Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	866467	866467	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:866467C>T	uc001abw.1	+	4	383	c.303C>T	c.(301-303)TGC>TGT	p.C101C	SAMD11_uc001abv.1_Silent_p.C101C	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	101						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		AGGCGTCCTGCAGGTAGGAGC	0.637		NA											21	31					0	0	0	0
MIIP	60672	broad.mit.edu	37	1	12081875	12081875	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:12081875C>T	uc001ato.1	+	2	272	c.92C>T	c.(91-93)TCA>TTA	p.S31L		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	31										ovary(1)	1						GTGCGGCGGTCAGTGGCCAGG	0.612		NA											5	27					0	0	0	0
USP48	84196	broad.mit.edu	37	1	22030033	22030033	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:22030033T>A	uc001bfb.2	-	21	2832	c.2594A>T	c.(2593-2595)TAT>TTT	p.Y865F	USP48_uc001bfa.2_Missense_Mutation_p.Y403F|USP48_uc010odq.1_Missense_Mutation_p.Y877F|USP48_uc009vqc.2_Missense_Mutation_p.Y799F|USP48_uc001bfc.2_Missense_Mutation_p.Y865F|USP48_uc001bfd.1_Intron	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	865					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		TTTATGGACATAGATGGTGGC	0.428		NA											65	126					0	0	0	0
USP1	7398	broad.mit.edu	37	1	62907261	62907261	+	Silent	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:62907261T>C	uc001daj.1	+	3	601	c.273T>C	c.(271-273)TAT>TAC	p.Y91Y	USP1_uc001dak.1_Silent_p.Y91Y|USP1_uc001dal.1_Silent_p.Y91Y	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	91					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		ATACTTGCTATCTTAATAGTA	0.343		NA											31	36					0	0	0	0
RWDD3	25950	broad.mit.edu	37	1	95710106	95710106	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:95710106C>G	uc009wdu.2	+	2	501	c.425C>G	c.(424-426)ACT>AGT	p.T142S	RWDD3_uc001drd.3_3'UTR|RWDD3_uc010oty.1_Missense_Mutation_p.T127S|RWDD3_uc009wdt.2_Missense_Mutation_p.T142S|RWDD3_uc001drf.3_Missense_Mutation_p.T142S|RWDD3_uc001drh.3_Missense_Mutation_p.T127S|RWDD3_uc009wdv.2_Intron|RWDD3_uc001drg.3_RNA|RWDD3_uc001dri.3_Missense_Mutation_p.T142S	NM_015485	NP_056300	Q9Y3V2	RWDD3_HUMAN	RWD domain containing 3 isoform a	142						cytoplasm|nucleus	protein binding			ovary(1)	1		all_epithelial(167;5.99e-05)|all_lung(203;0.00168)|Lung NSC(277;0.00769)		all cancers(265;0.112)|Epithelial(280;0.229)		TTGTGGATAACTCTTTTGCAT	0.418		NA											12	59					0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103345461	103345461	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:103345461T>A	uc001dul.2	-	66	5370	c.5052A>T	c.(5050-5052)TTA>TTT	p.L1684F	COL11A1_uc001duk.2_Missense_Mutation_p.L880F|COL11A1_uc001dum.2_Missense_Mutation_p.L1696F|COL11A1_uc001dun.2_Missense_Mutation_p.L1645F|COL11A1_uc009weh.2_Missense_Mutation_p.L1568F	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1684	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CTTCAACATCTAAGTATGAAA	0.378		NA											11	23					0	0	0	0
PTGFRN	5738	broad.mit.edu	37	1	117484584	117484584	+	Silent	SNP	C	C	T	rs149801733		TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:117484584C>T	uc001egv.1	+	2	434	c.297C>T	c.(295-297)AAC>AAT	p.N99N		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	99	Extracellular (Potential).|Ig-like C2-type 1.					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GGACTGCCAACGACGCCGTGG	0.587		NA											5	27					0	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144619881	144619881	+	Splice_Site	SNP	A	A	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:144619881A>C	uc009wig.1	+	8	643	c.567_splice	c.e8-2	p.R189_splice	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Splice_Site_p.R189_splice|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Splice_Site_p.R120_splice|NBPF9_uc001eli.3_Splice_Site|NBPF9_uc010oyf.1_Splice_Site_p.R120_splice|NBPF9_uc010oyg.1_Splice_Site_p.R154_splice|NBPF9_uc009wii.1_Splice_Site	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818							cytoplasm					0						CTGGCTCATCAGGGAGGTGCA	0.522		NA											19	801					0	0	0	0
BCL9	607	broad.mit.edu	37	1	147096739	147096739	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:147096739C>T	uc001epq.2	+	10	5000	c.4260C>T	c.(4258-4260)AAC>AAT	p.N1420N	BCL9_uc010ozr.1_Silent_p.N1334N	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	1420					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GACCTGGCAACCCAGGAAACA	0.542		NA	T	IGH@|IGL@	B-ALL								18	15					0	0	0	0
DCAF6	55827	broad.mit.edu	37	1	167973999	167973999	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:167973999A>T	uc001gew.2	+	10	1588	c.1346A>T	c.(1345-1347)GAG>GTG	p.E449V	DCAF6_uc001gev.2_Missense_Mutation_p.E449V|DCAF6_uc001gex.2_Missense_Mutation_p.E449V|DCAF6_uc010plk.1_Missense_Mutation_p.E418V|DCAF6_uc001gey.2_Missense_Mutation_p.E302V	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	449					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CAGTCTGTTGAGGCATCTGGA	0.373		NA											36	14					0	0	0	0
ZBTB37	84614	broad.mit.edu	37	1	173839375	173839375	+	Silent	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:173839375T>C	uc009wwp.1	+	3	288	c.12T>C	c.(10-12)GGT>GGC	p.G4G	GAS5_uc001gjj.2_5'Flank|GAS5_uc001gjk.2_5'Flank|SNORD74_uc001gjo.1_5'Flank|ZBTB37_uc001gjp.1_Silent_p.G4G|ZBTB37_uc001gjq.3_Silent_p.G4G|ZBTB37_uc001gjr.2_Silent_p.G4G	NM_001122770	NP_001116242	Q5TC79	ZBT37_HUMAN	zinc finger and BTB domain containing 37 isoform	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGGAGAAAGGTGGGAACATAC	0.443		NA											16	22					0	0	0	0
EPRS	2058	broad.mit.edu	37	1	220206926	220206926	+	Silent	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:220206926G>C	uc001hly.1	-	4	576	c.306C>G	c.(304-306)CTC>CTG	p.L102L	EPRS_uc010puf.1_5'UTR|EPRS_uc001hlz.1_Silent_p.L102L|EPRS_uc009xdt.1_5'UTR	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	102					glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	GGCAATGATTGAGTTCATTAA	0.343		NA											20	77					0	0	0	0
DISP1	84976	broad.mit.edu	37	1	223179194	223179194	+	Silent	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:223179194A>G	uc001hnu.1	+	8	4602	c.4455A>G	c.(4453-4455)AGA>AGG	p.R1485R		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	1485					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		GTTGTGGCAGAATTGTGAGAG	0.408		NA											12	61					0	0	0	0
LYST	1130	broad.mit.edu	37	1	235860530	235860530	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:235860530C>T	uc001hxj.2	-	46	10592	c.10417G>A	c.(10417-10419)GTG>ATG	p.V3473M	LYST_uc001hxi.2_Missense_Mutation_p.V697M	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3473					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GGGGAACCCACGTATTCCCCC	0.468		NA							Chediak-Higashi_syndrome				50	13					0	0	0	0
GTPBP4	23560	broad.mit.edu	37	10	1038576	1038576	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:1038576C>G	uc001ift.2	+	2	267	c.196C>G	c.(196-198)CTA>GTA	p.L66V	GTPBP4_uc010qac.1_5'UTR|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_5'UTR|GTPBP4_uc010qae.1_Missense_Mutation_p.L19V	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	66					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		TTCACAAATTCTAACAGATTT	0.343		NA											15	24					0	0	0	0
PRKG1	5592	broad.mit.edu	37	10	54040637	54040637	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:54040637A>G	uc001jjm.2	+	13	1641	c.1447A>G	c.(1447-1449)AGG>GGG	p.R483G	PRKG1_uc001jjo.2_Missense_Mutation_p.R498G|PRKG1_uc009xow.1_Missense_Mutation_p.R201G|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	483	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		AATCATTTACAGGGACCTCAA	0.423		NA											3	82					0	0	0	0
SGPL1	8879	broad.mit.edu	37	10	72610941	72610941	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:72610941A>T	uc001jrm.2	+	4	457	c.235A>T	c.(235-237)AGG>TGG	p.R79W		NM_003901	NP_003892	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	79	Cytoplasmic (Potential).				apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity				0					Pyridoxal Phosphate(DB00114)	TAAGCTCACCAGGAAGATGCC	0.328		NA											28	45					0	0	0	0
SMC3	9126	broad.mit.edu	37	10	112363045	112363045	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:112363045T>A	uc001kze.2	+	28	3705	c.3579T>A	c.(3577-3579)AAT>AAA	p.N1193K		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	1193					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		AGTTCAGAAATAAGGTAATTT	0.279		NA											10	18					0	0	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995517	57995517	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:57995517G>A	uc010rkd.1	-	1	831	c.831C>T	c.(829-831)AGC>AGT	p.S277S		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	277	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				ACGCGATTTGGCTGTCCTCAT	0.557		NA											28	60					0	0	0	0
RSF1	51773	broad.mit.edu	37	11	77411780	77411780	+	Missense_Mutation	SNP	A	A	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:77411780A>C	uc001oyn.2	-	6	2614	c.2494T>G	c.(2494-2496)TCT>GCT	p.S832A	RSF1_uc001oym.2_Missense_Mutation_p.S580A	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	832					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			CTTACTTTAGAATTTGTATCT	0.284		NA											24	16					0	0	0	0
MAML2	84441	broad.mit.edu	37	11	95825060	95825060	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:95825060C>G	uc001pfw.1	-	2	3420	c.2135G>C	c.(2134-2136)AGA>ACA	p.R712T		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	712					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				CCTTACCTGTCTCTGTTGTTG	0.443		NA	T	MECT1|CRTC3	salivary gland mucoepidermoid								9	6					0	0	0	0
PDGFD	80310	broad.mit.edu	37	11	103780424	103780424	+	Nonstop_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:103780424A>T	uc001phq.2	-	7	1483	c.1111T>A	c.(1111-1113)TAA>AAA	p.*371K	PDGFD_uc001php.2_Nonstop_Mutation_p.*365K	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	371					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		ACATTCTCTTATCGAGGTGGT	0.443		NA											10	68					0	0	0	0
VSIG2	23584	broad.mit.edu	37	11	124618415	124618415	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:124618415C>G	uc001qas.2	-	6	798	c.722G>C	c.(721-723)CGA>CCA	p.R241P	VSIG2_uc001qat.2_Missense_Mutation_p.R241P	NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	241	Extracellular (Potential).					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		TCCGGCCACTCGGCCTTGGGA	0.607		NA											25	13					0	0	0	0
STT3A	3703	broad.mit.edu	37	11	125479465	125479465	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr11:125479465C>T	uc001qcd.2	+	10	1208	c.1098C>T	c.(1096-1098)CTC>CTT	p.L366L	STT3A_uc009zbm.2_Silent_p.L366L|STT3A_uc001qce.2_Silent_p.L366L|STT3A_uc010sbg.1_Silent_p.L274L|STT3A_uc009zbn.2_Intron	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	366	Helical; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		ACCTGCAGCTCCTCGTCTTCA	0.453		NA											37	31					0	0	0	0
PZP	5858	broad.mit.edu	37	12	9307319	9307319	+	Missense_Mutation	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:9307319G>T	uc001qvl.2	-	29	3696	c.3667C>A	c.(3667-3669)CTC>ATC	p.L1223I	PZP_uc009zgl.2_Missense_Mutation_p.L1009I	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TGGGCCGTGAGATAAGCGAGG	0.582		NA											20	26					3.62e-10	1.02e-09	1	0
KRT86	3892	broad.mit.edu	37	12	52699946	52699946	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:52699946A>G	uc010snq.1	+	8	1262	c.1129A>G	c.(1129-1131)AAG>GAG	p.K377E	KRT86_uc009zmg.2_Missense_Mutation_p.K377E|KRT81_uc001sac.2_Intron|KRT86_uc001sad.2_Missense_Mutation_p.K377E	NM_002284	NP_002275	O43790	KRT86_HUMAN	keratin 86	377	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(357;0.189)		TGCCCTGCAGAAGGCCAAGCA	0.642		NA									OREG0021845	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	76					0	0	0	0
TMEM194A	23306	broad.mit.edu	37	12	57457026	57457026	+	Silent	SNP	G	G	A	rs148717635	byFrequency	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:57457026G>A	uc001smy.2	-	7	902	c.856C>T	c.(856-858)CTG>TTG	p.L286L	TMEM194A_uc001smx.2_Silent_p.L213L|TMEM194A_uc010sra.1_Silent_p.L27L	NM_001130963	NP_001124435	O14524	T194A_HUMAN	transmembrane protein 194A isoform a	286						integral to membrane					0						AGGCCCATCAGCTGCAAGGTC	0.443		NA											52	81					0	0	0	0
AGAP2	116986	broad.mit.edu	37	12	58124681	58124681	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:58124681T>G	uc001spq.2	-	11	2201	c.2201A>C	c.(2200-2202)AAA>ACA	p.K734T	AGAP2_uc001spp.2_Missense_Mutation_p.K734T|AGAP2_uc001spr.2_Missense_Mutation_p.K398T	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	734	PH.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						GCCCGGGACTTTGACTGTTGT	0.592		NA											3	7					0	0	0	0
XPOT	11260	broad.mit.edu	37	12	64828639	64828639	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:64828639C>G	uc001ssb.2	+	21	3061	c.2635C>G	c.(2635-2637)CTA>GTA	p.L879V		NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	879	Necessary for tRNA-binding, cytoplasmic localization and nuclear export.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		CGCATGTTTCCTAGCACCTTT	0.378		NA											36	59					0	0	0	0
GRIP1	23426	broad.mit.edu	37	12	66932903	66932903	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:66932903C>A	uc001stk.2	-	4	614	c.373G>T	c.(373-375)GGA>TGA	p.G125*	GRIP1_uc010sta.1_Nonsense_Mutation_p.G69*|GRIP1_uc001stl.1_Nonsense_Mutation_p.G69*|GRIP1_uc001stm.2_Nonsense_Mutation_p.G125*	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	125	PDZ 1.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		ACTCTTTCTCCCACATTCTTC	0.363		NA											41	89					6.49e-15	1.88e-14	1	0
PTPRB	5787	broad.mit.edu	37	12	70983891	70983891	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:70983891C>A	uc001swb.3	-	6	1279	c.1249G>T	c.(1249-1251)GTG>TTG	p.V417L	PTPRB_uc010sto.1_Missense_Mutation_p.V417L|PTPRB_uc010stp.1_Intron|PTPRB_uc001swc.3_Missense_Mutation_p.V635L|PTPRB_uc001swa.3_Missense_Mutation_p.V635L|PTPRB_uc001swd.3_Missense_Mutation_p.V634L|PTPRB_uc009zrr.1_Missense_Mutation_p.V514L	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	417	Fibronectin type-III 5.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGCAGCACCACAGAATCATTG	0.512		NA									OREG0021990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	78					2.43e-25	7.15e-25	1	0
DNAH10	196385	broad.mit.edu	37	12	124270320	124270320	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:124270320G>A	uc001uft.3	+	9	1100	c.1075G>A	c.(1075-1077)GTG>ATG	p.V359M		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	359	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGGCTTCCACGTGGTCCTGGA	0.537		NA											23	46					0	0	0	0
MPHOSPH8	54737	broad.mit.edu	37	13	20221396	20221396	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr13:20221396G>A	uc001umh.2	+	3	1192	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K	MPHOSPH8_uc001umf.1_Missense_Mutation_p.E395K|MPHOSPH8_uc001umg.2_Missense_Mutation_p.E395K|MPHOSPH8_uc001umi.2_Missense_Mutation_p.E92K	NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	395					cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		GAGCGGGGAAGAGAGAGGCCT	0.542		NA											5	48					0	0	0	0
OLFM4	10562	broad.mit.edu	37	13	53624472	53624472	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr13:53624472G>A	uc001vhl.2	+	5	1099	c.1099G>A	c.(1099-1101)GCT>ACT	p.A367T	OLFM4_uc001vhk.1_3'UTR	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	367	Olfactomedin-like.				cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		TCTCCCTAATGCTGCCTATAA	0.408		NA											32	46					0	0	0	0
JUB	84962	broad.mit.edu	37	14	23447583	23447583	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr14:23447583G>A	uc001whz.2	-	2	1454	c.1078C>T	c.(1078-1080)CAC>TAC	p.H360Y	JUB_uc001why.2_5'Flank	NM_032876	NP_116265	Q96IF1	JUB_HUMAN	ajuba isoform 1	360	LIM zinc-binding 1.				cell cycle|gene silencing by miRNA|positive regulation of protein complex assembly	cell-cell junction|cytoplasmic mRNA processing body|microtubule organizing center	alpha-catenin binding|zinc ion binding				0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0122)		CACTGGGTGTGGTAGAGGCTG	0.527		NA											77	24					0	0	0	0
MDGA2	161357	broad.mit.edu	37	14	47351355	47351355	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr14:47351355T>A	uc001wwj.3	-	11	2297	c.2101A>T	c.(2101-2103)ACA>TCA	p.T701S	MDGA2_uc001wwh.3_5'UTR|MDGA2_uc001wwi.3_Missense_Mutation_p.T472S|MDGA2_uc010ani.2_Missense_Mutation_p.T261S	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	701					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						AAGTTATATGTAATTAATTCT	0.373		NA											18	17					0	0	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938316	30938316	+	Splice_Site	SNP	G	G	A	rs112615235	by1000genomes	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr15:30938316G>A	uc010azv.1	+	11		c.1127_splice	c.e11-1		ARHGAP11B_uc001zeu.2_Splice_Site			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		TTCCTTGGCAGTGGATAAGTT	0.393		NA											3	26					0	0	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40295429	40295429	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr15:40295429C>T	uc001zkm.1	+	23	3321	c.3271C>T	c.(3271-3273)CGA>TGA	p.R1091*	EIF2AK4_uc010bbj.1_Nonsense_Mutation_p.R792*|EIF2AK4_uc001zkn.1_Nonsense_Mutation_p.R191*|EIF2AK4_uc001zko.1_Nonsense_Mutation_p.R29*	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	1091	Histidyl-tRNA synthetase-like.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		ACTGCTTCCCCGAAACAGACA	0.473		NA											19	41					0	0	0	0
CENPT	80152	broad.mit.edu	37	16	67865170	67865170	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr16:67865170C>T	uc002eun.3	-	10	1201	c.652G>A	c.(652-654)GAC>AAC	p.D218N	CENPT_uc002eum.3_Missense_Mutation_p.D218N|CENPT_uc010vkc.1_5'UTR|CENPT_uc010vkd.1_5'UTR|CENPT_uc010vke.1_Missense_Mutation_p.D115N	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	218					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		GCACCCACGTCTACAGCTCGG	0.607		NA											37	31					0	0	0	0
CBFA2T3	863	broad.mit.edu	37	16	88951552	88951552	+	Missense_Mutation	SNP	G	G	A	rs151180006		TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr16:88951552G>A	uc002fmm.1	-	7	1205	c.1019C>T	c.(1018-1020)CCG>CTG	p.P340L	CBFA2T3_uc002fml.1_Missense_Mutation_p.P254L|CBFA2T3_uc010cif.1_Missense_Mutation_p.P279L|CBFA2T3_uc002fmn.1_Missense_Mutation_p.P315L	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	340	Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		GCGGTAGTGCGGCGGCGGTGT	0.697		NA	T	RUNX1	AML								7	19					0	0	0	0
ABR	29	broad.mit.edu	37	17	1028581	1028581	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:1028581G>A	uc002fsd.2	-	2	293	c.183C>T	c.(181-183)AGC>AGT	p.S61S	ABR_uc002fse.2_Silent_p.S15S|ABR_uc010cjq.1_Silent_p.S73S	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	61					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GGCTGCGGGCGCTGAGCTGCG	0.662		NA											33	70					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:7578212G>A	uc002gim.2	-	6	831	c.637C>T	c.(637-639)CGA>TGA	p.R213*	TP53_uc002gig.1_Nonsense_Mutation_p.R213*|TP53_uc002gih.2_Nonsense_Mutation_p.R213*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.R81*|TP53_uc010cng.1_Nonsense_Mutation_p.R81*|TP53_uc002gii.1_Nonsense_Mutation_p.R81*|TP53_uc010cnh.1_Nonsense_Mutation_p.R213*|TP53_uc010cni.1_Nonsense_Mutation_p.R213*|TP53_uc002gij.2_Nonsense_Mutation_p.R213*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.R120*|TP53_uc002gio.2_Nonsense_Mutation_p.R81*|TP53_uc010vug.1_Nonsense_Mutation_p.R174*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	213	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in sporadic cancers; somatic mutation).|R -> W (in sporadic cancers; somatic mutation).|R -> Q (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R213*(186)|p.R213L(25)|p.R213Q(22)|p.R213fs*34(10)|p.0?(7)|p.R213P(5)|p.R81*(2)|p.R120*(2)|p.R213G(2)|p.K164_P219del(1)|p.D208_V216delDRNTFRHSV(1)|p.D207_R213delDDRNTFR(1)|p.T211_S215delTFRHS(1)|p.R213*33(1)|p.D208fs*1(1)|p.R213>L(1)|p.R209_R213delRNTFR(1)|p.R213fs*2(1)|p.T211fs*28(1)|p.R213_S215>X(1)|p.D207_V216del10(1)|p.R213R(1)|p.R213fs*32(1)|p.R209fs*6(1)|p.R213W(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ACACTATGTCGAAAAGTGTTT	0.532		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			25	13					0	0	0	0
SLC47A2	146802	broad.mit.edu	37	17	19583338	19583338	+	Silent	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:19583338T>G	uc002gwe.3	-	16	1690	c.1515A>C	c.(1513-1515)TCA>TCC	p.S505S	SLC47A2_uc002gwg.3_Silent_p.S469S|SLC47A2_uc002gwf.3_Silent_p.S483S|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_RNA|SLC47A2_uc010cqs.1_RNA	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	505	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					GCTGCCGGCCTGAATGTTTCT	0.498		NA											14	24					0	0	0	0
NXPH3	11248	broad.mit.edu	37	17	47656378	47656378	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr17:47656378C>T	uc002ipa.2	+	2	759	c.475C>T	c.(475-477)CAG>TAG	p.Q159*	NXPH3_uc010wlw.1_Nonsense_Mutation_p.Q159*	NM_007225	NP_009156	O95157	NXPH3_HUMAN	neurexophilin 3 precursor	159	IV (linker domain).				neuropeptide signaling pathway	extracellular region				pancreas(1)|skin(1)	2	all_cancers(4;7.45e-14)|Breast(4;1.08e-27)|all_epithelial(4;2.27e-17)					AGAGTTCCACCAGGAACAGCA	0.567		NA											5	77					0	0	0	0
SS18	6760	broad.mit.edu	37	18	23632698	23632698	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr18:23632698G>A	uc002kvm.2	-	5	575	c.497C>T	c.(496-498)TCT>TTT	p.S166F	SS18_uc002kvn.2_Missense_Mutation_p.S166F|SS18_uc010xbf.1_Missense_Mutation_p.S84F|SS18_uc010xbg.1_Missense_Mutation_p.S114F|SS18_uc010xbh.1_Missense_Mutation_p.S114F|SS18_uc010xbi.1_Missense_Mutation_p.S143F|SS18_uc010dlz.1_Missense_Mutation_p.S114F	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	166	Transcriptional activation.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					TGATGGCACAGAATGGTTGTA	0.458		NA	T	SSX1| SSX2	synovial sarcoma								48	92					0	0	0	0
RTTN	25914	broad.mit.edu	37	18	67843922	67843922	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr18:67843922G>A	uc002lkp.2	-	11	1533	c.1465C>T	c.(1465-1467)CCT>TCT	p.P489S	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_5'UTR|RTTN_uc002lkq.1_Missense_Mutation_p.P489S	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	489							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				TTTTCAACAGGGAGAAGCGTT	0.418		NA											26	59					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9046408	9046408	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:9046408C>T	uc002mkp.2	-	5	35427	c.35223G>A	c.(35221-35223)GAG>GAA	p.E11741E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11743	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGTCACCATCTCTGGTGCAC	0.493		NA											44	52					0	0	0	0
EPS15L1	58513	broad.mit.edu	37	19	16514739	16514739	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:16514739G>C	uc002ndz.1	-	15	1437	c.1431C>G	c.(1429-1431)ATC>ATG	p.I477M	EPS15L1_uc002ndx.2_Missense_Mutation_p.I477M|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Missense_Mutation_p.I367M|EPS15L1_uc010xpf.1_Missense_Mutation_p.I380M|EPS15L1_uc002nea.1_Missense_Mutation_p.I477M|EPS15L1_uc010eah.1_Missense_Mutation_p.I477M|EPS15L1_uc002neb.1_Missense_Mutation_p.I323M|EPS15L1_uc002nec.1_Missense_Mutation_p.I477M	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	477					endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						TCAGTGATGAGATCTGAAATG	0.458		NA											13	21					0	0	0	0
UQCRFS1	7386	broad.mit.edu	37	19	29698472	29698472	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:29698472T>C	uc002nsd.2	-	2	919	c.808A>G	c.(808-810)ATG>GTG	p.M270V		NM_006003	NP_005994	P47985	UCRI_HUMAN	ubiquinol-cytochrome c reductase, Rieske	270	Rieske.				respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex III	2 iron, 2 sulfur cluster binding|metal ion binding|ubiquinol-cytochrome-c reductase activity				0	Breast(6;0.0545)|Esophageal squamous(110;0.239)		Lung(7;0.092)			ACAATCACCATATCGTCACTG	0.473		NA											14	26					0	0	0	0
ZNF507	22847	broad.mit.edu	37	19	32844889	32844889	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:32844889A>G	uc002nte.2	+	3	1425	c.1153A>G	c.(1153-1155)ATC>GTC	p.I385V	ZNF507_uc002ntc.2_Missense_Mutation_p.I385V|ZNF507_uc010xrn.1_Missense_Mutation_p.I385V|ZNF507_uc002ntd.2_Missense_Mutation_p.I385V	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	385					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					ACAGAAAATCATCAGCAGCAG	0.458		NA											29	44					0	0	0	0
ZNF345	25850	broad.mit.edu	37	19	37368870	37368870	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:37368870G>A	uc002oex.2	+	3	1516	c.1138G>A	c.(1138-1140)GGT>AGT	p.G380S	ZNF345_uc002oey.3_Missense_Mutation_p.G380S|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	380	C2H2-type 12.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAAGGCCTTTGGTAGTGGCTC	0.418		NA											14	50					0	0	0	0
ZNF345	25850	broad.mit.edu	37	19	37368948	37368948	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:37368948T>G	uc002oex.2	+	3	1594	c.1216T>G	c.(1216-1218)TCC>GCC	p.S406A	ZNF345_uc002oey.3_Missense_Mutation_p.S406A|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	406	C2H2-type 13.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATGTGGAAAGTCCTTTAGTAG	0.433		NA											8	42					0	0	0	0
ZNF225	7768	broad.mit.edu	37	19	44636171	44636171	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:44636171C>T	uc002oyj.1	+	5	1647	c.1404C>T	c.(1402-1404)GCC>GCT	p.A468A	ZNF225_uc010eje.1_Silent_p.A385A|ZNF225_uc010ejf.1_Silent_p.A468A	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	468	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				TTGGCTGGGCCTCGTGTCTTT	0.418		NA											27	34					0	0	0	0
ZNF233	353355	broad.mit.edu	37	19	44777755	44777755	+	Silent	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:44777755T>C	uc002oyz.1	+	5	1069	c.942T>C	c.(940-942)TAT>TAC	p.Y314Y	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Silent_p.Y129Y	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	314	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				AGAAATGCTATAGGAATGGTG	0.488		NA											22	29					0	0	0	0
COLEC11	78989	broad.mit.edu	37	2	3691423	3691423	+	Silent	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:3691423G>T	uc002qya.2	+	7	679	c.531G>T	c.(529-531)CTG>CTT	p.L177L	COLEC11_uc002qxz.2_Silent_p.L174L|COLEC11_uc002qyb.2_Silent_p.L153L|COLEC11_uc002qyc.2_Silent_p.L153L|COLEC11_uc010ewo.2_Silent_p.L129L|COLEC11_uc010ewp.2_Silent_p.L151L|COLEC11_uc010ewq.2_Silent_p.L127L|COLEC11_uc010ewr.2_Silent_p.L127L|COLEC11_uc010ews.2_Silent_p.L103L	NM_024027	NP_076932	Q9BWP8	COL11_HUMAN	collectin sub-family member 11 isoform a	177	C-type lectin.					collagen	mannose binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.127)		GGGGCACGCTGAGCATGCCCA	0.667		NA											19	26					1.02e-10	2.87e-10	1	0
KCNS3	3790	broad.mit.edu	37	2	18112633	18112633	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:18112633C>T	uc002rcv.2	+	3	809	c.358C>T	c.(358-360)CGC>TGC	p.R120C	KCNS3_uc002rcw.2_Missense_Mutation_p.R120C	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	120	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTGCAGCAATCGCTACCAGGA	0.507		NA											15	78					0	0	0	0
ALK	238	broad.mit.edu	37	2	29456487	29456487	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:29456487C>A	uc002rmy.2	-	14	3338	c.2431G>T	c.(2431-2433)GTG>TTG	p.V811L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	811	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CACTCATGCACGCTTCTGTTC	0.488		NA	T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				35	61					1.27e-14	3.66e-14	1	0
C2orf65	130951	broad.mit.edu	37	2	74802648	74802648	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:74802648T>A	uc002smy.2	-	7	1108	c.991A>T	c.(991-993)AGA>TGA	p.R331*	C2orf65_uc010ysa.1_Nonsense_Mutation_p.R331*|C2orf65_uc002smz.2_Nonsense_Mutation_p.R331*|C2orf65_uc010ffp.2_Nonsense_Mutation_p.R49*|C2orf65_uc002smx.2_Nonsense_Mutation_p.R87*	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	331					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						CTTGTAGGTCTGAGGATGAAC	0.483		NA											40	64					0	0	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529787	80529787	+	Silent	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:80529787G>T	uc002sok.1	-	2	1428	c.1158C>A	c.(1156-1158)CCC>CCA	p.P386P	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	386	Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						AGCTGGCAGGGGGCCCCAGAT	0.726		NA								HNSCC(69;0.2)			9	20					9.7e-10	2.71e-09	1	0
SH3RF3	344558	broad.mit.edu	37	2	110015122	110015122	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:110015122T>G	uc010ywt.1	+	4	1022	c.1022T>G	c.(1021-1023)CTG>CGG	p.L341R		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	341							zinc ion binding			ovary(1)	1						AATGCCTCCCTGCCCTCTGAC	0.617		NA											3	7					0	0	0	0
KIAA1715	80856	broad.mit.edu	37	2	176794733	176794733	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:176794733C>A	uc002ukc.1	-	13	1442	c.1249G>T	c.(1249-1251)GAT>TAT	p.D417Y	KIAA1715_uc010zer.1_Missense_Mutation_p.D448Y|KIAA1715_uc010fqw.1_Missense_Mutation_p.D483Y|KIAA1715_uc010zes.1_Missense_Mutation_p.D419Y|KIAA1715_uc002ukd.1_Missense_Mutation_p.D294Y|KIAA1715_uc010zet.1_RNA	NM_030650	NP_085153	Q9C0E8	LNP_HUMAN	Lunapark	417	Cytoplasmic (Potential).					integral to membrane	protein binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			AGTTCAGGATCAGGAATAGAA	0.428		NA											24	61					1.64e-13	4.73e-13	1	0
KIAA1715	80856	broad.mit.edu	37	2	176794780	176794780	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:176794780G>A	uc002ukc.1	-	13	1395	c.1202C>T	c.(1201-1203)TCA>TTA	p.S401L	KIAA1715_uc010zer.1_Missense_Mutation_p.S432L|KIAA1715_uc010fqw.1_Missense_Mutation_p.S467L|KIAA1715_uc010zes.1_Missense_Mutation_p.S403L|KIAA1715_uc002ukd.1_Missense_Mutation_p.S278L|KIAA1715_uc010zet.1_RNA	NM_030650	NP_085153	Q9C0E8	LNP_HUMAN	Lunapark	401	Cytoplasmic (Potential).					integral to membrane	protein binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0793)			TTCAATCACTGAGGCTTCCTC	0.438		NA											35	59					0	0	0	0
TMEFF2	23671	broad.mit.edu	37	2	193049123	193049123	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:193049123C>T	uc002utc.2	-	3	763	c.369G>A	c.(367-369)CAG>CAA	p.Q123Q	TMEFF2_uc002utd.1_Silent_p.Q123Q	NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	123	Kazal-like 1.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			TCTCACTCTGCTGTTTGCATG	0.473		NA											25	43					0	0	0	0
DOCK10	55619	broad.mit.edu	37	2	225653885	225653885	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr2:225653885T>A	uc010fwz.1	-	48	5553	c.5314A>T	c.(5314-5316)ATG>TTG	p.M1772L	DOCK10_uc002vob.2_Missense_Mutation_p.M1766L|DOCK10_uc002voa.2_Missense_Mutation_p.M428L|DOCK10_uc002voc.2_Missense_Mutation_p.M593L	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1772	DHR-2.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		ATAGAGAACATGCCTTGGGAG	0.373		NA											5	19					0	0	0	0
NAPB	63908	broad.mit.edu	37	20	23401954	23401954	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr20:23401954C>T	uc002wta.2	-	1	203	c.86G>A	c.(85-87)CGA>CAA	p.R29Q	NAPB_uc002wtc.2_5'UTR|NAPB_uc002wtb.2_Missense_Mutation_p.R29Q|NAPB_uc002wtd.3_RNA|NAPB_uc010zst.1_Missense_Mutation_p.R29Q	NM_022080	NP_071363	Q9H115	SNAB_HUMAN	N-ethylmaleimide-sensitive factor attachment	29					intracellular protein transport|vesicle-mediated transport	membrane				ovary(1)	1	Lung NSC(19;0.0646)|Colorectal(13;0.0993)|all_lung(19;0.143)					AAACAGCCCTCGGAGGAAGGA	0.697		NA											4	7					0	0	0	0
KRTAP26-1	388818	broad.mit.edu	37	21	31692054	31692054	+	Silent	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr21:31692054A>G	uc002ynw.2	-	1	554	c.300T>C	c.(298-300)GCT>GCC	p.A100A		NM_203405	NP_981950	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	100						intermediate filament				ovary(1)	1						AGAAGAAAGAAGCAGGAAGAA	0.542		NA											25	74					0	0	0	0
MORC2	22880	broad.mit.edu	37	22	31330915	31330915	+	Silent	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:31330915G>C	uc003aje.1	-	20	3224	c.1860C>G	c.(1858-1860)GTC>GTG	p.V620V		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	682							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						ATGCAGTCTTGACGAGAGTGT	0.602		NA											26	56					0	0	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083357	44083357	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:44083357C>T	uc003bdy.1	-	11	1351	c.1136G>A	c.(1135-1137)AGA>AAA	p.R379K	EFCAB6_uc003bdz.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzi.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Missense_Mutation_p.R376K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATACCTATTTCTTTTTGTCAG	0.308		NA											7	36					0	0	0	0
PLXNB2	23654	broad.mit.edu	37	22	50716358	50716358	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:50716358A>G	uc003bkv.3	-	32	5078	c.4972T>C	c.(4972-4974)TTC>CTC	p.F1658L	PLXNB2_uc003bkt.1_Missense_Mutation_p.F450L|PLXNB2_uc003bku.1_Missense_Mutation_p.F643L	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1658	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGGAAGTCGAAGAAGTACTTG	0.602		NA											29	45					0	0	0	0
SHANK3	85358	broad.mit.edu	37	22	51117039	51117039	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:51117039C>T	uc003bne.1	+	4	366	c.366C>T	c.(364-366)TAC>TAT	p.Y122Y		NM_001080420	NP_001073889	F2Z3L0	F2Z3L0_HUMAN	SH3 and multiple ankyrin repeat domains 3	122										central_nervous_system(1)	1		all_cancers(38;3.75e-11)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.22)		TCATGGACTACGTCCAGCTGC	0.602		NA											8	17					0	0	0	0
OXSM	54995	broad.mit.edu	37	3	25832618	25832618	+	Missense_Mutation	SNP	C	C	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:25832618C>A	uc003cdn.2	+	2	214	c.107C>A	c.(106-108)CCA>CAA	p.P36Q	NGLY1_uc011awo.1_5'Flank|OXSM_uc011awp.1_5'UTR|OXSM_uc010hfh.2_Missense_Mutation_p.P36Q	NM_017897	NP_060367	Q9NWU1	OXSM_HUMAN	3-oxoacyl-ACP synthase, mitochondrial isoform 1	36					acyl-CoA metabolic process|medium-chain fatty acid biosynthetic process|short-chain fatty acid biosynthetic process	mitochondrion	3-oxoacyl-[acyl-carrier-protein] synthase activity			ovary(1)|breast(1)	2						GGAACTGTGCCAATATCCAGA	0.423		NA											46	32					4.07e-11	1.15e-10	1	0
CHDH	55349	broad.mit.edu	37	3	53854579	53854579	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:53854579G>A	uc003dgz.2	-	6	1482	c.1042C>T	c.(1042-1044)CGC>TGC	p.R348C		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	348					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	GTGATAGGGCGGGTGCATGCC	0.557		NA											18	72					0	0	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113664258	113664258	+	Missense_Mutation	SNP	T	T	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:113664258T>G	uc003eaq.3	+	18	1998	c.1922T>G	c.(1921-1923)CTC>CGC	p.L641R	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.L474R|GRAMD1C_uc003eas.2_Missense_Mutation_p.L436R|GRAMD1C_uc003eat.2_Missense_Mutation_p.L300R|ZDHHC23_uc003eau.2_5'Flank|ZDHHC23_uc003eav.2_5'Flank	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	641						integral to membrane				ovary(2)|skin(1)	3						AAGAGCTCACTCATTATGCTT	0.323		NA											24	50					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124211627	124211627	+	Missense_Mutation	SNP	T	T	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:124211627T>A	uc003ehg.2	+	32	4851	c.4724T>A	c.(4723-4725)ATT>AAT	p.I1575N	KALRN_uc010hrv.1_Missense_Mutation_p.I1566N|KALRN_uc003ehf.1_Missense_Mutation_p.I1575N|KALRN_uc011bjy.1_Missense_Mutation_p.I1566N	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1575	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ATCAAGAACATTCGAGAAGTG	0.463		NA											24	46					0	0	0	0
OSBPL11	114885	broad.mit.edu	37	3	125271261	125271261	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:125271261A>G	uc003eic.2	-	9	2155	c.1418T>C	c.(1417-1419)TTT>TCT	p.F473S		NM_022776	NP_073613	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	473					lipid transport		lipid binding			ovary(3)|breast(1)|kidney(1)	5						AGAACTGCTAAAAACACTGGA	0.453		NA											15	27					0	0	0	0
PLSCR1	5359	broad.mit.edu	37	3	146251261	146251261	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:146251261G>C	uc003evx.3	-	3	478	c.90C>G	c.(88-90)TTC>TTG	p.F30L	PLSCR1_uc003evy.3_Missense_Mutation_p.F23L|PLSCR1_uc011bnn.1_Missense_Mutation_p.S22C|PLSCR1_uc003evz.3_RNA|PLSCR1_uc003ewa.2_Missense_Mutation_p.F30L	NM_021105	NP_066928	O15162	PLS1_HUMAN	phospholipid scramblase 1	30	Cytoplasmic.				phospholipid scrambling|platelet activation|response to virus	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity|SH3 domain binding			ovary(2)	2						CTTTACCTTGGAATGCTGTCG	0.294		NA											24	92					0	0	0	0
AGTR1	185	broad.mit.edu	37	3	148458977	148458977	+	Missense_Mutation	SNP	T	T	C	rs150629733	byFrequency	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:148458977T>C	uc003ewg.2	+	4	601	c.155T>C	c.(154-156)GTC>GCC	p.V52A	AGTR1_uc003ewh.2_Missense_Mutation_p.V52A|AGTR1_uc003ewi.2_Missense_Mutation_p.V52A|AGTR1_uc003ewj.2_Missense_Mutation_p.V52A|AGTR1_uc003ewk.2_Missense_Mutation_p.V52A	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	52	Helical; Name=1; (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	GTGGTGATAGTCATTTACTTT	0.378		NA											20	73					0	0	0	0
PHC3	80012	broad.mit.edu	37	3	169824653	169824653	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:169824653G>T	uc010hws.1	-	12	2463	c.2399C>A	c.(2398-2400)TCA>TAA	p.S800*	PHC3_uc003fgl.2_Nonsense_Mutation_p.S812*|PHC3_uc011bpq.1_Nonsense_Mutation_p.S759*	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	polyhomeotic like 3	800	FCS-type.				multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			GAATCGTTTTGACCGCAAAAA	0.373		NA											13	124					9.31e-06	2.49e-05	1	0
PIK3CA	5290	broad.mit.edu	37	3	178921501	178921501	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:178921501G>C	uc003fjk.2	+	5	1140	c.983G>C	c.(982-984)TGG>TCG	p.W328S		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	328					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AAATCCCTTTGGGTTATAAAT	0.358		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			28	328					0	0	0	0
HRG	3273	broad.mit.edu	37	3	186395211	186395211	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr3:186395211G>T	uc003fqq.2	+	7	1140	c.1117G>T	c.(1117-1119)GAA>TAA	p.E373*		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	373	His/Pro-rich (HRR).				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		ccatcctcatgaacatgatac	0.045		NA											29	10					1.77e-15	5.16e-15	1	0
THAP6	152815	broad.mit.edu	37	4	76442145	76442145	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:76442145C>T	uc003him.2	+	3	341	c.244C>T	c.(244-246)CCT>TCT	p.P82S	RCHY1_uc003hij.2_5'Flank|RCHY1_uc003hik.2_5'Flank|RCHY1_uc003hil.2_5'Flank|RCHY1_uc010iip.2_5'Flank|RCHY1_uc010iiq.2_5'Flank|RCHY1_uc010iir.2_5'Flank|THAP6_uc010iis.1_Missense_Mutation_p.P41S|THAP6_uc003hin.2_Missense_Mutation_p.P82S|THAP6_uc011cbm.1_Missense_Mutation_p.P82S|THAP6_uc010iiu.1_RNA|THAP6_uc003hio.1_RNA|THAP6_uc010iiv.2_Missense_Mutation_p.P82S	NM_144721	NP_653322	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	82	THAP-type.					microtubule cytoskeleton	DNA binding|metal ion binding				0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TAAACTGAAACCTGGAGTCAT	0.363		NA											5	33					0	0	0	0
C4orf29	80167	broad.mit.edu	37	4	128951815	128951815	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:128951815A>T	uc003ifr.2	+	12	1547	c.1229A>T	c.(1228-1230)CAA>CTA	p.Q410L	C4orf29_uc003ifs.2_Missense_Mutation_p.Q338L|C4orf29_uc003ift.2_Missense_Mutation_p.Q275L|C4orf29_uc003ifu.2_Missense_Mutation_p.Q275L|C4orf29_uc010inz.2_Missense_Mutation_p.Q241L|C4orf29_uc003ifv.2_Missense_Mutation_p.Q275L	NM_001039717	NP_001034806	Q0P651	CD029_HUMAN	hypothetical protein LOC80167 precursor	410						extracellular region				ovary(1)	1						CTTTTTAAACAAGGACTCTTC	0.353		NA											25	36					0	0	0	0
CDKN2AIP	55602	broad.mit.edu	37	4	184368144	184368144	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:184368144A>G	uc003ivp.1	+	3	1469	c.1307A>G	c.(1306-1308)AAG>AGG	p.K436R	CDKN2AIP_uc003ivq.1_Missense_Mutation_p.K181R	NM_017632	NP_060102	Q9NXV6	CARF_HUMAN	CDKN2A interacting protein	436					negative regulation of cell growth|positive regulation of signal transduction|regulation of protein stability	granular component|nucleoplasm	double-stranded RNA binding|p53 binding				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		GTGAAACAGAAGCAACCTTTT	0.408		NA											24	38					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187540589	187540589	+	Missense_Mutation	SNP	T	T	C	rs139480903	by1000genomes	TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr4:187540589T>C	uc003izf.2	-	10	7339	c.7151A>G	c.(7150-7152)AAT>AGT	p.N2384S		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2384	Extracellular (Potential).|Cadherin 21.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TGGATTATCATTGAGGTCGGT	0.502		NA								HNSCC(5;0.00058)			18	39					0	0	0	0
SLC6A18	348932	broad.mit.edu	37	5	1244337	1244337	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:1244337T>C	uc003jby.1	+	10	1468	c.1345T>C	c.(1345-1347)TGC>CGC	p.C449R		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	449	Helical; Name=9; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AGGGCTGGTCTGCCTGGTCTG	0.627		NA											26	37					0	0	0	0
C5orf34	375444	broad.mit.edu	37	5	43506112	43506112	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:43506112G>C	uc003jnz.1	-	5	987	c.670C>G	c.(670-672)CTG>GTG	p.L224V	C5orf34_uc011cpx.1_Missense_Mutation_p.L110V	NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	224										breast(1)	1	Lung NSC(6;2.07e-05)					GGCGAAGGCAGCTCTTCCCTC	0.423		NA											50	88					0	0	0	0
ZNF366	167465	broad.mit.edu	37	5	71756463	71756463	+	Silent	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:71756463C>G	uc003kce.1	-	2	1047	c.861G>C	c.(859-861)GGG>GGC	p.G287G		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	287	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TGAAGAGCTTCCCGCAGTGCG	0.627		NA											23	50					0	0	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237238	140237238	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:140237238C>T	uc003lhx.2	+	1	1605	c.1605C>T	c.(1603-1605)AGC>AGT	p.S535S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Silent_p.S535S	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	535	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGGTGAGCGCGCGCGATG	0.682		NA											54	39					0	0	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502789	140502789	+	Silent	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr5:140502789A>T	uc003lip.1	+	1	1209	c.1209A>T	c.(1207-1209)GTA>GTT	p.V403V		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	403	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGGTAACAGAGAGAC	0.448		NA											32	19					0	0	0	0
HSPA1A	3303	broad.mit.edu	37	6	31785354	31785354	+	Silent	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr6:31785354C>T	uc003nxj.2	+	1	2064	c.1821C>T	c.(1819-1821)ATC>ATT	p.I607I	HSPA1L_uc003nxh.2_5'Flank|HSPA1L_uc010jte.2_5'Flank|HSPA1A_uc011doj.1_Silent_p.I370I|HSPA1A_uc003nxi.1_Silent_p.I442I|uc011dok.1_RNA	NM_005345	NP_005336	P08107	HSP71_HUMAN	heat shock 70kDa protein 1A	607					anti-apoptosis|mRNA catabolic process|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of inclusion body assembly|protein refolding|response to unfolded protein	cytosol|endoplasmic reticulum|inclusion body|mitochondrion|nuclear speck|perinuclear region of cytoplasm|ribonucleoprotein complex	ATP binding|protein binding involved in protein folding|protein N-terminus binding|receptor activity|ubiquitin protein ligase binding|unfolded protein binding			ovary(1)	1						ACCCCATCATCAGCGGACTGT	0.632		NA											30	82					0	0	0	0
RTN4IP1	84816	broad.mit.edu	37	6	107031256	107031256	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr6:107031256T>C	uc003prj.2	-	8	1507	c.1030A>G	c.(1030-1032)ATG>GTG	p.M344V	RTN4IP1_uc010kdd.2_Silent_p.S220S|RTN4IP1_uc003prk.2_Missense_Mutation_p.M244V	NM_032730	NP_116119	Q8WWV3	RT4I1_HUMAN	reticulon 4 interacting protein 1 precursor	344						mitochondrion	oxidoreductase activity|zinc ion binding				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;9.45e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0144)	Epithelial(6;0.000873)|all cancers(7;0.00363)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0394)	all cancers(137;0.113)|BRCA - Breast invasive adenocarcinoma(108;0.127)|Epithelial(106;0.144)		CCACTGGCCATGAAAAATGCC	0.413		NA											20	28					0	0	0	0
MACC1	346389	broad.mit.edu	37	7	20198105	20198105	+	Missense_Mutation	SNP	C	C	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:20198105C>T	uc003sus.3	-	5	2188	c.1879G>A	c.(1879-1881)GAT>AAT	p.D627N	MACC1_uc010kug.2_Missense_Mutation_p.D627N	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	627					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						AAGACACTATCTGACATAAAC	0.353		NA											33	76					0	0	0	0
ZNF107	51427	broad.mit.edu	37	7	64166764	64166764	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:64166764A>G	uc003ttd.2	+	7	868	c.82A>G	c.(82-84)AAA>GAA	p.K28E	ZNF107_uc003tte.2_Missense_Mutation_p.K28E	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	28					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TTCTTTCCAGAAAGTGACACT	0.363		NA											26	25					0	0	0	0
SMURF1	57154	broad.mit.edu	37	7	98638089	98638089	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:98638089A>G	uc003upu.1	-	14	1860	c.1540T>C	c.(1540-1542)TTC>CTC	p.F514L	SMURF1_uc003upv.1_Missense_Mutation_p.F488L|SMURF1_uc003upt.2_Missense_Mutation_p.F488L	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	514	HECT.				BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			TGCTTGTAGAAGGGCACTGTG	0.542		NA									OREG0018189	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	66	55					0	0	0	0
SMURF1	57154	broad.mit.edu	37	7	98645385	98645385	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:98645385G>A	uc003upu.1	-	11	1472	c.1152C>T	c.(1150-1152)GTC>GTT	p.V384V	SMURF1_uc003upv.1_Silent_p.V358V|SMURF1_uc003upt.2_Silent_p.V358V	NM_020429	NP_065162	Q9HCE7	SMUF1_HUMAN	Smad ubiquitination regulatory factor 1 isoform	384					BMP signaling pathway|cell differentiation|ectoderm development|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein export from nucleus|protein localization at cell surface|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|plasma membrane	activin binding|I-SMAD binding|R-SMAD binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|lung(1)	4	all_cancers(62;1.05e-08)|all_epithelial(64;4.34e-09)|Lung NSC(181;0.00902)|all_lung(186;0.0145)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)|Lung(104;0.224)			CGTGTCTGAGGACTTTCAGCT	0.567		NA											123	97					0	0	0	0
SLC4A2	6522	broad.mit.edu	37	7	150771897	150771897	+	Missense_Mutation	SNP	A	A	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:150771897A>G	uc003wit.3	+	19	3272	c.3016A>G	c.(3016-3018)ATT>GTT	p.I1006V	SLC4A2_uc011kve.1_Missense_Mutation_p.I997V|SLC4A2_uc003wiu.3_Missense_Mutation_p.I992V|SLC4A2_uc003wiv.3_Missense_Mutation_p.I200V|uc011kvf.1_3'UTR	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	1006	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTGGTCTTCATTCTCATCTT	0.597		NA											10	15					0	0	0	0
MLL3	58508	broad.mit.edu	37	7	151945031	151945031	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr7:151945031T>C	uc003wla.2	-	14	2707	c.2488A>G	c.(2488-2490)ATT>GTT	p.I830V		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	830					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CTCTTAGTAATAGCTGGTTTA	0.383		NA	N		medulloblastoma								8	167					0	0	0	0
CCNE2	9134	broad.mit.edu	37	8	95897779	95897779	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr8:95897779T>C	uc003yhc.2	-	8	717	c.608A>G	c.(607-609)TAT>TGT	p.Y203C	CCNE2_uc003yhd.2_Missense_Mutation_p.Y203C	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	203					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TTTAGGAGCATAGATTTCCTT	0.229		NA											26	31					0	0	0	0
TRHR	7201	broad.mit.edu	37	8	110100298	110100298	+	Missense_Mutation	SNP	A	A	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr8:110100298A>T	uc003ymz.3	+	1	573	c.557A>T	c.(556-558)AAT>ATT	p.N186I		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	186	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			ATCTCCAGGAATTACTACTCA	0.403		NA											14	51					0	0	0	0
TAF2	6873	broad.mit.edu	37	8	120809913	120809913	+	Missense_Mutation	SNP	C	C	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr8:120809913C>G	uc003you.2	-	7	1236	c.966G>C	c.(964-966)ATG>ATC	p.M322I		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	322					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			TAAAAATGCTCATGGAAGCAT	0.338		NA											11	25					0	0	0	0
IL11RA	3590	broad.mit.edu	37	9	34655639	34655639	+	Silent	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:34655639G>A	uc003zvi.2	+	3	1494	c.138G>A	c.(136-138)CTG>CTA	p.L46L	IL11RA_uc011loq.1_Silent_p.L46L|IL11RA_uc003zvj.2_Silent_p.L46L|IL11RA_uc003zvk.2_Silent_p.L46L|IL11RA_uc010mke.2_Translation_Start_Site|IL11RA_uc003zvl.2_RNA	NM_004512	NP_004503	Q14626	I11RA_HUMAN	interleukin 11 receptor, alpha isoform 1	46	Ig-like C2-type.|Extracellular (Potential).					integral to plasma membrane	cytokine receptor activity			skin(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.174)	Oprelvekin(DB00038)	CCGTGAAGCTGTGTTGTCCTG	0.582		NA											10	12					0	0	0	0
COL15A1	1306	broad.mit.edu	37	9	101817638	101817638	+	Missense_Mutation	SNP	G	G	A			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:101817638G>A	uc004azb.1	+	34	3382	c.3176G>A	c.(3175-3177)GGA>GAA	p.G1059E		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1059	Triple-helical region 8 (COL8).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GGCCTGCCCGGAAATCCAGGC	0.542		NA											27	63					0	0	0	0
OR1L4	254973	broad.mit.edu	37	9	125486501	125486501	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:125486501T>C	uc004bmu.1	+	1	233	c.233T>C	c.(232-234)ATA>ACA	p.I78T		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACAACAGTCATAGTGCCTAAG	0.443		NA											34	100					0	0	0	0
SLC2A6	11182	broad.mit.edu	37	9	136338606	136338607	+	Nonsense_Mutation	DNP	GC	GC	AT			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:136338606_136338607GC>AT	uc004cee.2	-	8	1247_1248	c.1152_1153GC>AT	c.(1150-1155)GCGCAG>GCATAG	p.Q385*	SLC2A6_uc004cef.2_Intron|SLC2A6_uc004ceg.2_Nonsense_Mutation_p.Q362*	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	385	Extracellular (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		GCCAGGGGCTGCGCCAAGTCCC	0.663		NA											8	20					0	0	0	0
ABCB7	22	broad.mit.edu	37	X	74288843	74288843	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chrX:74288843T>C	uc004eca.2	-	12	1683	c.1658A>G	c.(1657-1659)CAG>CGG	p.Q553R	ABCB7_uc004ebz.2_Missense_Mutation_p.Q554R|ABCB7_uc011mqn.1_Missense_Mutation_p.Q527R|ABCB7_uc010nls.2_Missense_Mutation_p.Q514R|ABCB7_uc010nlt.2_Missense_Mutation_p.Q513R	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	553	ABC transporter.				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						TTTAAATACCTGAGGTACCAC	0.403		NA											3	73					0	0	0	0
RBM41	55285	broad.mit.edu	37	X	106358744	106358744	+	Missense_Mutation	SNP	G	G	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chrX:106358744G>C	uc004emz.2	-	4	392	c.361C>G	c.(361-363)CTT>GTT	p.L121V	RBM41_uc004emy.1_Missense_Mutation_p.L121V	NM_018301	NP_060771	Q96IZ5	RBM41_HUMAN	RNA binding motif protein 41	121							nucleotide binding|RNA binding			ovary(1)	1						ATATCTTGAAGACGGTTCTGT	0.463		NA											32	13					0	0	0	0
TMLHE	55217	broad.mit.edu	37	X	154736595	154736595	+	Missense_Mutation	SNP	T	T	C			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chrX:154736595T>C	uc004fnn.2	-	6	1125	c.959A>G	c.(958-960)AAT>AGT	p.N320S	TMLHE_uc004fno.2_Missense_Mutation_p.N320S|TMLHE_uc004fnp.3_Missense_Mutation_p.N320S	NM_018196	NP_060666	Q9NVH6	TMLH_HUMAN	trimethyllysine hydroxylase, epsilon	320					carnitine biosynthetic process	mitochondrial matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|trimethyllysine dioxygenase activity			ovary(1)	1	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Succinic acid(DB00139)|Vitamin C(DB00126)	TGGGTAGATATTTAAGACTGG	0.373		NA											70	14					0	0	0	0
CPT2	1376	broad.mit.edu	37	1	53676319	53676319	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr1:53676319delC	uc001cvb.3	+	4	1488	c.973delC	c.(973-975)CTCfs	p.L325fs		NM_000098	NP_000089	P23786	CPT2_HUMAN	carnitine O-palmitoyltransferase precursor	325	Mitochondrial matrix (By similarity).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	mitochondrial inner membrane	carnitine O-palmitoyltransferase activity				0					L-Carnitine(DB00583)|Perhexiline(DB01074)	AGTGTTCTGTCTCTGCCTAGA	0.512		NA											28	50	---	---	---	---	NA	NA	NA	NA
HMX3	340784	broad.mit.edu	37	10	124895904	124895904	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr10:124895904delC	uc010quc.1	+	1	338	c.338delC	c.(337-339)TCCfs	p.S113fs		NM_001105574	NP_001099044	A6NHT5	HMX3_HUMAN	H6 family homeobox 3	113					cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.122)|COAD - Colon adenocarcinoma(40;0.141)		CTGGAGCGCTCCCCAGCCTGG	0.672		NA											2	4	---	---	---	---	NA	NA	NA	NA
PRB1	5542	broad.mit.edu	37	12	11506549	11506549	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr12:11506549delG	uc001qzw.1	-	4	525	c.488delC	c.(487-489)CCAfs	p.P163fs	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	224	9.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			ACCTCCTTGTGGGGGTGGTCC	0.612		NA											94	82	---	---	---	---	NA	NA	NA	NA
ZNF737	100129842	broad.mit.edu	37	19	20728437	20728437	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr19:20728437delT	uc002npa.2	-	4	752	c.572delA	c.(571-573)CATfs	p.H191fs		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	191					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AATTTTCTTATGTGTAGTAAG	0.358		NA											12	29	---	---	---	---	NA	NA	NA	NA
SERPIND1	3053	broad.mit.edu	37	22	21138419	21138420	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:21138419_21138420insG	uc002ztb.1	+	3	1116_1117	c.1049_1050insG	c.(1048-1050)GTGfs	p.V350fs	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Frame_Shift_Ins_p.V378fs	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	350					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	CTGGAATACGTGGGGGGCATCA	0.54		NA									OREG0026325	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	72	---	---	---	---	NA	NA	NA	NA
MEI1	150365	broad.mit.edu	37	22	42191530	42191531	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr22:42191530_42191531insT	uc003baz.1	+	29	3675_3676	c.3650_3651insT	c.(3649-3651)CATfs	p.H1217fs	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Frame_Shift_Ins_p.H603fs|MEI1_uc003bbc.1_Frame_Shift_Ins_p.H585fs|MEI1_uc010gym.1_Frame_Shift_Ins_p.H550fs|MEI1_uc003bbd.1_Intron|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA|MEI1_uc003bbf.2_Frame_Shift_Ins_p.H231fs|MEI1_uc003bbg.2_Intron	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	1217							binding			central_nervous_system(1)|skin(1)	2						CAGGCCCTGCATGGCTTCTTCC	0.574		NA											23	36	---	---	---	---	NA	NA	NA	NA
SURF2	6835	broad.mit.edu	37	9	136227265	136227266	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-CX-7082-01A-11D-2012-08	TCGA-CX-7082-10A-01D-2013-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	4c6c96b8-958e-4235-9673-8bf4ce0e6b38	9cf2fe5e-2262-4970-892a-5c0e5571a4d6	g.chr9:136227265_136227266delGA	uc004cdi.2	+	5	690_691	c.642_643delGA	c.(640-645)AGGAGAfs	p.R214fs		NM_017503	NP_059973	Q15527	SURF2_HUMAN	surfeit 2	214_215							protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.87e-07)|Epithelial(140;4.02e-06)|all cancers(34;3.71e-05)		ATGAGAGCAGGAGAGAGACGAC	0.554		NA											9	29	---	---	---	---	NA	NA	NA	NA
