.1	+	4	1601	c.1601C>A	c.(1600-1602)GCC>GAC	p.A534D	NLRP6_uc010qvt.1_Missense_Mutation_p.A534D	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	534						cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGTGGGGACGCCCAGCCGCAC	0.687		NA											12	16					1.58e-08	3.06e-08	1	0
SLC25A22	79751	broad.mit.edu	37	11	792580	792580	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:792580T>C	uc001lri.2	-	7	902	c.560A>G	c.(559-561)TAC>TGC	p.Y187C	CEND1_uc001lrh.1_5'Flank|SLC25A22_uc009yci.2_Missense_Mutation_p.Y187C|SLC25A22_uc001lrj.2_Missense_Mutation_p.Y187C	NM_024698	NP_078974	Q9H936	GHC1_HUMAN	mitochondrial glutamate carrier 1	187	Solcar 2.					integral to membrane|mitochondrial inner membrane|nucleus	L-glutamate transmembrane transporter activity|protein binding|symporter activity				0		all_cancers(49;4.75e-06)|all_epithelial(84;0.00204)|Breast(177;0.00234)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;6.27e-26)|Epithelial(43;4.84e-25)|OV - Ovarian serous cystadenocarcinoma(40;2.72e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	L-Glutamic Acid(DB00142)	GAGTCCCTTGTAGAGACCGGC	0.731		NA											7	19					0	0	0	0
C11orf16	56673	broad.mit.edu	37	11	8947244	8947244	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:8947244C>G	uc001mhb.3	-	5	1094	c.970G>C	c.(970-972)GAG>CAG	p.E324Q	C11orf16_uc001mhc.3_Missense_Mutation_p.E324Q	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	324										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		GCTACTTTCTCCTCTTTAGGA	0.552		NA											13	55					0	0	0	0
C11orf16	56673	broad.mit.edu	37	11	8948556	8948556	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:8948556C>G	uc001mhb.3	-	4	614	c.490G>C	c.(490-492)GAG>CAG	p.E164Q	C11orf16_uc001mhc.3_Missense_Mutation_p.E164Q	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	164										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		TGGCCTGGCTCCCAGAGTGCC	0.547		NA											9	40					0	0	0	0
SBF2	81846	broad.mit.edu	37	11	10064472	10064472	+	Silent	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:10064472A>G	uc001mib.2	-	3	336	c.198T>C	c.(196-198)TTT>TTC	p.F66F	SBF2_uc001mif.3_5'UTR|SBF2_uc001mij.2_RNA	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	66	UDENN.				myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		GGACAACCACAAAGAACGTTG	0.403		NA											23	29					0	0	0	0
MYOD1	4654	broad.mit.edu	37	11	17741386	17741386	+	Silent	SNP	T	T	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:17741386T>G	uc001mni.2	+	1	277	c.57T>G	c.(55-57)TCT>TCG	p.S19S		NM_002478	NP_002469	P15172	MYOD1_HUMAN	myogenic differentiation 1	19					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|protein phosphorylation|skeletal muscle tissue development	nuclear chromatin|transcription factor complex	E-box binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription coactivator activity			breast(2)|ovary(1)	3						CCGACGGCTCTCTCTGCTCCT	0.652		NA											23	40					0	0	0	0
DPF2	5977	broad.mit.edu	37	11	65108938	65108938	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:65108938C>T	uc001odm.2	+	4	382	c.370C>T	c.(370-372)CGC>TGC	p.R124C	DPF2_uc001odn.2_Missense_Mutation_p.R124C|DPF2_uc010roe.1_Missense_Mutation_p.R124C	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	124					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						GGCTCTGTTGCGCACTGACCC	0.567		NA											10	40					0	0	0	0
PPFIA1	8500	broad.mit.edu	37	11	70176348	70176348	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:70176348C>T	uc001opo.2	+	8	1198	c.1000C>T	c.(1000-1002)CGT>TGT	p.R334C	PPFIA1_uc001opn.1_Missense_Mutation_p.R334C|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	334	Potential.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			CGCTGCACAGCGTGAAGCCAC	0.398		NA											23	42					0	0	0	0
MLL	4297	broad.mit.edu	37	11	118392789	118392789	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:118392789G>A	uc001pta.2	+	36	11835	c.11812G>A	c.(11812-11814)GAG>AAG	p.E3938K	MLL_uc001ptb.2_Missense_Mutation_p.E3941K|MLL_uc001ptf.2_5'Flank	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	3938	SET.				apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CTACCGAGGAGAGGAACTCAC	0.478		NA	T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								12	70					0	0	0	0
SRPR	6734	broad.mit.edu	37	11	126136385	126136385	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:126136385C>T	uc001qdh.2	-	6	877	c.826G>A	c.(826-828)GAG>AAG	p.E276K	SRPR_uc010sbm.1_Missense_Mutation_p.E248K|FOXRED1_uc001qdi.2_5'Flank|FOXRED1_uc010sbn.1_5'Flank|FOXRED1_uc010sbo.1_5'Flank|FOXRED1_uc010sbp.1_5'Flank|FOXRED1_uc010sbq.1_5'Flank|FOXRED1_uc001qdj.2_5'Flank|FOXRED1_uc010sbr.1_5'Flank	NM_003139	NP_003130	P08240	SRPR_HUMAN	signal recognition particle receptor	276					SRP-dependent cotranslational protein targeting to membrane	integral to membrane|signal recognition particle receptor complex	GTP binding|GTPase activity|receptor activity|signal recognition particle binding				0	all_hematologic(175;0.145)			BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0736)		TTGATGTCCTCAGACAAGGCA	0.488		NA											15	71					0	0	0	0
CD163	9332	broad.mit.edu	37	12	7636160	7636160	+	Missense_Mutation	SNP	T	T	G	rs141756075	by1000genomes	TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr12:7636160T>G	uc001qsz.3	-	12	3019	c.2891A>C	c.(2890-2892)CAG>CCG	p.Q964P	CD163_uc001qta.3_Missense_Mutation_p.Q964P|CD163_uc009zfw.2_Missense_Mutation_p.Q997P	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	964	SRCR 9.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ACACACCACCTGAGCATCGTC	0.522		NA											10	69					0	0	0	0
DENND5B	160518	broad.mit.edu	37	12	31552693	31552693	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr12:31552693C>T	uc001rki.1	-	16	3149	c.2963G>A	c.(2962-2964)GGG>GAG	p.G988E	DENND5B_uc001rkh.1_Missense_Mutation_p.G1023E|DENND5B_uc009zjq.1_Intron	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	988	PLAT.					integral to membrane				ovary(1)|central_nervous_system(1)	2						GGTCAGCTTCCCCAAGTTCTG	0.443		NA											10	20					0	0	0	0
TROAP	10024	broad.mit.edu	37	12	49722756	49722756	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr12:49722756A>G	uc001rtx.3	+	9	1105	c.938A>G	c.(937-939)CAG>CGG	p.Q313R	TROAP_uc009zlh.2_Missense_Mutation_p.Q313R|TROAP_uc001rty.2_Missense_Mutation_p.Q21R	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	313					cell adhesion	cytoplasm				ovary(1)	1						CCTGTGGCCCAGCCCTTGCCT	0.572		NA											29	57					0	0	0	0
PPFIA2	8499	broad.mit.edu	37	12	81661805	81661805	+	Silent	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr12:81661805T>C	uc001szo.1	-	29	3533	c.3372A>G	c.(3370-3372)GAA>GAG	p.E1124E	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1023										ovary(3)|lung(2)|pancreas(1)	6						TATTTGCATATTCTCGAAGTC	0.393		NA											4	8					0	0	0	0
TXNRD1	7296	broad.mit.edu	37	12	104720144	104720144	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr12:104720144G>C	uc010swk.1	+	12	1350	c.1328G>C	c.(1327-1329)AGA>ACA	p.R443T	TXNRD1_uc010swl.1_Missense_Mutation_p.R293T|TXNRD1_uc010swm.1_Missense_Mutation_p.R345T|TXNRD1_uc010swn.1_Missense_Mutation_p.R293T|TXNRD1_uc010swo.1_Missense_Mutation_p.R293T|TXNRD1_uc010swp.1_Missense_Mutation_p.R255T|TXNRD1_uc010swq.1_Missense_Mutation_p.R343T|TXNRD1_uc001tku.2_RNA|TXNRD1_uc009zun.2_Missense_Mutation_p.R359T	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	443					cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						GCAATAGGAAGAGATGCTTGC	0.289		NA											2	1					0	0	0	0
SPPL3	121665	broad.mit.edu	37	12	121221519	121221519	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr12:121221519G>C	uc001tzd.2	-	5	828	c.347C>G	c.(346-348)CCG>CGG	p.P116R	SPPL3_uc009zwz.2_Missense_Mutation_p.P116R	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	117	Helical; (Potential).					integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTGGCACATCGGGAGGAGAAG	0.323		NA											15	13					0	0	0	0
TMEM132D	121256	broad.mit.edu	37	12	129563188	129563188	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr12:129563188C>A	uc009zyl.1	-	8	2334	c.2006G>T	c.(2005-2007)GGG>GTG	p.G669V	TMEM132D_uc001uia.2_Missense_Mutation_p.G207V	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	669	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CAGCTGCACCCCGAGGTCTGT	0.582		NA											34	56					1.62e-16	3.27e-16	1	0
NBEA	26960	broad.mit.edu	37	13	36229091	36229091	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr13:36229091A>T	uc001uvb.2	+	53	8278	c.8072A>T	c.(8071-8073)TAT>TTT	p.Y2691F	NBEA_uc010abi.2_Missense_Mutation_p.Y1347F|NBEA_uc010tef.1_Missense_Mutation_p.Y484F|NBEA_uc001uvd.2_Missense_Mutation_p.Y269F	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2691						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GATAATCGCTATATTCTTATC	0.368		NA											13	21					0	0	0	0
SLITRK5	26050	broad.mit.edu	37	13	88330022	88330023	+	Missense_Mutation	DNP	GC	GC	AA			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr13:88330022_88330023GC>AA	uc001vln.2	+	2	2598_2599	c.2379_2380GC>AA	c.(2377-2382)CAGCAG>CAAAAG	p.Q794K	SLITRK5_uc010tic.1_Missense_Mutation_p.Q553K	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	794	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					ACCACCTgcagcagcagcagca	0.376		NA											12	18					0	0	0	0
FARP1	10160	broad.mit.edu	37	13	99043103	99043103	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr13:99043103G>C	uc001vnj.2	+	11	1393	c.1057G>C	c.(1057-1059)GAA>CAA	p.E353Q	FARP1_uc001vnh.2_Missense_Mutation_p.E353Q	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	353					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CTATGTTAAAGAAGGAGGACA	0.453		NA											20	71					0	0	0	0
ZIC5	85416	broad.mit.edu	37	13	100622499	100622499	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr13:100622499C>G	uc001vom.1	-	1	1680	c.1431G>C	c.(1429-1431)AAG>AAC	p.K477N		NM_033132	NP_149123	Q96T25	ZIC5_HUMAN	zinc finger protein of the cerebellum 5	477	C2H2-type 1; atypical.				cell differentiation	nucleus	DNA binding|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					GGTTGATGAGCTTGTATTTGG	0.642		NA											5	113					0	0	0	0
MCF2L	23263	broad.mit.edu	37	13	113678963	113678963	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr13:113678963C>T	uc001vsu.2	+	3	362	c.340C>T	c.(340-342)CGG>TGG	p.R114W	MCF2L_uc001vsq.2_Missense_Mutation_p.R114W|MCF2L_uc010tjr.1_Missense_Mutation_p.R57W|MCF2L_uc001vsr.2_Missense_Mutation_p.R61W|MCF2L_uc001vss.3_Missense_Mutation_p.R55W|MCF2L_uc010tjs.1_Missense_Mutation_p.R55W	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	87	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				CCCAGGTGGGCGGGGGCAGGA	0.612		NA											7	77					0	0	0	0
TPPP2	122664	broad.mit.edu	37	14	21499312	21499312	+	Silent	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr14:21499312C>A	uc001vzh.2	+	3	503	c.315C>A	c.(313-315)ACC>ACA	p.T105T	NDRG2_uc010tll.1_Intron	NM_173846	NP_776245	P59282	TPPP2_HUMAN	tubulin polymerization-promoting protein family	105						cytoplasm					0	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		ACCCAGCCACCACTGGCGCTA	0.537		NA											11	47					3.07e-06	5.77e-06	1	0
SLC7A7	9056	broad.mit.edu	37	14	23243254	23243254	+	Silent	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr14:23243254A>G	uc001wgr.3	-	9	1455	c.1317T>C	c.(1315-1317)GAT>GAC	p.D439D	SLC7A7_uc001wgs.3_Silent_p.D439D|SLC7A7_uc001wgt.3_Silent_p.D439D|SLC7A7_uc001wgu.3_Silent_p.D439D|SLC7A7_uc001wgv.3_Silent_p.D439D	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	439					blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		AGTTGATAGTATCACTGTAAA	0.507		NA											34	60					0	0	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885013	24885013	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr14:24885013C>T	uc001wpf.3	+	9	4376	c.4058C>T	c.(4057-4059)GCC>GTC	p.A1353V		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1353					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CCAACCTATGCCCACCTGGCA	0.607		NA											16	131					0	0	0	0
GZMB	3002	broad.mit.edu	37	14	25100420	25100420	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr14:25100420C>G	uc001wps.2	-	5	667	c.601G>C	c.(601-603)GGG>CGG	p.G201R	GZMB_uc010ama.2_Missense_Mutation_p.G189R|GZMB_uc010amb.2_RNA	NM_004131	NP_004122	P10144	GRAB_HUMAN	granzyme B precursor	201	Peptidase S1.				activation of pro-apoptotic gene products|cleavage of lamin|cytolysis|induction of apoptosis by intracellular signals	cytosol|immunological synapse|nucleus	protein binding|serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.028)		CCAGAGTCCCCCTGTGAATAG	0.557		NA											5	68					0	0	0	0
KIAA0317	9870	broad.mit.edu	37	14	75140809	75140809	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr14:75140809G>T	uc001xqb.2	-	9	1591	c.1086C>A	c.(1084-1086)TTC>TTA	p.F362L	KIAA0317_uc010tut.1_Missense_Mutation_p.F201L|KIAA0317_uc001xqc.2_Missense_Mutation_p.F362L	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	362					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		CCTTCACTGAGAATTGCTGGA	0.403		NA											25	25					9.39e-14	1.89e-13	1	0
ASPG	374569	broad.mit.edu	37	14	104570801	104570801	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr14:104570801C>T	uc001yoq.1	+	8	974	c.914C>T	c.(913-915)ACC>ATC	p.T305I	ASPG_uc001yoo.1_Missense_Mutation_p.T333I|ASPG_uc001yop.1_Missense_Mutation_p.T305I|ASPG_uc001yor.1_Missense_Mutation_p.T305I	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	305	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						GGGGCTGTGACCACAGACTAT	0.672		NA											8	43					0	0	0	0
MTA1	9112	broad.mit.edu	37	14	105920571	105920571	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr14:105920571G>A	uc001yqx.2	+	7	661	c.474G>A	c.(472-474)AAG>AAA	p.K158K	MTA1_uc001yqy.2_RNA|MTA1_uc001yqz.1_Silent_p.K72K|MTA1_uc001yra.1_Silent_p.K72K	NM_004689	NP_004680	Q13330	MTA1_HUMAN	metastasis associated protein	158	BAH.				signal transduction	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(154;0.0293)|all_epithelial(191;0.128)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00897)|Epithelial(46;0.026)	Epithelial(152;0.19)		CACAGCAGAAGACCCTGCTGG	0.537		NA											10	49					0	0	0	0
CYFIP1	23191	broad.mit.edu	37	15	22935896	22935896	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:22935896G>A	uc001yus.2	+	9	936	c.832G>A	c.(832-834)GTC>ATC	p.V278I	CYFIP1_uc001yut.2_Missense_Mutation_p.V278I|CYFIP1_uc010aya.1_Missense_Mutation_p.V306I	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	278					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		GGATGGGAGTGTCAGTAACAT	0.373		NA											6	30					0	0	0	0
HERC2	8924	broad.mit.edu	37	15	28386588	28386588	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:28386588G>T	uc001zbj.2	-	78	12111	c.12005C>A	c.(12004-12006)GCT>GAT	p.A4002D		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4002	RCC1 13.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CTTCCCATCAGCCGTCACAGC	0.517		NA											30	21					8.89e-20	1.8e-19	1	0
NDNL2	56160	broad.mit.edu	37	15	29561491	29561491	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:29561491T>C	uc001zco.2	-	1	527	c.419A>G	c.(418-420)TAT>TGT	p.Y140C	FAM189A1_uc010azk.1_Intron	NM_138704	NP_619649	Q96MG7	MAGG1_HUMAN	necdin-like 2	140	MAGE.				regulation of growth	cytoplasm|nucleus					0		all_lung(180;4.69e-11)|Breast(32;0.0013)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00736)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		CACCAGCTTATACCCGAAGAC	0.577		NA											3	89					0	0	0	0
CEP152	22995	broad.mit.edu	37	15	49054851	49054851	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:49054851G>C	uc001zwy.2	-	18	2333	c.2299C>G	c.(2299-2301)CAA>GAA	p.Q767E	CEP152_uc001zwz.2_Missense_Mutation_p.Q767E|CEP152_uc001zxa.1_Missense_Mutation_p.Q674E	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	767	Potential.				centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		TCAAGCTGTTGAATGAGTTTT	0.348		NA											39	31					0	0	0	0
RPS27L	51065	broad.mit.edu	37	15	63447855	63447855	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:63447855C>T	uc002aly.2	-	3	328	c.191G>A	c.(190-192)TGC>TAC	p.C64Y	RPS27L_uc002alx.2_RNA	NM_015920	NP_057004	Q71UM5	RS27L_HUMAN	ribosomal protein S27-like	64					DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|mitotic cell cycle G1/S transition DNA damage checkpoint|positive regulation of anti-apoptosis|translation	nucleus|ribosome	caspase activator activity|metal ion binding|structural constituent of ribosome|translation activator activity				0						TGTAGGCTGGCACAACACTGT	0.413		NA											5	66					0	0	0	0
WHAMM	123720	broad.mit.edu	37	15	83478538	83478538	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:83478538C>T	uc002bje.2	+	1	566	c.60C>T	c.(58-60)TTC>TTT	p.F20F		NM_001080435	NP_001073904	Q8TF30	WHAMM_HUMAN	WAS protein homolog associated with actin, golgi	20						cytoplasmic vesicle membrane|ER-Golgi intermediate compartment|Golgi apparatus	actin binding				0						AGGGCCTCTTCGCCGAGCCCG	0.731		NA											12	20					0	0	0	0
SLC28A1	9154	broad.mit.edu	37	15	85487997	85487997	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:85487997C>T	uc002blg.2	+	18	1975	c.1773C>T	c.(1771-1773)TAC>TAT	p.Y591Y	SLC28A1_uc010bnb.2_Silent_p.Y591Y|SLC28A1_uc010upe.1_Silent_p.Y425Y|SLC28A1_uc010upf.1_Silent_p.Y591Y|SLC28A1_uc010upg.1_Intron	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	591	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GGATCCTCTACATGCCCAGGG	0.597		NA											49	42					0	0	0	0
HBA2	3040	broad.mit.edu	37	16	223537	223537	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:223537C>T	uc002cfv.3	+	3	433	c.367C>T	c.(367-369)CAC>TAC	p.H123Y	HBA2_uc002cfw.2_Intron	NM_000517	NP_000508	P69905	HBA_HUMAN	alpha 2 globin	123			H -> Q (in Westmead).		hydrogen peroxide catabolic process|positive regulation of cell death|protein heterooligomerization	cytosolic small ribosomal subunit|haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity|protein binding				0		all_cancers(16;2.03e-06)|all_epithelial(16;5.16e-06)|Hepatocellular(16;0.000325)|Lung NSC(18;0.0138)|all_lung(18;0.0306)			Amodiaquine(DB00613)|Chloroquine(DB00608)|Iron Dextran(DB00893)|Mefloquine(DB00358)|Primaquine(DB01087)|Quinine(DB00468)	CCCTGCGGTGCACGCCTCCCT	0.662		NA									OREG0003686	type=REGULATORY REGION|Gene=SERPINB9|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	23					0	0	0	0
CORO7	79585	broad.mit.edu	37	16	4408429	4408429	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:4408429C>T	uc002cwh.3	-	24	2516	c.2396G>A	c.(2395-2397)CGG>CAG	p.R799Q	CORO7_uc002cwe.2_RNA|CORO7_uc002cwf.2_Missense_Mutation_p.R799Q|CORO7_uc002cwg.3_Missense_Mutation_p.R579Q|CORO7_uc010uxh.1_Missense_Mutation_p.R781Q|CORO7_uc010uxi.1_Missense_Mutation_p.R714Q|CORO7_uc002cwi.1_Missense_Mutation_p.R579Q	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	799						cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						CCGCAGGCACCGCATCAGCTC	0.697		NA											5	33					0	0	0	0
MYH11	4629	broad.mit.edu	37	16	15820749	15820749	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:15820749C>T	uc002ddy.2	-	28	3921	c.3814G>A	c.(3814-3816)GAG>AAG	p.E1272K	MYH11_uc002ddv.2_Missense_Mutation_p.E1279K|MYH11_uc002ddw.2_Missense_Mutation_p.E1272K|MYH11_uc002ddx.2_Missense_Mutation_p.E1279K|MYH11_uc010bvg.2_Missense_Mutation_p.E1104K|MYH11_uc010bvh.2_5'Flank	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1272	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CGGGCCCGCTCCCCATCGCTG	0.647		NA	T	CBFB	AML								6	150					0	0	0	0
C16orf62	57020	broad.mit.edu	37	16	19586419	19586419	+	Splice_Site	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:19586419G>A	uc002dgn.1	+	5	421	c.409_splice	c.e5-1	p.N137_splice	C16orf62_uc002dgo.1_Splice_Site_p.N137_splice|C16orf62_uc010vas.1_Splice_Site|C16orf62_uc002dgm.1_Splice_Site_p.N137_splice	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020							integral to membrane				ovary(1)	1						TGTCTCTGCAGAATCTGTTTA	0.294		NA											5	33					0	0	0	0
EEF2K	29904	broad.mit.edu	37	16	22271782	22271782	+	Splice_Site	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:22271782G>C	uc002dki.2	+	11	1717	c.1232_splice	c.e11-1	p.H411_splice	EEF2K_uc002dkh.2_Splice_Site	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase						insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		TCCCTGCCCAGATTGGCCAGT	0.547		NA											5	115					0	0	0	0
SH2B1	25970	broad.mit.edu	37	16	28877954	28877954	+	Missense_Mutation	SNP	C	C	T	rs144107554		TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:28877954C>T	uc002dri.2	+	4	978	c.539C>T	c.(538-540)TCC>TTC	p.S180F	uc010vct.1_Intron|SH2B1_uc010vdc.1_Intron|SH2B1_uc002drj.2_Missense_Mutation_p.S180F|SH2B1_uc002drk.2_Missense_Mutation_p.S180F|SH2B1_uc002drl.2_Missense_Mutation_p.S180F|SH2B1_uc010vdd.1_Intron|SH2B1_uc010vde.1_Missense_Mutation_p.S180F|SH2B1_uc002drm.2_Missense_Mutation_p.S180F	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	180	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).|Interaction with RAC1 (By similarity).|Required for NGF signaling (By similarity).				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						GACCCTCCCTCCTCCGCTGGG	0.652		NA											19	46					0	0	0	0
CES1	1066	broad.mit.edu	37	16	55862770	55862770	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:55862770C>A	uc002eim.2	-	2	274	c.166G>T	c.(166-168)GCC>TCC	p.A56S	CES1_uc002eil.2_Missense_Mutation_p.A57S|CES1_uc002ein.2_Missense_Mutation_p.A56S	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	56				A -> G (in Ref. 2; AAA16036/AAA35711).	response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	GGCGGCTTGGCAAAAGGGATT	0.557		NA											11	64					3.86e-05	7.03e-05	1	0
RSPRY1	89970	broad.mit.edu	37	16	57238809	57238809	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:57238809C>A	uc002elb.2	+	2	517	c.239C>A	c.(238-240)CCT>CAT	p.P80H	RSPRY1_uc002elc.2_Missense_Mutation_p.P80H|RSPRY1_uc002eld.2_Missense_Mutation_p.P80H|RSPRY1_uc002ele.1_Missense_Mutation_p.P80H	NM_133368	NP_588609	Q96DX4	RSPRY_HUMAN	ring finger and SPRY domain containing 1	80						extracellular region	zinc ion binding			ovary(1)	1						CCACGGGACCCTGTTCGGCCA	0.547		NA											7	67					0.000157383	0.000281906	1	0
CDH11	1009	broad.mit.edu	37	16	64984742	64984742	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:64984742C>A	uc002eoi.2	-	12	2256	c.1822G>T	c.(1822-1824)GCC>TCC	p.A608S	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.A608S|CDH11_uc010vin.1_Missense_Mutation_p.A482S	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	608	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		AGAATGTAGGCCTCTGCGTTG	0.637		NA	T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			17	26					4.75e-09	9.27e-09	1	0
RLTPR	146206	broad.mit.edu	37	16	67683451	67683451	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:67683451C>T	uc002etn.2	+	20	1968	c.1848C>T	c.(1846-1848)ATC>ATT	p.I616I	RLTPR_uc010cel.1_Silent_p.I609I|RLTPR_uc010vjr.1_Silent_p.I580I	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	616	Tropomodulin-like.|LRR 14.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		CGCTGGATATCAGCGGCAACG	0.672		NA											10	46					0	0	0	0
CENPT	80152	broad.mit.edu	37	16	67862656	67862656	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:67862656C>G	uc002eun.3	-	14	1920	c.1371G>C	c.(1369-1371)AAG>AAC	p.K457N	CENPT_uc002eum.3_Missense_Mutation_p.K402N|CENPT_uc010vkc.1_Missense_Mutation_p.K215N|CENPT_uc010vkd.1_Missense_Mutation_p.K210N	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	457					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		TCAGTCCAGCCTTGTGGGGAT	0.587		NA											12	171					0	0	0	0
EDC4	23644	broad.mit.edu	37	16	67917557	67917557	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:67917557G>A	uc002eur.2	+	28	4102	c.3936G>A	c.(3934-3936)CCG>CCA	p.P1312P	EDC4_uc010cer.2_Silent_p.P931P|EDC4_uc002eus.2_Silent_p.P1042P|EDC4_uc002eut.1_3'UTR|NRN1L_uc002euu.2_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	1312					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CACCCTGCCCGCTCTCCCAGC	0.587		NA									OREG0023890	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	186					0	0	0	0
BCAR1	9564	broad.mit.edu	37	16	75276926	75276926	+	Silent	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:75276926G>T	uc002fdv.2	-	2	198	c.75C>A	c.(73-75)CGC>CGA	p.R25R	BCAR1_uc010cgu.2_5'UTR|BCAR1_uc010vna.1_Silent_p.R23R|BCAR1_uc010vnb.1_Silent_p.R71R|BCAR1_uc002fdw.2_Silent_p.R25R|BCAR1_uc010vnc.1_Silent_p.R25R|BCAR1_uc010vnd.1_Silent_p.R43R|BCAR1_uc002fdx.2_Silent_p.R43R	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	25	SH3.				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGTCACCCTTGCGGAAGGAGA	0.627		NA											7	44					2.01e-06	3.79e-06	1	0
PKD1L2	114780	broad.mit.edu	37	16	81253869	81253869	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr16:81253869C>T	uc002fgh.1	-	1	107	c.107G>A	c.(106-108)AGA>AAA	p.R36K	PKD1L2_uc002fgj.2_Missense_Mutation_p.R36K	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	36	Extracellular (Potential).|C-type lectin.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCAAGCATCTCTGAAGGCCAC	0.562		NA											15	70					0	0	0	0
RPH3AL	9501	broad.mit.edu	37	17	171088	171088	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:171088C>T	uc002frd.1	-	2	240	c.196G>A	c.(196-198)GAC>AAC	p.D66N	RPH3AL_uc010vpy.1_Missense_Mutation_p.D66N|RPH3AL_uc002fre.1_Missense_Mutation_p.D66N|RPH3AL_uc002frf.1_Missense_Mutation_p.D66N|RPH3AL_uc010cjl.1_Missense_Mutation_p.D66N	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	66	RabBD.				exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		TCCAGGACGTCGAGCCGCTCT	0.682		NA											29	75					0	0	0	0
MYO1C	4641	broad.mit.edu	37	17	1375450	1375450	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:1375450G>A	uc002fsp.2	-	18	2090	c.1870C>T	c.(1870-1872)CGC>TGC	p.R624C	MYO1C_uc002fsn.2_Missense_Mutation_p.R605C|MYO1C_uc002fso.2_Missense_Mutation_p.R589C|MYO1C_uc010vqj.1_Missense_Mutation_p.R589C|MYO1C_uc010vqk.1_Missense_Mutation_p.R600C	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	624	Myosin head-like.				mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TTGATGCAGCGGACGTAGGCG	0.657		NA											5	112					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578419	7578420	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:7578419_7578420CC>AA	uc002gim.2	-	5	704_705	c.510_511GG>TT	c.(508-513)ACGGAG>ACTTAG	p.E171*	TP53_uc002gig.1_Nonsense_Mutation_p.E171*|TP53_uc002gih.2_Nonsense_Mutation_p.E171*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.E39*|TP53_uc010cng.1_Nonsense_Mutation_p.E39*|TP53_uc002gii.1_Nonsense_Mutation_p.E39*|TP53_uc010cnh.1_Nonsense_Mutation_p.E171*|TP53_uc010cni.1_Nonsense_Mutation_p.E171*|TP53_uc002gij.2_Nonsense_Mutation_p.E171*|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Nonsense_Mutation_p.E78*|TP53_uc002gio.2_Nonsense_Mutation_p.E39*|TP53_uc010vug.1_Nonsense_Mutation_p.E132*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	171	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		E -> G (in sporadic cancers; somatic mutation).|E -> K (in sporadic cancers; somatic mutation).|E -> V (in sporadic cancers; somatic mutation).|E -> D (in sporadic cancers; somatic mutation).|E -> A (in a sporadic cancer; somatic mutation).|E -> Q (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.E171*(10)|p.E171K(8)|p.0?(7)|p.T170T(7)|p.E171G(3)|p.E171Q(3)|p.E171fs*10(3)|p.E171fs*3(2)|p.E171V(2)|p.E171D(2)|p.V157_C176del20(1)|p.K164_P219del(1)|p.P151_V173del23(1)|p.E171fs*61(1)|p.E171fs*9(1)|p.T170fs*2(1)|p.E171fs*1(1)|p.T170fs*8(1)|p.E171_V172delEV(1)|p.H168fs*69(1)|p.T170_E171insXX(1)|p.E171_H179delEVVRRCPHH(1)|p.S149fs*72(1)|p.E171A(1)|p.H168fs*3(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CTCACAACCTCCGTCATGTGCT	0.658		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			16	26					0	0	0	0
MAPK7	5598	broad.mit.edu	37	17	19286398	19286398	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:19286398G>A	uc002gvn.2	+	7	2691	c.2305G>A	c.(2305-2307)GAT>AAT	p.D769N	MAPK7_uc002gvo.2_Missense_Mutation_p.D630N|MAPK7_uc002gvq.2_Missense_Mutation_p.D769N|MAPK7_uc002gvp.2_Missense_Mutation_p.D769N|uc010vyt.1_5'Flank	NM_139033	NP_620602	Q13164	MK07_HUMAN	mitogen-activated protein kinase 7 isoform 1	769	May not be required for kinase activity; required to stimulate MEF2C activity (By similarity).				cell cycle|cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					CAGCCAGGCAGATTCAGCCTC	0.597		NA											28	78					0	0	0	0
SLC47A2	146802	broad.mit.edu	37	17	19610064	19610064	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:19610064G>A	uc002gwe.3	-	9	1021	c.846C>T	c.(844-846)AGC>AGT	p.S282S	SLC47A2_uc002gwg.3_Silent_p.S246S|SLC47A2_uc002gwf.3_Silent_p.S246S|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_RNA|SLC47A2_uc010cqs.1_RNA|SLC47A2_uc010cqt.1_RNA	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	282	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					GCAGGCACTGGCTGGACCAAC	0.612		NA											19	53					0	0	0	0
CDK12	51755	broad.mit.edu	37	17	37673784	37673784	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:37673784A>G	uc010cvv.2	+	10	3524	c.2938A>G	c.(2938-2940)AGG>GGG	p.R980G	CDK12_uc010wef.1_Missense_Mutation_p.R979G|CDK12_uc002hrw.3_Missense_Mutation_p.R980G	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	980	Protein kinase.				mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						GCAATATCGAAGGCGTCTACG	0.473		NA								TCGA Ovarian(9;0.13)			26	88					0	0	0	0
KRTAP9-9	81870	broad.mit.edu	37	17	39412084	39412084	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:39412084C>A	uc010wfq.1	+	3	404	c.402C>A	c.(400-402)TGC>TGA	p.C134*		NM_030975	NP_112237	B5MDD6	B5MDD6_HUMAN	keratin associated protein 9-9	149						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000397)			AGACCACCTGCTGCAGGACCA	0.602		NA											78	170					3.55e-40	7.36e-40	1	0
KRT36	8689	broad.mit.edu	37	17	39644611	39644611	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:39644611C>T	uc002hwt.2	-	3	583	c.583G>A	c.(583-585)GAC>AAC	p.D195N		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	195	Rod.|Coil 1B.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				CCGTTGATGTCGGCCTCCACT	0.592		NA											40	70					0	0	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40847632	40847632	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:40847632G>T	uc002iay.2	+	19	3302	c.3086G>T	c.(3085-3087)AGC>ATC	p.S1029I	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	1029	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		CACATGCTGAGCCGGCCAGTG	0.617		NA											9	84					0.000274275	0.00048489	1	0
GPATCH8	23131	broad.mit.edu	37	17	42478140	42478140	+	Missense_Mutation	SNP	T	T	G	rs143765658	byFrequency	TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:42478140T>G	uc002igw.1	-	8	1369	c.1305A>C	c.(1303-1305)AAA>AAC	p.K435N	GPATCH8_uc002igv.1_Missense_Mutation_p.K357N|GPATCH8_uc010wiz.1_Missense_Mutation_p.K357N	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	435						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		AACTGCCTTTTTTACTCTCTG	0.443		NA									OREG0024461	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	181					0	0	0	0
CBX1	10951	broad.mit.edu	37	17	46153470	46153470	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:46153470G>A	uc002ind.3	-	3	692	c.211C>T	c.(211-213)CAG>TAG	p.Q71*	CBX1_uc002ine.3_Nonsense_Mutation_p.Q71*	NM_006807	NP_006798	P83916	CBX1_HUMAN	heterochromatin protein 1-beta	71	Chromo 1.					nuclear heterochromatin|nucleoplasm|spindle	chromatin binding|enzyme binding				0						GCTGTTTTCTGTGACTGCAGA	0.403		NA											15	74					0	0	0	0
TBCD	6904	broad.mit.edu	37	17	80865685	80865685	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr17:80865685G>A	uc002kfz.2	+	21	2101	c.1971G>A	c.(1969-1971)CAG>CAA	p.Q657Q	TBCD_uc002kfx.1_Silent_p.Q640Q|TBCD_uc002kfy.1_Silent_p.Q657Q|TBCD_uc002kgb.1_5'UTR	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	657					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			GCCTGAAGCAGATTCACCAGC	0.617		NA											4	13					0	0	0	0
ZFP161	7541	broad.mit.edu	37	18	5291434	5291434	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr18:5291434G>C	uc002kmq.2	-	4	934	c.773C>G	c.(772-774)ACA>AGA	p.T258R	ZFP161_uc002kmr.2_Missense_Mutation_p.T258R|ZFP161_uc010dkp.2_Missense_Mutation_p.T258R	NM_003409	NP_003400	O43829	ZF161_HUMAN	zinc finger protein 161 homolog	258					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACTGGCGGCTGTTGTCCAGCC	0.493		NA											32	110					0	0	0	0
ZFP161	7541	broad.mit.edu	37	18	5291439	5291439	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr18:5291439C>G	uc002kmq.2	-	4	929	c.768G>C	c.(766-768)TGG>TGC	p.W256C	ZFP161_uc002kmr.2_Missense_Mutation_p.W256C|ZFP161_uc010dkp.2_Missense_Mutation_p.W256C	NM_003409	NP_003400	O43829	ZF161_HUMAN	zinc finger protein 161 homolog	256					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CGGCTGTTGTCCAGCCTGGTG	0.493		NA											33	115					0	0	0	0
EPB41L3	23136	broad.mit.edu	37	18	5394794	5394794	+	Splice_Site	SNP	T	T	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr18:5394794T>A	uc002kmt.1	-	22	3240	c.3154_splice	c.e22-1	p.A1052_splice	EPB41L3_uc010wzh.1_Intron|EPB41L3_uc002kmu.1_Splice_Site_p.A830_splice|EPB41L3_uc010dkq.1_Splice_Site_p.A721_splice|EPB41L3_uc002kms.1_Splice_Site_p.A287_splice|EPB41L3_uc010wze.1_Splice_Site_p.A357_splice|EPB41L3_uc010wzf.1_Splice_Site_p.A349_splice|EPB41L3_uc010wzg.1_Splice_Site_p.A324_splice|EPB41L3_uc010dkr.2_Splice_Site_p.A444_splice	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3						cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						AGCCAGCGCCTATCCCCGGGA	0.473		NA											62	64					0	0	0	0
CELF4	56853	broad.mit.edu	37	18	34855109	34855109	+	Silent	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr18:34855109G>T	uc002lae.2	-	4	942	c.546C>A	c.(544-546)ACC>ACA	p.T182T	CELF4_uc010dnd.1_Silent_p.T181T|CELF4_uc002lag.2_Silent_p.T172T|CELF4_uc002laf.2_Silent_p.T177T|CELF4_uc002lai.2_Silent_p.T167T|CELF4_uc002lah.1_5'Flank|CELF4_uc002laj.1_5'Flank	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	182	Sufficient for RNA-binding and MSE- dependent splicing activity.|RRM 2.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						CGCGCAGGATGGTGCACTCCT	0.662		NA											8	81					1.13e-05	2.09e-05	1	0
ZCCHC2	54877	broad.mit.edu	37	18	60242731	60242731	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr18:60242731C>T	uc002lip.3	+	13	3417	c.3417C>T	c.(3415-3417)AGC>AGT	p.S1139S	ZCCHC2_uc002lio.2_RNA|ZCCHC2_uc002liq.2_Silent_p.S609S	NM_017742	NP_060212	Q9C0B9	ZCHC2_HUMAN	zinc finger, CCHC domain containing 2	1139	CCHC-type.				cell communication	cytoplasm	nucleic acid binding|phosphatidylinositol binding|zinc ion binding			lung(1)|prostate(1)	2						GTGGTGTAAGCGGACACTATG	0.458		NA											9	25					0	0	0	0
XAB2	56949	broad.mit.edu	37	19	7685195	7685195	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:7685195C>A	uc002mgx.2	-	16	2258	c.2232G>T	c.(2230-2232)CAG>CAT	p.Q744H		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	744					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						CCTTGAGCATCTGCGAGGCCA	0.627		NA						Direct_reversal_of_damage|NER					6	43					3.6e-05	6.58e-05	1	0
TIMM44	10469	broad.mit.edu	37	19	7997752	7997752	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:7997752G>A	uc002miz.2	-	8	837	c.835C>T	c.(835-837)CTT>TTT	p.L279F	TIMM44_uc002mja.2_Missense_Mutation_p.L19F|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	279					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						TTGTCCGTAAGGGCCCGGGAT	0.632		NA											4	84					0	0	0	0
FBN3	84467	broad.mit.edu	37	19	8148207	8148207	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:8148207G>T	uc002mjf.2	-	56	7158	c.7137C>A	c.(7135-7137)TGC>TGA	p.C2379*	FBN3_uc002mje.2_Nonsense_Mutation_p.C218*	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2379	EGF-like 38; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGCTGTTGATGCACTCCCCAT	0.597		NA											16	64					1.57e-10	3.09e-10	1	0
OR7D2	162998	broad.mit.edu	37	19	9296822	9296822	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:9296822G>A	uc002mkz.1	+	1	553	c.365G>A	c.(364-366)CGG>CAG	p.R122Q		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	122	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						GCCTATGACCGGTTTGTGGCT	0.502		NA											11	140					0	0	0	0
TMEM161A	54929	broad.mit.edu	37	19	19243544	19243544	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:19243544C>T	uc002nlg.2	-	4	238	c.208G>A	c.(208-210)GAG>AAG	p.E70K	TMEM161A_uc010eca.2_RNA|TMEM161A_uc002nlh.2_Missense_Mutation_p.E70K|TMEM161A_uc002nli.2_Missense_Mutation_p.E70K|TMEM161A_uc002nlj.2_5'UTR	NM_017814	NP_060284	Q9NX61	T161A_HUMAN	transmembrane protein 161A precursor	70	Extracellular (Potential).				cellular response to oxidative stress|cellular response to UV|negative regulation of apoptosis|positive regulation of DNA repair|response to retinoic acid	integral to membrane				breast(2)	2			OV - Ovarian serous cystadenocarcinoma(5;1.19e-05)|Epithelial(12;0.0011)			GGCTTCTCCTCACTAAGGCCA	0.627		NA											4	27					0	0	0	0
ZNF100	163227	broad.mit.edu	37	19	21909734	21909734	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:21909734G>T	uc002nqi.2	-	5	1579	c.1380C>A	c.(1378-1380)GAC>GAA	p.D460E	ZNF100_uc002nqh.2_Missense_Mutation_p.D396E	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	460	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCCACATTCGTCACATTTGT	0.408		NA											11	89					6.4e-05	0.000115937	1	0
ZNF208	7757	broad.mit.edu	37	19	22156525	22156525	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:22156525G>A	uc002nqp.2	-	4	1460	c.1311C>T	c.(1309-1311)TCC>TCT	p.S437S	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TAAGGTTTGAGGACCAGTTGA	0.378		NA											24	75					0	0	0	0
ZNF208	7757	broad.mit.edu	37	19	22156838	22156838	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:22156838G>A	uc002nqp.2	-	4	1147	c.998C>T	c.(997-999)GCA>GTA	p.A333V	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGCATGAATTGCCTTATGTGT	0.393		NA											42	59					0	0	0	0
ZNF254	9534	broad.mit.edu	37	19	24310294	24310294	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:24310294T>G	uc002nru.2	+	4	1626	c.1492T>G	c.(1492-1494)TCT>GCT	p.S498A	ZNF254_uc010xrk.1_Missense_Mutation_p.S413A	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	498	C2H2-type 11.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				ATGTGGCAAATCTTTTAGCCA	0.408		NA											3	72					0	0	0	0
PLEKHF1	79156	broad.mit.edu	37	19	30165036	30165036	+	Missense_Mutation	SNP	A	A	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:30165036A>C	uc002nsh.3	+	2	392	c.290A>C	c.(289-291)AAG>ACG	p.K97T	PLEKHF1_uc002nsi.3_Missense_Mutation_p.K182T	NM_024310	NP_077286	Q96S99	PKHF1_HUMAN	apoptosis-inducing protein D	97	PH.				apoptosis	lysosome|nucleus|perinuclear region of cytoplasm	metal ion binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			CTGCAGGCCAAGAACCGCTGG	0.602		NA											22	27					0	0	0	0
ZNF536	9745	broad.mit.edu	37	19	31039643	31039643	+	Silent	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:31039643C>A	uc002nsu.1	+	4	3255	c.3117C>A	c.(3115-3117)GTC>GTA	p.V1039V	ZNF536_uc010edd.1_Silent_p.V1039V	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1039					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGGTCACAGTCAACTGCAAAG	0.542		NA											17	45					3.53e-06	6.61e-06	1	0
DMPK	1760	broad.mit.edu	37	19	46280797	46280797	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:46280797C>T	uc002pdd.1	-	7	1508	c.964G>A	c.(964-966)GAC>AAC	p.D322N	DMPK_uc010xxs.1_Missense_Mutation_p.D223N|DMPK_uc002pde.1_Missense_Mutation_p.D322N|DMPK_uc002pdf.1_Missense_Mutation_p.D312N|DMPK_uc002pdg.1_Missense_Mutation_p.D312N|DMPK_uc002pdh.1_Missense_Mutation_p.D312N|DMPK_uc002pdi.1_Missense_Mutation_p.D338N|DMPK_uc010xxt.1_Missense_Mutation_p.D312N	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	322	Protein kinase.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		TGAATGAAGTCTCGAGCCTCC	0.652		NA											11	59					0	0	0	0
LHB	3972	broad.mit.edu	37	19	49519449	49519449	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:49519449G>A	uc002plt.2	-	3	311	c.302C>T	c.(301-303)TCC>TTC	p.S101F		NM_000894	NP_000885	P01229	LSHB_HUMAN	luteinizing hormone beta subunit precursor	101					cell-cell signaling|cellular nitrogen compound metabolic process|male gonad development|peptide hormone processing|progesterone biosynthetic process|signal transduction	extracellular region|soluble fraction	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)	Lutropin alfa(DB00044)|Menotropins(DB00032)	CACAGGGAAGGAGACCACGGG	0.672		NA											5	104					0	0	0	0
CPT1C	126129	broad.mit.edu	37	19	50209265	50209265	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:50209265C>A	uc002ppj.2	+	10	1269	c.1064C>A	c.(1063-1065)CCG>CAG	p.P355Q	CPT1C_uc002ppl.3_Missense_Mutation_p.P321Q|CPT1C_uc002ppi.2_Missense_Mutation_p.P272Q|CPT1C_uc002ppk.2_Missense_Mutation_p.P344Q|CPT1C_uc010eng.2_Missense_Mutation_p.P355Q|CPT1C_uc010enh.2_Missense_Mutation_p.P355Q|CPT1C_uc010ybc.1_Missense_Mutation_p.P226Q|CPT1C_uc010eni.1_Missense_Mutation_p.P12Q	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	355	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		CTGCTTTCCCCGAGAGCCCTG	0.612		NA											4	69					0.00024832	0.000441879	1	0
ZNF701	55762	broad.mit.edu	37	19	53086647	53086647	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:53086647G>T	uc002pzs.1	+	4	1462	c.1335G>T	c.(1333-1335)AAG>AAT	p.K445N	ZNF701_uc010ydn.1_Missense_Mutation_p.K511N	NM_018260	NP_060730	Q9NV72	ZN701_HUMAN	zinc finger protein 701	445	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0105)|GBM - Glioblastoma multiforme(134;0.0402)		AATGTGGCAAGGTTTTTAATC	0.348		NA											17	33					5.04e-11	9.94e-11	1	0
LILRA5	353514	broad.mit.edu	37	19	54823182	54823182	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:54823182G>A	uc002qfe.2	-	4	481	c.361C>T	c.(361-363)CCT>TCT	p.P121S	LILRA5_uc002qff.2_Missense_Mutation_p.P109S|LILRA5_uc010yev.1_Missense_Mutation_p.P121S|LILRA5_uc010yew.1_Missense_Mutation_p.P109S|LILRA5_uc002qfh.1_Missense_Mutation_p.P109S|LILRA5_uc002qfg.1_Missense_Mutation_p.P121S	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	121	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CAGCCTGCAGGGCTGTAGTAG	0.612		NA											48	141					0	0	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55286879	55286879	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:55286879G>T	uc002qhb.1	+	4	671	c.633G>T	c.(631-633)AAG>AAT	p.K211N	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_RNA|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.K211N	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	211	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AGTGGTCAAAGTCAAGTGACC	0.547		NA											14	188					0.000308642	0.000544466	1	0
FCAR	2204	broad.mit.edu	37	19	55399565	55399565	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:55399565C>T	uc002qhr.1	+	4	750	c.553C>T	c.(553-555)CTC>TTC	p.L185F	FCAR_uc002qhq.2_Missense_Mutation_p.L185F|FCAR_uc002qhs.1_Intron|FCAR_uc002qht.1_Missense_Mutation_p.L158F|FCAR_uc010esi.1_Intron|FCAR_uc002qhu.1_Intron|FCAR_uc002qhv.1_Missense_Mutation_p.L185F|FCAR_uc002qhw.1_Missense_Mutation_p.L173F|FCAR_uc002qhx.1_Intron|FCAR_uc002qhy.1_Missense_Mutation_p.L173F|FCAR_uc002qhz.1_Missense_Mutation_p.L173F|FCAR_uc002qia.1_Missense_Mutation_p.L76F	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	185	Ig-like C2-type 2.|Extracellular (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		TCCTGTGGACCTCAATGTCTC	0.537		NA											8	17					0	0	0	0
NLRP2	55655	broad.mit.edu	37	19	55501499	55501499	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:55501499G>T	uc002qij.2	+	9	2562	c.2476G>T	c.(2476-2478)GAG>TAG	p.E826*	NLRP2_uc010yfp.1_Nonsense_Mutation_p.E803*|NLRP2_uc010esn.2_Nonsense_Mutation_p.E802*|NLRP2_uc010eso.2_Nonsense_Mutation_p.E823*|NLRP2_uc010esp.2_Nonsense_Mutation_p.E804*	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	826	LRR 1.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GCTTCTGGATGAGGGTGCTAA	0.517		NA											19	65					3.71e-20	7.56e-20	1	0
NLRP9	338321	broad.mit.edu	37	19	56220313	56220313	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:56220313C>G	uc002qly.2	-	9	2969	c.2941G>C	c.(2941-2943)GAC>CAC	p.D981H		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	981						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TATTCCTCGTCAATCCAAGGT	0.488		NA											9	72					0	0	0	0
PEG3	5178	broad.mit.edu	37	19	57327825	57327825	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr19:57327825C>A	uc002qnu.2	-	7	2336	c.1985G>T	c.(1984-1986)TGT>TTT	p.C662F	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.C633F|PEG3_uc002qnv.2_Missense_Mutation_p.C662F|PEG3_uc002qnw.2_Missense_Mutation_p.C538F|PEG3_uc002qnx.2_Missense_Mutation_p.C536F|PEG3_uc010etr.2_Missense_Mutation_p.C662F	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	662					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGTTTCCTCACACACTTTACC	0.438		NA											27	91					1.26e-06	2.4e-06	1	0
TPO	7173	broad.mit.edu	37	2	1497685	1497685	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:1497685A>G	uc002qww.2	+	11	1971	c.1880A>G	c.(1879-1881)AAG>AGG	p.K627R	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.K570R|TPO_uc002qwr.2_Missense_Mutation_p.K627R|TPO_uc002qwx.2_Missense_Mutation_p.K570R|TPO_uc010yio.1_Missense_Mutation_p.K454R|TPO_uc010yip.1_Missense_Mutation_p.K627R|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	627	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GACTTGTACAAGCATCCTGAC	0.612		NA											12	33					0	0	0	0
SNRNP200	23020	broad.mit.edu	37	2	96953231	96953231	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:96953231C>T	uc002svu.2	-	26	3516	c.3430G>A	c.(3430-3432)GAG>AAG	p.E1144K	SNRNP200_uc002svt.2_5'Flank|SNRNP200_uc010yuj.1_5'Flank|SNRNP200_uc002svv.1_5'Flank|SNRNP200_uc002svw.1_Missense_Mutation_p.E216K	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1144	SEC63 1.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						TTCTTCTTCTCAATCTTCTTC	0.517		NA											31	55					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179571656	179571657	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:179571656_179571657GG>TT	uc010zfg.1	-	98	25558_25559	c.25334_25335CC>AA	c.(25333-25335)ACC>AAA	p.T8445K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.T5106K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9372							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCTTTCTTGGTTGCTGGGGC	0.396		NA											5	13					0	0	0	0
CDK15	65061	broad.mit.edu	37	2	202744779	202744779	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:202744779C>A	uc002uyt.2	+	12	1136	c.1087C>A	c.(1087-1089)CTG>ATG	p.L363M	CDK15_uc002uys.2_Missense_Mutation_p.L312M|CDK15_uc010ftn.1_Missense_Mutation_p.L312M|CDK15_uc002uyu.1_RNA	NM_139158	NP_631897	Q96Q40	CDK15_HUMAN	PFTAIRE protein kinase 2	363	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|metal ion binding|protein binding			breast(2)|ovary(1)|lung(1)|kidney(1)	5					Adenosine triphosphate(DB00171)	AGCTGAAGACCTGGCCTCCCA	0.507		NA											8	29					1.11e-13	2.23e-13	1	0
RNF25	64320	broad.mit.edu	37	2	219528721	219528721	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:219528721G>A	uc002vit.2	-	10	1427	c.1339C>T	c.(1339-1341)CGG>TGG	p.R447W	RNF25_uc010fvw.2_Missense_Mutation_p.R335W	NM_022453	NP_071898	Q96BH1	RNF25_HUMAN	ring finger protein 25	447					positive regulation of NF-kappaB transcription factor activity	cytosol|nucleus	NF-kappaB binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;6.99e-07)|all cancers(144;0.000129)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GACTCCCTCCGAGTACCAGGC	0.607		NA											9	95					0	0	0	0
COL4A4	1286	broad.mit.edu	37	2	227924130	227924130	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:227924130C>G	uc010zlt.1	-	28	3028	c.2374G>C	c.(2374-2376)GGG>CGG	p.G792R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	792	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCTTCAGCCCCTGGACATCCC	0.537		NA											4	151					0	0	0	0
DIS3L2	129563	broad.mit.edu	37	2	233198650	233198650	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:233198650G>A	uc010fxz.2	+	17	2387	c.2111G>A	c.(2110-2112)CGC>CAC	p.R704H	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA|DIS3L2_uc002vsp.1_5'Flank	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	704							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		TCGCCCATCCGCCGCTTTGCC	0.667		NA											10	94					0	0	0	0
MTERFD2	130916	broad.mit.edu	37	2	242035433	242035433	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:242035433C>T	uc002wan.1	-	3	1706	c.1213G>A	c.(1213-1215)GAC>AAC	p.D405N	MTERFD2_uc010zoj.1_Missense_Mutation_p.D188N	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	376										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		tcgtcgtcgtcctcatcctca	0.199		NA											5	68					0	0	0	0
THBD	7056	broad.mit.edu	37	20	23029759	23029759	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr20:23029759T>C	uc002wss.2	-	1	543	c.383A>G	c.(382-384)AAT>AGT	p.N128S	THBD_uc002wst.1_5'Flank|THBD_uc002wsu.1_Missense_Mutation_p.N69S	NM_000361	NP_000352	P07204	TRBM_HUMAN	thrombomodulin precursor	128	C-type lectin.|Extracellular (Potential).				blood coagulation|leukocyte migration|negative regulation of fibrinolysis|negative regulation of platelet activation	cell surface|integral to plasma membrane	calcium ion binding|protein binding|transmembrane receptor activity				0	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)				Drotrecogin alfa(DB00055)	GGGAGCCCCATTGAGGTCGAG	0.677		NA											3	8					0	0	0	0
ACSS2	55902	broad.mit.edu	37	20	33470765	33470765	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr20:33470765A>T	uc002xbd.2	+	2	468	c.347A>T	c.(346-348)AAG>ATG	p.K116M	ACSS2_uc002xbc.2_Missense_Mutation_p.K21M|ACSS2_uc010zum.1_RNA|ACSS2_uc010gey.2_Missense_Mutation_p.K116M|ACSS2_uc002xbe.2_Translation_Start_Site|ACSS2_uc002xbf.2_Missense_Mutation_p.K116M	NM_018677	NP_061147	Q9NR19	ACSA_HUMAN	acyl-CoA synthetase short-chain family member 2	116					ethanol oxidation|lipid biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	acetate-CoA ligase activity|ATP binding|protein binding				0					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CATGAGAAAAAGCTTGGAGAT	0.294		NA											4	22					0	0	0	0
CPNE1	8904	broad.mit.edu	37	20	34214297	34214297	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr20:34214297G>A	uc002xdf.2	-	18	1843	c.1480C>T	c.(1480-1482)CGG>TGG	p.R494W	CPNE1_uc002xdc.2_Missense_Mutation_p.R156W|CPNE1_uc010zvj.1_Missense_Mutation_p.R499W|CPNE1_uc002xde.2_Missense_Mutation_p.R470W|CPNE1_uc002xdg.2_Missense_Mutation_p.R438W|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.R494W|CPNE1_uc002xdi.2_Missense_Mutation_p.R494W|CPNE1_uc002xdj.2_Missense_Mutation_p.R494W|CPNE1_uc002xdk.2_Missense_Mutation_p.R494W|CPNE1_uc002xdl.2_Missense_Mutation_p.R494W|CPNE1_uc002xdm.2_Missense_Mutation_p.R494W	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	494	VWFA.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			AATGCCTCCCGAGGGGCCTGC	0.572		NA											27	67					0	0	0	0
MATN4	8785	broad.mit.edu	37	20	43929779	43929779	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr20:43929779C>T	uc002xnn.2	-	5	1039	c.852G>A	c.(850-852)GAG>GAA	p.E284E	MATN4_uc002xno.2_Silent_p.E243E|MATN4_uc002xnp.2_Intron|MATN4_uc010zwr.1_Silent_p.E232E|MATN4_uc002xnr.1_Silent_p.E284E	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	325	EGF-like 3.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				AGTCATGGCCCTCTCTGCAGT	0.582		NA									OREG0025977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	51					0	0	0	0
DOPEY2	9980	broad.mit.edu	37	21	37617523	37617523	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr21:37617523G>A	uc002yvg.2	+	19	3324	c.3245G>A	c.(3244-3246)GGC>GAC	p.G1082D	DOPEY2_uc011aeb.1_Missense_Mutation_p.G1031D|DOPEY2_uc002yvh.2_5'UTR	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1082					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CCGCTGCGAGGCGAGCTGAGC	0.632		NA											4	34					0	0	0	0
MICAL3	57553	broad.mit.edu	37	22	18384651	18384651	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr22:18384651G>A	uc002zng.3	-	5	1037	c.684C>T	c.(682-684)ACC>ACT	p.T228T	MICAL3_uc011agl.1_Silent_p.T228T|MICAL3_uc002znh.2_Silent_p.T228T|MICAL3_uc002znj.1_5'UTR|MICAL3_uc002znk.1_Silent_p.T228T|MICAL3_uc002znl.1_5'UTR|MICAL3_uc010grf.2_Silent_p.T228T|MICAL3_uc011agm.1_Silent_p.T228T	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	228						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		TACCTTCCAAGGTGTTCCTCC	0.562		NA											6	29					0	0	0	0
HIRA	7290	broad.mit.edu	37	22	19344526	19344526	+	Silent	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr22:19344526G>T	uc002zpf.1	-	19	2503	c.2283C>A	c.(2281-2283)TCC>TCA	p.S761S	HIRA_uc011agx.1_Silent_p.S627S|HIRA_uc010grn.1_Intron|HIRA_uc010gro.1_Silent_p.S717S|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	761	Interaction with PAX3 (By similarity).|Interaction with histone H2B.|Interaction with histone H4.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					GACCACAGGTGGAGAACACTG	0.592		NA											15	166					1.15e-07	2.2e-07	1	0
GGT5	2687	broad.mit.edu	37	22	24640644	24640644	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr22:24640644C>G	uc002zzo.3	-	1	467	c.50G>C	c.(49-51)GGG>GCG	p.G17A	GGT5_uc002zzp.3_Missense_Mutation_p.G17A|GGT5_uc002zzr.3_Missense_Mutation_p.G17A|GGT5_uc002zzq.3_Missense_Mutation_p.G17A|GGT5_uc011ajm.1_Missense_Mutation_p.G17A|GGT5_uc011ajn.1_RNA	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	17	Helical; Signal-anchor for type II membrane protein; (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						CAGCGCCAGCCCCAGACCCAG	0.662		NA											3	34					0	0	0	0
DEPDC5	9681	broad.mit.edu	37	22	32198787	32198787	+	Silent	SNP	A	A	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr22:32198787A>T	uc003als.2	+	15	1186	c.1044A>T	c.(1042-1044)CTA>CTT	p.L348L	DEPDC5_uc011als.1_Silent_p.L348L|DEPDC5_uc011alu.1_Silent_p.L348L|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.L348L|DEPDC5_uc003alr.1_Silent_p.L348L|DEPDC5_uc011alt.1_Silent_p.L320L	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	348					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TGGACCGCCTACTCATGATCC	0.502		NA											21	56					0	0	0	0
MEI1	150365	broad.mit.edu	37	22	42128529	42128529	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr22:42128529G>A	uc003baz.1	+	11	1278	c.1253G>A	c.(1252-1254)CGT>CAT	p.R418H	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Missense_Mutation_p.R418H|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	418							binding			central_nervous_system(1)|skin(1)	2						GATGCTGGCCGTGCCCTCCAA	0.552		NA											23	39					0	0	0	0
PLXNB2	23654	broad.mit.edu	37	22	50727541	50727541	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr22:50727541C>T	uc003bkv.3	-	4	1205	c.1099G>A	c.(1099-1101)GAG>AAG	p.E367K		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	367	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGCAGGTGCTCCGAGCCACAT	0.692		NA											7	9					0	0	0	0
GNL3	26354	broad.mit.edu	37	3	52723170	52723170	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:52723170G>A	uc003dfd.2	+	6	662	c.489G>A	c.(487-489)GAG>GAA	p.E163E	GNL3_uc011beh.1_RNA|GNL3_uc003dfe.2_Silent_p.E151E|GNL3_uc003dff.2_Silent_p.E151E|SNORD19_uc003dfg.1_5'Flank|SNORD19B_uc010hml.1_5'Flank	NM_014366	NP_055181	Q9BVP2	GNL3_HUMAN	guanine nucleotide binding protein-like 3	163					regulation of cell proliferation	nucleolus	GTP binding|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;6.75e-05)|Kidney(197;0.000611)|KIRC - Kidney renal clear cell carcinoma(197;0.000773)|OV - Ovarian serous cystadenocarcinoma(275;0.048)		AGGTAGAAGAGGCCATTGTCC	0.448		NA											13	83					0	0	0	0
ZNF654	55279	broad.mit.edu	37	3	88188518	88188518	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:88188518C>T	uc003dqv.2	+	1	257	c.58C>T	c.(58-60)CAG>TAG	p.Q20*	CGGBP1_uc003dqu.2_Intron	NM_018293	NP_060763	Q8IZM8	ZN654_HUMAN	zinc finger protein 654	20					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(201;0.0283)		UCEC - Uterine corpus endometrioid carcinoma (27;0.194)|LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00661)		CCAGGCTCATCAGAAAAAAGG	0.383		NA											10	21					0	0	0	0
CEP97	79598	broad.mit.edu	37	3	101476483	101476483	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:101476483G>A	uc003dvk.1	+	9	1060	c.1033G>A	c.(1033-1035)GTC>ATC	p.V345I	CEP97_uc010hpm.1_Missense_Mutation_p.V311I|CEP97_uc011bhf.1_Intron|CEP97_uc003dvl.1_Missense_Mutation_p.V41I|CEP97_uc003dvm.1_Missense_Mutation_p.V183I	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	345	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						TCTAGAACCCGTCATTCAAGT	0.323		NA											10	45					0	0	0	0
CD200R1	131450	broad.mit.edu	37	3	112648206	112648206	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:112648206C>G	uc003dzk.1	-	3	515	c.282G>C	c.(280-282)GAG>GAC	p.E94D	CD200R1_uc003dzj.1_Missense_Mutation_p.E117D|CD200R1_uc011bhx.1_Missense_Mutation_p.E72D|CD200R1_uc003dzl.1_Missense_Mutation_p.E117D|CD200R1_uc003dzm.1_Missense_Mutation_p.E94D	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	94	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TTTCCTTGGTCTCATTTGTTT	0.448		NA											8	109					0	0	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375488	113375488	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:113375488A>G	uc003eam.2	-	7	5452	c.5041T>C	c.(5041-5043)TCA>CCA	p.S1681P	KIAA2018_uc003eal.2_Missense_Mutation_p.S1625P	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1681					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						CTCTGCTCTGAATTAGAAGAT	0.413		NA											100	38					0	0	0	0
EAF2	55840	broad.mit.edu	37	3	121563320	121563320	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:121563320A>G	uc003een.2	+	2	226	c.127A>G	c.(127-129)ATT>GTT	p.I43V	EAF2_uc003eeo.2_5'UTR	NM_018456	NP_060926	Q96CJ1	EAF2_HUMAN	ELL associated factor 2	43	Necessary for interaction with ELL.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	protein binding				0				GBM - Glioblastoma multiforme(114;0.0972)		ACCTGCTTCTATTGACACTTC	0.318		NA											12	85					0	0	0	0
PARP15	165631	broad.mit.edu	37	3	122345843	122345843	+	Silent	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:122345843A>G	uc003efm.2	+	9	1467	c.1401A>G	c.(1399-1401)GCA>GCG	p.A467A	PARP15_uc003efn.2_Intron|PARP15_uc003efo.1_Silent_p.A214A|PARP15_uc003efp.1_Silent_p.A233A|PARP15_uc011bjt.1_Intron	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		ACCTCTCTGCATCACTGAACT	0.353		NA											8	47					0	0	0	0
STAG1	10274	broad.mit.edu	37	3	136221571	136221571	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:136221571G>T	uc003era.1	-	8	1019	c.727C>A	c.(727-729)CAT>AAT	p.H243N	STAG1_uc003erb.1_Missense_Mutation_p.H243N|STAG1_uc003erc.1_Missense_Mutation_p.H17N|STAG1_uc010hua.1_Missense_Mutation_p.H106N|STAG1_uc003erd.2_Missense_Mutation_p.H146N	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	243					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						TTATCCTGATGAATACTGAGG	0.363		NA											9	60					5.49e-09	1.07e-08	1	0
ATR	545	broad.mit.edu	37	3	142278147	142278147	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:142278147C>T	uc003eux.3	-	7	1800	c.1678G>A	c.(1678-1680)GAG>AAG	p.E560K		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	560					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						ATGGTTGCCTCCAGGTCCAGT	0.348		NA						Other_conserved_DNA_damage_response_genes					7	47					0	0	0	0
PLD1	5337	broad.mit.edu	37	3	171451288	171451288	+	Silent	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:171451288T>C	uc003fhs.2	-	6	668	c.552A>G	c.(550-552)GAA>GAG	p.E184E	PLD1_uc003fht.2_Silent_p.E184E	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	184	PX.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	TCAAGTAATCTTCCAGTTGTT	0.284		NA											4	37					0	0	0	0
MFN1	55669	broad.mit.edu	37	3	179082171	179082171	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:179082171C>G	uc003fjs.2	+	6	749	c.623C>G	c.(622-624)TCT>TGT	p.S208C	MFN1_uc010hxb.2_RNA|MFN1_uc003fjt.2_Missense_Mutation_p.S236C|MFN1_uc010hxc.2_Missense_Mutation_p.S61C	NM_033540	NP_284941	Q8IWA4	MFN1_HUMAN	mitofusin 1	208	Cytoplasmic (Potential).				mitochondrial fusion	integral to membrane|mitochondrial outer membrane	GTP binding|GTPase activity			ovary(2)|large_intestine(1)	3	all_cancers(143;1.67e-16)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.00225)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			GTCGCAAACTCTGAATCAACA	0.373		NA											3	36					0	0	0	0
LAMP3	27074	broad.mit.edu	37	3	182871533	182871533	+	Silent	SNP	G	G	A	rs140803277	by1000genomes	TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:182871533G>A	uc003flh.3	-	2	920	c.696C>T	c.(694-696)AAC>AAT	p.N232N		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	232	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			GTCTGCTTCCGTTTAGAACCT	0.502		NA											12	121					0	0	0	0
EIF4G1	1981	broad.mit.edu	37	3	184046477	184046477	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:184046477C>T	uc003fnp.2	+	27	4210	c.4012C>T	c.(4012-4014)CTC>TTC	p.L1338F	EIF4G1_uc003fnt.2_Missense_Mutation_p.L1049F|EIF4G1_uc003fnq.2_Missense_Mutation_p.L1251F|EIF4G1_uc003fnr.2_Missense_Mutation_p.L1174F|EIF4G1_uc010hxx.2_Missense_Mutation_p.L1345F|EIF4G1_uc003fns.2_Missense_Mutation_p.L1298F|EIF4G1_uc010hxy.2_Missense_Mutation_p.L1345F|EIF4G1_uc003fnv.3_Missense_Mutation_p.L1339F|EIF4G1_uc003fnu.3_Missense_Mutation_p.L1338F|EIF4G1_uc003fnw.2_Missense_Mutation_p.L1345F|EIF4G1_uc003fnx.2_Missense_Mutation_p.L1143F|EIF4G1_uc003fny.3_Missense_Mutation_p.L1142F|EIF4G1_uc003foa.2_Missense_Mutation_p.L10F	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	1338	MI.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCACGTGTGGCTCTACCTAGC	0.532		NA											8	189					0	0	0	0
FGF12	2257	broad.mit.edu	37	3	191888366	191888366	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:191888366C>T	uc003fsx.2	-	4	1320	c.494G>A	c.(493-495)CGC>CAC	p.R165H	FGF12_uc003fsy.2_Missense_Mutation_p.R103H	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	165					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		TTCTTGCTGGCGGTACAGTGT	0.393		NA											13	293					0	0	0	0
ZDHHC19	131540	broad.mit.edu	37	3	195925231	195925231	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:195925231G>A	uc003fwc.2	-	7	979	c.865C>T	c.(865-867)CTC>TTC	p.L289F	ZDHHC19_uc010hzz.2_RNA|ZDHHC19_uc010iaa.2_RNA|ZDHHC19_uc010iab.2_Intron	NM_001039617	NP_001034706	Q8WVZ1	ZDH19_HUMAN	zinc finger, DHHC domain containing 19	289						integral to membrane	acyltransferase activity|zinc ion binding			ovary(3)	3	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.89e-25)|all cancers(36;1.46e-23)|OV - Ovarian serous cystadenocarcinoma(49;2.1e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0022)		GGGGGGTTGAGAGCAGAGGGG	0.632		NA											9	50					0	0	0	0
SENP5	205564	broad.mit.edu	37	3	196612534	196612534	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:196612534C>T	uc003fwz.3	+	2	731	c.482C>T	c.(481-483)CCA>CTA	p.P161L	SENP5_uc011bty.1_Missense_Mutation_p.P161L	NM_152699	NP_689912	Q96HI0	SENP5_HUMAN	SUMO1/sentrin specific peptidase 5	161					cell cycle|cell division|proteolysis	nucleolus	cysteine-type peptidase activity			breast(2)|lung(1)	3	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.14e-24)|all cancers(36;2.1e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.004)		AGGACAGACCCACAACCTTCT	0.468		NA											5	61					0	0	0	0
WFS1	7466	broad.mit.edu	37	4	6302536	6302536	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr4:6302536C>T	uc003giy.2	+	8	1180	c.1014C>T	c.(1012-1014)ATC>ATT	p.I338I	WFS1_uc003gix.2_Silent_p.I338I|WFS1_uc003giz.2_Silent_p.I156I	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	338					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		ACCTCACCATCGACTTCTTCG	0.562		NA											22	55					0	0	0	0
FAM13A	10144	broad.mit.edu	37	4	89827587	89827587	+	Silent	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr4:89827587G>C	uc003hse.1	-	6	994	c.786C>G	c.(784-786)CCC>CCG	p.P262P	FAM13A_uc003hsf.1_Silent_p.P53P|FAM13A_uc003hsh.1_Silent_p.P76P	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	262					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TTAAAAGGATGGGCAGGGAGT	0.368		NA											20	258					0	0	0	0
GRID2	2895	broad.mit.edu	37	4	94145828	94145828	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr4:94145828G>A	uc011cdt.1	+	7	1285	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K	GRID2_uc011cdu.1_Missense_Mutation_p.E248K|GRID2_uc010ikz.1_Missense_Mutation_p.E24K	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	343	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TAAGAAGCTGGAGGACCGAAA	0.443		NA											10	18					0	0	0	0
QRFPR	84109	broad.mit.edu	37	4	122250599	122250599	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr4:122250599T>G	uc010inj.1	-	6	1545	c.1166A>C	c.(1165-1167)GAA>GCA	p.E389A	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_3'UTR	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	389	Cytoplasmic (Potential).					plasma membrane	neuropeptide Y receptor activity				0						ACTGAATGCTTCTCCTTTGGT	0.428		NA											13	143					0	0	0	0
SETD7	80854	broad.mit.edu	37	4	140439120	140439120	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr4:140439120G>C	uc003ihw.2	-	7	1125	c.839C>G	c.(838-840)CCC>CGC	p.P280R		NM_030648	NP_085151	Q8WTS6	SETD7_HUMAN	SET domain-containing protein 7	280	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	histone-lysine N-methyltransferase activity|p53 binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.156)					GTGGTTATAGGGCTCAGGCAC	0.493		NA											7	84					0	0	0	0
TIGD4	201798	broad.mit.edu	37	4	153692050	153692050	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr4:153692050C>T	uc003imy.2	-	2	889	c.107G>A	c.(106-108)GGC>GAC	p.G36D		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	36	HTH psq-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					TTTTTTCTTGCCACTTTCCAC	0.363		NA											5	62					0	0	0	0
KIAA0947	23379	broad.mit.edu	37	5	5465121	5465121	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:5465121C>T	uc003jdm.3	+	13	5896	c.5674C>T	c.(5674-5676)CCA>TCA	p.P1892S		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1892										ovary(1)|central_nervous_system(1)	2						TTGTTCTAGTCCAGCCGTCAG	0.468		NA											6	27					0	0	0	0
CDH10	1008	broad.mit.edu	37	5	24593411	24593411	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:24593411T>G	uc003jgr.1	-	2	521	c.189A>C	c.(187-189)TTA>TTC	p.L63F	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	63	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ATTCTTCAAGTAAGAAAAATT	0.363		NA								HNSCC(23;0.051)			16	94					0	0	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59894929	59894929	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:59894929G>T	uc003jsh.2	-	10	1474	c.1401C>A	c.(1399-1401)AAC>AAA	p.N467K	DEPDC1B_uc011cqm.1_Intron|DEPDC1B_uc011cqn.1_Intron	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	467					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				TTTTCTCTTTGTTGGAGAGTT	0.338		NA											8	13					0.000157383	0.000281906	1	0
APC	324	broad.mit.edu	37	5	112176386	112176386	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:112176386G>A	uc010jby.2	+	16	5475	c.5095G>A	c.(5095-5097)GAG>AAG	p.E1699K	APC_uc011cvt.1_Missense_Mutation_p.E1681K|APC_uc003kpz.3_Missense_Mutation_p.E1699K|APC_uc003kpy.3_Missense_Mutation_p.E1699K|APC_uc010jbz.2_Missense_Mutation_p.E1416K|APC_uc010jca.2_Missense_Mutation_p.E999K	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1699	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.K1192fs*3(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		AAGTACAGATGAGGCTCAAGG	0.423		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			6	22					0	0	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139876609	139876609	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:139876609C>G	uc003lfs.1	+	15	2874	c.2750C>G	c.(2749-2751)CCA>CGA	p.P917R	ANKHD1_uc003lfq.1_Missense_Mutation_p.P936R|ANKHD1_uc003lfr.2_Missense_Mutation_p.P917R|ANKHD1_uc003lft.1_Intron|ANKHD1_uc003lfu.1_Missense_Mutation_p.P397R|ANKHD1_uc003lfv.1_Intron	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	917						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTCTCCACCATCGGCAGAA	0.413		NA											32	44					0	0	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201942	140201942	+	Silent	SNP	T	T	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:140201942T>G	uc003lhl.2	+	1	582	c.582T>G	c.(580-582)GTT>GTG	p.V194V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.V194V|PCDHA5_uc003lhj.1_Silent_p.V194V	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	194	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGAGCTGGTTTTGAGGAAAT	0.353		NA											24	38					0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553578	140553578	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:140553578G>A	uc003lit.2	+	1	1336	c.1162G>A	c.(1162-1164)GAT>AAT	p.D388N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	388	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATCCAGGACGATGTCCCCTT	0.468		NA											5	35					0	0	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778379	140778379	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:140778379C>T	uc003lkf.1	+	1	685	c.685C>T	c.(685-687)CGG>TGG	p.R229W	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.R229W	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	229	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACTGAGCTCCGGATCCAGGT	0.547		NA											50	59					0	0	0	0
CYFIP2	26999	broad.mit.edu	37	5	156786087	156786087	+	Silent	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:156786087C>A	uc003lwq.2	+	26	2886	c.2748C>A	c.(2746-2748)ATC>ATA	p.I916I	CYFIP2_uc011ddn.1_Silent_p.I890I|CYFIP2_uc011ddo.1_Silent_p.I720I|CYFIP2_uc003lwr.2_Silent_p.I916I|CYFIP2_uc003lws.2_Silent_p.I916I|CYFIP2_uc003lwt.2_Silent_p.I819I|CYFIP2_uc011ddp.1_Silent_p.I650I	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	941					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCAAGACTATCTGCAGACTCC	0.488		NA											51	73					4.01e-20	8.16e-20	1	0
RNF145	153830	broad.mit.edu	37	5	158588301	158588301	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:158588301G>T	uc003lxp.2	-	10	1912	c.1599C>A	c.(1597-1599)CAC>CAA	p.H533Q	RNF145_uc011ddy.1_Missense_Mutation_p.H547Q|RNF145_uc003lxo.1_Missense_Mutation_p.H561Q|RNF145_uc011ddz.1_Missense_Mutation_p.H550Q|RNF145_uc010jiq.1_Missense_Mutation_p.H563Q	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	533						integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAATATCATTGTGTTTCTCAA	0.433		NA											6	39					2.77e-08	5.32e-08	1	0
UIMC1	51720	broad.mit.edu	37	5	176395738	176395738	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:176395738C>G	uc011dfp.1	-	6	1185	c.1018G>C	c.(1018-1020)GAG>CAG	p.E340Q	UIMC1_uc003mfc.1_Missense_Mutation_p.E217Q|UIMC1_uc003mfd.1_Intron|UIMC1_uc003mfg.1_Intron|UIMC1_uc003mff.1_Intron	NM_016290	NP_057374	Q96RL1	UIMC1_HUMAN	ubiquitin interaction motif containing 1	340	AIR.				double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|negative regulation of transcription, DNA-dependent|positive regulation of DNA repair|response to ionizing radiation|transcription, DNA-dependent	BRCA1-A complex	histone binding|K63-linked polyubiquitin binding			ovary(3)|skin(1)	4	all_cancers(89;7.96e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	Medulloblastoma(196;0.0145)|all_neural(177;0.0325)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTAGCCTGCTCTCCTTGGCCA	0.463		NA											43	49					0	0	0	0
GMDS	2762	broad.mit.edu	37	6	1742785	1742785	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:1742785C>A	uc003mtq.2	-	8	997	c.807G>T	c.(805-807)GAG>GAT	p.E269D		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	269					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		TAACGAAGTCCTCCGGCTCAT	0.448		NA											21	36					3.62e-10	7.1e-10	1	0
KDM1B	221656	broad.mit.edu	37	6	18217997	18217997	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:18217997C>T	uc003nco.1	+	14	1732	c.1657C>T	c.(1657-1659)CGG>TGG	p.R553W	KDM1B_uc003ncn.1_Missense_Mutation_p.R524W|KDM1B_uc003ncp.1_Missense_Mutation_p.R109W|KDM1B_uc003ncq.1_Missense_Mutation_p.R109W	NM_153042	NP_694587	Q8NB78	KDM1B_HUMAN	amine oxidase (flavin containing) domain 1	756					multicellular organismal development|regulation of DNA methylation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-monomethyl-K4 specific)|oxidoreductase activity|zinc ion binding			skin(1)	1						TTTTGTCACTCGGTGGAGCAC	0.418		NA											32	39					0	0	0	0
C6orf62	81688	broad.mit.edu	37	6	24706378	24706378	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:24706378T>C	uc003nel.2	-	5	1184	c.677A>G	c.(676-678)TAT>TGT	p.Y226C		NM_030939	NP_112201	Q9GZU0	CF062_HUMAN	hypothetical protein LOC81688	226						intracellular					0						CTCTGGCATATAAGGACGGAG	0.443		NA											25	21					0	0	0	0
SCGN	10590	broad.mit.edu	37	6	25701545	25701545	+	Silent	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:25701545G>T	uc003nfb.2	+	11	1016	c.813G>T	c.(811-813)GGG>GGT	p.G271G	SCGN_uc010jpz.2_Silent_p.G162G	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	271	EF-hand 6.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						TGTGTCTTGGGCTGAAAATCA	0.463		NA											24	34					7.88e-14	1.59e-13	1	0
HIST1H2AK	8330	broad.mit.edu	37	6	27805943	27805943	+	Missense_Mutation	SNP	G	G	C	rs144042626		TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:27805943G>C	uc003njs.2	-	1	175	c.175C>G	c.(175-177)CTA>GTA	p.L59V	HIST1H2BN_uc003njt.1_5'Flank|HIST1H2BN_uc003nju.1_5'Flank|HIST1H2BN_uc003njv.2_5'Flank	NM_003510	NP_003501	P0C0S8	H2A1_HUMAN	histone cluster 1, H2ak	59					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding			upper_aerodigestive_tract(1)	1						TCGGCGGTTAGGTACTCCAAC	0.667		NA											12	91					0	0	0	0
TNXB	7148	broad.mit.edu	37	6	32020624	32020624	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:32020624C>T	uc003nzl.2	-	26	9134	c.8932G>A	c.(8932-8934)GAC>AAC	p.D2978N		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3025	Fibronectin type-III 22.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTGAAGGAGTCGAAGCGGCCC	0.701		NA											29	20					0	0	0	0
ENPP4	22875	broad.mit.edu	37	6	46107712	46107712	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:46107712G>A	uc003oxy.2	+	2	651	c.392G>A	c.(391-393)AGT>AAT	p.S131N		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	131	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						AACAGATCAAGTGCTGCTGCT	0.413		NA											37	54					0	0	0	0
KIAA1586	57691	broad.mit.edu	37	6	56917579	56917579	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:56917579C>T	uc003pdj.2	+	4	452	c.282C>T	c.(280-282)AGC>AGT	p.S94S	KIAA1586_uc011dxm.1_Silent_p.S67S	NM_020931	NP_065982	Q9HCI6	K1586_HUMAN	hypothetical protein LOC57691	94							nucleic acid binding				0	Lung NSC(77;0.0969)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			ATGAAGTGAGCAAAAATCACT	0.338		NA											10	42					0	0	0	0
LGSN	51557	broad.mit.edu	37	6	63990178	63990178	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:63990178G>A	uc003peh.2	-	4	1312	c.1278C>T	c.(1276-1278)GCC>GCT	p.A426A	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	426					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	CATCTAAGCCGGCAGCAACAG	0.453		NA											14	53					0	0	0	0
HTR1E	3354	broad.mit.edu	37	6	87725635	87725635	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:87725635T>A	uc003pli.2	+	2	1286	c.583T>A	c.(583-585)TTG>ATG	p.L195M		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	195	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	TTATATCCCCTTGACTTTGAT	0.507		NA											9	34					0	0	0	0
SIM1	6492	broad.mit.edu	37	6	100838914	100838914	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:100838914C>T	uc003pqj.3	-	11	1831	c.1624G>A	c.(1624-1626)GCC>ACC	p.A542T	SIM1_uc010kcu.2_Missense_Mutation_p.A542T	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	542	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		GATTCACTGGCCGACCCAGGG	0.438		NA											4	55					0	0	0	0
LAMA4	3910	broad.mit.edu	37	6	112510314	112510314	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:112510314A>G	uc003pvu.2	-	7	1121	c.812T>C	c.(811-813)ATA>ACA	p.I271T	LAMA4_uc003pvv.2_Intron|LAMA4_uc003pvt.2_Intron	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	271	Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		ATTTTTACTTATGGTTGGGCA	0.468		NA											4	21					0	0	0	0
C6orf204	387119	broad.mit.edu	37	6	118887417	118887417	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:118887417T>C	uc003pxz.1	-	3	883	c.295A>G	c.(295-297)ACT>GCT	p.T99A	C6orf204_uc003pya.1_Missense_Mutation_p.T102A|C6orf204_uc003pyb.2_Missense_Mutation_p.T99A|C6orf204_uc011ebj.1_5'UTR|C6orf204_uc003pyc.2_Missense_Mutation_p.T102A|C6orf204_uc011ebl.1_5'UTR	NM_001042475	NP_001035940	Q5SZL2	CF204_HUMAN	chromosome 6 open reading frame 204 isoform a	99						centrosome				breast(1)	1		all_cancers(87;0.0814)|all_epithelial(87;0.115)		GBM - Glioblastoma multiforme(226;0.0114)|all cancers(137;0.035)|OV - Ovarian serous cystadenocarcinoma(136;0.0618)		ACATGGGCAGTAGGAAGAGTA	0.383		NA											6	27					0	0	0	0
OLIG3	167826	broad.mit.edu	37	6	137815177	137815177	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:137815177T>C	uc003qhp.1	-	1	355	c.131A>G	c.(130-132)CAG>CGG	p.Q44R		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	44					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		CATATCGCCCTGCGTGGACGA	0.512		NA											35	63					0	0	0	0
CDCA7L	55536	broad.mit.edu	37	7	21947962	21947962	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:21947962T>G	uc010kuk.2	-	4	587	c.467A>C	c.(466-468)AAA>ACA	p.K156T	CDCA7L_uc003sve.3_Missense_Mutation_p.K122T|CDCA7L_uc010kul.2_Missense_Mutation_p.K110T|CDCA7L_uc003svf.3_Missense_Mutation_p.K155T|CDCA7L_uc011jyk.1_Missense_Mutation_p.K156T	NM_018719	NP_061189	Q96GN5	CDA7L_HUMAN	cell division cycle associated 7-like isoform 1	156					positive regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus					0						TTTATCTGGTTTGTTGGCCAG	0.423		NA											4	59					0	0	0	0
STK31	56164	broad.mit.edu	37	7	23809341	23809341	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:23809341C>A	uc003sws.3	+	13	1746	c.1679C>A	c.(1678-1680)TCA>TAA	p.S560*	STK31_uc003swt.3_Nonsense_Mutation_p.S537*|STK31_uc011jze.1_Nonsense_Mutation_p.S560*|STK31_uc010kuq.2_Nonsense_Mutation_p.S537*	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	560							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AAGACTGAGTCAAGTGTCTGC	0.378		NA											36	96					3.21e-22	6.58e-22	1	0
HECW1	23072	broad.mit.edu	37	7	43590145	43590145	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:43590145C>T	uc003tid.1	+	27	4955	c.4350C>T	c.(4348-4350)CGC>CGT	p.R1450R	HECW1_uc011kbi.1_Silent_p.R1416R	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1450	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GGGTGGAGCGCGGCGTGGTAC	0.627		NA											8	6					0	0	0	0
SEMA3C	10512	broad.mit.edu	37	7	80432017	80432017	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:80432017C>T	uc003uhj.2	-	9	1442	c.880G>A	c.(880-882)GAT>AAT	p.D294N	SEMA3C_uc011kgw.1_Missense_Mutation_p.D312N|SEMA3C_uc011kgx.1_Missense_Mutation_p.D146N	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	294	Sema.				immune response|response to drug	membrane	receptor activity			ovary(1)	1						CCGTCTTCATCTGTTACCGAG	0.383		NA											6	69					0	0	0	0
PCLO	27445	broad.mit.edu	37	7	82784624	82784624	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:82784624C>A	uc003uhx.2	-	2	1622	c.1333G>T	c.(1333-1335)GGG>TGG	p.G445W	PCLO_uc003uhv.2_Missense_Mutation_p.G445W	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	396	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTCCTGGCCCAGGCTGCTGA	0.577		NA											46	87					1.85e-21	3.77e-21	1	0
AKAP9	10142	broad.mit.edu	37	7	91691800	91691800	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:91691800C>T	uc003ulg.2	+	24	6202	c.5977C>T	c.(5977-5979)CAA>TAA	p.Q1993*	AKAP9_uc003ulf.2_Nonsense_Mutation_p.Q1993*|AKAP9_uc003uli.2_Nonsense_Mutation_p.Q1616*	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2005	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGTTGAACAACGTAAGTATTT	0.393		NA	T	BRAF	papillary thyroid								5	56					0	0	0	0
COL1A2	1278	broad.mit.edu	37	7	94054509	94054509	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:94054509C>T	uc003ung.1	+	42	3225	c.2754C>T	c.(2752-2754)AAC>AAT	p.N918N	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	918					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CTGGAGTCAACGGTGCTCCTG	0.522		NA								HNSCC(75;0.22)			4	43					0	0	0	0
TRRAP	8295	broad.mit.edu	37	7	98567840	98567840	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:98567840C>T	uc003upp.2	+	51	7806	c.7597C>T	c.(7597-7599)CGT>TGT	p.R2533C	TRRAP_uc011kis.1_Missense_Mutation_p.R2515C|TRRAP_uc003upr.2_Missense_Mutation_p.R2232C	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2533					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TAGCCACGACCGTGCCGCCTT	0.632		NA											22	74					0	0	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99128782	99128782	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:99128782C>G	uc003uqv.2	+	7	1554	c.1430C>G	c.(1429-1431)TCA>TGA	p.S477*	ZKSCAN5_uc010lfx.2_Nonsense_Mutation_p.S477*|ZKSCAN5_uc003uqw.2_Nonsense_Mutation_p.S477*|ZKSCAN5_uc003uqx.2_Nonsense_Mutation_p.S404*|ZKSCAN5_uc003uqy.2_Nonsense_Mutation_p.S213*	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	477					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					AAGAAAATTTCAGAATATTCA	0.318		NA											11	145					0	0	0	0
ACHE	43	broad.mit.edu	37	7	100491265	100491265	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:100491265C>G	uc003uxd.2	-	1	745	c.589G>C	c.(589-591)GAG>CAG	p.E197Q	ACHE_uc003uxe.2_Missense_Mutation_p.E197Q|ACHE_uc003uxf.2_Missense_Mutation_p.E197Q|ACHE_uc003uxg.2_Missense_Mutation_p.E197Q|ACHE_uc003uxh.2_Missense_Mutation_p.E197Q|ACHE_uc003uxi.2_Missense_Mutation_p.E197Q|ACHE_uc003uxj.1_Missense_Mutation_p.E316Q	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	197					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	CCCGGGGCCTCTCGGCTCCCC	0.652		NA											20	86					0	0	0	0
RAB19	401409	broad.mit.edu	37	7	140125753	140125753	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:140125753G>T	uc010lni.2	+	4	655	c.457G>T	c.(457-459)GGC>TGC	p.G153C	RAB19_uc011krc.1_Missense_Mutation_p.G153C	NM_001008749	NP_001008749	A4D1S5	RAB19_HUMAN	RAB19, member RAS oncogene family	153					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0	Melanoma(164;0.0142)					TGAGAAGTACGGCCTCCTGGC	0.522		NA											42	87					1.63e-23	3.35e-23	1	0
DPP6	1804	broad.mit.edu	37	7	154561126	154561126	+	Splice_Site	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr7:154561126G>C	uc003wlk.2	+	9	1013	c.884_splice	c.e9-1	p.E295_splice	DPP6_uc003wli.2_Splice_Site_p.E231_splice|DPP6_uc003wlm.2_Splice_Site_p.E233_splice|DPP6_uc011kvq.1_Splice_Site_p.E188_splice	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1						cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TTTTCCCTTAGAGGAGATTTT	0.512		NA											8	71					0	0	0	0
CLN8	2055	broad.mit.edu	37	8	1719415	1719415	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:1719415C>T	uc003wpo.3	+	2	500	c.195C>T	c.(193-195)GAC>GAT	p.D65D		NM_018941	NP_061764	Q9UBY8	CLN8_HUMAN	ceroid-lipofuscinosis, neuronal 8	65	TLC.|Helical; (Potential).				cell death|ceramide biosynthetic process|cholesterol metabolic process|lipid transport|negative regulation of proteolysis|phospholipid metabolic process	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(12;0.0563)|Colorectal(14;0.0815)|Hepatocellular(245;0.0831)		BRCA - Breast invasive adenocarcinoma(11;7.67e-05)|READ - Rectum adenocarcinoma(644;0.0913)		TCTTCTGGGACCTGGCGGCCA	0.612		NA											11	42					0	0	0	0
MYOM2	9172	broad.mit.edu	37	8	2044180	2044180	+	Missense_Mutation	SNP	C	C	T	rs149624495	byFrequency	TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:2044180C>T	uc003wpx.3	+	18	2357	c.2219C>T	c.(2218-2220)TCG>TTG	p.S740L	MYOM2_uc011kwi.1_Missense_Mutation_p.S165L	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	740	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AGTGGTGGCTCGCCCATCCTG	0.557		NA											36	46					0	0	0	0
CSMD1	64478	broad.mit.edu	37	8	4494992	4494992	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:4494992G>A	uc011kwk.1	-	2	564	c.174C>T	c.(172-174)TGC>TGT	p.C58C		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	58	Extracellular (Potential).|CUB 1.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGATCCAGGTGCAGTTGGCAT	0.478		NA											5	79					0	0	0	0
SLC18A1	6570	broad.mit.edu	37	8	20008242	20008242	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:20008242C>A	uc011kyq.1	-	12	1500	c.1029G>T	c.(1027-1029)TTG>TTT	p.L343F	SLC18A1_uc003wzl.2_Missense_Mutation_p.L130F|SLC18A1_uc003wzm.2_Missense_Mutation_p.L343F|SLC18A1_uc011kyr.1_Missense_Mutation_p.L343F|SLC18A1_uc003wzn.2_Missense_Mutation_p.L311F|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.L311F	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	343	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		CACTGGCAGGCAAGAAAGCTA	0.498		NA											20	70					1.56e-12	3.12e-12	1	0
ENTPD4	9583	broad.mit.edu	37	8	23302048	23302048	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:23302048C>G	uc003xdl.2	-	5	648	c.484G>C	c.(484-486)GAG>CAG	p.E162Q	ENTPD4_uc011kzu.1_Missense_Mutation_p.E162Q|ENTPD4_uc003xdm.2_Missense_Mutation_p.E162Q|ENTPD4_uc011kzv.1_Missense_Mutation_p.E162Q|ENTPD4_uc011kzw.1_Missense_Mutation_p.E128Q	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	162	Lumenal (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		GGCACATGCTCTGCAGCAAAG	0.453		NA											4	68					0	0	0	0
STAR	6770	broad.mit.edu	37	8	38005823	38005823	+	Silent	SNP	G	G	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:38005823G>C	uc003xkv.1	-	3	465	c.201C>G	c.(199-201)CTC>CTG	p.L67L	STAR_uc010lwc.1_Silent_p.L29L	NM_001007243	NP_001007244	P49675	STAR_HUMAN	steroidogenic acute regulatory protein isoform	67	START.				C21-steroid hormone biosynthetic process	mitochondrial intermembrane space	cholesterol transporter activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.0151)|Lung NSC(58;0.0295)		READ - Rectum adenocarcinoma(644;0.188)		GGTCACTGTAGAGAGTCTCTT	0.582		NA											3	24					0	0	0	0
BAG4	9530	broad.mit.edu	37	8	38066593	38066593	+	Silent	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:38066593A>G	uc003xky.1	+	4	978	c.696A>G	c.(694-696)TCA>TCG	p.S232S	BAG4_uc003xkz.1_Silent_p.S196S	NM_004874	NP_004865	O95429	BAG4_HUMAN	BCL2-associated athanogene 4	232					anti-apoptosis|apoptosis|protein folding	cytoplasm|nucleus	receptor signaling protein activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.121)				TTCCACAATCAGGACCGACTG	0.498		NA											6	26					0	0	0	0
YTHDF3	253943	broad.mit.edu	37	8	64099527	64099527	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:64099527C>T	uc003xuy.2	+	5	1274	c.958C>T	c.(958-960)CAA>TAA	p.Q320*	YTHDF3_uc010lys.2_Nonsense_Mutation_p.Q264*|YTHDF3_uc003xuz.2_Nonsense_Mutation_p.Q264*|YTHDF3_uc003xva.2_Nonsense_Mutation_p.Q264*|YTHDF3_uc011len.1_Nonsense_Mutation_p.Q264*	NM_152758	NP_689971	Q7Z739	YTHD3_HUMAN	YTH domain family, member 3	320											0	Breast(64;0.0716)	all_cancers(86;0.169)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.146)	BRCA - Breast invasive adenocarcinoma(89;0.161)			CCAACTGCCTCAACAGCAGCC	0.547		NA											8	24					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113585856	113585856	+	Silent	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:113585856G>A	uc003ynu.2	-	24	4075	c.3916C>T	c.(3916-3918)CTA>TTA	p.L1306L	CSMD3_uc003yns.2_Silent_p.L578L|CSMD3_uc003ynt.2_Silent_p.L1266L|CSMD3_uc011lhx.1_Silent_p.L1202L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1306	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GCACCTAGTAGATGAGTCGTT	0.333		NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			22	43					0	0	0	0
COL14A1	7373	broad.mit.edu	37	8	121282288	121282288	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:121282288A>G	uc003yox.2	+	26	3353	c.3088A>G	c.(3088-3090)AAG>GAG	p.K1030E	COL14A1_uc003yoz.2_5'UTR	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1030					cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TAAGGCGGCCAAGGCTGACCT	0.403		NA											5	55					0	0	0	0
TRMT12	55039	broad.mit.edu	37	8	125463521	125463521	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:125463521G>T	uc003yra.3	+	1	474	c.353G>T	c.(352-354)CGG>CTG	p.R118L		NM_017956	NP_060426	Q53H54	TYW2_HUMAN	homolog of yeast tRNA methyltransferase 12	118					tRNA processing		methyltransferase activity			upper_aerodigestive_tract(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GTGGAGGGTCGGGGAGTCAAG	0.557		NA											5	94					0.00116845	0.00203045	1	0
KHDRBS3	10656	broad.mit.edu	37	8	136594129	136594129	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr8:136594129G>A	uc003yuv.2	+	6	1014	c.620G>A	c.(619-621)GGA>GAA	p.G207E	KHDRBS3_uc003yuw.2_Missense_Mutation_p.G207E|KHDRBS3_uc010mek.2_RNA	NM_006558	NP_006549	O75525	KHDR3_HUMAN	KH domain containing, RNA binding, signal	207					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	SH3 domain binding			ovary(2)	2	all_epithelial(106;2.85e-16)|all_neural(2;2.72e-06)|Lung NSC(106;3.95e-06)|all_lung(105;1.11e-05)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.247)			AGGGGAAGGGGAGGAGTTACA	0.483		NA											25	72					0	0	0	0
MPDZ	8777	broad.mit.edu	37	9	13216781	13216781	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:13216781T>C	uc010mia.1	-	9	1339	c.1282A>G	c.(1282-1284)ATT>GTT	p.I428V	MPDZ_uc010mhy.2_Missense_Mutation_p.I428V|MPDZ_uc010mhz.2_Missense_Mutation_p.I428V|MPDZ_uc011lmn.1_Missense_Mutation_p.I428V|MPDZ_uc003zlb.3_Missense_Mutation_p.I428V	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	428	PDZ 3.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		ACTGCTATAATTTGGTCTCCA	0.323		NA											10	12					0	0	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971028	21971028	+	Nonsense_Mutation	SNP	C	C	T	rs121913389		TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:21971028C>T	uc003zpk.2	-	2	542	c.330G>A	c.(328-330)TGG>TGA	p.W110*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.G166R	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	110	ANK 4.				cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.W110*(38)|p.?(13)|p.H83fs*2(2)|p.W110fs*9(1)|p.D105fs*8(1)|p.A68fs*3(1)|p.R107fs*33(1)|p.W110fs*36(1)|p.W110C(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		GCAGACGGCCCCAGGCATCGC	0.736		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			11	15					0	0	0	0
UBAP2	55833	broad.mit.edu	37	9	33927875	33927875	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:33927875G>A	uc003ztq.1	-	20	2404	c.2291C>T	c.(2290-2292)ACC>ATC	p.T764I	UBAP2_uc011loc.1_Missense_Mutation_p.T673I|UBAP2_uc011lod.1_Missense_Mutation_p.T497I|UBAP2_uc011loe.1_Missense_Mutation_p.T519I|UBAP2_uc011lof.1_Missense_Mutation_p.T689I|UBAP2_uc011log.1_3'UTR|UBAP2_uc003ztn.1_Missense_Mutation_p.T3I|UBAP2_uc003zto.1_Missense_Mutation_p.T3I|UBAP2_uc003ztp.1_Missense_Mutation_p.T3I	NM_018449	NP_060919	Q5T6F2	UBAP2_HUMAN	ubiquitin associated protein 2	764										ovary(3)	3			LUSC - Lung squamous cell carcinoma(29;0.00575)	GBM - Glioblastoma multiforme(74;0.168)		GCTGTTCGCGGTGTTCATGCT	0.637		NA											30	44					0	0	0	0
KIF24	347240	broad.mit.edu	37	9	34310897	34310897	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:34310897T>C	uc003zua.3	-	2	568	c.448A>G	c.(448-450)AAA>GAA	p.K150E	KIF24_uc010mkb.2_Missense_Mutation_p.K181E	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	150					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			ATTCCTGTTTTTGTATGGTAC	0.403		NA											28	124					0	0	0	0
S1PR3	1903	broad.mit.edu	37	9	91617076	91617076	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:91617076C>T	uc004aqe.2	+	2	1357	c.961C>T	c.(961-963)CGG>TGG	p.R321W		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	321	Cytoplasmic (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						GGTCAGGGGACGGGGGGCCCG	0.612		NA											19	29					0	0	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900082	112900082	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:112900082C>G	uc004bei.2	+	9	3146	c.2954C>G	c.(2953-2955)TCT>TGT	p.S985C	PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.S753C|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.S753C|PALM2-AKAP2_uc004bel.1_Missense_Mutation_p.S563C|AKAP2_uc011lwi.1_Missense_Mutation_p.S611C|AKAP2_uc004bem.2_Missense_Mutation_p.S611C|PALM2-AKAP2_uc010mtw.1_Missense_Mutation_p.S571C|AKAP2_uc011lwj.1_Missense_Mutation_p.S522C|PALM2-AKAP2_uc004ben.2_Missense_Mutation_p.S522C	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	522							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						GCTGATTTTTCTCTGCCCCAG	0.507		NA											6	101					0	0	0	0
ZNF618	114991	broad.mit.edu	37	9	116810994	116810994	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:116810994A>G	uc004bid.2	+	15	1511	c.1412A>G	c.(1411-1413)GAG>GGG	p.E471G	ZNF618_uc004bic.2_Missense_Mutation_p.E378G|ZNF618_uc011lxi.1_Missense_Mutation_p.E438G|ZNF618_uc011lxj.1_Missense_Mutation_p.E439G|ZNF618_uc010mvb.2_Missense_Mutation_p.E61G	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	471					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AACATCGCAGAGCGGCTGTTG	0.557		NA											25	63					0	0	0	0
ASTN2	23245	broad.mit.edu	37	9	119495733	119495733	+	Silent	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:119495733C>T	uc004bjs.1	-	14	2567	c.2466G>A	c.(2464-2466)GAG>GAA	p.E822E	ASTN2_uc004bjr.1_Silent_p.E818E|ASTN2_uc004bjt.1_Silent_p.E771E	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	822	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GGCACTGCTCCTCCACCGGCA	0.602		NA											33	84					0	0	0	0
CRB2	286204	broad.mit.edu	37	9	126132410	126132410	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:126132410G>A	uc004bnx.1	+	7	1170	c.1078G>A	c.(1078-1080)GAT>AAT	p.D360N	CRB2_uc004bnw.1_Missense_Mutation_p.D360N	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	360	Extracellular (Potential).|EGF-like 8; calcium-binding (Potential).					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GGAAGATGTGGATGAATGCCT	0.572		NA											23	75					0	0	0	0
NUP214	8021	broad.mit.edu	37	9	134073597	134073597	+	Silent	SNP	G	G	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:134073597G>T	uc004cag.2	+	29	4827	c.4716G>T	c.(4714-4716)ACG>ACT	p.T1572T	NUP214_uc004cah.2_Silent_p.T1562T|NUP214_uc004cai.2_Silent_p.T1002T|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Silent_p.T398T|NUP214_uc011mcf.1_Silent_p.T349T|NUP214_uc010mzh.1_Silent_p.T86T|NUP214_uc010mzi.1_Silent_p.T86T	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1572	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CAGCCACCACGGGGGTCCCTG	0.577		NA	T	DEK|SET|ABL1	AML|T-ALL								6	113					0.00116845	0.00203045	1	0
COL5A1	1289	broad.mit.edu	37	9	137593123	137593123	+	Missense_Mutation	SNP	G	G	A	rs142890619	byFrequency	TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:137593123G>A	uc004cfe.2	+	4	980	c.598G>A	c.(598-600)GAC>AAC	p.D200N		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	200	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCCCATGATCGACATCAATGG	0.542		NA											4	22					0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139393659	139393659	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr9:139393659G>A	uc004chz.2	-	32	5987	c.5987C>T	c.(5986-5988)ACG>ATG	p.T1996M		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1996	ANK 3.|Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity	p.T1997M(1)		haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CAGTGGCGTCGTGCCATCATG	0.647		NA	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			6	51					0	0	0	0
ARSF	416	broad.mit.edu	37	X	3021856	3021856	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chrX:3021856C>T	uc004cre.1	+	9	1377	c.1156C>T	c.(1156-1158)CGA>TGA	p.R386*	ARSF_uc004crf.1_Nonsense_Mutation_p.R386*	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	386						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGGAATTGTCCGATGGCCTGG	0.458		NA											12	11					0	0	0	0
MID1	4281	broad.mit.edu	37	X	10437743	10437743	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chrX:10437743C>T	uc004cte.3	-	7	1470	c.1279G>A	c.(1279-1281)GTC>ATC	p.V427I	MID1_uc004ctd.3_Missense_Mutation_p.V138I|MID1_uc004ctg.3_Missense_Mutation_p.V427I|MID1_uc004cth.3_Missense_Mutation_p.V389I|MID1_uc004ctk.3_Missense_Mutation_p.V427I|MID1_uc004cti.3_Missense_Mutation_p.V427I|MID1_uc004ctj.3_Missense_Mutation_p.V427I|MID1_uc011mie.1_RNA|MID1_uc004ctm.1_Missense_Mutation_p.V478I|MID1_uc004ctn.1_Missense_Mutation_p.V427I|MID1_uc004cto.1_Missense_Mutation_p.V389I|MID1_uc004csz.3_Missense_Mutation_p.V99I|MID1_uc004cta.3_Missense_Mutation_p.V183I|MID1_uc004ctb.3_Missense_Mutation_p.V87I|MID1_uc004ctc.3_Missense_Mutation_p.V194I|MID1_uc004ctl.1_Missense_Mutation_p.V183I	NM_033290	NP_150632	O15344	TRI18_HUMAN	midline 1	427	Fibronectin type-III.				microtubule cytoskeleton organization|pattern specification process|positive regulation of stress-activated MAPK cascade	cytoplasm|microtubule|microtubule associated complex|spindle	ligase activity|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|pancreas(1)	3						TCACTAACGACGTTGGCTTGT	0.443		NA											21	37					0	0	0	0
MAGEA1	4100	broad.mit.edu	37	X	152483002	152483002	+	Silent	SNP	A	A	T			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chrX:152483002A>T	uc004fhf.2	-	3	229	c.9T>A	c.(7-9)CTT>CTA	p.L3L		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	3						cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCTGCTCAAGAGACATGA	0.622		NA											36	18					0	0	0	0
HTR6	3362	broad.mit.edu	37	1	20005114	20005126	+	Frame_Shift_Del	DEL	ACGAAGCACAGCA	ACGAAGCACAGCA	-	rs143893286	byFrequency	TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr1:20005114_20005126delACGAAGCACAGCA	uc001bcl.2	+	2	1236_1248	c.769_781delACGAAGCACAGCA	c.(769-783)ACGAAGCACAGCAGGfs	p.T257fs		NM_000871	NP_000862	P50406	5HT6R_HUMAN	5-hydroxytryptamine (serotonin) receptor 6	257_261	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	histamine receptor activity|protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.81e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00117)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)	Granisetron(DB00889)|Ondansetron(DB00904)|Sertindole(DB06144)	GCGTCTAGCCACGAAGCACAGCAGGAAGGCCCT	0.615		NA											12	33	---	---	---	---	NA	NA	NA	NA
CUBN	8029	broad.mit.edu	37	10	17127720	17127720	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr10:17127720delC	uc001ioo.2	-	16	2038	c.1986delG	c.(1984-1986)GGGfs	p.G662fs		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	662	CUB 2.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGCAGAACTTCCCAAGAAGGG	0.458		NA											23	46	---	---	---	---	NA	NA	NA	NA
EGR2	1959	broad.mit.edu	37	10	64573002	64573003	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr10:64573002_64573003delGC	uc010qim.1	-	3	1549_1550	c.1395_1396delGC	c.(1393-1398)CCGCTCfs	p.P465fs	EGR2_uc010qin.1_Frame_Shift_Del_p.P415fs|EGR2_uc001jmi.2_Frame_Shift_Del_p.P465fs|EGR2_uc010qio.1_Frame_Shift_Del_p.P478fs|EGR2_uc009xph.2_Frame_Shift_Del_p.P465fs	NM_001136177	NP_001129649	P11161	EGR2_HUMAN	early growth response 2 protein isoform a	465_466					fat cell differentiation|protein export from nucleus|transcription from RNA polymerase II promoter	cytoplasm|nucleus	chromatin binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					CAAGGGGCGAGCGGCCCTCCGC	0.653		NA											7	119	---	---	---	---	NA	NA	NA	NA
NUMA1	4926	broad.mit.edu	37	11	71727303	71727306	+	Frame_Shift_Del	DEL	CCAG	CCAG	-			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr11:71727303_71727306delCCAG	uc001orl.1	-	15	1415_1418	c.1243_1246delCTGG	c.(1243-1248)CTGGAAfs	p.L415fs	NUMA1_uc009ysw.1_5'UTR|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Frame_Shift_Del_p.L415fs|NUMA1_uc001orn.2_5'UTR|NUMA1_uc009ysx.1_Frame_Shift_Del_p.L415fs|NUMA1_uc001oro.1_Frame_Shift_Del_p.L415fs	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	415_416	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TTCAAGGTTTCCAGCTGGTGGTAT	0.51		NA	T	RARA	APL						OREG0021187	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	80	---	---	---	---	NA	NA	NA	NA
VPS13C	54832	broad.mit.edu	37	15	62165605	62165612	+	Splice_Site	DEL	CCACCTAT	CCACCTAT	-			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr15:62165605_62165612delCCACCTAT	uc002agz.2	-	78	10489	c.10415_splice	c.e78-1	p.G3472_splice	VPS13C_uc002aha.2_Splice_Site_p.G3429_splice|VPS13C_uc002ahb.1_Splice_Site_p.G3472_splice|VPS13C_uc002ahc.1_Splice_Site_p.G3429_splice	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A						protein localization					ovary(2)	2						TCCTGCTGCaccacctatcaaagacaag	0.207		NA											12	172	---	---	---	---	NA	NA	NA	NA
NLRC4	58484	broad.mit.edu	37	2	32475056	32475056	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr2:32475056delT	uc002roi.2	-	4	2123	c.1877delA	c.(1876-1878)AAGfs	p.K626fs	NLRC4_uc002roj.1_Frame_Shift_Del_p.K626fs|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	626					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TTCTGCAGCCTTTTCCCATGA	0.458		NA											7	300	---	---	---	---	NA	NA	NA	NA
DBR1	51163	broad.mit.edu	37	3	137889026	137889034	+	In_Frame_Del	DEL	CAAAATGAC	CAAAATGAC	-			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr3:137889026_137889034delCAAAATGAC	uc003erv.2	-	4	540_548	c.404_412delGTCATTTTG	c.(403-414)GGTCATTTTGAG>GAG	p.GHF135del	DBR1_uc003eru.2_In_Frame_Del_p.GHF84del	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	135_137						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						GGGGGGCACTCAAAATGACCTTAGATTGA	0.316		NA											9	103	---	---	---	---	NA	NA	NA	NA
SLC27A6	28965	broad.mit.edu	37	5	128359396	128359397	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr5:128359396_128359397insA	uc003kuy.2	+	7	1644_1645	c.1248_1249insA	c.(1246-1251)GTGAAAfs	p.V416fs	SLC27A6_uc003kuz.2_Frame_Shift_Ins_p.V416fs	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	416_417					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GTATTCATGTGAAAAAAGGTAA	0.277		NA											20	36	---	---	---	---	NA	NA	NA	NA
SLC16A10	117247	broad.mit.edu	37	6	111498539	111498558	+	Frame_Shift_Del	DEL	ATTGTCACTGCTGGCAGCAG	ATTGTCACTGCTGGCAGCAG	-	rs116051634	by1000genomes	TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:111498539_111498558delATTGTCACTGCTGGCAGCAG	uc003pus.2	+	3	788_807	c.613_632delATTGTCACTGCTGGCAGCAG	c.(613-633)ATTGTCACTGCTGGCAGCAGTfs	p.I205fs	SLC16A10_uc003pur.3_Frame_Shift_Del_p.I205fs|SLC16A10_uc003put.2_5'UTR	NM_018593	NP_061063	Q8TF71	MOT10_HUMAN	solute carrier family 16, member 10	205_211	Helical; (Potential).				aromatic amino acid transport|cellular nitrogen compound metabolic process|ion transport	basolateral plasma membrane|integral to membrane	amino acid transmembrane transporter activity				0		all_cancers(87;0.00172)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0313)|Colorectal(196;0.0466)		OV - Ovarian serous cystadenocarcinoma(136;0.0703)|Epithelial(106;0.12)|all cancers(137;0.132)		GGTGAATGGCATTGTCACTGCTGGCAGCAGTGTCTTCACA	0.482		NA											7	64	---	---	---	---	NA	NA	NA	NA
ECT2L	345930	broad.mit.edu	37	6	139167765	139167769	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-			TCGA-CV-7101-01A-11D-2012-08	TCGA-CV-7101-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	511c3fa8-476b-4ee8-8e93-1ab46bc40dbe	d4851311-cced-411f-bd9c-3179c2580e42	g.chr6:139167765_139167769delCTCTC	uc003qif.1	+	6	957_961	c.854_858delCTCTC	c.(853-858)GCTCTCfs	p.A285fs	ECT2L_uc011edq.1_Frame_Shift_Del_p.A216fs	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	285_286					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						TCTTCATATGCTCTCCGGCCACACT	0.376		NA											10	181	---	---	---	---	NA	NA	NA	NA
