Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
KLHDC7A	127707	broad.mit.edu	37	1	18808991	18808991	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:18808991G>A	uc001bax.2	+	1	1568	c.1516G>A	c.(1516-1518)GGC>AGC	p.G506S	KLHDC7A_uc009vpg.2_Missense_Mutation_p.G288S	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	506	Kelch 2.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGAAGACTCCGGCGGCCTCTG	0.697		NA											14	53					0	0	0	0
ZMYM4	9202	broad.mit.edu	37	1	35881288	35881288	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:35881288C>T	uc001byt.2	+	28	4362	c.4282C>T	c.(4282-4284)CCT>TCT	p.P1428S	ZMYM4_uc009vuu.2_Missense_Mutation_p.P1396S|ZMYM4_uc001byu.2_Missense_Mutation_p.P1104S|ZMYM4_uc009vuv.2_Missense_Mutation_p.P1167S	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1428					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTTCTTCCCACCTTTACAGAA	0.428		NA											22	27					0	0	0	0
ACADM	34	broad.mit.edu	37	1	76205698	76205698	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:76205698G>A	uc001dgw.3	+	7	932	c.502G>A	c.(502-504)GAT>AAT	p.D168N	ACADM_uc010orc.1_3'UTR|ACADM_uc010ord.1_Missense_Mutation_p.D82N|ACADM_uc009wbp.2_Missense_Mutation_p.D172N|ACADM_uc009wbr.2_Missense_Mutation_p.D201N|ACADM_uc010ore.1_Missense_Mutation_p.D132N|ACADM_uc010orf.1_5'UTR|ACADM_uc001dgx.3_Missense_Mutation_p.D82N|ACADM_uc010org.1_Missense_Mutation_p.D38N	NM_000016	NP_000007	P11310	ACADM_HUMAN	medium-chain acyl-CoA dehydrogenase isoform a	168					carnitine biosynthetic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|medium-chain fatty acid catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|identical protein binding|medium-chain-acyl-CoA dehydrogenase activity			breast(2)|ovary(1)|skin(1)	4						AGCAGGCTCTGATGTAGCTGG	0.338		NA											12	16					0	0	0	0
ELTD1	64123	broad.mit.edu	37	1	79357299	79357299	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:79357299G>A	uc001diq.3	-	14	2076	c.1920C>T	c.(1918-1920)CAC>CAT	p.H640H		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	640	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		CCACTGATGCGTGCACAACAT	0.448		NA											11	19					0	0	0	0
HIPK1	204851	broad.mit.edu	37	1	114499787	114499787	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:114499787G>A	uc001eem.2	+	7	1795	c.1634G>A	c.(1633-1635)AGG>AAG	p.R545K	HIPK1_uc001eel.2_Missense_Mutation_p.R545K|HIPK1_uc001een.2_Missense_Mutation_p.R545K|HIPK1_uc001eeo.2_Missense_Mutation_p.R171K|HIPK1_uc001eep.2_Missense_Mutation_p.R151K	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	545					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGCAAGCGGAGGGTTCACATG	0.388		NA											15	28					0	0	0	0
TDRKH	11022	broad.mit.edu	37	1	151751319	151751319	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:151751319G>C	uc009wnb.1	-	6	907	c.725C>G	c.(724-726)TCT>TGT	p.S242C	TDRKH_uc001eyy.2_Missense_Mutation_p.S18C|TDRKH_uc001ezb.3_Missense_Mutation_p.S238C|TDRKH_uc001ezc.3_Missense_Mutation_p.S197C|TDRKH_uc001eza.3_Missense_Mutation_p.S242C|TDRKH_uc001ezd.3_Missense_Mutation_p.S242C|TDRKH_uc010pdn.1_Missense_Mutation_p.S18C	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	242							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTCCATGCTAGAACTGGTGTT	0.542		NA											16	93					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158612629	158612629	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:158612629G>T	uc001fst.1	-	32	4779	c.4580C>A	c.(4579-4581)TCC>TAC	p.S1527Y		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1527	Spectrin 15.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTCTTTGTAGGATTCATCACA	0.443		NA											35	90					1.05e-18	1.22e-18	1	0
DNM3	26052	broad.mit.edu	37	1	172356476	172356476	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:172356476C>T	uc001gie.2	+	19	2438	c.2262C>T	c.(2260-2262)GAC>GAT	p.D754D	DNM3_uc001gif.2_Silent_p.D750D|DNM3_uc001gih.1_Silent_p.D110D	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	760					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						CAGTGGATGACTCCTGGATAC	0.383		NA											6	14					0	0	0	0
RGL1	23179	broad.mit.edu	37	1	183891440	183891440	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:183891440G>A	uc001gqo.2	+	17	2246	c.2089G>A	c.(2089-2091)GAG>AAG	p.E697K	RGL1_uc001gqm.2_Missense_Mutation_p.E732K|RGL1_uc010pog.1_Missense_Mutation_p.E695K|RGL1_uc010poh.1_Missense_Mutation_p.E695K|RGL1_uc010poi.1_Missense_Mutation_p.E668K	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	697	Ras-associating.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CGAGGAGTACGAGCTGGTGCA	0.572		NA									OREG0014047	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	15					0	0	0	0
TPR	7175	broad.mit.edu	37	1	186310164	186310164	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:186310164T>C	uc001grv.2	-	29	4313	c.4016A>G	c.(4015-4017)AAC>AGC	p.N1339S		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1339	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		ATTTACCTGGTTACGTGCTTT	0.393		NA	T	NTRK1	papillary thyroid								19	82					0	0	0	0
RGS21	431704	broad.mit.edu	37	1	192321331	192321331	+	Silent	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:192321331T>C	uc001gsh.2	+	4	417	c.243T>C	c.(241-243)GAT>GAC	p.D81D		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	81	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|skin(1)	2						TTGAAGCTGATGCACCTAAAG	0.378		NA											8	29					0	0	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204228389	204228389	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:204228389C>T	uc001hau.2	-	8	1321	c.1004G>A	c.(1003-1005)CGG>CAG	p.R335Q	PLEKHA6_uc009xaw.1_5'Flank|PLEKHA6_uc009xax.1_5'Flank|PLEKHA6_uc009xay.1_5'Flank|PLEKHA6_uc009xaz.1_5'Flank|PLEKHA6_uc009xba.1_5'Flank|PLEKHA6_uc009xbb.1_5'Flank|PLEKHA6_uc009xbc.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	335	Pro-rich.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GCCTCACCTCCGAAGGTCTTC	0.617		NA											5	23					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237664039	237664039	+	Silent	SNP	A	A	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:237664039A>G	uc001hyl.1	+	21	2352	c.2232A>G	c.(2230-2232)CCA>CCG	p.P744P		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	744	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TAAGCTCACCAAACCAACATC	0.413		NA											56	184					0	0	0	0
SDCCAG8	10806	broad.mit.edu	37	1	243437866	243437867	+	Missense_Mutation	DNP	AC	AC	TT			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:243437866_243437867AC>TT	uc001hzw.2	+	4	484_485	c.328_329AC>TT	c.(328-330)ACC>TTC	p.T110F	SDCCAG8_uc010pyk.1_Intron|SDCCAG8_uc010pyl.1_Intron	NM_006642	NP_006633	Q86SQ7	SDCG8_HUMAN	serologically defined colon cancer antigen 8	110					establishment of cell polarity|G2/M transition of mitotic cell cycle|tube formation	cell-cell junction|centriole|cytosol	protein binding				0	all_cancers(71;0.000545)|all_epithelial(71;0.000509)|all_lung(81;0.0821)|Ovarian(71;0.0919)|all_neural(11;0.101)|Breast(184;0.218)	all_cancers(173;0.00395)	all cancers(7;1.58e-07)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00392)	COAD - Colon adenocarcinoma(196;0.145)		ACATGAGGAAACCAATATGCCT	0.287		NA											6	35					0	0	0	0
NLRP3	114548	broad.mit.edu	37	1	247588430	247588430	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:247588430T>G	uc001icr.2	+	5	1823	c.1685T>G	c.(1684-1686)CTG>CGG	p.L562R	NLRP3_uc001ics.2_Missense_Mutation_p.L562R|NLRP3_uc001icu.2_Missense_Mutation_p.L562R|NLRP3_uc001icw.2_Missense_Mutation_p.L562R|NLRP3_uc001icv.2_Missense_Mutation_p.L562R|NLRP3_uc010pyw.1_Missense_Mutation_p.L560R|NLRP3_uc001ict.1_Missense_Mutation_p.L560R	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	562					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ACAGTCCTTCTGGAAAACTAT	0.478		NA											6	25					0	0	0	0
OR2T4	127074	broad.mit.edu	37	1	248525602	248525602	+	Silent	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:248525602C>A	uc001ieh.1	+	1	720	c.720C>A	c.(718-720)CTC>CTA	p.L240L		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	240	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCATGCTCCTCATCCCTGTGG	0.478		NA											27	83					8.58e-18	9.95e-18	1	0
GAD2	2572	broad.mit.edu	37	10	26581498	26581498	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:26581498G>A	uc001isp.2	+	14	1994	c.1491G>A	c.(1489-1491)GGG>GGA	p.G497G	GAD2_uc001isq.2_Silent_p.G497G	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	497					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	TGTTTGATGGGAAGGTATGTA	0.388		NA											8	35					0	0	0	0
ZNF438	220929	broad.mit.edu	37	10	31138093	31138093	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:31138093C>G	uc010qdz.1	-	7	1676	c.1241G>C	c.(1240-1242)AGA>ACA	p.R414T	ZNF438_uc001ivn.2_Missense_Mutation_p.R365T|ZNF438_uc010qdy.1_Missense_Mutation_p.R404T|ZNF438_uc001ivo.3_5'UTR|ZNF438_uc009xlg.2_Missense_Mutation_p.R414T|ZNF438_uc001ivp.3_Missense_Mutation_p.R404T|ZNF438_uc010qea.1_Missense_Mutation_p.R414T|ZNF438_uc010qeb.1_Missense_Mutation_p.R414T|ZNF438_uc010qec.1_5'UTR	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	414					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				ATTTTTTACTCTTTCTTTACC	0.378		NA											9	43					0	0	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37431034	37431034	+	Silent	SNP	T	T	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:37431034T>G	uc001iza.1	+	7	1140	c.1041T>G	c.(1039-1041)TCT>TCG	p.S347S		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	403						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGAAACATCTGAGAAATTTA	0.433		NA											9	58					0	0	0	0
BMS1	9790	broad.mit.edu	37	10	43285840	43285840	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:43285840G>A	uc001jaj.2	+	5	875	c.517G>A	c.(517-519)GTA>ATA	p.V173I		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	173					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						CATCTGTCAAGTACATGGCTT	0.378		NA											24	71					0	0	0	0
OR13A1	79290	broad.mit.edu	37	10	45799763	45799763	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:45799763C>T	uc001jcc.1	-	4	417	c.108G>A	c.(106-108)TCG>TCA	p.S36S	OR13A1_uc001jcd.1_Silent_p.S32S	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	36	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGGGTGCTCCGAAAAGCCCT	0.527		NA											5	24					0	0	0	0
C10orf72	196740	broad.mit.edu	37	10	50285363	50285363	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:50285363C>T	uc001jhf.2	-	4	564	c.535G>A	c.(535-537)GTG>ATG	p.V179M		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	179	Extracellular (Potential).					integral to membrane|plasma membrane					0						ACAGCATACACATAGAGATCT	0.512		NA											6	25					0	0	0	0
OGDHL	55753	broad.mit.edu	37	10	50946288	50946288	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:50946288C>T	uc001jie.2	-	18	2482	c.2340G>A	c.(2338-2340)GCG>GCA	p.A780A	OGDHL_uc009xog.2_Silent_p.A807A|OGDHL_uc010qgt.1_Silent_p.A723A|OGDHL_uc010qgu.1_Silent_p.A571A	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	780					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TTTCGGGCCTCGCTGACGAGT	0.617		NA											4	27					0	0	0	0
HK1	3098	broad.mit.edu	37	10	71103643	71103643	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:71103643C>T	uc001jpl.3	+	2	225	c.124C>T	c.(124-126)CGC>TGC	p.R42C	HK1_uc009xqc.1_3'UTR|HK1_uc001jpg.3_Missense_Mutation_p.R30C|HK1_uc001jph.3_Missense_Mutation_p.R46C|HK1_uc001jpi.3_Missense_Mutation_p.R46C|HK1_uc001jpj.3_Missense_Mutation_p.R77C|HK1_uc001jpk.3_Missense_Mutation_p.R41C|HK1_uc009xqd.2_5'UTR	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	42	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						TATCATGACTCGCTTCAGGAA	0.498		NA											8	112					0	0	0	0
PNLIPRP2	5408	broad.mit.edu	37	10	118396336	118396336	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:118396336T>C	uc001lcq.2	+	12	1003	c.980T>C	c.(979-981)ATG>ACG	p.M327T	PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	326					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		TGCCCCAAAATGGGGCACTAT	0.403		NA											5	9					0	0	0	0
C10orf82	143379	broad.mit.edu	37	10	118425293	118425293	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr10:118425293C>G	uc001lcr.2	-	3	155	c.100G>C	c.(100-102)GAC>CAC	p.D34H	C10orf82_uc001lcs.1_Missense_Mutation_p.D34H	NM_144661	NP_653262	Q8WW14	CJ082_HUMAN	hypothetical protein LOC143379	34											0				all cancers(201;0.0143)		TGGTTCATGTCATCCTCCTTG	0.517		NA											8	39					0	0	0	0
OR51B2	79345	broad.mit.edu	37	11	5345347	5345347	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:5345347G>A	uc001mao.1	-	1	236	c.181C>T	c.(181-183)CTC>TTC	p.L61F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCATGGTGAGGAAGTAGTAC	0.512		NA											9	66					0	0	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136643	40136643	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:40136643T>A	uc001mxa.1	-	2	3164	c.1200A>T	c.(1198-1200)AAA>AAT	p.K400N	LRRC4C_uc001mxc.1_Missense_Mutation_p.K396N|LRRC4C_uc001mxd.1_Missense_Mutation_p.K396N|LRRC4C_uc001mxb.1_Missense_Mutation_p.K396N	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	400	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CTATCCGCACTTTGTACGCCC	0.463		NA											25	132					0	0	0	0
LRP4	4038	broad.mit.edu	37	11	46900560	46900560	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:46900560C>T	uc001ndn.3	-	22	3180	c.3034G>A	c.(3034-3036)GGC>AGC	p.G1012S		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1012	Extracellular (Potential).				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		TGGCTACAGCCGCCATTCTCC	0.567		NA											9	148					0	0	0	0
OR4C46	119749	broad.mit.edu	37	11	51515672	51515672	+	Missense_Mutation	SNP	A	A	C	rs140334906		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:51515672A>C	uc010ric.1	+	1	391	c.391A>C	c.(391-393)ATG>CTG	p.M131L		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTTGCACTATATGACTATCAT	0.478		NA											31	69					0	0	0	0
OR5L1	219437	broad.mit.edu	37	11	55579363	55579363	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:55579363C>T	uc001nhw.1	+	1	421	c.421C>T	c.(421-423)CGT>TGT	p.R141C		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TTGGAAGGTGCGTGTGGAGCT	0.498		NA											15	64					0	0	0	0
OR5R1	219479	broad.mit.edu	37	11	56185142	56185142	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:56185142G>A	uc010rji.1	-	1	567	c.567C>T	c.(565-567)TGC>TGT	p.C189C		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GTGTGTCTGAGCAGGACAGAG	0.428		NA											5	43					0	0	0	0
OR10W1	81341	broad.mit.edu	37	11	58034658	58034658	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:58034658G>T	uc001nmq.1	-	1	1075	c.673C>A	c.(673-675)CGC>AGC	p.R225S		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GCCCGGTGGCGGCCAGCAGCC	0.587		NA											6	43					2.18e-05	2.37e-05	1	0
RTN3	10313	broad.mit.edu	37	11	63517599	63517599	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:63517599C>T	uc001nxq.2	+	4	2854	c.2667C>T	c.(2665-2667)GTC>GTT	p.V889V	RTN3_uc001nxo.2_Silent_p.V93V|RTN3_uc001nxm.2_Silent_p.V112V|RTN3_uc001nxn.2_Silent_p.V870V|RTN3_uc001nxp.2_Silent_p.V93V|RTN3_uc009yov.2_Silent_p.V777V|RTN3_uc010rmt.1_RNA|RTN3_uc010rmu.1_Silent_p.V93V	NM_201428	NP_958831	O95197	RTN3_HUMAN	reticulon 3 isoform b	889	Reticulon.				apoptosis|endoplasmic reticulum tubular network organization|interspecies interaction between organisms|response to stress|vesicle-mediated transport	endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane				ovary(1)	1						TTCTCTCTGTCACCATCAGCT	0.473		NA											5	9					0	0	0	0
C2CD3	26005	broad.mit.edu	37	11	73789513	73789513	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:73789513G>A	uc001ouu.2	-	23	4477	c.4250C>T	c.(4249-4251)CCC>CTC	p.P1417L	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1417				P -> S (in Ref. 1; BAE17137).		centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					ACAATGGATGGGCAGCCACAG	0.493		NA											18	41					0	0	0	0
MOGAT2	80168	broad.mit.edu	37	11	75439149	75439149	+	Missense_Mutation	SNP	C	C	T	rs144185928		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:75439149C>T	uc010rru.1	+	4	610	c.610C>T	c.(610-612)CGG>TGG	p.R204W	MOGAT2_uc001oww.1_Missense_Mutation_p.R204W|MOGAT2_uc010rrv.1_Missense_Mutation_p.R122W	NM_025098	NP_079374	Q3SYC2	MOGT2_HUMAN	monoacylglycerol O-acyltransferase 2	204					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			ovary(2)	2	Ovarian(111;0.103)					GCTGTTACTGCGGAACCGAAA	0.562		NA											5	28					0	0	0	0
SYTL2	54843	broad.mit.edu	37	11	85456724	85456724	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:85456724G>A	uc010rth.1	-	3	621	c.345C>T	c.(343-345)GGC>GGT	p.G115G	SYTL2_uc010rtg.1_Silent_p.G115G|SYTL2_uc010rti.1_Silent_p.G115G|SYTL2_uc010rtj.1_Silent_p.G67G|SYTL2_uc001pbf.3_Silent_p.G115G	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	115					intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		CTTCTACAACGCCAGCCAGCT	0.517		NA											7	78					0	0	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103029735	103029735	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr11:103029735C>T	uc001pho.2	+	28	4501	c.4357C>T	c.(4357-4359)CAC>TAC	p.H1453Y	DYNC2H1_uc001phn.1_Missense_Mutation_p.H1453Y|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1453	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GATTCAGTCTCACCTGAAGAA	0.254		NA											3	21					0	0	0	0
FGF23	8074	broad.mit.edu	37	12	4479716	4479716	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr12:4479716G>A	uc001qmq.1	-	3	695	c.549C>T	c.(547-549)GAC>GAT	p.D183D		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	183					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			GCTCCGAGTCGTCCTCGGCGC	0.682		NA											9	36					0	0	0	0
C12orf36	283422	broad.mit.edu	37	12	13529255	13529255	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr12:13529255C>T	uc001rbs.1	-	2	303	c.85G>A	c.(85-87)GAC>AAC	p.D29N		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		catgaagtgtcttcatcagga	0.06		NA											5	16					0	0	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20905254	20905254	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr12:20905254G>A	uc001rej.3	+	16	2286	c.1931G>A	c.(1930-1932)GGA>GAA	p.G644E	SLCO1C1_uc010sii.1_Silent_p.G678G|SLCO1C1_uc010sij.1_Missense_Mutation_p.G595E|SLCO1C1_uc009zip.2_Silent_p.G512G|SLCO1C1_uc001rei.2_Missense_Mutation_p.G644E|SLCO1C1_uc010sik.1_Silent_p.G560G	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	644	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					ATATATCTGGGACTAACTGTG	0.303		NA											4	23					0	0	0	0
ACCN2	41	broad.mit.edu	37	12	50471784	50471784	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr12:50471784C>T	uc001rvw.2	+	5	940	c.711C>T	c.(709-711)GAC>GAT	p.D237D	ACCN2_uc001rvv.2_Silent_p.D237D|ACCN2_uc009zln.2_Silent_p.D28D|ACCN2_uc009zlo.2_Silent_p.D237D	NM_001095	NP_001086	P78348	ACCN2_HUMAN	amiloride-sensitive cation channel 2, neuronal	237	Extracellular (By similarity).				calcium ion transport|response to pH|signal transduction	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(1)	1					Amiloride(DB00594)	TTCCCCTAGACGAGACGTCCT	0.567		NA											12	69					0	0	0	0
R3HDM2	22864	broad.mit.edu	37	12	57660592	57660592	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr12:57660592G>A	uc009zpm.1	-	17	2046	c.2011C>T	c.(2011-2013)CCC>TCC	p.P671S	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Missense_Mutation_p.P366S|R3HDM2_uc001snr.2_Missense_Mutation_p.P398S|R3HDM2_uc001sns.2_Missense_Mutation_p.P671S|R3HDM2_uc001snt.2_Missense_Mutation_p.P685S|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	671	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						GAGCCAGGGGGTTGCAGAAAC	0.552		NA											5	16					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78516145	78516145	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr12:78516145G>A	uc001syp.2	+	16	4348	c.4175G>A	c.(4174-4176)GGC>GAC	p.G1392D	NAV3_uc001syo.2_Missense_Mutation_p.G1392D|NAV3_uc010sub.1_Missense_Mutation_p.G892D|NAV3_uc009zsf.2_Intron	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1392	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CTGACCACAGGCACTCACGAG	0.547		NA								HNSCC(70;0.22)			14	79					0	0	0	0
ACACB	32	broad.mit.edu	37	12	109660402	109660402	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr12:109660402A>G	uc001tob.2	+	25	3774	c.3655A>G	c.(3655-3657)AAA>GAA	p.K1219E	ACACB_uc001toc.2_Missense_Mutation_p.K1219E	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1219					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CGAGCACTGCAAAGTGGCCCT	0.622		NA											7	26					0	0	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751321	19751321	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr13:19751321G>C	uc009zzj.2	-	4	851	c.802C>G	c.(802-804)CCC>GCC	p.P268A		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	268					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GTGGCCAGGGGGAAGTGGATG	0.617		NA											32	80					0	0	0	0
SPATA13	221178	broad.mit.edu	37	13	24868931	24868931	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr13:24868931G>A	uc001upg.1	+	9	1667	c.1260G>A	c.(1258-1260)CTG>CTA	p.L420L	SPATA13_uc001upd.1_Silent_p.L1045L|C1QTNF9_uc001upe.2_RNA|SPATA13_uc010tcy.1_Silent_p.L366L|SPATA13_uc010tcz.1_Silent_p.L304L|SPATA13_uc010tda.1_Silent_p.L364L|SPATA13_uc001uph.2_Silent_p.L342L|SPATA13_uc010tdb.1_Silent_p.L280L|SPATA13_uc009zzz.1_Intron|SPATA13_uc001upi.1_5'Flank	NM_153023	NP_694568	Q96N96	SPT13_HUMAN	spermatogenesis associated 13	420	DH.				cell migration|filopodium assembly|lamellipodium assembly|regulation of cell migration|regulation of Rho protein signal transduction	cytoplasm|filopodium|lamellipodium|ruffle membrane	protein binding|Rac guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		all_cancers(29;4.05e-15)|all_lung(29;2.77e-14)|all_epithelial(30;7.77e-13)|Lung SC(185;0.0279)		all cancers(112;0.00616)|Epithelial(112;0.0195)|OV - Ovarian serous cystadenocarcinoma(117;0.0705)|Lung(94;0.231)		TGGCCTGTCTGATCAACGAGC	0.488		NA											11	47					0	0	0	0
FLT1	2321	broad.mit.edu	37	13	28959121	28959121	+	Missense_Mutation	SNP	C	C	T	rs137937570		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr13:28959121C>T	uc001usb.3	-	14	2302	c.2017G>A	c.(2017-2019)GCC>ACC	p.A673T	FLT1_uc010aar.1_Missense_Mutation_p.A673T	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	673	Ig-like C2-type 7.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CTGCTGATGGCCACTGTGTGA	0.448		NA											25	70					0	0	0	0
PDS5B	23047	broad.mit.edu	37	13	33247377	33247377	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr13:33247377G>C	uc010abf.2	+	8	888	c.730G>C	c.(730-732)GGG>CGG	p.G244R	PDS5B_uc001uuo.2_Missense_Mutation_p.G244R|PDS5B_uc010abg.2_RNA|PDS5B_uc010teb.1_5'Flank	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	244					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		TCTGATGCTTGGGAAAACATC	0.353		NA											18	49					0	0	0	0
OR4N2	390429	broad.mit.edu	37	14	20295797	20295797	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr14:20295797G>C	uc010tkv.1	+	1	190	c.190G>C	c.(190-192)GGC>CGC	p.G64R		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTCTTTCTGGGCAACTTGGC	0.468		NA											92	538					0	0	0	0
OR4E2	26686	broad.mit.edu	37	14	22134074	22134074	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr14:22134074C>T	uc010tmd.1	+	1	778	c.778C>T	c.(778-780)CGG>TGG	p.R260W		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		CATCTATACTCGGCCAGACAC	0.512		NA											20	13					0	0	0	0
PCK2	5106	broad.mit.edu	37	14	24566219	24566219	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr14:24566219C>T	uc001wlt.2	+	2	280	c.148C>T	c.(148-150)CAC>TAC	p.H50Y	NRL_uc001wlp.2_5'Flank|NRL_uc001wlq.2_Intron|PCK2_uc001wlr.1_Missense_Mutation_p.H62Y|PCK2_uc001wls.2_Missense_Mutation_p.H50Y|PCK2_uc010tnw.1_Intron|PCK2_uc010ald.2_5'UTR|PCK2_uc010ale.2_5'UTR|PCK2_uc010tnx.1_5'UTR|PCK2_uc001wlu.3_5'UTR	NM_004563	NP_004554	Q16822	PCKGM_HUMAN	mitochondrial phosphoenolpyruvate carboxykinase	50					gluconeogenesis	mitochondrial matrix	GTP binding|metal ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0184)		TTTTGTAGAGCACAGTGCCCG	0.587		NA											4	61					0	0	0	0
LTB4R	1241	broad.mit.edu	37	14	24785327	24785327	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr14:24785327C>G	uc001wos.2	+	2	791	c.470C>G	c.(469-471)ACA>AGA	p.T157R	LTB4R_uc010alp.2_Missense_Mutation_p.T157R|LTB4R_uc001wou.2_Missense_Mutation_p.T157R	NM_001143919	NP_001137391	Q15722	LT4R1_HUMAN	leukotriene B4 receptor	157	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular component movement|immune response|inflammatory response|muscle contraction	integral to plasma membrane	nucleotide binding				0				GBM - Glioblastoma multiforme(265;0.018)		GCGTACCGCACAGTAGTGCCC	0.632		NA											43	37					0	0	0	0
TSHR	7253	broad.mit.edu	37	14	81609450	81609450	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr14:81609450G>A	uc001xvd.1	+	10	1204	c.1048G>A	c.(1048-1050)GCT>ACT	p.A350T		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	350	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	TCATAACAACGCTCATTATTA	0.448		NA	Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						8	61					0	0	0	0
TRIP11	9321	broad.mit.edu	37	14	92491671	92491671	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr14:92491671G>A	uc001xzy.2	-	3	1083	c.295C>T	c.(295-297)CAA>TAA	p.Q99*		NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	99	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		TGTTGAAGTTGATTTCGGTAA	0.308		NA	T	PDGFRB	AML								6	30					0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105416847	105416847	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr14:105416847G>A	uc010axc.1	-	7	5061	c.4941C>T	c.(4939-4941)GCC>GCT	p.A1647A	AHNAK2_uc001ypx.2_Silent_p.A1547A	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1647						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCGCCTTGTCGGCCAGGGACA	0.607		NA											99	115					0	0	0	0
FAM98B	283742	broad.mit.edu	37	15	38773502	38773502	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr15:38773502G>T	uc001zkb.1	+	7	774	c.739G>T	c.(739-741)GAT>TAT	p.D247Y	FAM98B_uc001zkc.2_Missense_Mutation_p.D247Y	NM_001042429	NP_001035894	Q52LJ0	FA98B_HUMAN	family with sequence similarity 98, member B	247						tRNA-splicing ligase complex	protein binding			ovary(1)	1		all_cancers(109;3.11e-17)|all_epithelial(112;2.64e-15)|Lung NSC(122;2.11e-11)|all_lung(180;5.61e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;9e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0209)		GGTAAAAACAGATGATATAGC	0.328		NA											7	25					8.13e-05	8.76e-05	1	0
NR2F2	7026	broad.mit.edu	37	15	96880846	96880846	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr15:96880846C>T	uc010uri.1	+	3	2464	c.1240C>T	c.(1240-1242)CAA>TAA	p.Q414*	NR2F2_uc002btp.2_Nonsense_Mutation_p.Q281*|NR2F2_uc010urj.1_Nonsense_Mutation_p.Q261*|NR2F2_uc010urk.1_Nonsense_Mutation_p.Q261*	NM_021005	NP_066285	P24468	COT2_HUMAN	nuclear receptor subfamily 2, group F, member 2	414	Interaction with ZFPM2 (By similarity).|Important for dimerization.|Ligand-binding (By similarity).				lipid metabolic process|negative regulation of cyclin-dependent protein kinase activity|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment	nucleus	ligand-regulated transcription factor activity|protein homodimerization activity|retinoic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(1)	3	Lung NSC(78;0.0186)|Melanoma(26;0.0195)|all_lung(78;0.0297)		OV - Ovarian serous cystadenocarcinoma(32;0.0856)			TATGGCAATTCAATAAATAAA	0.378		NA											12	83					0	0	0	0
ABCC1	4363	broad.mit.edu	37	16	16170205	16170205	+	Silent	SNP	C	C	T	rs150333922	by1000genomes	TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr16:16170205C>T	uc010bvi.2	+	15	2110	c.1935C>T	c.(1933-1935)ACC>ACT	p.T645T	ABCC1_uc010bvj.2_Silent_p.T645T|ABCC1_uc010bvk.2_Silent_p.T645T|ABCC1_uc010bvl.2_Silent_p.T645T|ABCC1_uc010bvm.2_Silent_p.T645T|ABCC1_uc002del.3_Silent_p.T529T	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	645	ABC transporter 1.|Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	ACAGCATCACCGTGAGGAATG	0.483		NA											5	11					0	0	0	0
ABCC6	368	broad.mit.edu	37	16	16256934	16256934	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr16:16256934C>T	uc002den.3	-	24	3459	c.3422G>A	c.(3421-3423)CGA>CAA	p.R1141Q	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1141	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GGCCTGGGTTCGGAATGCCCG	0.597		NA											18	55					0	0	0	0
ZNF646	9726	broad.mit.edu	37	16	31090886	31090886	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr16:31090886T>G	uc002eap.2	+	2	3530	c.3241T>G	c.(3241-3243)TGC>GGC	p.C1081G		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1081	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						AGACTTTCTCTGCCCTGTCTG	0.627		NA											47	118					0	0	0	0
ZNF423	23090	broad.mit.edu	37	16	49670062	49670062	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr16:49670062C>T	uc002efs.2	-	5	3299	c.3001G>A	c.(3001-3003)GAG>AAG	p.E1001K	ZNF423_uc010vgn.1_Missense_Mutation_p.E884K	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	1001					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				ATAAACTCCTCCTCGCTCTGC	0.592		NA											6	11					0	0	0	0
CDH8	1006	broad.mit.edu	37	16	61687979	61687979	+	Silent	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr16:61687979G>T	uc002eog.1	-	12	2185	c.1933C>A	c.(1933-1935)CGG>AGG	p.R645R		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	645	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TTATGCCGCCGTAGAGTTACA	0.383		NA											13	53					3.04e-14	3.5e-14	1	0
CHST4	10164	broad.mit.edu	37	16	71571468	71571468	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr16:71571468G>T	uc002fan.2	+	2	1069	c.888G>T	c.(886-888)TTG>TTT	p.L296F	CHST4_uc002fao.2_Missense_Mutation_p.L296F	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	296	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						TCGTGGGATTGGAATTCTTGC	0.567		NA									OREG0023923	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	36					0.000274275	0.000291708	1	0
KCTD11	147040	broad.mit.edu	37	17	7256830	7256830	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:7256830T>G	uc002gge.3	+	1	1623	c.569T>G	c.(568-570)GTG>GGG	p.V190G	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	190					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				CGGCGGGAGGTGGTGGGCACC	0.692		NA											6	25					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	rs121913344		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:7577022G>A	uc002gim.2	-	8	1110	c.916C>T	c.(916-918)CGA>TGA	p.R306*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.R306*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.R174*|TP53_uc010cng.1_Nonsense_Mutation_p.R174*|TP53_uc002gii.1_Nonsense_Mutation_p.R174*|TP53_uc010cnh.1_Nonsense_Mutation_p.R306*|TP53_uc010cni.1_Nonsense_Mutation_p.R306*|TP53_uc002gij.2_Nonsense_Mutation_p.R306*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	306	Bipartite nuclear localization signal.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.		R -> Q (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R306*(99)|p.0?(7)|p.?(3)|p.R306R(2)|p.R306fs*39(2)|p.K305fs*1(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TGCTTACCTCGCTTAGTGCTC	0.562	R306*(MFE296_ENDOMETRIUM)|R306*(HCC1937_BREAST)|R306*(MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R306*(RCM1_LARGE_INTESTINE)|R306*(JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			26	34					0	0	0	0
MYH1	4619	broad.mit.edu	37	17	10412811	10412811	+	Silent	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:10412811G>C	uc002gmo.2	-	15	1672	c.1578C>G	c.(1576-1578)CTC>CTG	p.L526L	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	526	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCTTCTCGATGAGCTCGATGC	0.443		NA											32	29					0	0	0	0
C17orf48	56985	broad.mit.edu	37	17	10608831	10608831	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:10608831G>A	uc002gmt.2	+	2	663	c.588G>A	c.(586-588)CTG>CTA	p.L196L	C17orf48_uc002gmu.2_RNA|C17orf48_uc002gmv.2_RNA|C17orf48_uc010vvg.1_Silent_p.L196L	NM_020233	NP_064618	Q3LIE5	ADPRM_HUMAN	ADP-ribose/CDP-alcohol pyrophosphatase	196							ADP-ribose diphosphatase activity|CDP-glycerol diphosphatase activity|metal ion binding				0						ATACGGAACTGAATAGTCCTC	0.383		NA											20	27					0	0	0	0
SLFN5	162394	broad.mit.edu	37	17	33592764	33592764	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:33592764G>A	uc002hjf.3	+	5	2650	c.2533G>A	c.(2533-2535)GTC>ATC	p.V845I	SLFN5_uc010wcg.1_3'UTR	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	845					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		GTTGGACAGTGTCTGTCGATT	0.488		NA											6	41					0	0	0	0
JUP	3728	broad.mit.edu	37	17	39914709	39914709	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:39914709C>T	uc002hxq.2	-	10	1992	c.1715G>A	c.(1714-1716)CGG>CAG	p.R572Q	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Missense_Mutation_p.R572Q|JUP_uc002hxs.2_Missense_Mutation_p.R572Q	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	572					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		CATGGGGTCCCGGGCGAGGAT	0.627		NA											6	41					0	0	0	0
BRCA1	672	broad.mit.edu	37	17	41276072	41276072	+	Silent	SNP	G	G	A	rs80356827		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:41276072G>A	uc002icq.2	-	2	274	c.42C>T	c.(40-42)GTC>GTT	p.V14V	BRCA1_uc010whp.1_Intron|NBR2_uc002idf.2_5'Flank|NBR2_uc010czb.1_5'Flank|NBR2_uc002idg.2_5'Flank|NBR2_uc002idh.2_5'Flank|BRCA1_uc010whl.1_Silent_p.V14V|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_5'UTR|BRCA1_uc002icu.2_Silent_p.V14V|BRCA1_uc010cyx.2_5'UTR|BRCA1_uc002ict.2_Silent_p.V14V|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc002idc.1_Silent_p.V14V|BRCA1_uc010whr.1_5'UTR|BRCA1_uc002idd.2_Silent_p.V14V|BRCA1_uc010cyy.1_Silent_p.V14V|BRCA1_uc010whs.1_Silent_p.V14V|BRCA1_uc010cyz.2_5'UTR|BRCA1_uc010cza.2_Silent_p.V14V|BRCA1_uc010wht.1_Intron	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	14					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TAGCATTAATGACATTTTGTA	0.318		NA	D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			9	35					0	0	0	0
ITGA2B	3674	broad.mit.edu	37	17	42466667	42466667	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:42466667C>G	uc002igt.1	-	1	207	c.175G>C	c.(175-177)GAC>CAC	p.D59H		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	59	Extracellular (Potential).|FG-GAP 1.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	CCATGGCTGTCCTTGTGGAAG	0.587		NA											21	152					0	0	0	0
MYST2	11143	broad.mit.edu	37	17	47895239	47895239	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:47895239G>A	uc002ipm.2	+	9	1147	c.1021G>A	c.(1021-1023)GCT>ACT	p.A341T	MYST2_uc002ipl.1_Missense_Mutation_p.A311T|MYST2_uc010wma.1_Missense_Mutation_p.A202T|MYST2_uc010wmb.1_Missense_Mutation_p.A231T|MYST2_uc010wmc.1_Missense_Mutation_p.A172T|MYST2_uc010wmd.1_Missense_Mutation_p.A185T|MYST2_uc010wme.1_Missense_Mutation_p.A155T|MYST2_uc010wmf.1_Missense_Mutation_p.A6T|MYST2_uc010wmg.1_Intron	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	341					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TAAAACAATTGCTTTTGGCCG	0.393		NA											7	34					0	0	0	0
MTMR4	9110	broad.mit.edu	37	17	56581705	56581705	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:56581705T>C	uc002iwj.2	-	13	1554	c.1444A>G	c.(1444-1446)AAG>GAG	p.K482E		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	482	Myotubularin phosphatase.					cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGGAACTGCTTAAGCAACTGA	0.517		NA											9	70					0	0	0	0
FDXR	2232	broad.mit.edu	37	17	72860034	72860034	+	Silent	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:72860034C>A	uc002jly.2	-	10	1245	c.1158G>T	c.(1156-1158)CGG>CGT	p.R386R	FDXR_uc010wri.1_Silent_p.R334R|FDXR_uc010wrj.1_Silent_p.R384R|FDXR_uc002jlw.2_Silent_p.R143R|FDXR_uc002jlx.2_Silent_p.R392R|FDXR_uc002jmc.2_Silent_p.R358R|FDXR_uc010wrk.1_Silent_p.R417R|FDXR_uc010wrl.1_Silent_p.R429R|FDXR_uc002jma.2_Silent_p.R387R|FDXR_uc010wrm.1_Silent_p.R346R|FDXR_uc002jlz.2_Silent_p.R378R|FDXR_uc002jmb.2_Intron	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	386					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					CATCCATAACCCGGCCCTCCA	0.577		NA											53	136					1.96e-22	2.28e-22	1	0
OTOP2	92736	broad.mit.edu	37	17	72923807	72923807	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:72923807C>A	uc010wrp.1	+	6	646	c.557C>A	c.(556-558)GCG>GAG	p.A186E	OTOP2_uc002jmf.1_3'UTR	NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	186						integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					ATCTGGATGGCGGCCGTGGTG	0.577		NA											10	31					1.59e-06	1.75e-06	1	0
UBE2O	63893	broad.mit.edu	37	17	74392380	74392380	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr17:74392380C>A	uc002jrm.3	-	14	2703	c.2638G>T	c.(2638-2640)GAA>TAA	p.E880*	UBE2O_uc002jrn.3_Nonsense_Mutation_p.E880*|UBE2O_uc002jrl.3_Nonsense_Mutation_p.E484*	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	880	Potential.						ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						GGCACTGCTTCCATCTTCTCC	0.567		NA											59	136					4.96e-44	5.86e-44	1	0
ZNF521	25925	broad.mit.edu	37	18	22804524	22804524	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr18:22804524G>A	uc002kvk.2	-	4	3605	c.3358C>T	c.(3358-3360)CAG>TAG	p.Q1120*	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Nonsense_Mutation_p.Q1120*|ZNF521_uc002kvl.2_Nonsense_Mutation_p.Q900*	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	1120					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TTCTCATTCTGGCCCAAGCCT	0.552		NA	T	PAX5	ALL								4	26					0	0	0	0
LMNB2	84823	broad.mit.edu	37	19	2444428	2444428	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:2444428C>G	uc002lvy.2	-	2	402	c.315G>C	c.(313-315)AGG>AGC	p.R105S	LMNB2_uc002lwa.1_Missense_Mutation_p.R125S	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	105	Rod.|Coil 1B.					nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAACTCTGCCCTCAGCTTCC	0.652		NA											5	21					0	0	0	0
ZNRF4	148066	broad.mit.edu	37	19	5455848	5455848	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:5455848C>G	uc002mca.3	+	1	423	c.346C>G	c.(346-348)CTG>GTG	p.L116V		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	116	Extracellular (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		CTTTGCGGATCTGCCGGCGCT	0.672		NA											21	70					0	0	0	0
FCER2	2208	broad.mit.edu	37	19	7754154	7754154	+	Silent	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:7754154C>A	uc002mhn.2	-	11	1075	c.891G>T	c.(889-891)GCG>GCT	p.A297A	FCER2_uc010xjs.1_Silent_p.A219A|FCER2_uc010xjt.1_Silent_p.A219A|FCER2_uc002mhm.2_Silent_p.A297A	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	297	Extracellular (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						CCATGGACTCCGCGGAACCTT	0.677		NA											7	21					0.00198382	0.00207907	1	0
MUC16	94025	broad.mit.edu	37	19	9006359	9006359	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:9006359C>G	uc002mkp.2	-	45	39863	c.39659G>C	c.(39658-39660)AGA>ACA	p.R13220T	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R37T|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13222	SEA 8.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAAGGTCAGTCTGCAGCCAGA	0.512		NA											16	56					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9065156	9065156	+	Silent	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:9065156T>C	uc002mkp.2	-	3	22494	c.22290A>G	c.(22288-22290)CAA>CAG	p.Q7430Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7432	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGTCTTCACTTGGCCTGGTG	0.488		NA											13	31					0	0	0	0
ZNF627	199692	broad.mit.edu	37	19	11727528	11727528	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:11727528C>T	uc002msk.2	+	4	418	c.210C>T	c.(208-210)CTC>CTT	p.L70L	ZNF627_uc010dyf.2_5'UTR	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	70	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAGAGAGACTCTGTGAAAGTA	0.313		NA											6	30					0	0	0	0
PKN1	5585	broad.mit.edu	37	19	14582517	14582517	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:14582517C>T	uc002myp.2	+	22	2918	c.2750C>T	c.(2749-2751)CCG>CTG	p.P917L	PKN1_uc002myq.2_Missense_Mutation_p.P923L|PKN1_uc002myr.2_Missense_Mutation_p.P257L	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	917	AGC-kinase C-terminal.				activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						ACACTGAGCCCGCCCCGCGAC	0.652		NA											3	16					0	0	0	0
EPS15L1	58513	broad.mit.edu	37	19	16528779	16528779	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:16528779C>T	uc002ndz.1	-	11	1093	c.1087G>A	c.(1087-1089)GAG>AAG	p.E363K	EPS15L1_uc002ndx.2_Missense_Mutation_p.E363K|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Missense_Mutation_p.E253K|EPS15L1_uc010xpf.1_Missense_Mutation_p.E266K|EPS15L1_uc002nea.1_Missense_Mutation_p.E363K|EPS15L1_uc010eah.1_Missense_Mutation_p.E363K|EPS15L1_uc002neb.1_Missense_Mutation_p.E209K|EPS15L1_uc002nec.1_Missense_Mutation_p.E363K	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	363	EH 3.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						GTGCCTCTCTCCGAAGGCGGG	0.592		NA									OREG0025334	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	50					0	0	0	0
CHERP	10523	broad.mit.edu	37	19	16640583	16640583	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:16640583C>T	uc002nei.1	-	8	1079	c.1005G>A	c.(1003-1005)CAG>CAA	p.Q335Q	MED26_uc002nee.2_Intron	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	335	Gln-rich.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						gctgctgttgctgctgctgct	0.547		NA											3	27					0	0	0	0
ZNF208	7757	broad.mit.edu	37	19	22171649	22171649	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:22171649G>T	uc002nqp.2	-	2	215	c.66C>A	c.(64-66)GAC>GAA	p.D22E	ZNF208_uc002nqo.1_Missense_Mutation_p.D22E|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GCTGTGCAGTGTCCAGGCATT	0.398		NA											26	135					6.33e-13	7.23e-13	1	0
ZNF681	148213	broad.mit.edu	37	19	23938239	23938239	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:23938239G>T	uc002nrk.3	-	2	260	c.118C>A	c.(118-120)CTG>ATG	p.L40M	ZNF681_uc002nrl.3_Intron|ZNF681_uc002nrj.3_Intron|ZNF681_uc002nrm.1_5'Flank	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	40	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				AAGAAGACCAGGTTTCTGTAG	0.353		NA											16	111					0.000175454	0.0001878	1	0
ZNF527	84503	broad.mit.edu	37	19	37880679	37880679	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:37880679C>T	uc010efk.1	+	5	1839	c.1728C>T	c.(1726-1728)CAC>CAT	p.H576H	ZNF527_uc002ogf.3_Silent_p.H544H|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	576	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGAGAATTCACGCTGGAGAAA	0.388		NA											16	50					0	0	0	0
GPR77	27202	broad.mit.edu	37	19	47844440	47844440	+	Silent	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:47844440C>G	uc010ela.1	+	2	602	c.384C>G	c.(382-384)CTC>CTG	p.L128L	GPR77_uc002pgk.1_Silent_p.L128L	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	128	Helical; Name=3; (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		TGGCAGCTCTCAGTGCCGACC	0.682		NA											16	92					0	0	0	0
TPRX1	284355	broad.mit.edu	37	19	48305438	48305438	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:48305438C>T	uc002php.1	-	2	901	c.830G>A	c.(829-831)GGC>GAC	p.G277D		NM_198479	NP_940881	Q8N7U7	TPRX1_HUMAN	tetra-peptide repeat homeobox	277	Gly-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;3.02e-09)|all_epithelial(76;7e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000241)|all cancers(93;0.00036)|Epithelial(262;0.0127)|GBM - Glioblastoma multiforme(486;0.048)		TCTGCCTGGGCCTGGGATCTG	0.383		NA											8	8					0	0	0	0
TSKS	60385	broad.mit.edu	37	19	50266465	50266465	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:50266465C>G	uc002ppm.2	-	1	51	c.40G>C	c.(40-42)GAG>CAG	p.E14Q		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	14							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		TCATGGATCTCTTTGGACTGC	0.657		NA											31	48					0	0	0	0
ZNF616	90317	broad.mit.edu	37	19	52619089	52619089	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:52619089C>A	uc002pym.2	-	4	1611	c.1328G>T	c.(1327-1329)GGC>GTC	p.G443V	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	443	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		GTACACCTTGCCACATTTATT	0.388		NA											9	82					5.49e-09	6.2e-09	1	0
ZNF610	162963	broad.mit.edu	37	19	52869650	52869650	+	Missense_Mutation	SNP	C	C	T	rs149251185		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:52869650C>T	uc002pyx.3	+	6	1425	c.1019C>T	c.(1018-1020)GCG>GTG	p.A340V	ZNF610_uc002pyy.3_Missense_Mutation_p.A340V|ZNF610_uc002pyz.3_Missense_Mutation_p.A297V|ZNF610_uc002pza.2_Missense_Mutation_p.A340V	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	340					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		AGTCACACGGCGGAAAAACCT	0.393		NA											6	54					0	0	0	0
ZNF808	388558	broad.mit.edu	37	19	53058461	53058461	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:53058461G>A	uc010epq.1	+	5	2469	c.2292G>A	c.(2290-2292)AAG>AAA	p.K764K	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	764	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		AACCTTACAAGTGTAACGACT	0.443		NA											12	141					0	0	0	0
ZNF835	90485	broad.mit.edu	37	19	57175082	57175082	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr19:57175082C>T	uc010ygo.1	-	2	1551	c.1551G>A	c.(1549-1551)ACG>ACA	p.T517T	ZNF835_uc010ygn.1_Silent_p.T495T	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						TGTCTGCATGCGTCCTCTGGT	0.637		NA											51	116					0	0	0	0
MYT1L	23040	broad.mit.edu	37	2	1805525	1805525	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:1805525C>T	uc002qxe.2	-	23	4046	c.3219G>A	c.(3217-3219)AAG>AAA	p.K1073K	MYT1L_uc002qxd.2_Silent_p.K1071K|MYT1L_uc010ewk.2_Silent_p.K69K	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	1073	Potential.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CATTTAGCTCCTTGATTTCTT	0.323		NA											17	75					0	0	0	0
APOB	338	broad.mit.edu	37	2	21224689	21224689	+	Silent	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:21224689G>T	uc002red.2	-	29	13733	c.13605C>A	c.(13603-13605)ATC>ATA	p.I4535I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4535					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTAACTCCGTGATGTATATCA	0.358		NA											46	69					5.2e-24	6.08e-24	1	0
CENPA	1058	broad.mit.edu	37	2	27016146	27016146	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:27016146G>A	uc002rhr.2	+	4	605	c.422G>A	c.(421-423)TGA>TAA	p.*141*	CENPA_uc002rht.2_RNA|CENPA_uc002rhs.2_Silent_p.*115*	NM_001809	NP_001800	P49450	CENPA_HUMAN	centromere protein A isoform a	141					CenH3-containing nucleosome assembly at centromere|establishment of mitotic spindle orientation|interspecies interaction between organisms|kinetochore assembly|mitotic prometaphase|protein localization to chromosome, centromeric region	condensed nuclear chromosome kinetochore|cytosol|nucleoplasm|nucleosome	chromatin binding|DNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGACTCGGCTGAGCTCCTGCA	0.557		NA											55	98					0	0	0	0
XDH	7498	broad.mit.edu	37	2	31572647	31572647	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:31572647C>T	uc002rnv.1	-	26	2953	c.2874G>A	c.(2872-2874)CAG>CAA	p.Q958Q		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	958					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CCTCAAGCTTCTGGTTGAAGT	0.507		NA											12	100					0	0	0	0
ALMS1	7840	broad.mit.edu	37	2	73678290	73678290	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:73678290G>C	uc002sje.1	+	10	4750	c.4639G>C	c.(4639-4641)GAG>CAG	p.E1547Q	ALMS1_uc002sjf.1_Missense_Mutation_p.E1503Q|ALMS1_uc002sjg.2_Missense_Mutation_p.E933Q|ALMS1_uc002sjh.1_Missense_Mutation_p.E933Q	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1545	22.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AATACCTGAAGAGGCTCTCAG	0.473		NA											24	112					0	0	0	0
DCTN1	1639	broad.mit.edu	37	2	74593384	74593384	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:74593384C>G	uc002skx.2	-	23	3058	c.2747G>C	c.(2746-2748)CGG>CCG	p.R916P	SLC4A5_uc002skl.2_5'Flank|DCTN1_uc002skt.1_5'Flank|DCTN1_uc002skv.2_Missense_Mutation_p.R782P|DCTN1_uc002sku.2_Missense_Mutation_p.R782P|DCTN1_uc002skw.1_Missense_Mutation_p.R892P|DCTN1_uc010ffd.2_Missense_Mutation_p.R896P|DCTN1_uc002sky.2_Missense_Mutation_p.R879P	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	916					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						GCTGGGGGGCCGCTCTGCATC	0.562		NA											30	91					0	0	0	0
WDR54	84058	broad.mit.edu	37	2	74652067	74652067	+	Silent	SNP	A	A	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:74652067A>T	uc002slb.2	+	7	660	c.600A>T	c.(598-600)CCA>CCT	p.P200P		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	200	WD 2.										0						GGTCAGGGCCAGAATTCACAT	0.522		NA											29	103					0	0	0	0
REG3A	5068	broad.mit.edu	37	2	79385808	79385808	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:79385808A>T	uc002sod.1	-	2	419	c.164T>A	c.(163-165)TTT>TAT	p.F55Y	REG3A_uc002soe.1_Missense_Mutation_p.F55Y|REG3A_uc002sof.1_Missense_Mutation_p.F55Y	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	55	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						TGGTGACAAAAACAAGGCATA	0.552		NA											21	45					0	0	0	0
PTCD3	55037	broad.mit.edu	37	2	86344259	86344259	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:86344259G>A	uc002sqw.2	+	6	457	c.391G>A	c.(391-393)GAC>AAC	p.D131N	PTCD3_uc010ytc.1_RNA	NM_017952	NP_060422	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3 precursor	131						mitochondrion	protein binding			ovary(1)	1						TTTTCAGAAGGACATAGCTGA	0.313		NA											14	28					0	0	0	0
SMYD1	150572	broad.mit.edu	37	2	88405860	88405860	+	Missense_Mutation	SNP	G	G	A	rs114851602	byFrequency	TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:88405860G>A	uc002ssr.2	+	8	1000	c.998G>A	c.(997-999)CGG>CAG	p.R333Q	SMYD1_uc002ssq.1_Intron|SMYD1_uc002sss.2_Missense_Mutation_p.R29Q	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	333					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AAATTATGCCGGGAGTGCCTG	0.522		NA											8	41					0	0	0	0
TRIM43	129868	broad.mit.edu	37	2	96260835	96260835	+	Missense_Mutation	SNP	A	A	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:96260835A>G	uc002suv.2	+	3	585	c.449A>G	c.(448-450)AAG>AGG	p.K150R		NM_138800	NP_620155	Q96BQ3	TRI43_HUMAN	tripartite motif-containing 43	150	Potential.					intracellular	zinc ion binding			ovary(1)	1						TTATGGAAAAAGATTCAAGAA	0.403		NA											28	36					0	0	0	0
RANBP2	5903	broad.mit.edu	37	2	109392196	109392196	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:109392196G>C	uc002tem.3	+	24	8427	c.8301G>C	c.(8299-8301)CAG>CAC	p.Q2767H		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2767					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AGAAATCTCAGACAGAAGAAA	0.323		NA											14	83					0	0	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125504962	125504962	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:125504962G>T	uc002tno.2	+	14	2595	c.2231G>T	c.(2230-2232)TGG>TTG	p.W744L	CNTNAP5_uc010flu.2_Missense_Mutation_p.W745L	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	744	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		AAGGATGAATGGTAATGAGAA	0.458		NA											19	88					2.89e-11	3.28e-11	1	0
LRP1B	53353	broad.mit.edu	37	2	141751681	141751681	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:141751681G>A	uc002tvj.1	-	16	3499	c.2527C>T	c.(2527-2529)CAC>TAC	p.H843Y	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	843	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTACATATGTGAGGTAGTGCT	0.408		NA								TSP Lung(27;0.18)			12	38					0	0	0	0
MAP1D	254042	broad.mit.edu	37	2	172926266	172926266	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:172926266C>T	uc002uhk.2	+	2	154	c.81C>T	c.(79-81)TAC>TAT	p.Y27Y	MAP1D_uc010zdw.1_5'UTR	NM_199227	NP_954697	Q6UB28	AMP1D_HUMAN	methionine aminopeptidase 1D precursor	27					N-terminal protein amino acid modification|peptidyl-methionine modification|proteolysis	mitochondrion	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			ATCATATCTACTTACACAAGC	0.363		NA											9	133					0	0	0	0
HOXD13	3239	broad.mit.edu	37	2	176958202	176958202	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:176958202G>A	uc002ukf.1	+	1	671	c.584G>A	c.(583-585)GGC>GAC	p.G195D		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	195					skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		TTCTACCAGGGCTATACGAGC	0.622		NA	T	NUP98	AML*								14	66					0	0	0	0
NFE2L2	4780	broad.mit.edu	37	2	178098960	178098960	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:178098960C>G	uc002ulh.3	-	2	640	c.85G>C	c.(85-87)GAT>CAT	p.D29H	NFE2L2_uc002ulg.3_Missense_Mutation_p.D13H|NFE2L2_uc010zfa.1_Missense_Mutation_p.D13H|NFE2L2_uc002uli.3_Missense_Mutation_p.D13H|NFE2L2_uc010fra.2_Missense_Mutation_p.D13H|NFE2L2_uc010frb.2_Missense_Mutation_p.D13H	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	29					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			ACTCCAAGATCTATATCTTGC	0.363		NA	Mis		NSCLC|HNSCC					HNSCC(56;0.16)			8	32					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196866401	196866401	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:196866401G>A	uc002utj.3	-	11	1272	c.1171C>T	c.(1171-1173)CCA>TCA	p.P391S		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	391	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATACTTACTGGGGGTTGTGCA	0.368		NA											15	41					0	0	0	0
CLK1	1195	broad.mit.edu	37	2	201722606	201722606	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:201722606G>A	uc002uwe.2	-	7	848	c.667C>T	c.(667-669)CGC>TGC	p.R223C	CLK1_uc002uwd.2_Missense_Mutation_p.R46C|CLK1_uc010zhi.1_Missense_Mutation_p.R265C|CLK1_uc002uwf.2_5'UTR|CLK1_uc002uwg.2_Missense_Mutation_p.R72C|CLK1_uc010fsv.2_RNA	NM_004071	NP_004062	P49759	CLK1_HUMAN	CDC-like kinase 1 isoform 1	223	Protein kinase.				cell proliferation	nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			pancreas(2)	2						TGGACACAGCGGCTACAAACA	0.353		NA											8	139					0	0	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447464	226447464	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:226447464G>T	uc002voe.2	+	4	1506	c.1331G>T	c.(1330-1332)AGG>ATG	p.R444M	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.R214M	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	444	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		AGCATGGGGAGGTCCCTGACT	0.637		NA											8	42					1.07e-07	1.2e-07	1	0
DIS3L2	129563	broad.mit.edu	37	2	233201320	233201320	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:233201320G>A	uc010fxz.2	+	21	2914	c.2638G>A	c.(2638-2640)GAG>AAG	p.E880K	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA|DIS3L2_uc002vsp.1_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	880							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		CGGTGAGCCCGAGGACTCAAG	0.557		NA											3	7					0	0	0	0
ING5	84289	broad.mit.edu	37	2	242650891	242650891	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:242650891C>T	uc002wcd.2	+	4	401	c.376C>T	c.(376-378)CGA>TGA	p.R126*	ING5_uc002wcc.1_Nonsense_Mutation_p.R126*	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	126					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		CTCCGGAGGGCGAGGGTTAAA	0.398		NA											17	46					0	0	0	0
FLRT3	23767	broad.mit.edu	37	20	14306666	14306666	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr20:14306666C>G	uc002wov.1	-	3	1954	c.1487G>C	c.(1486-1488)TGT>TCT	p.C496S	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.C496S	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	496	Extracellular (Potential).|Fibronectin type-III.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		AGTCTCAATACAAACAGGAGT	0.448		NA											10	77					0	0	0	0
DNMT3B	1789	broad.mit.edu	37	20	31374312	31374312	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr20:31374312G>A	uc002wyc.2	+	5	632	c.311G>A	c.(310-312)CGA>CAA	p.R104Q	DNMT3B_uc010ztx.1_Intron|DNMT3B_uc010zty.1_Intron|DNMT3B_uc002wyd.2_Missense_Mutation_p.R104Q|DNMT3B_uc002wye.2_Missense_Mutation_p.R104Q|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Intron|DNMT3B_uc010zua.1_Intron|DNMT3B_uc002wyf.2_Missense_Mutation_p.R116Q	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	104	Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						TTCTAGGTCCGAACTCGAAAT	0.627		NA											3	30					0	0	0	0
C20orf71	128861	broad.mit.edu	37	20	31811751	31811751	+	Missense_Mutation	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr20:31811751C>A	uc002wyr.2	+	2	470	c.262C>A	c.(262-264)CAG>AAG	p.Q88K	C20orf71_uc002wys.2_Missense_Mutation_p.Q88K	NM_178466	NP_848561	Q9BQP9	SPLC3_HUMAN	short long palate, lung and nasal epithelium	88	Poly-Gln.					extracellular region	lipid binding			ovary(1)|skin(1)	2						GAAACACCAGCAGCAGCAAGA	0.567		NA											20	33					1.26e-06	1.4e-06	1	0
RALGAPB	57148	broad.mit.edu	37	20	37150265	37150265	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr20:37150265G>C	uc002xiw.2	+	10	1800	c.1543G>C	c.(1543-1545)GAG>CAG	p.E515Q	RALGAPB_uc010zvz.1_Intron|RALGAPB_uc002xix.2_Missense_Mutation_p.E515Q|RALGAPB_uc002xiy.1_Missense_Mutation_p.E515Q|RALGAPB_uc002xiz.2_Missense_Mutation_p.E293Q|RALGAPB_uc002xja.1_Missense_Mutation_p.E242Q	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	515					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						AGGAAGAGCTGAGGCTTGTGG	0.413		NA											16	98					0	0	0	0
ZNF334	55713	broad.mit.edu	37	20	45130768	45130768	+	Missense_Mutation	SNP	G	G	A	rs141823361	byFrequency	TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr20:45130768G>A	uc002xsc.2	-	5	1394	c.1210C>T	c.(1210-1212)CCC>TCC	p.P404S	ZNF334_uc002xsa.2_Missense_Mutation_p.P427S|ZNF334_uc002xsb.2_Missense_Mutation_p.P366S|ZNF334_uc002xsd.2_Missense_Mutation_p.P366S|ZNF334_uc010ghl.2_Missense_Mutation_p.P403S	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	404					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				CATTCATAGGGTTTTTCCCCT	0.438		NA											28	128					0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60885489	60885489	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr20:60885489C>G	uc002ycq.2	-	76	10653	c.10586G>C	c.(10585-10587)GGA>GCA	p.G3529A		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3529	Laminin G-like 5.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGTGATAACTCCCCCGCTGCC	0.692		NA											4	36					0	0	0	0
TPTE	7179	broad.mit.edu	37	21	11012916	11012916	+	Splice_Site	SNP	C	C	A	rs4041777		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr21:11012916C>A	uc002yis.1	-	9		c.1704_splice	c.e9+1					P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCAAATTTTACCTAGCTTTTT	0.299		NA											4	15					0.00024832	0.000264664	1	0
IGSF5	150084	broad.mit.edu	37	21	41142937	41142937	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr21:41142937C>T	uc002yyo.2	+	4	616	c.513C>T	c.(511-513)CTC>CTT	p.L171L		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	171	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				GGACCCGGCTCCCGGATATTT	0.502		NA											21	32					0	0	0	0
C21orf33	8209	broad.mit.edu	37	21	45563136	45563136	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr21:45563136G>C	uc002zec.3	+	6	657	c.571G>C	c.(571-573)GAG>CAG	p.E191Q	C21orf33_uc002zed.3_Missense_Mutation_p.E160Q	NM_004649	NP_004640	P30042	ES1_HUMAN	es1 protein isoform Ia precursor	191						mitochondrion				ovary(1)	1				STAD - Stomach adenocarcinoma(101;0.168)|Colorectal(79;0.191)		CAGAGGCGTCGAGGTGACTGT	0.622		NA											11	17					0	0	0	0
KLHL22	84861	broad.mit.edu	37	22	20843396	20843396	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr22:20843396C>T	uc002zsl.1	-	2	212	c.103G>A	c.(103-105)GCT>ACT	p.A35T	KLHL22_uc011ahr.1_5'UTR|KLHL22_uc002zsm.1_Missense_Mutation_p.A35T	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	35					cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CGGAGCAGAGCCTGGGAGTGC	0.627		NA											13	41					0	0	0	0
PATZ1	23598	broad.mit.edu	37	22	31740836	31740836	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr22:31740836G>A	uc003akq.2	-	1	1414	c.753C>T	c.(751-753)TTC>TTT	p.F251F	PATZ1_uc003akp.2_Silent_p.F251F|PATZ1_uc003akr.2_Silent_p.F251F|PATZ1_uc003aks.2_Silent_p.F251F|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	251					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						CCACACTGGGGAATGGGGAAG	0.647		NA											3	26					0	0	0	0
CELSR1	9620	broad.mit.edu	37	22	46859643	46859643	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr22:46859643C>T	uc003bhw.1	-	2	4144	c.4144G>A	c.(4144-4146)GAG>AAG	p.E1382K		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1382	Extracellular (Potential).|EGF-like 2; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TAGCCGCCCTCGCGGCTGCGG	0.687		NA											3	3					0	0	0	0
TTLL3	26140	broad.mit.edu	37	3	9859377	9859377	+	Missense_Mutation	SNP	G	G	C	rs73116112	by1000genomes	TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:9859377G>C	uc003btg.2	+	5	580	c.364G>C	c.(364-366)GAT>CAT	p.D122H	ARPC4_uc003btc.1_Intron|TTLL3_uc003btd.3_Missense_Mutation_p.D122H|TTLL3_uc003btf.3_5'UTR|TTLL3_uc010hco.1_Missense_Mutation_p.D58H|TTLL3_uc003bth.3_5'UTR|TTLL3_uc011atj.1_Missense_Mutation_p.D58H|TTLL3_uc003btj.3_5'UTR|TTLL3_uc003bti.3_5'UTR	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	122					axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					TGATGAGGTTGATGCCAACTC	0.552		NA											6	117					0	0	0	0
EPHA6	285220	broad.mit.edu	37	3	96706569	96706569	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:96706569T>A	uc010how.1	+	3	889	c.846T>A	c.(844-846)TTT>TTA	p.F282L	EPHA6_uc003drp.1_Missense_Mutation_p.F282L	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	187	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						ATCTGGCTTTTCAAGACATTG	0.453		NA											32	324					0	0	0	0
NPHP3	27031	broad.mit.edu	37	3	132435688	132435688	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:132435688T>C	uc003epe.1	-	4	813	c.736A>G	c.(736-738)ATG>GTG	p.M246V	NPHP3_uc003epf.1_Missense_Mutation_p.M1V	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	246					maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						AGCTGGATCATGCTTCCTATG	0.458		NA											27	101					0	0	0	0
SLC9A9	285195	broad.mit.edu	37	3	143082405	143082405	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:143082405C>A	uc003evn.2	-	14	1707	c.1525G>T	c.(1525-1527)GAA>TAA	p.E509*		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	509					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						TTATTTGCTTCCTGGGGAGAA	0.318		NA											7	86					5.18e-06	5.67e-06	1	0
PLOD2	5352	broad.mit.edu	37	3	145809656	145809656	+	Silent	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:145809656G>T	uc003evs.1	-	8	1316	c.810C>A	c.(808-810)CCC>CCA	p.P270P	PLOD2_uc011bnm.1_Silent_p.P215P|PLOD2_uc003evr.1_Silent_p.P270P	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	270					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	TCCATGAATTGGGTACATAGT	0.373		NA											6	69					0.00116845	0.00123227	1	0
OTOL1	131149	broad.mit.edu	37	3	161221227	161221227	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:161221227G>A	uc011bpb.1	+	4	931	c.931G>A	c.(931-933)GGT>AGT	p.G311S		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	311	Collagen-like 3.					collagen					0						TGGGCCGAAGGGTGACATTGG	0.597		NA											17	19					0	0	0	0
SI	6476	broad.mit.edu	37	3	164773033	164773033	+	Silent	SNP	T	T	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:164773033T>G	uc003fei.2	-	13	1523	c.1461A>C	c.(1459-1461)GCA>GCC	p.A487A		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	487	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGCATTCATTTGCCCACCAAT	0.343		NA								HNSCC(35;0.089)			60	65					0	0	0	0
SI	6476	broad.mit.edu	37	3	164783161	164783161	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:164783161C>T	uc003fei.2	-	7	757	c.695G>A	c.(694-696)CGT>CAT	p.R232H		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	232	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACTTGGAAGACGGGTTGAGAT	0.353		NA								HNSCC(35;0.089)			8	55					0	0	0	0
SKIL	6498	broad.mit.edu	37	3	170099035	170099035	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:170099035G>C	uc003fgu.2	+	3	1814	c.1102G>C	c.(1102-1104)GAT>CAT	p.D368H	SKIL_uc011bps.1_Missense_Mutation_p.D348H|SKIL_uc003fgv.2_Missense_Mutation_p.D368H|SKIL_uc003fgw.2_Missense_Mutation_p.D368H	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	368					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TCTGCAGACAGATGCACCATC	0.289		NA											9	145					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178916836	178916836	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:178916836C>G	uc003fjk.2	+	2	380	c.223C>G	c.(223-225)CAA>GAA	p.Q75E		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	75	PI3K-ABD.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.Q75E(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AAGTGTTACTCAAGAAGCAGA	0.348		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			49	134					0	0	0	0
EPHB3	2049	broad.mit.edu	37	3	184295735	184295735	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:184295735C>T	uc003foz.2	+	8	2126	c.1689C>T	c.(1687-1689)TCC>TCT	p.S563S		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	563	Helical; (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			TCGTGGGCTCCGCTACAGCTG	0.642		NA											12	93					0	0	0	0
ETV5	2119	broad.mit.edu	37	3	185774946	185774946	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr3:185774946G>A	uc003fpz.2	-	11	1374	c.1127C>T	c.(1126-1128)ACC>ATC	p.T376I	ETV5_uc003fpy.2_Missense_Mutation_p.T418I	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	376	ETS.				cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			ATCAAGAAGGGTGACCAGGAA	0.552		NA	T	TMPRSS2|SCL45A3	Prostate 								22	73					0	0	0	0
CTBP1	1487	broad.mit.edu	37	4	1222118	1222119	+	Missense_Mutation	DNP	GC	GC	AA			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:1222118_1222119GC>AA	uc003gcv.1	-	3	373_374	c.208_209GC>TT	c.(208-210)GCT>TTT	p.A70F	CTBP1_uc003gct.1_Missense_Mutation_p.A51F|CTBP1_uc003gcu.1_Missense_Mutation_p.A59F	NM_001328	NP_001319	Q13363	CTBP1_HUMAN	C-terminal binding protein 1 isoform 1	70	Interaction with GLIS2 1 (By similarity).				interspecies interaction between organisms|negative regulation of cell proliferation|negative regulation of histone H4 acetylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone deacetylation|protein phosphorylation|regulation of cell cycle|regulation of transcription by chromatin organization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|viral genome replication|white fat cell differentiation	cytoplasm|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein C-terminus binding|protein domain specific binding|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00818)	Colorectal(103;0.2)		GGCCCCCACAGCCTCGTTCAGG	0.619		NA											7	54					0	0	0	0
ADD1	118	broad.mit.edu	37	4	2883674	2883674	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:2883674G>A	uc003gfr.2	+	3	433	c.245G>A	c.(244-246)GGG>GAG	p.G82E	ADD1_uc003gfn.2_Intron|ADD1_uc010ico.1_Missense_Mutation_p.G82E|ADD1_uc003gfo.2_Missense_Mutation_p.G82E|ADD1_uc003gfp.2_Missense_Mutation_p.G82E|ADD1_uc003gfq.2_Missense_Mutation_p.G82E|ADD1_uc003gfs.2_Missense_Mutation_p.G82E|ADD1_uc003gft.3_Missense_Mutation_p.G82E	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	82					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TTTAAGAAGGGGAAGAACCCC	0.408		NA											10	74					0	0	0	0
NKX3-2	579	broad.mit.edu	37	4	13545814	13545814	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:13545814G>A	uc003gmx.2	-	1	301	c.225C>T	c.(223-225)GCC>GCT	p.A75A		NM_001189	NP_001180	P78367	NKX32_HUMAN	NK3 homeobox 2	75					negative regulation of chondrocyte differentiation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTCTGGTACCGGCAGGAGACG	0.662		NA											5	5					0	0	0	0
HSD17B13	345275	broad.mit.edu	37	4	88243866	88243866	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:88243866C>G	uc003hqo.2	-	1	191	c.128G>C	c.(127-129)GGA>GCA	p.G43A	HSD17B13_uc010ikk.2_Missense_Mutation_p.G43A	NM_178135	NP_835236	Q7Z5P4	DHB13_HUMAN	hydroxysteroid (17-beta) dehydrogenase 13	43	NAD (By similarity).					extracellular region	binding|oxidoreductase activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.000308)		ATGCCCAGCTCCAGTAATGAG	0.423		NA											9	98					0	0	0	0
BANK1	55024	broad.mit.edu	37	4	102984276	102984276	+	Silent	SNP	A	A	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:102984276A>G	uc003hvy.3	+	13	2467	c.2193A>G	c.(2191-2193)CCA>CCG	p.P731P	BANK1_uc003hvx.3_Silent_p.P716P|BANK1_uc010ill.2_Silent_p.P598P|BANK1_uc003hvz.3_Silent_p.P701P	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	731					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		GGAAAAGGCCAGAAGAAGAAA	0.254		NA											6	34					0	0	0	0
GSTCD	79807	broad.mit.edu	37	4	106638773	106638773	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:106638773G>A	uc003hxz.3	+	2	75	c.3G>A	c.(1-3)ATG>ATA	p.M1I	GSTCD_uc003hxx.2_Missense_Mutation_p.M1I|GSTCD_uc003hxy.3_Missense_Mutation_p.M1I|GSTCD_uc011cfb.1_Intron|GSTCD_uc010ils.1_Missense_Mutation_p.M1I	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	1						cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		AGAAGAAAATGAAAGCCATAA	0.313		NA											7	34					0	0	0	0
SCLT1	132320	broad.mit.edu	37	4	129886441	129886441	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:129886441C>T	uc003igp.2	-	11	1316	c.810G>A	c.(808-810)GAG>GAA	p.E270E	SCLT1_uc003ign.2_Intron|SCLT1_uc003igo.2_5'UTR|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	270	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						CTGATGCTTCCTCTCTTCCAT	0.343		NA											9	29					0	0	0	0
SH3RF1	57630	broad.mit.edu	37	4	170028206	170028206	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr4:170028206C>T	uc003isa.1	-	11	2625	c.2290G>A	c.(2290-2292)GGA>AGA	p.G764R		NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	764						Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		TGGCCACCTCCTGGTGGCAGT	0.672		NA											9	21					0	0	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461296	5461296	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:5461296G>A	uc003jdm.3	+	13	2071	c.1849G>A	c.(1849-1851)GAT>AAT	p.D617N		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	617										ovary(1)|central_nervous_system(1)	2						TGACTCAGGTGATGGAATGGA	0.418		NA											25	49					0	0	0	0
PAPD7	11044	broad.mit.edu	37	5	6749698	6749698	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:6749698C>T	uc003jdx.1	+	9	994	c.865C>T	c.(865-867)CAG>TAG	p.Q289*	PAPD7_uc011cmn.1_Nonsense_Mutation_p.Q280*|PAPD7_uc010itl.1_Nonsense_Mutation_p.Q109*	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	289					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						CAAAGTAACTCAGGAGGTGAT	0.488		NA											20	138					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13737360	13737360	+	Splice_Site	SNP	C	C	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:13737360C>A	uc003jfd.2	-	66	11497	c.11455_splice	c.e66+1	p.V3819_splice	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5						microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACCAAACTCACCAGGTCTGTA	0.403		NA							Kartagener_syndrome				31	83					2.2e-25	2.59e-25	1	0
DNAH5	1767	broad.mit.edu	37	5	13850873	13850873	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:13850873G>A	uc003jfd.2	-	31	5044	c.5002C>T	c.(5002-5004)CGG>TGG	p.R1668W		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1668	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCATGTGCCCGAGTCATGATC	0.468		NA							Kartagener_syndrome				17	79					0	0	0	0
PRDM9	56979	broad.mit.edu	37	5	23526576	23526577	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:23526576_23526577CC>AA	uc003jgo.2	+	11	1561_1562	c.1379_1380CC>AA	c.(1378-1380)TCC>TAA	p.S460*		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	460					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AAAGAAAGGTCCAAACTCTTGA	0.465		NA								HNSCC(3;0.000094)			4	21					0	0	0	0
TTC23L	153657	broad.mit.edu	37	5	34863073	34863073	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:34863073G>A	uc003jiu.2	+	5	553	c.450G>A	c.(448-450)ACG>ACA	p.T150T	TTC23L_uc003jiv.2_5'Flank|TTC23L_uc010iut.1_5'Flank	NM_144725	NP_653326	Q6PF05	TT23L_HUMAN	tetratricopeptide repeat domain 23-like	150							binding			central_nervous_system(1)	1						AGGCAAATACGACCTCAAATA	0.512		NA											14	38					0	0	0	0
PRLR	5618	broad.mit.edu	37	5	35070259	35070259	+	Missense_Mutation	SNP	A	A	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:35070259A>C	uc003jjm.2	-	7	1182	c.652T>G	c.(652-654)TGG>GGG	p.W218G	PRLR_uc003jjg.1_Missense_Mutation_p.W218G|PRLR_uc003jjh.1_Missense_Mutation_p.W218G|PRLR_uc003jji.1_Missense_Mutation_p.W147G|PRLR_uc003jjj.1_Missense_Mutation_p.W218G|PRLR_uc003jjk.1_Missense_Mutation_p.W147G|PRLR_uc003jjl.3_Missense_Mutation_p.W117G|PRLR_uc010iuw.1_Missense_Mutation_p.W147G	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	218	Fibronectin type-III 2.|WSXWS motif.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCTGGACTCCATGCACTCCAG	0.433		NA											12	25					0	0	0	0
C5orf42	65250	broad.mit.edu	37	5	37157808	37157808	+	Missense_Mutation	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:37157808T>C	uc011cpa.1	-	40	8152	c.7921A>G	c.(7921-7923)ACT>GCT	p.T2641A	C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.T1159A|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.T1734A	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2641										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ACAGCATTAGTAACTGAAGCT	0.328		NA											25	41					0	0	0	0
WDR70	55100	broad.mit.edu	37	5	37379491	37379491	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:37379491G>A	uc003jkv.2	+	1	80	c.22G>A	c.(22-24)GAA>AAA	p.E8K	WDR70_uc010iva.1_Missense_Mutation_p.E8K	NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	8										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGGGCCCAGCGAAGGTGGGTT	0.642		NA											49	123					0	0	0	0
CARD6	84674	broad.mit.edu	37	5	40854255	40854255	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:40854255C>G	uc003jmg.2	+	3	2896	c.2821C>G	c.(2821-2823)CAG>GAG	p.Q941E		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	941					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CAAGAGCTCTCAGTTCAAATC	0.493		NA											23	145					0	0	0	0
VCAN	1462	broad.mit.edu	37	5	82832967	82832967	+	Missense_Mutation	SNP	A	A	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:82832967A>T	uc003kii.3	+	8	4501	c.4145A>T	c.(4144-4146)GAC>GTC	p.D1382V	VCAN_uc003kij.3_Missense_Mutation_p.D395V|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.D46V	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1382	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ATTGAAATAGACCTATACCAC	0.343		NA											7	25					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	89924449	89924449	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:89924449C>G	uc003kju.2	+	8	1405	c.1309C>G	c.(1309-1311)CGG>GGG	p.R437G	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	437	Extracellular (Potential).			LTR -> VTP (in Ref. 2; AAL30811).	cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGTGTTGACACGGAACAGCAC	0.423		NA											22	24					0	0	0	0
SRP19	6728	broad.mit.edu	37	5	112227799	112227799	+	Missense_Mutation	SNP	A	A	G	rs712665	by1000genomes	TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:112227799A>G	uc011cvv.1	+	4	793	c.538A>G	c.(538-540)AGT>GGT	p.S180G	SRP19_uc011cvu.1_Missense_Mutation_p.S165G|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_Intron|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:Variant_position_missing_in_P09132_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		TTTAGAAAATAGTACCACATG	0.328		NA											4	34					0	0	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250371	140250371	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:140250371G>A	uc003lia.2	+	1	2541	c.1683G>A	c.(1681-1683)GCG>GCA	p.A561A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.A561A	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	561	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGACAACGCGCCGGCACTGC	0.682		NA											21	95					0	0	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590194	140590194	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:140590194G>T	uc003liz.2	+	1	1904	c.1715G>T	c.(1714-1716)TGC>TTC	p.C572F	PCDHB12_uc011dak.1_Missense_Mutation_p.C235F	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	572	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCGCGCCCTGCACCGAGCTG	0.701		NA											32	46					1.7e-12	1.94e-12	1	0
CLINT1	9685	broad.mit.edu	37	5	157240172	157240172	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr5:157240172G>A	uc003lxj.1	-	5	606	c.416C>T	c.(415-417)GCC>GTC	p.A139V	CLINT1_uc003lxi.1_Missense_Mutation_p.A121V|CLINT1_uc011ddv.1_Missense_Mutation_p.A139V	NM_014666	NP_055481	Q14677	EPN4_HUMAN	epsin 4	139	ENTH.				endocytosis|post-Golgi vesicle-mediated transport	clathrin-coated vesicle|cytosol|Golgi apparatus|membrane|perinuclear region of cytoplasm	clathrin binding|lipid binding			ovary(2)|pancreas(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTCATCCTGGGCAAATTCAAC	0.413		NA											13	45					0	0	0	0
HIVEP1	3096	broad.mit.edu	37	6	12122522	12122522	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:12122522G>A	uc003nac.2	+	4	2673	c.2494G>A	c.(2494-2496)GAC>AAC	p.D832N	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	832					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ACCTTCACTTGACTGTTTACC	0.428		NA											7	127					0	0	0	0
OR2W1	26692	broad.mit.edu	37	6	29012395	29012395	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:29012395C>T	uc003nlw.2	-	1	558	c.558G>A	c.(556-558)AAG>AAA	p.K186K		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CACAAGCTATCTTGACCAGAG	0.403		NA											8	96					0	0	0	0
CYP21A2	1589	broad.mit.edu	37	6	31975129	31975129	+	Silent	SNP	T	T	C	rs113153064		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:31975129T>C	uc010jtp.2	+	8	940	c.822T>C	c.(820-822)TCT>TCC	p.S274S	CYP21A2_uc011dpb.1_Silent_p.S244S			P08686	CP21A_HUMAN	SubName: Full=Cytochrome P450, family 21, subfamily A, polypeptide 2; SubName: Full=Cytochrome P450 21-hydroxylase; SubName: Full=Cytochrome P450, family 21, subfamily A, polypeptide 2, isoform CRA_b; SubName: Full=DJ34F7.3 (Cytochrome P450, subfamily XXIA (Steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2 (CYP21, P450c21B)); SubName: Full=cDNA, FLJ95495, Homo sapiens cytochrome P450, family 21, subfamily A, polypeptide 2(CYP21A2), mRNA;	273					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						AAGAGGGCTCTGGACAGCTCC	0.607		NA											8	97					0	0	0	0
DEFB112	245915	broad.mit.edu	37	6	50011492	50011492	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:50011492G>A	uc011dws.1	-	2	138	c.138C>T	c.(136-138)ATC>ATT	p.I46I		NM_001037498	NP_001032587	Q30KQ8	DB112_HUMAN	beta-defensin 112 precursor	46					defense response to bacterium	extracellular region				central_nervous_system(1)	1	Lung NSC(77;0.042)					TACTAAAGGTGATATGGTGCC	0.403		NA											8	51					0	0	0	0
PHF3	23469	broad.mit.edu	37	6	64394278	64394278	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:64394278C>T	uc003pep.1	+	3	681	c.655C>T	c.(655-657)CAT>TAT	p.H219Y	PHF3_uc010kaf.1_Missense_Mutation_p.H219Y|PHF3_uc003pem.2_Missense_Mutation_p.H172Y|PHF3_uc010kag.1_Missense_Mutation_p.H131Y|PHF3_uc010kah.1_Missense_Mutation_p.H33Y|PHF3_uc003pen.2_Missense_Mutation_p.H131Y|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.H219Y	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	219					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			GTCTTCAAGTCATTCTTCAGT	0.393		NA											23	89					0	0	0	0
MDN1	23195	broad.mit.edu	37	6	90459426	90459426	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:90459426C>T	uc003pnn.1	-	25	3567	c.3451G>A	c.(3451-3453)GAT>AAT	p.D1151N		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	1151					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TTTAATTCATCTAAAATAATC	0.353		NA											22	42					0	0	0	0
RFPL4B	442247	broad.mit.edu	37	6	112671570	112671570	+	Silent	SNP	T	T	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:112671570T>C	uc003pvx.1	+	3	972	c.660T>C	c.(658-660)TTT>TTC	p.F220F		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	220	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		AAATCCAGTTTTTTGATGTTG	0.458		NA											12	55					0	0	0	0
PDE10A	10846	broad.mit.edu	37	6	165848793	165848793	+	Missense_Mutation	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr6:165848793G>T	uc003qun.2	-	7	680	c.439C>A	c.(439-441)CAG>AAG	p.Q147K	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.Q77K|PDE10A_uc003quo.2_Missense_Mutation_p.Q157K	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	147	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GTGGTGCCCTGAGTGATGGGC	0.483		NA											12	23					2.81e-09	3.18e-09	1	0
CCT6A	908	broad.mit.edu	37	7	56130445	56130445	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:56130445C>G	uc003trl.1	+	13	1684	c.1520C>G	c.(1519-1521)TCC>TGC	p.S507C	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Missense_Mutation_p.S462C|CCT6A_uc011kcu.1_Missense_Mutation_p.S476C|SUMF2_uc003tro.2_5'Flank|SUMF2_uc011kcv.1_5'Flank|SUMF2_uc011kcw.1_5'Flank|SUMF2_uc011kcx.1_5'Flank|SUMF2_uc003trv.2_5'Flank|SUMF2_uc003trt.2_5'Flank|SUMF2_uc011kcy.1_5'Flank|SUMF2_uc011kcz.1_5'Flank|SUMF2_uc003tru.2_5'Flank|SUMF2_uc011kda.1_5'Flank|SUMF2_uc003trx.2_5'Flank	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	507					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTTCTTCACTCCTGGTAAGTT	0.378		NA											22	40					0	0	0	0
TAF6	6878	broad.mit.edu	37	7	99711749	99711749	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:99711749G>A	uc003uti.2	-	2	165	c.84C>T	c.(82-84)ATC>ATT	p.I28I	TAF6_uc003utg.2_5'Flank|TAF6_uc003uth.2_Silent_p.I85I|TAF6_uc003utk.2_Silent_p.I28I|TAF6_uc011kji.1_Silent_p.I65I|TAF6_uc003utj.2_Silent_p.I28I|TAF6_uc003utl.2_Silent_p.I28I|TAF6_uc003utm.2_Silent_p.I28I|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	28					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAATCTGGGCGATGCCCATGG	0.567		NA											21	111					0	0	0	0
CUX1	1523	broad.mit.edu	37	7	101840399	101840399	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:101840399G>A	uc003uyx.3	+	15	1746	c.1708G>A	c.(1708-1710)GGA>AGA	p.G570R	CUX1_uc003uys.3_Missense_Mutation_p.G581R|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	570	CUT 1.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GCACAATATCGGACAACGTAT	0.542		NA											58	100					0	0	0	0
GRM8	2918	broad.mit.edu	37	7	126173489	126173489	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:126173489G>A	uc003vlr.2	-	8	2258	c.1947C>T	c.(1945-1947)TCC>TCT	p.S649S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.S649S|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	649	Helical; Name=3; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CCCGTCGGAAGGAGCATATGA	0.448		NA								HNSCC(24;0.065)			6	68					0	0	0	0
LRGUK	136332	broad.mit.edu	37	7	133948645	133948645	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:133948645G>A	uc003vrm.1	+	20	2412	c.2396G>A	c.(2395-2397)AGA>AAA	p.R799K		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	799							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CACCAACACAGACAACACTCG	0.458		NA											10	56					0	0	0	0
ZNF282	8427	broad.mit.edu	37	7	148895756	148895756	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:148895756G>A	uc003wfm.2	+	2	602	c.497G>A	c.(496-498)AGG>AAG	p.R166K	ZNF282_uc011kun.1_Missense_Mutation_p.R166K|ZNF282_uc003wfn.2_Missense_Mutation_p.R106K|ZNF282_uc003wfo.2_Missense_Mutation_p.R106K	NM_003575	NP_003566	Q9UDV7	ZN282_HUMAN	zinc finger protein 282	166					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)	Lung(243;0.145)		CTGCTGCAGAGGCGGCTGGAG	0.637		NA											15	60					0	0	0	0
SLC4A2	6522	broad.mit.edu	37	7	150771922	150771922	+	Missense_Mutation	SNP	T	T	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:150771922T>A	uc003wit.3	+	19	3297	c.3041T>A	c.(3040-3042)ATC>AAC	p.I1014N	SLC4A2_uc011kve.1_Missense_Mutation_p.I1005N|SLC4A2_uc003wiu.3_Missense_Mutation_p.I1000N|SLC4A2_uc003wiv.3_Missense_Mutation_p.I208N|uc011kvf.1_3'UTR	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	1014	Membrane (anion exchange).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGACACAGATCACCACGTGA	0.602		NA											7	10					0	0	0	0
AGAP3	116988	broad.mit.edu	37	7	150817161	150817161	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr7:150817161G>A	uc003wjg.1	+	8	1060	c.1057G>A	c.(1057-1059)GAG>AAG	p.E353K	AGAP3_uc003wje.1_Missense_Mutation_p.E125K|AGAP3_uc003wjf.1_Missense_Mutation_p.E353K|AGAP3_uc010lpy.1_Intron|AGAP3_uc003wjh.1_Missense_Mutation_p.E533K|AGAP3_uc003wji.1_5'Flank	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	317	Small GTPase-like.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GCTGCGCATCGAGACCATCGC	0.652		NA											26	21					0	0	0	0
FBXO25	26260	broad.mit.edu	37	8	381402	381402	+	Nonsense_Mutation	SNP	A	A	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:381402A>T	uc003wox.2	+	3	462	c.196A>T	c.(196-198)AAA>TAA	p.K66*	FBXO25_uc003woy.2_Nonsense_Mutation_p.K66*|FBXO25_uc003woz.2_Missense_Mutation_p.K15N	NM_183421	NP_904357	Q8TCJ0	FBX25_HUMAN	F-box only protein 25 isoform 1	66	Interaction with beta-actin.					nucleus|SCF ubiquitin ligase complex	actin binding|ubiquitin-protein ligase activity			lung(1)	1		Ovarian(12;0.00965)|Colorectal(14;0.0815)|Myeloproliferative disorder(644;0.116)|all_neural(12;0.122)		Epithelial(5;3.14e-14)|OV - Ovarian serous cystadenocarcinoma(5;1.56e-07)|BRCA - Breast invasive adenocarcinoma(11;1.88e-06)		TGCATCGAAAAAAAGGAAAAA	0.249		NA											8	40					0	0	0	0
LOXL2	4017	broad.mit.edu	37	8	23179757	23179757	+	Silent	SNP	T	T	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:23179757T>G	uc003xdh.1	-	7	1527	c.1188A>C	c.(1186-1188)ACA>ACC	p.T396T	LOXL2_uc010lty.1_5'Flank	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	396	SRCR 3.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		TCTCATTGCCTGTGCACTGGA	0.517		NA											25	33					0	0	0	0
ANK1	286	broad.mit.edu	37	8	41543691	41543691	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:41543691G>A	uc003xok.2	-	36	4453	c.4369C>T	c.(4369-4371)CGT>TGT	p.R1457C	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.R773C|ANK1_uc003xoi.2_Missense_Mutation_p.R1457C|ANK1_uc003xoj.2_Missense_Mutation_p.R1457C|ANK1_uc003xol.2_Missense_Mutation_p.R1457C|ANK1_uc003xom.2_Missense_Mutation_p.R1498C	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1457	55 kDa regulatory domain.|Death.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton	p.R1457H(1)		ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGGCCTTCACGGATGACCCAG	0.522		NA											7	54					0	0	0	0
CYP7A1	1581	broad.mit.edu	37	8	59407110	59407110	+	Missense_Mutation	SNP	G	G	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:59407110G>C	uc003xtm.3	-	4	1057	c.994C>G	c.(994-996)CCT>GCT	p.P332A		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	332					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				AAACAAATAGGATTGCCTTCC	0.373		NA							Neonatal_Giant_Cell_Hepatitis				18	47					0	0	0	0
PREX2	80243	broad.mit.edu	37	8	68934362	68934362	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:68934362G>A	uc003xxv.1	+	4	455	c.428G>A	c.(427-429)CGG>CAG	p.R143Q	PREX2_uc003xxu.1_Missense_Mutation_p.R143Q|PREX2_uc011lez.1_Missense_Mutation_p.R78Q	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	143	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGAACAATCCGGACATTTCTT	0.328		NA											23	25					0	0	0	0
NCOA2	10499	broad.mit.edu	37	8	71069394	71069394	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:71069394G>A	uc003xyn.1	-	11	1368	c.1206C>T	c.(1204-1206)AGC>AGT	p.S402S		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	402					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			GATGGGCAGGGCTGTTAGAGC	0.478		NA	T	RUNXBP2	AML								6	27					0	0	0	0
SLC30A8	169026	broad.mit.edu	37	8	118175721	118175721	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:118175721G>A	uc003yoh.2	+	6	1011	c.781G>A	c.(781-783)GCC>ACC	p.A261T	SLC30A8_uc010mcz.2_Missense_Mutation_p.A212T|SLC30A8_uc011lia.1_Missense_Mutation_p.A212T|SLC30A8_uc003yog.2_Missense_Mutation_p.A212T	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	261	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CCTGGTCTTGGCCAGCACCAT	0.398		NA											9	103					0	0	0	0
COL14A1	7373	broad.mit.edu	37	8	121170405	121170405	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:121170405C>G	uc003yox.2	+	3	390	c.125C>G	c.(124-126)TCT>TGT	p.S42C		NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	42	Fibronectin type-III 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AATGTAATATCTCATGACAGT	0.343		NA											15	34					0	0	0	0
KCNQ3	3786	broad.mit.edu	37	8	133192492	133192492	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:133192492C>T	uc003ytj.2	-	4	914	c.689G>A	c.(688-690)CGC>CAC	p.R230H	KCNQ3_uc010mdt.2_Missense_Mutation_p.R230H	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	230	Helical; Voltage-sensor; Name=Segment S4; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CTGCAGGAAGCGCAGGCTTCG	0.587		NA											7	62					0	0	0	0
COL22A1	169044	broad.mit.edu	37	8	139696689	139696689	+	Silent	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr8:139696689G>A	uc003yvd.2	-	39	3438	c.2991C>T	c.(2989-2991)CTC>CTT	p.L997L	COL22A1_uc011ljo.1_Silent_p.L297L	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	997	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGGGTCCAGGGAGTCCAGGTG	0.493		NA								HNSCC(7;0.00092)			16	129					0	0	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971186	21971186	+	Nonsense_Mutation	SNP	G	G	A	rs121913387		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:21971186G>A	uc003zpk.2	-	2	384	c.172C>T	c.(172-174)CGA>TGA	p.R58*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.P113L	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	58	ANK 2.				cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.R58*(68)|p.?(14)|p.M53_R58del(3)|p.R58fs*59(2)|p.M54fs*61(2)|p.R58fs*89(1)|p.R58R(1)|p.V28_V51del(1)|p.A57_R58>V*(1)|p.R58fs*61(1)|p.R58fs*62(1)|p.G55fs*86(1)|p.R58Q(1)|p.P113L(1)|p.A57fs*85(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TCCGCCACTCGGGCGCTGCCC	0.677		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			9	4					0	0	0	0
TAF1L	138474	broad.mit.edu	37	9	32630185	32630185	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:32630185G>A	uc003zrg.1	-	1	5483	c.5393C>T	c.(5392-5394)TCT>TTT	p.S1798F		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1798					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TCCCACATCAGAGTCACTTCC	0.453		NA											12	49					0	0	0	0
FBXO10	26267	broad.mit.edu	37	9	37537796	37537796	+	Missense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:37537796C>G	uc004aab.2	-	3	779	c.730G>C	c.(730-732)GAA>CAA	p.E244Q	FBXO10_uc004aac.2_Missense_Mutation_p.E260Q|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	244	PbH1 2.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		TCACAGTTTTCCAGGACACAC	0.498		NA											5	32					0	0	0	0
WNK2	65268	broad.mit.edu	37	9	96021855	96021855	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:96021855C>T	uc004ati.1	+	11	3025	c.3025C>T	c.(3025-3027)CTT>TTT	p.L1009F	WNK2_uc011lud.1_Missense_Mutation_p.L1009F|WNK2_uc004atj.2_Missense_Mutation_p.L1009F|WNK2_uc004atk.2_Missense_Mutation_p.L646F|WNK2_uc010mrc.1_Missense_Mutation_p.L957F	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	1009					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CCAGCCCCACCTTCCTGAACA	0.687		NA											3	8					0	0	0	0
PTCH1	5727	broad.mit.edu	37	9	98242784	98242784	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:98242784C>T	uc004avk.3	-	6	1021	c.833G>A	c.(832-834)TGG>TAG	p.W278*	PTCH1_uc010mro.2_Nonsense_Mutation_p.W127*|PTCH1_uc010mrp.2_Nonsense_Mutation_p.W127*|PTCH1_uc010mrq.2_Nonsense_Mutation_p.W127*|PTCH1_uc004avl.3_Nonsense_Mutation_p.W127*|PTCH1_uc010mrr.2_Nonsense_Mutation_p.W212*|PTCH1_uc004avm.3_Nonsense_Mutation_p.W277*|PTCH1_uc010mrs.1_5'UTR|PTCH1_uc010mrt.1_RNA|PTCH1_uc010mru.1_RNA	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	278	Extracellular (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity	p.W278*(2)		skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CATTTCCTCCCAGCTGTCCAC	0.498		NA							Basal_Cell_Nevus_syndrome				51	42					0	0	0	0
STX17	55014	broad.mit.edu	37	9	102677620	102677620	+	Missense_Mutation	SNP	A	A	C			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:102677620A>C	uc004bal.3	+	2	235	c.99A>C	c.(97-99)AGA>AGC	p.R33S	STX17_uc004bak.2_Missense_Mutation_p.R33S|STX17_uc010msx.2_RNA|STX17_uc011lvd.1_RNA	NM_017919	NP_060389	P56962	STX17_HUMAN	syntaxin 17	33	Cytoplasmic (Potential).				intracellular protein transport|vesicle-mediated transport	endoplasmic reticulum|integral to membrane|nucleolus	SNAP receptor activity			large_intestine(1)	1		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				AAAGGTTAAGAAAGCACCAGA	0.343		NA											16	34					0	0	0	0
SLC44A1	23446	broad.mit.edu	37	9	108110642	108110642	+	Nonsense_Mutation	SNP	C	C	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:108110642C>G	uc004bcn.2	+	5	631	c.410C>G	c.(409-411)TCA>TGA	p.S137*	SLC44A1_uc010mtk.1_Nonsense_Mutation_p.S137*	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	137	Mitochondrial intermembrane (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	TCAACAGGTTCAGCCCTATGT	0.353		NA											6	53					0	0	0	0
ZFP37	7539	broad.mit.edu	37	9	115818900	115818900	+	Missense_Mutation	SNP	T	T	G	rs144129779		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:115818900T>G	uc004bgm.1	-	1	97	c.69A>C	c.(67-69)GAA>GAC	p.E23D	ZFP37_uc011lwz.1_Missense_Mutation_p.E23D|ZFP37_uc011lxa.1_Missense_Mutation_p.E23D	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	23						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CTTTGGTCGTTTCCGCACTTC	0.652		NA											18	116					0	0	0	0
COL27A1	85301	broad.mit.edu	37	9	116930469	116930469	+	Missense_Mutation	SNP	G	G	A			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:116930469G>A	uc011lxl.1	+	3	634	c.634G>A	c.(634-636)GCT>ACT	p.A212T	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.A62T	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	212	Laminin G-like.|TSP N-terminal.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GTTTGAAGGTGCTCTCTGCCA	0.582		NA											6	58					0	0	0	0
CEP110	11064	broad.mit.edu	37	9	123914854	123914854	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:123914854C>T	uc004bkx.1	+	24	4086	c.4055C>T	c.(4054-4056)TCG>TTG	p.S1352L	CEP110_uc004bla.1_Missense_Mutation_p.S800L|CEP110_uc010mvo.1_Missense_Mutation_p.S21L|CEP110_uc004blb.1_Missense_Mutation_p.S21L	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1352	Potential.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						AAGCGGCAGTCGGAGAAAGAA	0.383		NA											25	36					0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139405241	139405241	+	Silent	SNP	G	G	A	rs115235667	by1000genomes	TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:139405241G>A	uc004chz.2	-	17	2604	c.2604C>T	c.(2602-2604)GTC>GTT	p.V868V	NOTCH1_uc004cia.1_Silent_p.V98V	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	868	Extracellular (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CGTTGATGTCGACCTCACAGG	0.706		NA	T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			24	12					0	0	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766113	27766113	+	Silent	SNP	G	G	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chrX:27766113G>T	uc011mjy.1	+	1	1188	c.1101G>T	c.(1099-1101)GTG>GTT	p.V367V		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						ATAAGAAAGTGGGACTGTATA	0.418		NA											10	14					2.18e-05	2.37e-05	1	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973400	29973400	+	Missense_Mutation	SNP	T	T	G			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chrX:29973400T>G	uc004dby.2	+	11	2062	c.1554T>G	c.(1552-1554)ATT>ATG	p.I518M		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	518	Cytoplasmic (Potential).|TIR.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TGAGAGGAATTATGAACTACC	0.448		NA											27	9					0	0	0	0
DMD	1756	broad.mit.edu	37	X	32305682	32305682	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chrX:32305682C>T	uc004dda.1	-	43	6498	c.6254G>A	c.(6253-6255)TGG>TAG	p.W2085*	DMD_uc004dcw.2_Nonsense_Mutation_p.W741*|DMD_uc004dcx.2_Nonsense_Mutation_p.W744*|DMD_uc004dcz.2_Nonsense_Mutation_p.W1962*|DMD_uc004dcy.1_Nonsense_Mutation_p.W2081*|DMD_uc004ddb.1_Nonsense_Mutation_p.W2077*|DMD_uc010ngo.1_Intron|DMD_uc010ngn.1_RNA	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2085	Spectrin 14.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AACTTTTTCCCATTGGAAATC	0.398		NA											28	19					0	0	0	0
UPRT	139596	broad.mit.edu	37	X	74494189	74494189	+	Silent	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chrX:74494189C>T	uc004ecb.1	+	1	229	c.100C>T	c.(100-102)CTG>TTG	p.L34L	UPRT_uc010nlu.1_Silent_p.L34L|UPRT_uc004ecc.1_RNA|UPRT_uc004ecd.1_Silent_p.L34L|UPRT_uc004ece.1_5'Flank	NM_145052	NP_659489	Q96BW1	UPP_HUMAN	uracil phosphoribosyltransferase (FUR1) homolog	34					nucleoside metabolic process	cytoplasm|nucleus					0						ACCTGGCGATCTGATCCTGGA	0.612		NA											4	16					0	0	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994922	140994922	+	Missense_Mutation	SNP	C	C	T			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chrX:140994922C>T	uc004fbt.2	+	4	2018	c.1732C>T	c.(1732-1734)CAC>TAC	p.H578Y	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	578							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTGTCTCCTCACTACTTTCC	0.582		NA								HNSCC(15;0.026)			118	109					0	0	0	0
CXorf40A	91966	broad.mit.edu	37	X	148627337	148627337	+	Missense_Mutation	SNP	G	G	A	rs149793182	byFrequency	TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chrX:148627337G>A	uc004fdb.2	+	4	433	c.161G>A	c.(160-162)CGG>CAG	p.R54Q	CXorf40A_uc011mxm.1_Missense_Mutation_p.R54Q|CXorf40A_uc011mxn.1_Missense_Mutation_p.R54Q|CXorf40A_uc004fdd.2_Missense_Mutation_p.R54Q|CXorf40A_uc004fde.1_Missense_Mutation_p.R54Q|CXorf40A_uc011mxo.1_Silent_p.A143A|CXorf40A_uc004fdg.2_Missense_Mutation_p.R54Q|CXorf40A_uc004fdf.2_Missense_Mutation_p.R54Q|CXorf40A_uc004fdh.2_Missense_Mutation_p.R54Q|CXorf40A_uc010nsy.2_Missense_Mutation_p.R54Q|CXorf40A_uc004fdi.2_Missense_Mutation_p.R71Q	NM_178124	NP_835225	Q8TE69	CX04A_HUMAN	chromosome X open reading frame 40	54							protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GATGCCTGGCGGGAGCTGCTG	0.592		NA											12	17					0	0	0	0
G6PD	2539	broad.mit.edu	37	X	153760877	153760877	+	Missense_Mutation	SNP	C	C	T	rs137852325		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chrX:153760877C>T	uc004fly.1	-	10	1305	c.1192G>A	c.(1192-1194)GAG>AAG	p.E398K	G6PD_uc004flx.1_Missense_Mutation_p.E428K	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	398			E -> K (in Puerto Limon; class I).		cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity			ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TACACGGCCTCGTTGGGCTGC	0.607		NA											15	37					0	0	0	0
LRP8	7804	broad.mit.edu	37	1	53746315	53746316	+	Frame_Shift_Ins	INS	-	-	A	rs146690956		TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr1:53746315_53746316insA	uc001cvi.1	-	4	581_582	c.439_440insT	c.(439-441)CGCfs	p.R147fs	LRP8_uc001cvh.1_5'UTR|LRP8_uc001cvk.1_Frame_Shift_Ins_p.R147fs|LRP8_uc001cvj.1_Frame_Shift_Ins_p.R147fs|LRP8_uc001cvl.1_Frame_Shift_Ins_p.R147fs	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	147	LDL-receptor class A 3.|Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity				0						CCCGTCGCAGCGCCACGAGGCA	0.614		NA											10	29	---	---	---	---	NA	NA	NA	NA
ZNF804A	91752	broad.mit.edu	37	2	185801912	185801912	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr2:185801912delA	uc002uph.2	+	4	2383	c.1789delA	c.(1789-1791)AAAfs	p.K597fs		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	597						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TAGAAGAAAGAAAAAAAGAAA	0.323		NA											14	72	---	---	---	---	NA	NA	NA	NA
TTF1	7270	broad.mit.edu	37	9	135251352	135251363	+	In_Frame_Del	DEL	GAGCCATGCATG	GAGCCATGCATG	-			TCGA-CV-7424-01A-11D-2078-08	TCGA-CV-7424-10A-01D-2078-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	76d5fc22-fd06-43f6-94a8-943a09db5fd6	9e9c86a0-0085-45e5-87e2-5c729901b55c	g.chr9:135251352_135251363delGAGCCATGCATG	uc004cbl.2	-	11	2709_2720	c.2657_2668delCATGCATGGCTC	c.(2656-2670)CCATGCATGGCTCAC>CAC	p.PCMA886del	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_In_Frame_Del_p.PCMA371del	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	886_889					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		ttacaggcgtgagccatgcatggcgcctggcc	0.175		NA											8	7	---	---	---	---	NA	NA	NA	NA
