Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
KLHDC7A	127707	broad.mit.edu	37	1	18809462	18809462	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:18809462G>A	uc001bax.2	+	1	2039	c.1987G>A	c.(1987-1989)GGG>AGG	p.G663R	KLHDC7A_uc009vpg.2_Missense_Mutation_p.G445R	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	663	Kelch 5.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CGGCCCCACCGGGGGCAGCAA	0.677		NA											11	27					0	0	0	0
MAP3K6	9064	broad.mit.edu	37	1	27690468	27690468	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:27690468G>A	uc001bny.1	-	5	1053	c.804C>T	c.(802-804)AGC>AGT	p.S268S	MAP3K6_uc009vsw.1_Silent_p.S260S|MAP3K6_uc001bnz.1_5'Flank	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	268					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GCAGCTCCACGCTGTCCAGTC	0.537		NA											7	17					0	0	0	0
C1orf175	374977	broad.mit.edu	37	1	55148401	55148401	+	Silent	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:55148401G>T	uc010ooe.1	+	14	2778	c.2454G>T	c.(2452-2454)CTG>CTT	p.L818L	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Silent_p.L386L|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.L336L|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Silent_p.L818L|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_Intron|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.L20L	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	818						integral to membrane	binding				0						TCCTGGATCTGCTCCTGGGCA	0.612		NA											19	39					2.35e-11	3.91e-11	1	0
LRRC7	57554	broad.mit.edu	37	1	70502126	70502126	+	Splice_Site	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:70502126G>T	uc001dep.2	+	18	2024	c.1994_splice	c.e18-1	p.E665_splice	LRRC7_uc009wbg.2_Intron|LRRC7_uc001deq.2_5'Flank	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7							centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						TTAAATTTCAGAATCAACTGA	0.393		NA											13	30					0.000151284	0.000232788	1	0
NEXN	91624	broad.mit.edu	37	1	78392542	78392542	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:78392542G>C	uc001dic.3	+	8	1126	c.829G>C	c.(829-831)GAG>CAG	p.E277Q	NEXN_uc001dia.3_Missense_Mutation_p.E263Q|NEXN_uc009wcb.1_Missense_Mutation_p.E199Q|NEXN_uc001dib.3_Missense_Mutation_p.E213Q|NEXN_uc001did.1_Missense_Mutation_p.E187Q|NEXN_uc001dif.1_Missense_Mutation_p.E169Q	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	277	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		TTTAGAAGAAGAGAAGCGTGC	0.363		NA											13	67					0	0	0	0
DPYD	1806	broad.mit.edu	37	1	98039345	98039345	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:98039345G>A	uc001drv.2	-	11	1447	c.1310C>T	c.(1309-1311)GCC>GTC	p.A437V		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	437					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TGAACCAAAGGCACTGATGAC	0.418		NA											18	109					0	0	0	0
LIX1L	128077	broad.mit.edu	37	1	145498680	145498680	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:145498680C>T	uc001enr.2	+	6	990	c.916C>T	c.(916-918)CGA>TGA	p.R306*	NBPF10_uc001emp.3_Intron|LIX1L_uc009wiu.1_5'Flank	NM_153713	NP_714924	Q8IVB5	LIX1L_HUMAN	Lix1 homolog (mouse) like	306										ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGATGAAGCCCGACTGGCAGG	0.587		NA											10	57					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152282437	152282437	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:152282437C>G	uc001ezu.1	-	3	4961	c.4925G>C	c.(4924-4926)AGT>ACT	p.S1642T		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1642	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGCCCATGACTGGCTCTATC	0.557		NA							Ichthyosis				47	323					0	0	0	0
CREB3L4	148327	broad.mit.edu	37	1	153945906	153945906	+	Missense_Mutation	SNP	C	C	T	rs146463170		TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:153945906C>T	uc001fdn.3	+	8	1129	c.863C>T	c.(862-864)TCC>TTC	p.S288F	CREB3L4_uc010pef.1_Missense_Mutation_p.S141F|CREB3L4_uc001fdo.3_Missense_Mutation_p.S268F|CREB3L4_uc001fdm.1_Missense_Mutation_p.S288F|CREB3L4_uc001fdp.1_Missense_Mutation_p.S268F|CREB3L4_uc001fdr.2_Missense_Mutation_p.S288F|CREB3L4_uc001fdq.2_Missense_Mutation_p.S268F	NM_130898	NP_570968	Q8TEY5	CR3L4_HUMAN	cAMP responsive element binding protein 3-like	288	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GCTCAAACTTCCAACAAAGCT	0.522		NA											16	78					0	0	0	0
FCRL2	79368	broad.mit.edu	37	1	157737023	157737023	+	Nonsense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:157737023G>C	uc001fre.2	-	6	1219	c.1160C>G	c.(1159-1161)TCA>TGA	p.S387*	FCRL2_uc001frd.2_Nonsense_Mutation_p.S134*|FCRL2_uc010phz.1_Nonsense_Mutation_p.S387*|FCRL2_uc009wsp.2_Intron	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	387	Ig-like C2-type 4.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CCACCCACCTGAGATGGAGAC	0.542		NA											13	71					0	0	0	0
MAEL	84944	broad.mit.edu	37	1	166991064	166991064	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:166991064G>C	uc001gdy.1	+	12	1348	c.1277G>C	c.(1276-1278)GGA>GCA	p.G426A	MAEL_uc001gdz.1_Missense_Mutation_p.G395A|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	426					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						CAAAAAGATGGATACAAATCT	0.368		NA											5	47					0	0	0	0
PARP1	142	broad.mit.edu	37	1	226564992	226564992	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:226564992G>C	uc001hqd.3	-	13	1929	c.1758C>G	c.(1756-1758)TTC>TTG	p.F586L		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	586					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		CCCAGGACCTGAATATCCAAT	0.507		NA						Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					3	199					0	0	0	0
ACTA1	58	broad.mit.edu	37	1	229568585	229568585	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:229568585C>T	uc001htm.2	-	3	277	c.172G>A	c.(172-174)GAC>AAC	p.D58N		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	58					muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	TGAGCCTCGTCGCCCACGTAG	0.597		NA											18	78					0	0	0	0
OR2T6	254879	broad.mit.edu	37	1	248551301	248551301	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:248551301G>A	uc001iei.1	+	1	392	c.392G>A	c.(391-393)CGC>CAC	p.R131H		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AACCCACTGCGCTATCCTGTC	0.567		NA											34	51					0	0	0	0
OR2T34	127068	broad.mit.edu	37	1	248738034	248738034	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:248738034G>C	uc001iep.1	-	1	25	c.25C>G	c.(25-27)CAG>GAG	p.Q9E		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTTTGATTCTGAGAAGTCTGA	0.443		NA											3	60					0	0	0	0
BMS1	9790	broad.mit.edu	37	10	43318597	43318597	+	Missense_Mutation	SNP	A	A	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr10:43318597A>G	uc001jaj.2	+	20	3522	c.3164A>G	c.(3163-3165)AAA>AGA	p.K1055R		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1055					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						GAAGTGGCCAAATTTGAAGGT	0.428		NA											4	91					0	0	0	0
GBF1	8729	broad.mit.edu	37	10	104128578	104128578	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr10:104128578C>G	uc001kux.1	+	23	3199	c.2959C>G	c.(2959-2961)CTC>GTC	p.L987V	GBF1_uc001kuy.1_Missense_Mutation_p.L987V|GBF1_uc001kuz.1_Missense_Mutation_p.L988V	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	987					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		ATTCACAGCTCTCAGCAGTGA	0.502		NA											14	83					0	0	0	0
TDRD1	56165	broad.mit.edu	37	10	115987042	115987042	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr10:115987042G>C	uc001lbg.1	+	23	3540	c.3387G>C	c.(3385-3387)CAG>CAC	p.Q1129H	TDRD1_uc001lbf.2_Missense_Mutation_p.Q1006H|TDRD1_uc001lbh.1_Missense_Mutation_p.Q1116H|TDRD1_uc001lbi.1_Missense_Mutation_p.Q1120H|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.Q838H	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	1129					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		CTCAAAGGCAGAGTGCTTTAA	0.358		NA											10	42					0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1078277	1078277	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:1078277C>G	uc001lsx.1	+	5	591	c.564C>G	c.(562-564)TTC>TTG	p.F188L		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	188	VWFD 1.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCGTGCTCTTCAGTCCCCTGG	0.662		NA											10	53					0	0	0	0
HBB	3043	broad.mit.edu	37	11	5248168	5248168	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:5248168G>A	uc001mae.1	-	1	134	c.84C>T	c.(82-84)GCC>GCT	p.A28A		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	28			A -> S (in Knossos).|A -> D (in Volga/Drenthe; unstable).|A -> V (in Grange-blanche; O(2) affinity up).		blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	ACCTGCCCAGGGCCTCACCAC	0.512		NA							Sickle_Cell_Trait				11	36					0	0	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653267	55653267	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:55653267C>G	uc010rip.1	+	2	455	c.363C>G	c.(361-363)CAC>CAG	p.H121Q	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	121	B box-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				CTCAGGAGCACCGGAATCACA	0.488		NA											5	28					0	0	0	0
OR1S2	219958	broad.mit.edu	37	11	57971290	57971290	+	Missense_Mutation	SNP	C	C	T	rs138124206		TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:57971290C>T	uc010rkb.1	-	1	364	c.364G>A	c.(364-366)GTC>ATC	p.V122I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	122	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TTGTCAGTGACGACAAACACA	0.473		NA											34	84					0	0	0	0
MS4A7	58475	broad.mit.edu	37	11	60161321	60161321	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:60161321G>A	uc001npe.2	+	7	855	c.710G>A	c.(709-711)CGG>CAG	p.R237Q	MS4A7_uc001npf.2_Missense_Mutation_p.R237Q|MS4A7_uc001npg.2_Missense_Mutation_p.R192Q|MS4A7_uc001nph.2_Missense_Mutation_p.R192Q|MS4A14_uc001npi.2_Intron	NM_206939	NP_996822	Q9GZW8	MS4A7_HUMAN	membrane-spanning 4-domains, subfamily A, member	237	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|central_nervous_system(1)	2						AGTTCTTCACGGTCTTGGATA	0.373		NA											15	81					0	0	0	0
TM7SF2	7108	broad.mit.edu	37	11	64883409	64883409	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:64883409G>A	uc001oct.2	+	10	1288	c.1141G>A	c.(1141-1143)GCG>ACG	p.A381T	TM7SF2_uc010rny.1_Missense_Mutation_p.A265T|TM7SF2_uc001ocu.2_Missense_Mutation_p.A354T|TM7SF2_uc001ocv.2_Missense_Mutation_p.A402T|uc009yqb.1_5'Flank	NM_003273	NP_003264	O76062	ERG24_HUMAN	transmembrane 7 superfamily member 2	381					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane	delta14-sterol reductase activity			ovary(1)	1						CTACTTCACCGCGCTGCTGGT	0.647		NA											13	43					0	0	0	0
KAT5	10524	broad.mit.edu	37	11	65481258	65481258	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:65481258G>A	uc001ofi.2	+	7	780	c.530G>A	c.(529-531)CGT>CAT	p.R177H	KAT5_uc001ofj.2_Missense_Mutation_p.R125H|KAT5_uc001ofk.2_Missense_Mutation_p.R210H|KAT5_uc010roo.1_Missense_Mutation_p.R158H|KAT5_uc001ofl.2_5'UTR	NM_006388	NP_006379	Q92993	KAT5_HUMAN	K(lysine) acetyltransferase 5 isoform 2	177					androgen receptor signaling pathway|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|double-strand break repair|interspecies interaction between organisms|negative regulation of interleukin-2 production|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nucleolus|perinuclear region of cytoplasm|Piccolo NuA4 histone acetyltransferase complex	androgen receptor binding|histone acetyltransferase activity|metal ion binding|repressing transcription factor binding|transcription coactivator activity				0						GGAGCCGCCCGTAGGGCAGTG	0.532		NA											4	16					0	0	0	0
PITPNM1	9600	broad.mit.edu	37	11	67262422	67262422	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:67262422G>A	uc001olx.2	-	17	2826	c.2637C>T	c.(2635-2637)ATC>ATT	p.I879I	PITPNM1_uc001olw.2_Silent_p.I161I|PITPNM1_uc001oly.2_Silent_p.I879I|PITPNM1_uc001olz.2_Silent_p.I878I	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	879	DDHD.				brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GCTCCTTCTCGATCACCTGCA	0.662		NA											11	82					0	0	0	0
DYRK4	8798	broad.mit.edu	37	12	4702231	4702231	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr12:4702231C>T	uc001qmx.2	+	4	342	c.182C>T	c.(181-183)GCG>GTG	p.A61V	DYRK4_uc009zeh.1_Missense_Mutation_p.A176V|DYRK4_uc001qmy.1_Missense_Mutation_p.A61V	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	61						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			CTGGGCTACGCGGAGCTGTGG	0.458		NA											15	59					0	0	0	0
PTGES3	10728	broad.mit.edu	37	12	57058264	57058264	+	Nonstop_Mutation	SNP	T	T	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr12:57058264T>G	uc001slu.3	-	8	777	c.482A>C	c.(481-483)TAA>TCA	p.*161S	PTGES3_uc001slw.3_RNA|PTGES3_uc010sqs.1_Nonstop_Mutation_p.*128S|PTGES3_uc001slv.3_Nonstop_Mutation_p.*131S|PTGES3_uc010sqt.1_Nonstop_Mutation_p.*140S|PTGES3_uc009zox.2_RNA	NM_006601	NP_006592	Q15185	TEBP_HUMAN	prostaglandin-E synthase 3	161					chaperone cofactor-dependent protein refolding|hormone biosynthetic process|prostaglandin biosynthetic process|signal transduction|telomere maintenance	cytosol|telomerase holoenzyme complex	prostaglandin-E synthase activity|telomerase activity|unfolded protein binding				0						CAATATTCCTTACTCCAGATC	0.308		NA											15	57					0	0	0	0
TMTC2	160335	broad.mit.edu	37	12	83289957	83289957	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr12:83289957G>C	uc001szt.2	+	3	1447	c.1015G>C	c.(1015-1017)GGG>CGG	p.G339R	TMTC2_uc001szr.1_Missense_Mutation_p.G339R|TMTC2_uc001szs.1_Missense_Mutation_p.G339R|TMTC2_uc010suk.1_Missense_Mutation_p.G94R	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	339						endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						AGAATGCAATGGGAAAACTGT	0.463		NA											10	73					0	0	0	0
TRPV4	59341	broad.mit.edu	37	12	110238456	110238456	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr12:110238456G>A	uc001tpj.1	-	4	915	c.820C>T	c.(820-822)CAG>TAG	p.Q274*	TRPV4_uc001tpg.1_Nonsense_Mutation_p.Q240*|TRPV4_uc001tph.1_Intron|TRPV4_uc001tpi.1_Intron|TRPV4_uc001tpk.1_Nonsense_Mutation_p.Q274*|TRPV4_uc001tpl.1_Nonsense_Mutation_p.Q274*	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	274	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TCCTTGGGCTGGAAGAAGCGC	0.607		NA											6	45					0	0	0	0
ATP2A2	488	broad.mit.edu	37	12	110780124	110780124	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr12:110780124C>G	uc001tqk.3	+	15	2752	c.2189C>G	c.(2188-2190)TCT>TGT	p.S730C	ATP2A2_uc001tql.3_Missense_Mutation_p.S730C|ATP2A2_uc010sxy.1_Missense_Mutation_p.S703C	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	730	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						AAAACCGCCTCTGAGATGGTC	0.557		NA											15	75					0	0	0	0
RNF6	6049	broad.mit.edu	37	13	26789040	26789040	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr13:26789040G>A	uc001uqo.2	-	5	1270	c.979C>T	c.(979-981)CAA>TAA	p.Q327*	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Nonsense_Mutation_p.Q327*|RNF6_uc001uqp.2_Nonsense_Mutation_p.Q327*|RNF6_uc001uqq.2_Nonsense_Mutation_p.Q327*|RNF6_uc010tdk.1_Intron	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	327	Arg-rich.				negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		CTTTCCCTTTGGGAATTATGA	0.418		NA											19	68					0	0	0	0
FARP1	10160	broad.mit.edu	37	13	99087939	99087939	+	Missense_Mutation	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr13:99087939C>A	uc001vnj.2	+	19	2589	c.2253C>A	c.(2251-2253)GAC>GAA	p.D751E	FARP1_uc001vnh.2_Missense_Mutation_p.D751E	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	751					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TTGGCATTGACAATCTTGTGG	0.507		NA											31	74					1.81e-10	2.99e-10	1	0
STK24	8428	broad.mit.edu	37	13	99171636	99171636	+	Missense_Mutation	SNP	C	C	T	rs147189846	by1000genomes	TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr13:99171636C>T	uc001vnm.1	-	2	405	c.170G>A	c.(169-171)CGG>CAG	p.R57Q	STK24_uc001vnn.1_Missense_Mutation_p.R45Q|STK24_uc010tim.1_Missense_Mutation_p.R45Q	NM_003576	NP_003567	Q9Y6E0	STK24_HUMAN	serine/threonine kinase 24 isoform a	57	Protein kinase.				cellular component disassembly involved in apoptosis|signal transduction	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(1)|lung(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TTTCTGAGTCCGATTGTCAAT	0.428		NA											27	121					0	0	0	0
RASA3	22821	broad.mit.edu	37	13	114817592	114817592	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr13:114817592C>T	uc001vui.2	-	3	343	c.212G>A	c.(211-213)CGG>CAG	p.R71Q	RASA3_uc010tkk.1_Missense_Mutation_p.R39Q|RASA3_uc001vuj.2_5'UTR|RASA3_uc010tkl.1_RNA	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	71	C2 1.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			ACGAAAGCTCCGAGGAATTTC	0.488		NA											7	28					0	0	0	0
ARHGAP5	394	broad.mit.edu	37	14	32563530	32563530	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr14:32563530G>A	uc001wrl.2	+	2	3894	c.3655G>A	c.(3655-3657)GAC>AAC	p.D1219N	ARHGAP5_uc001wrm.2_Missense_Mutation_p.D1219N|ARHGAP5_uc001wrn.2_Missense_Mutation_p.D1219N|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	1219					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		AATCACTTCTGACCAGGAGTT	0.353		NA											16	94					0	0	0	0
GPX2	2877	broad.mit.edu	37	14	65406430	65406430	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr14:65406430C>T	uc010tsn.1	-	3	436	c.349G>A	c.(349-351)GCC>ACC	p.A117T	CHURC1_uc010tsj.1_Intron|CHURC1_uc010tsk.1_Intron|FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|GPX2_uc001xhy.1_RNA	NM_002083	NP_002074	P18283	GPX2_HUMAN	glutathione peroxidase 2	117					response to oxidative stress	cytoplasm	electron carrier activity|glutathione peroxidase activity			ovary(1)	1				all cancers(60;0.00117)|OV - Ovarian serous cystadenocarcinoma(108;0.00557)|BRCA - Breast invasive adenocarcinoma(234;0.00971)	Glutathione(DB00143)	TTCAGGTAGGCGAAGACAGGA	0.537		NA											14	56					0	0	0	0
NDUFB1	4707	broad.mit.edu	37	14	92588014	92588014	+	Silent	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr14:92588014G>T	uc001yaf.2	-	1	140	c.108C>A	c.(106-108)CTC>CTA	p.L36L	NDUFB1_uc001yag.1_RNA|CPSF2_uc001yah.1_5'Flank	NM_004545	NP_004536	O75438	NDUB1_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	Error:Variant_position_missing_in_O75438_after_alignment					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0		all_cancers(154;0.0766)		COAD - Colon adenocarcinoma(157;0.205)	NADH(DB00157)	CAGCGACCCCGAGACCAAGGG	0.711		NA											9	63					3.07e-06	4.87e-06	1	0
RIN3	79890	broad.mit.edu	37	14	93118383	93118383	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr14:93118383C>T	uc001yap.2	+	6	1141	c.989C>T	c.(988-990)CCA>CTA	p.P330L	RIN3_uc010auk.2_5'UTR|RIN3_uc001yaq.2_Missense_Mutation_p.P255L|RIN3_uc001yar.1_5'UTR|RIN3_uc001yas.1_5'UTR	NM_024832	NP_079108	Q8TB24	RIN3_HUMAN	Ras and Rab interactor 3	330	Pro-rich.				endocytosis|signal transduction	cytoplasmic membrane-bounded vesicle|early endosome	GTPase activator activity|Ras GTPase binding			lung(2)|ovary(1)	3		all_cancers(154;0.0701)				CCAGGTCCCCCAGACCATCCG	0.433		NA											16	23					0	0	0	0
PPP1R14D	54866	broad.mit.edu	37	15	41120651	41120651	+	Silent	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr15:41120651C>G	uc001zmy.2	-	1	257	c.189G>C	c.(187-189)CGG>CGC	p.R63R	PPP1R14D_uc001zmz.2_Silent_p.R63R	NM_017726	NP_060196	Q9NXH3	PP14D_HUMAN	protein phosphatase 1, regulatory subunit 14D	63					regulation of phosphorylation	cytoplasm	protein phosphatase inhibitor activity				0		all_cancers(109;6.29e-14)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.88e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GGAGCTGGCCCCGGTCATACT	0.597		NA											8	68					0	0	0	0
SPTBN5	51332	broad.mit.edu	37	15	42173394	42173394	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr15:42173394C>T	uc001zos.2	-	13	2724	c.2391G>A	c.(2389-2391)AGG>AGA	p.R797R		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	832					actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCCCTGGGTTCCTCAGGCTTT	0.632		NA											6	33					0	0	0	0
ZSCAN29	146050	broad.mit.edu	37	15	43658483	43658483	+	Missense_Mutation	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr15:43658483G>T	uc001zrk.1	-	3	1194	c.1047C>A	c.(1045-1047)CAC>CAA	p.H349Q	ZSCAN29_uc001zrj.1_Missense_Mutation_p.H229Q|ZSCAN29_uc010bdf.1_Missense_Mutation_p.H348Q|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_Intron|ZSCAN29_uc001zrm.2_Missense_Mutation_p.H348Q	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	349					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		CCAGGCCAGAGTGAGAGGCTG	0.597		NA											14	39					3.27e-08	5.29e-08	1	0
IFT140	9742	broad.mit.edu	37	16	1642226	1642226	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr16:1642226C>T	uc002cmb.2	-	6	947	c.585G>A	c.(583-585)CTG>CTA	p.L195L		NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	195										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				ACCCCATCTTCAGCAAACTTC	0.507		NA											11	74					0	0	0	0
E4F1	1877	broad.mit.edu	37	16	2282237	2282237	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr16:2282237G>A	uc002cpm.2	+	4	529	c.481G>A	c.(481-483)GAG>AAG	p.E161K	E4F1_uc010bsi.2_Missense_Mutation_p.E161K|E4F1_uc010bsj.2_Missense_Mutation_p.E161K	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	161					cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						TGAGATGGCCGAGGCCCCGGG	0.662		NA											11	75					0	0	0	0
DNASE1L2	1775	broad.mit.edu	37	16	2287938	2287938	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr16:2287938C>T	uc002cpo.2	+	5	1156	c.762C>T	c.(760-762)GGC>GGT	p.G254G	DNASE1L2_uc002cpn.2_Silent_p.G233G|DNASE1L2_uc002cpp.2_Silent_p.G254G|DNASE1L2_uc002cpq.2_Silent_p.G254G	NM_001374	NP_001365	Q92874	DNSL2_HUMAN	deoxyribonuclease I-like 2 precursor	254					DNA catabolic process	extracellular region	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters|protein binding				0						TGGCCTGTGGCGCCCGCCTGC	0.672		NA											4	13					0	0	0	0
C16orf59	80178	broad.mit.edu	37	16	2514586	2514586	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr16:2514586G>C	uc002cqh.2	+	10	1250	c.1219G>C	c.(1219-1221)GCC>CCC	p.A407P	C16orf59_uc002cqf.1_3'UTR|C16orf59_uc002cqg.1_3'UTR|C16orf59_uc002cqi.2_Missense_Mutation_p.A240P|C16orf59_uc010uwb.1_3'UTR	NM_025108	NP_079384	Q7L2K0	CP059_HUMAN	hypothetical protein LOC80178	407											0		Ovarian(90;0.17)				GCCCTGGCTGGCCCTGTGCCG	0.682		NA											5	24					0	0	0	0
CACNG3	10368	broad.mit.edu	37	16	24372924	24372924	+	Silent	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr16:24372924C>A	uc002dmf.2	+	4	1888	c.688C>A	c.(688-690)CGA>AGA	p.R230R		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	230					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CTACAGGTATCGATTCCGGAG	0.537		NA											17	63					9.17e-09	1.49e-08	1	0
GPR114	221188	broad.mit.edu	37	16	57608852	57608852	+	Missense_Mutation	SNP	C	C	T	rs149449822		TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr16:57608852C>T	uc002elx.3	+	11	1419	c.1334C>T	c.(1333-1335)GCG>GTG	p.A445V	GPR114_uc010vhr.1_Missense_Mutation_p.R406W|GPR114_uc002ely.2_Missense_Mutation_p.A445V	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	445	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						CGGGAGCGGGCGGATGCACCA	0.652		NA											9	33					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578412	7578412	+	Missense_Mutation	SNP	A	A	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr17:7578412A>C	uc002gim.2	-	5	712	c.518T>G	c.(517-519)GTG>GGG	p.V173G	TP53_uc002gig.1_Missense_Mutation_p.V173G|TP53_uc002gih.2_Missense_Mutation_p.V173G|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V41G|TP53_uc010cng.1_Missense_Mutation_p.V41G|TP53_uc002gii.1_Missense_Mutation_p.V41G|TP53_uc010cnh.1_Missense_Mutation_p.V173G|TP53_uc010cni.1_Missense_Mutation_p.V173G|TP53_uc002gij.2_Missense_Mutation_p.V173G|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.V80G|TP53_uc002gio.2_Missense_Mutation_p.V41G|TP53_uc010vug.1_Missense_Mutation_p.V134G	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	173	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		V -> M (in LFS; germline mutation and in sporadic cancers; somatic mutation).|V -> W (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|V -> E (in sporadic cancers; somatic mutation).|V -> G (in sporadic cancers; somatic mutation).|V -> A (in sporadic cancers; somatic mutation).|V -> L (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.V173L(50)|p.V173M(39)|p.V173A(8)|p.V173V(8)|p.0?(7)|p.V173G(6)|p.V173fs*1(4)|p.V173fs*59(2)|p.V157_C176del20(1)|p.K164_P219del(1)|p.V172_R174delVVR(1)|p.V173fs*69(1)|p.P151_V173del23(1)|p.E171fs*61(1)|p.V173fs*23(1)|p.V172_E180delVVRRCPHHE(1)|p.V173E(1)|p.E171fs*1(1)|p.V173W(1)|p.V173fs*8(1)|p.H168fs*69(1)|p.E171_H179delEVVRRCPHH(1)|p.S149fs*72(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCAGCGCCTCACAACCTCCGT	0.662		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			32	35					0	0	0	0
DNAH2	146754	broad.mit.edu	37	17	7699949	7699949	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr17:7699949C>G	uc002giu.1	+	49	7856	c.7842C>G	c.(7840-7842)TTC>TTG	p.F2614L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2614	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ATTACCTCTTCAACCTTCGAG	0.572		NA											14	42					0	0	0	0
ALOX12B	242	broad.mit.edu	37	17	7983127	7983127	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr17:7983127G>A	uc002gjy.1	-	7	1148	c.887C>T	c.(886-888)CCG>CTG	p.P296L	uc010cnq.1_RNA	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	296	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GCCCAGGAACGGAGCCACCAT	0.527		NA								Multiple Myeloma(8;0.094)			4	17					0	0	0	0
CCDC144A	9720	broad.mit.edu	37	17	16612763	16612763	+	Missense_Mutation	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr17:16612763C>A	uc002gqk.1	+	5	1468	c.1392C>A	c.(1390-1392)AAC>AAA	p.N464K	CCDC144A_uc002gql.1_Intron|LOC162632_uc010cpj.1_5'Flank	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	464											0						GCAGTACAAACAACTATAAAA	0.348		NA											5	70					0.000157383	0.000241282	1	0
ABCA10	10349	broad.mit.edu	37	17	67178387	67178387	+	Silent	SNP	A	A	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr17:67178387A>G	uc010dfa.1	-	23	3555	c.2676T>C	c.(2674-2676)TGT>TGC	p.C892C	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Silent_p.C493C	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	892	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GAACAGGAAAACAATTCAATT	0.294		NA											4	21					0	0	0	0
DSEL	92126	broad.mit.edu	37	18	65180897	65180897	+	Missense_Mutation	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr18:65180897C>A	uc002lke.1	-	2	2203	c.979G>T	c.(979-981)GCC>TCC	p.A327S		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	317						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				AAAAGGGTGGCATAATAGAAC	0.383		NA											15	73					0.000219431	0.000335175	1	0
OCEL1	79629	broad.mit.edu	37	19	17337542	17337542	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr19:17337542C>T	uc002nfp.2	+	2	112	c.110C>T	c.(109-111)GCC>GTC	p.A37V		NM_024578	NP_078854	Q9H607	OCEL1_HUMAN	occludin/ELL domain containing 1	37	Pro-rich.									central_nervous_system(1)	1						GGACACGACGCCCCCCGCAGG	0.756		NA											13	6					0	0	0	0
SERTAD1	29950	broad.mit.edu	37	19	40929409	40929409	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr19:40929409C>T	uc002ont.3	-	2	204	c.45G>A	c.(43-45)GAG>GAA	p.E15E		NM_013376	NP_037508	Q9UHV2	SRTD1_HUMAN	SERTA domain containing 1	15					positive regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGGTTCCTTCTCCTCCTCCT	0.458		NA											9	41					0	0	0	0
ZNF404	342908	broad.mit.edu	37	19	44376738	44376738	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr19:44376738C>G	uc002oxs.3	-	2	1628	c.1619G>C	c.(1618-1620)AGA>ACA	p.R540T		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	543	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				ATGGTGAAATCTTTGATGTTG	0.343		NA											5	16					0	0	0	0
SNRPD2	6633	broad.mit.edu	37	19	46190835	46190835	+	Silent	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr19:46190835C>G	uc002pcw.2	-	3	630	c.333G>C	c.(331-333)CGG>CGC	p.R111R	SNRPD2_uc002pcv.2_Silent_p.R101R	NM_004597	NP_004588	P62316	SMD2_HUMAN	small nuclear ribonucleoprotein D2 isoform 1	111					ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly	catalytic step 2 spliceosome|cytosol|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	protein binding				0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00546)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.194)		TGAGCGGGTTCCGCAGGACCA	0.547		NA											9	43					0	0	0	0
ANTXR1	84168	broad.mit.edu	37	2	69302734	69302734	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr2:69302734C>T	uc002sfg.2	+	7	861	c.505C>T	c.(505-507)CGA>TGA	p.R169*	ANTXR1_uc002sfe.2_Nonsense_Mutation_p.R169*|ANTXR1_uc002sff.2_Nonsense_Mutation_p.R169*|ANTXR1_uc002sfd.2_Nonsense_Mutation_p.R169*	NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	169	Extracellular (Potential).|VWFA.				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						TAATAGGTCTCGAGATCTTGG	0.418		NA							Familial_Infantile_Hemangioma				20	151					0	0	0	0
LRP2	4036	broad.mit.edu	37	2	170058335	170058335	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr2:170058335C>T	uc002ues.2	-	44	8468	c.8255G>A	c.(8254-8256)CGA>CAA	p.R2752Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2752	Extracellular (Potential).|LDL-receptor class A 17.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TTGGACACATCGCCCATTGGC	0.483		NA											9	33					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179542570	179542570	+	Missense_Mutation	SNP	T	T	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr2:179542570T>C	uc010zfg.1	-	143	30561	c.30337A>G	c.(30337-30339)ATT>GTT	p.I10113V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.I6774V|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11040							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGGAACAATTTCTTCTTCA	0.418		NA											16	93					0	0	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171531	207171531	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr2:207171531C>T	uc002vbp.2	+	5	2529	c.2279C>T	c.(2278-2280)TCA>TTA	p.S760L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	760							nucleic acid binding|zinc ion binding			ovary(3)	3						CCTCTTCTGTCAGTTACTGAG	0.408		NA											43	158					0	0	0	0
ABCA12	26154	broad.mit.edu	37	2	215914369	215914369	+	Missense_Mutation	SNP	A	A	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr2:215914369A>G	uc002vew.2	-	6	894	c.674T>C	c.(673-675)CTA>CCA	p.L225P	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	225					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTGTTTGTTTAGTTCTTGGAG	0.388		NA											7	36					0	0	0	0
C20orf46	55321	broad.mit.edu	37	20	1161695	1161695	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr20:1161695G>A	uc010gaa.1	-	3	787	c.568C>T	c.(568-570)CTC>TTC	p.L190F	C20orf46_uc002weq.1_Missense_Mutation_p.L190F	NM_018354	NP_060824	Q9NUR3	CT046_HUMAN	hypothetical protein LOC55321	190	Helical; (Potential).					integral to membrane	protein binding			ovary(1)	1						ACCGACAAGAGCATGCCGCCC	0.652		NA											4	42					0	0	0	0
BHLHE23	128408	broad.mit.edu	37	20	61637638	61637638	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr20:61637638G>A	uc002yeb.2	-	1	750	c.441C>T	c.(439-441)GCC>GCT	p.A147A		NM_080606	NP_542173	Q8NDY6	BHE23_HUMAN	basic helix-loop-helix domain containing, class	147	Helix-loop-helix motif.				transcription, DNA-dependent	nucleus	DNA binding				0						TATAGTTCTTGGCGAGCAGCA	0.677		NA											6	28					0	0	0	0
TOP3B	8940	broad.mit.edu	37	22	22314743	22314743	+	Missense_Mutation	SNP	A	A	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr22:22314743A>C	uc002zvs.2	-	14	2039	c.1604T>G	c.(1603-1605)CTC>CGC	p.L535R	TOP3B_uc010gtm.1_Missense_Mutation_p.L80R|TOP3B_uc002zvr.2_Missense_Mutation_p.L260R|TOP3B_uc010gtl.2_Missense_Mutation_p.L535R|TOP3B_uc002zvt.3_Missense_Mutation_p.L535R	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	535					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		GGTGGGCTTGAGCCGGCGCCC	0.612		NA											6	55					0	0	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869426	22869426	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr22:22869426C>G	uc002zwe.2	-	2	782	c.529G>C	c.(529-531)GAT>CAT	p.D177H	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		CTTTTGGAATCTCTGCTGTTT	0.453		NA											14	88					0	0	0	0
GAS2L1	10634	broad.mit.edu	37	22	29708004	29708004	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr22:29708004G>A	uc003afa.1	+	7	1763	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	GAS2L1_uc010gvm.1_Intron|GAS2L1_uc003afb.1_3'UTR|GAS2L1_uc003afc.1_Missense_Mutation_p.E522K|GAS2L1_uc003afd.1_Nonsense_Mutation_p.W521*|GAS2L1_uc003afe.1_Nonsense_Mutation_p.W521*	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	522					cell cycle arrest	cytoplasm|cytoskeleton					0						CCGGCGCCTGGAAGAGGAGTT	0.692		NA											30	132					0	0	0	0
DUSP18	150290	broad.mit.edu	37	22	31059928	31059928	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr22:31059928C>T	uc003aiu.2	-	2	564	c.63G>A	c.(61-63)TCG>TCA	p.S21S	SLC35E4_uc003ait.2_Intron|DUSP18_uc010gwa.1_RNA|DUSP18_uc003aiw.1_Silent_p.S21S	NM_152511	NP_689724	Q8NEJ0	DUS18_HUMAN	dual specificity phosphatase 18	21						cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0						TGGTTATCTGCGAGAGGCCGC	0.557		NA											5	63					0	0	0	0
MON1A	84315	broad.mit.edu	37	3	49947692	49947692	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr3:49947692G>A	uc003cxz.2	-	4	1656	c.1530C>T	c.(1528-1530)TTC>TTT	p.F510F	MON1A_uc003cya.2_Silent_p.F348F|MON1A_uc003cyb.2_Silent_p.F348F	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	413							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GGCGCTCCTGGAAGCGGCGGC	0.627		NA											13	39					0	0	0	0
KIAA1524	57650	broad.mit.edu	37	3	108271206	108271206	+	Missense_Mutation	SNP	T	T	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr3:108271206T>A	uc003dxb.3	-	20	2691	c.2422A>T	c.(2422-2424)ACA>TCA	p.T808S		NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	808	Potential.					cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						TGTACTTTTGTTTTTTGATGC	0.313		NA											4	13					0	0	0	0
ABCC5	10057	broad.mit.edu	37	3	183695333	183695333	+	Missense_Mutation	SNP	T	T	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr3:183695333T>C	uc003fmg.2	-	10	1541	c.1376A>G	c.(1375-1377)GAA>GGA	p.E459G	ABCC5_uc011bqt.1_5'UTR|ABCC5_uc010hxl.2_Missense_Mutation_p.E459G	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	459	ABC transmembrane type-1 1.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CACTGAGGCTTCTGAGAGGGA	0.488		NA											13	27					0	0	0	0
GP5	2814	broad.mit.edu	37	3	194118222	194118222	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr3:194118222G>A	uc003ftv.1	-	2	821	c.790C>T	c.(790-792)CAT>TAT	p.H264Y		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	264	Extracellular (Potential).|LRR 8.				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		TTGTGCGAATGAAGAAAGAGC	0.602		NA											13	70					0	0	0	0
UGT2B10	7365	broad.mit.edu	37	4	69870669	69870669	+	Missense_Mutation	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:69870669C>A	uc011cao.1	-	9	1517	c.1381G>T	c.(1381-1383)GCT>TCT	p.A461S	UGT2B10_uc011can.1_Missense_Mutation_p.A377S			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	498	Helical; (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GCCACACAGGCCAGCAGGAAC	0.448		NA											10	141					2.18e-05	3.4e-05	1	0
SLC4A4	8671	broad.mit.edu	37	4	72121007	72121007	+	Missense_Mutation	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:72121007G>T	uc003hfy.2	+	3	261	c.144G>T	c.(142-144)AAG>AAT	p.K48N	SLC4A4_uc010iic.2_Missense_Mutation_p.K48N|SLC4A4_uc010iib.2_Missense_Mutation_p.K48N|SLC4A4_uc003hfz.2_Missense_Mutation_p.K48N|SLC4A4_uc003hga.2_5'UTR	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	48	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			ACAAGAGAAAGACAGGGCACA	0.438		NA											38	119					1.31e-17	2.19e-17	1	0
ART3	419	broad.mit.edu	37	4	77003501	77003501	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:77003501C>T	uc003hjo.2	+	3	713	c.594C>T	c.(592-594)CTC>CTT	p.L198L	ART3_uc003hji.2_Silent_p.L198L|ART3_uc003hjj.2_Silent_p.L198L|ART3_uc003hjk.2_Silent_p.L198L|ART3_uc010ija.1_Silent_p.L198L|ART3_uc003hjn.2_Silent_p.L198L|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Silent_p.L168L|ART3_uc010ijc.2_Silent_p.L168L|ART3_uc010ijd.2_Silent_p.L168L	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	198					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ATGACCAGCTCACTGTGTTAT	0.408		NA											13	38					0	0	0	0
UNC5C	8633	broad.mit.edu	37	4	96222864	96222864	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:96222864C>T	uc003htp.1	-	3	537	c.383G>A	c.(382-384)CGC>CAC	p.R128H	UNC5C_uc010ilc.1_Missense_Mutation_p.R128H|UNC5C_uc003htq.2_Missense_Mutation_p.R128H	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	128	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		CACTTGCTGGCGCGAAATCTC	0.473		NA											13	28					0	0	0	0
ALPK1	80216	broad.mit.edu	37	4	113352354	113352354	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:113352354C>T	uc003iap.3	+	11	1930	c.1651C>T	c.(1651-1653)CAA>TAA	p.Q551*	ALPK1_uc003ian.3_Nonsense_Mutation_p.Q551*|ALPK1_uc011cfx.1_Nonsense_Mutation_p.Q473*|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Nonsense_Mutation_p.Q379*	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	551							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		CTCCTTGGATCAAGATGTGGA	0.493		NA											9	69					0	0	0	0
ZNF827	152485	broad.mit.edu	37	4	146807275	146807275	+	Missense_Mutation	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:146807275C>A	uc003ikn.2	-	4	1350	c.1302G>T	c.(1300-1302)CAG>CAT	p.Q434H	ZNF827_uc003ikm.2_Missense_Mutation_p.Q434H|ZNF827_uc010iox.2_Missense_Mutation_p.Q84H	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	434	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					ACAGCTGGCACTGAAAGGTCT	0.522		NA											7	16					8.13e-05	0.000125535	1	0
DCHS2	54798	broad.mit.edu	37	4	155157872	155157872	+	Silent	SNP	T	T	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:155157872T>A	uc003inw.2	-	25	6567	c.6567A>T	c.(6565-6567)CCA>CCT	p.P2189P		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2189	Cadherin 19.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TGGAACTCAATGGAGGGCAGC	0.468		NA											12	31					0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155157874	155157874	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:155157874G>A	uc003inw.2	-	25	6565	c.6565C>T	c.(6565-6567)CCA>TCA	p.P2189S		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2189	Cadherin 19.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GAACTCAATGGAGGGCAGCCA	0.463		NA											13	29					0	0	0	0
FSTL5	56884	broad.mit.edu	37	4	162307346	162307346	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:162307346G>A	uc003iqh.2	-	16	2533	c.2097C>T	c.(2095-2097)GTC>GTT	p.V699V	FSTL5_uc003iqi.2_Silent_p.V698V|FSTL5_uc010iqv.2_Silent_p.V689V|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	699						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CATCTGGAGAGACATATGGAG	0.473		NA											13	66					0	0	0	0
ANP32C	23520	broad.mit.edu	37	4	165118599	165118599	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:165118599G>C	uc011cjk.1	-	1	265	c.265C>G	c.(265-267)CTA>GTA	p.L89V	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	89	LRR 3.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		CTTAAATATAGATGCGTGAGG	0.408		NA											27	133					0	0	0	0
DDX60	55601	broad.mit.edu	37	4	169215016	169215016	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr4:169215016G>A	uc003irp.2	-	7	1096	c.804C>T	c.(802-804)TGC>TGT	p.C268C		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	268							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AAGATAATGAGCATGAAGTAA	0.413		NA											14	78					0	0	0	0
TRIP13	9319	broad.mit.edu	37	5	908529	908529	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:908529C>T	uc003jbr.2	+	9	929	c.819C>T	c.(817-819)GCC>GCT	p.A273A	TRIP13_uc010ite.1_Silent_p.A273A	NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	273					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			CATCAGATGCCATCCGCGTGG	0.542		NA											13	73					0	0	0	0
PRKAA1	5562	broad.mit.edu	37	5	40798208	40798208	+	Silent	SNP	A	A	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:40798208A>G	uc003jmc.2	-	1	90	c.84T>C	c.(82-84)ATT>ATC	p.I28I	PRKAA1_uc003jmb.2_Silent_p.I28I	NM_006251	NP_006242	Q13131	AAPK1_HUMAN	protein kinase, AMP-activated, alpha 1 catalytic	28	Protein kinase.				activation of MAPK activity|cell cycle arrest|cholesterol biosynthetic process|fatty acid biosynthetic process|insulin receptor signaling pathway|negative regulation of glucosylceramide biosynthetic process|positive regulation of anti-apoptosis|positive regulation of cholesterol biosynthetic process|regulation of fatty acid oxidation|response to hypoxia	cytosol	ATP binding|cAMP-dependent protein kinase activity|metal ion binding|protein binding			breast(1)	1					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Phenformin(DB00914)	TGTCACCCAGAATGTAGTGGC	0.602		NA											8	32					0	0	0	0
BHMT2	23743	broad.mit.edu	37	5	78379594	78379594	+	Missense_Mutation	SNP	A	A	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:78379594A>G	uc003kft.2	+	7	948	c.925A>G	c.(925-927)AGG>GGG	p.R309G	BHMT2_uc011cth.1_Missense_Mutation_p.R245G	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	309					methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	GGCCCCAGAAAGGGGCTTTTT	0.537		NA											6	32					0	0	0	0
CMYA5	202333	broad.mit.edu	37	5	79028659	79028659	+	Silent	SNP	T	T	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:79028659T>C	uc003kgc.2	+	2	4143	c.4071T>C	c.(4069-4071)TCT>TCC	p.S1357S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1357						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CTACAGCATCTGTAACTAAGC	0.373		NA											9	33					0	0	0	0
PAM	5066	broad.mit.edu	37	5	102342680	102342680	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:102342680C>T	uc003knw.2	+	18	2352	c.1979C>T	c.(1978-1980)TCA>TTA	p.S660L	PAM_uc003kns.2_Missense_Mutation_p.S553L|PAM_uc003knt.2_Missense_Mutation_p.S660L|PAM_uc003knu.2_Missense_Mutation_p.S660L|PAM_uc003knv.2_Missense_Mutation_p.S660L|PAM_uc011cuz.1_Missense_Mutation_p.S563L|PAM_uc003knz.2_5'Flank	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	660	Peptidyl-alpha-hydroxyglycine alpha- amidating lyase (By similarity).|NHL 3.|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	GTGCAGTTTTCACCAAGTGGA	0.438		NA											13	66					0	0	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140871168	140871168	+	Missense_Mutation	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:140871168C>A	uc003lla.1	+	1	2361	c.2361C>A	c.(2359-2361)TTC>TTA	p.F787L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Missense_Mutation_p.F787L	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	787	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGTGACTTCACTTTTCTAA	0.632		NA											9	45					3.07e-06	4.87e-06	1	0
HAND1	9421	broad.mit.edu	37	5	153855399	153855399	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:153855399C>T	uc003lvn.2	-	2	871	c.615G>A	c.(613-615)CCG>CCA	p.P205P		NM_004821	NP_004812	O96004	HAND1_HUMAN	basic helix-loop-helix transcription factor	205					angiogenesis|cardiac left ventricle formation|cardiac right ventricle formation|cardiac septum morphogenesis|heart looping|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|trophectodermal cell differentiation|ventricular cardiac muscle tissue morphogenesis	cytoplasm|nucleolus|nucleoplasm	bHLH transcription factor binding|DNA binding|protein homodimerization activity|transcription coactivator activity				0	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			AGACTTGCTGCGGCCAGCCGG	0.632		NA											8	31					0	0	0	0
BTN1A1	696	broad.mit.edu	37	6	26509261	26509261	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr6:26509261G>C	uc003nif.3	+	7	1460	c.1440G>C	c.(1438-1440)GAG>GAC	p.E480D		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	480	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						ATGGGCCTGAGAGGGTCACAG	0.552		NA											14	54					0	0	0	0
DDR1	780	broad.mit.edu	37	6	30866738	30866738	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr6:30866738C>T	uc003nrr.2	+	18	2784	c.2525C>T	c.(2524-2526)GCC>GTC	p.A842V	DDR1_uc010jse.2_Missense_Mutation_p.A805V|DDR1_uc003nrq.2_Missense_Mutation_p.A805V|DDR1_uc003nrs.2_Missense_Mutation_p.A842V|DDR1_uc003nrt.2_Missense_Mutation_p.A805V|DDR1_uc011dms.1_Missense_Mutation_p.A823V|DDR1_uc003nru.2_Missense_Mutation_p.A805V|DDR1_uc003nrv.2_Missense_Mutation_p.A848V|DDR1_uc003nrz.1_Missense_Mutation_p.A167V	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	842	Cytoplasmic (Potential).|Protein kinase.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CTCTGTAGGGCCCAGCCCTTT	0.617		NA											19	69					0	0	0	0
CRISP3	10321	broad.mit.edu	37	6	49703279	49703279	+	Missense_Mutation	SNP	T	T	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr6:49703279T>C	uc003ozs.2	-	4	230	c.215A>G	c.(214-216)AAT>AGT	p.N72S		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	72					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CTTTTGGGCATTTGCTGCAGC	0.368		NA											21	97					0	0	0	0
TBX18	9096	broad.mit.edu	37	6	85472362	85472362	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr6:85472362G>C	uc003pkl.1	-	2	397	c.397C>G	c.(397-399)CTG>GTG	p.L133V	TBX18_uc010kbq.1_5'UTR	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	133					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		GGCGAGGGCAGAGGGGTCCCG	0.697		NA											10	57					0	0	0	0
RNF216	54476	broad.mit.edu	37	7	5780720	5780720	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:5780720C>G	uc003soy.1	-	4	947	c.757G>C	c.(757-759)GAG>CAG	p.E253Q	RNF216_uc010ksz.1_5'UTR|RNF216_uc010kta.1_Intron|RNF216_uc011jwj.1_Intron|RNF216_uc003sox.1_Missense_Mutation_p.E310Q	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	253					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		GGACCTGGCTCTTCATCATCA	0.517		NA											10	94					0	0	0	0
THSD7A	221981	broad.mit.edu	37	7	11514030	11514030	+	Missense_Mutation	SNP	C	C	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:11514030C>A	uc003ssf.3	-	8	2435	c.2183G>T	c.(2182-2184)TGC>TTC	p.C728F		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	728	TSP type-1 7.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		GCCGACAGAGCAGGAGGCCTC	0.507		NA								HNSCC(18;0.044)			16	67					0.000566183	0.00085854	1	0
CPVL	54504	broad.mit.edu	37	7	29035453	29035453	+	Missense_Mutation	SNP	G	G	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:29035453G>C	uc003szv.2	-	13	1485	c.1366C>G	c.(1366-1368)CTG>GTG	p.L456V	CPVL_uc003szw.2_Missense_Mutation_p.L456V|CPVL_uc003szx.2_Missense_Mutation_p.L456V	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	456					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						AAAGCTCTCAGAGGCTGGTCA	0.343		NA											4	35					0	0	0	0
INMT	11185	broad.mit.edu	37	7	30791838	30791838	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:30791838C>T	uc003tbs.1	+	1	88	c.72C>T	c.(70-72)TAC>TAT	p.Y24Y	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_Intron|INMT_uc010kwd.1_Silent_p.Y24Y	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	24						cytoplasm	amine N-methyltransferase activity				0						TGGCTACTTACTACAGCTTCG	0.577		NA											52	101					0	0	0	0
FKBP9	11328	broad.mit.edu	37	7	33028259	33028259	+	Missense_Mutation	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:33028259G>T	uc003tdh.2	+	6	1215	c.1034G>T	c.(1033-1035)GGA>GTA	p.G345V	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Missense_Mutation_p.G398V|FKBP9_uc011kam.1_Missense_Mutation_p.G113V|FKBP9_uc003tdg.2_Missense_Mutation_p.G345V	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	345	PPIase FKBP-type 3.				protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			GGAGAGGAAGGAAGAGGTGAG	0.463		NA											10	54					1.77e-08	2.87e-08	1	0
ZP3	7784	broad.mit.edu	37	7	76062842	76062842	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:76062842C>G	uc003ufd.3	+	4	601	c.591C>G	c.(589-591)CAC>CAG	p.H197Q	ZP3_uc003ufc.3_Missense_Mutation_p.H146Q|ZP3_uc003ufe.2_Missense_Mutation_p.H105Q	NM_001110354	NP_001103824	P21754	ZP3_HUMAN	zona pellucida glycoprotein 3 isoform 1	197	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|blastocyst formation|egg coat formation|humoral immune response mediated by circulating immunoglobulin|intracellular protein transport|negative regulation of binding of sperm to zona pellucida|negative regulation of transcription, DNA-dependent|oocyte development|phosphatidylinositol-mediated signaling|positive regulation of acrosomal vesicle exocytosis|positive regulation of acrosome reaction|positive regulation of antral ovarian follicle growth|positive regulation of calcium ion import|positive regulation of calcium ion transport via store-operated calcium channel activity|positive regulation of humoral immune response|positive regulation of interferon-gamma production|positive regulation of interleukin-4 production|positive regulation of leukocyte migration|positive regulation of ovarian follicle development|positive regulation of phosphatidylinositol biosynthetic process|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of T cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of type IV hypersensitivity|protein kinase C signaling cascade	endoplasmic reticulum|extracellular space|Golgi apparatus|integral to membrane|multivesicular body|outer acrosomal membrane|perinuclear region of cytoplasm|plasma membrane|proteinaceous extracellular matrix	acrosin binding|manganese ion transmembrane transporter activity|receptor activity|sugar binding				0						ATGCAGCCCACCTCCAGGCAG	0.502		NA											14	109					0	0	0	0
ABCB4	5244	broad.mit.edu	37	7	87035604	87035604	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:87035604G>A	uc003uiv.1	-	26	3583	c.3507C>T	c.(3505-3507)CAC>CAT	p.H1169H	ABCB4_uc003uiw.1_Silent_p.H1162H|ABCB4_uc003uix.1_Silent_p.H1115H	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1169	ABC transporter 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TTTAACTTACGTGGGGTAACG	0.393		NA											19	175					0	0	0	0
SSPO	23145	broad.mit.edu	37	7	149489170	149489170	+	Silent	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr7:149489170C>T	uc010lpk.2	+	37	5415	c.5415C>T	c.(5413-5415)GAC>GAT	p.D1805D		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1805	TSP type-1 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCCCTCAGGACGGCTGCCCCA	0.632		NA											11	56					0	0	0	0
HNF4G	3174	broad.mit.edu	37	8	76476246	76476246	+	Missense_Mutation	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr8:76476246G>T	uc003yaq.2	+	11	1412	c.1142G>T	c.(1141-1143)GGC>GTC	p.G381V	HNF4G_uc003yar.2_Missense_Mutation_p.G418V	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	381					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding	p.G381D(1)		ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			CCACCACAAGGCTCTGGGCAA	0.448		NA											21	138					1.96e-10	3.22e-10	1	0
PDP1	54704	broad.mit.edu	37	8	94934378	94934378	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr8:94934378C>T	uc003yge.2	+	2	360	c.91C>T	c.(91-93)CAT>TAT	p.H31Y	PDP1_uc003ygf.2_Missense_Mutation_p.H56Y|PDP1_uc010max.2_Missense_Mutation_p.H56Y|PDP1_uc011lgm.1_Missense_Mutation_p.H31Y|PDP1_uc011lgn.1_Missense_Mutation_p.H90Y	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	31					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						CCACCACAAACATCTCTGTTG	0.483		NA											10	100					0	0	0	0
ASAP1	50807	broad.mit.edu	37	8	131127878	131127878	+	Missense_Mutation	SNP	T	T	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr8:131127878T>A	uc003yta.1	-	22	2196	c.2168A>T	c.(2167-2169)GAC>GTC	p.D723V	ASAP1_uc003ysz.1_Missense_Mutation_p.D534V|ASAP1_uc011liw.1_Missense_Mutation_p.D716V	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	723					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						ACTCACTTTGTCATCCAGATC	0.413		NA											71	233					0	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139165105	139165105	+	Missense_Mutation	SNP	C	C	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr8:139165105C>T	uc003yuy.2	-	13	1784	c.1613G>A	c.(1612-1614)AGA>AAA	p.R538K	FAM135B_uc003yux.2_Missense_Mutation_p.R439K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.R100K|FAM135B_uc003yvb.2_Missense_Mutation_p.R100K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	538										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGGACTCCTTCTAGAAGTATC	0.502		NA								HNSCC(54;0.14)			8	91					0	0	0	0
KIAA0368	23392	broad.mit.edu	37	9	114184479	114184479	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr9:114184479G>A	uc004bfe.1	-	15	1801	c.1801C>T	c.(1801-1803)CGG>TGG	p.R601W	KIAA0368_uc010muc.1_Missense_Mutation_p.R423W	NM_001080398	NP_001073867			KIAA0368 protein												0						TGTGGCATCCGACTGCAAAAG	0.353		NA											14	56					0	0	0	0
ARSD	414	broad.mit.edu	37	X	2833637	2833637	+	Silent	SNP	G	G	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chrX:2833637G>T	uc004cqy.2	-	6	1036	c.960C>A	c.(958-960)GGC>GGA	p.G320G	ARSD_uc004cqz.1_Intron|ARSD_uc004cra.1_Silent_p.G320G	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	320						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CACCATATAAGCCATGCTGAC	0.512		NA											8	72					5.18e-06	8.12e-06	1	0
ZFX	7543	broad.mit.edu	37	X	24228854	24228854	+	Silent	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chrX:24228854G>A	uc004dbf.2	+	9	2037	c.1779G>A	c.(1777-1779)ACG>ACA	p.T593T	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Silent_p.T632T|ZFX_uc010nfz.2_Silent_p.T249T	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	593	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						ACTTGAAAACGCATGTCAAAA	0.438		NA											7	67					0	0	0	0
ZNF630	57232	broad.mit.edu	37	X	47919827	47919827	+	Splice_Site	SNP	A	A	T			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chrX:47919827A>T	uc004div.3	-	4	490	c.238_splice	c.e4+1	p.D80_splice	ZNF630_uc010nhz.1_Splice_Site|ZNF630_uc004diw.2_Splice_Site	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						ATTCTCACTTACCTGGGTAGA	0.428		NA											10	81					0	0	0	0
TMEM35	59353	broad.mit.edu	37	X	100349902	100349902	+	Missense_Mutation	SNP	C	C	G			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chrX:100349902C>G	uc004egw.2	+	2	617	c.461C>G	c.(460-462)TCC>TGC	p.S154C		NM_021637	NP_067650	Q53FP2	TMM35_HUMAN	transmembrane protein 35	154						cytoplasmic membrane-bounded vesicle|integral to membrane|peroxisomal membrane					0						GAGCAACCCTCCTTATATGAG	0.532		NA											11	71					0	0	0	0
FMR1NB	158521	broad.mit.edu	37	X	147106392	147106392	+	Missense_Mutation	SNP	G	G	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chrX:147106392G>A	uc004fcm.2	+	5	714	c.640G>A	c.(640-642)GCC>ACC	p.A214T		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	214	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CAGCGAACCGGCCGATGATTT	0.378		NA											11	76					0	0	0	0
MAGEA11	4110	broad.mit.edu	37	X	148794917	148794917	+	Splice_Site	SNP	T	T	A			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chrX:148794917T>A	uc004fdq.2	+	2	198	c.96_splice	c.e2+2	p.Q32_splice	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Intron	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a							cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GGACTCCAGGTCAGTAGGGAC	0.592		NA											16	37					0	0	0	0
CAPZA1	829	broad.mit.edu	37	1	113209755	113209758	+	Frame_Shift_Del	DEL	ACTA	ACTA	-			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr1:113209755_113209758delACTA	uc001ecj.1	+	8	1037_1040	c.645_648delACTA	c.(643-648)TCACTAfs	p.S215fs		NM_006135	NP_006126	P52907	CAZA1_HUMAN	F-actin capping protein alpha-1 subunit	215_216					actin cytoskeleton organization|actin filament capping|blood coagulation|cellular component movement|innate immune response|protein complex assembly	cytosol|extracellular region|F-actin capping protein complex|WASH complex	actin binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACAGGATTCACTAACTGTTTCGG	0.368		NA											12	74	---	---	---	---	NA	NA	NA	NA
DCHS1	8642	broad.mit.edu	37	11	6662746	6662748	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr11:6662746_6662748delCAG	uc001mem.1	-	2	507_509	c.97_99delCTG	c.(97-99)CTGdel	p.L33del		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	33					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCCAGCCCCcagcagcagcagc	0.527		NA											2	4	---	---	---	---	NA	NA	NA	NA
ARID2	196528	broad.mit.edu	37	12	46243822	46243823	+	Frame_Shift_Ins	INS	-	-	C			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr12:46243822_46243823insC	uc001ros.1	+	15	1916_1917	c.1916_1917insC	c.(1915-1917)ATCfs	p.I639fs	ARID2_uc001ror.2_Frame_Shift_Ins_p.I639fs|ARID2_uc009zkg.1_Frame_Shift_Ins_p.I95fs|ARID2_uc009zkh.1_Frame_Shift_Ins_p.I266fs|ARID2_uc001rou.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	639					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TTTTCAGGAATCCCTCATGGAT	0.337		NA											24	62	---	---	---	---	NA	NA	NA	NA
NARG2	79664	broad.mit.edu	37	15	60745913	60745914	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr15:60745913_60745914delTC	uc002agp.2	-	9	1248_1249	c.1013_1014delGA	c.(1012-1014)AGAfs	p.R338fs	NARG2_uc002ago.2_Frame_Shift_Del_p.R201fs|NARG2_uc002agq.3_Frame_Shift_Del_p.R6fs|NARG2_uc010bgk.2_Frame_Shift_Del_p.R338fs|NARG2_uc002agr.1_Frame_Shift_Del_p.R338fs	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	338						nucleus				ovary(1)|lung(1)	2						AGATTTGATTTCTCTCTCTCAT	0.317		NA											12	76	---	---	---	---	NA	NA	NA	NA
GRIN2A	2903	broad.mit.edu	37	16	10274133	10274135	+	In_Frame_Del	DEL	CGT	CGT	-			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr16:10274133_10274135delCGT	uc002czo.3	-	2	682_684	c.134_136delACG	c.(133-138)GACGTG>GTG	p.D45del	GRIN2A_uc010uym.1_In_Frame_Del_p.D45del|GRIN2A_uc002czr.3_In_Frame_Del_p.D45del|GRIN2A_uc010buk.2_In_Frame_Del_p.D45del	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	45	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGCTCTGTCACGTCGTGGCTGTG	0.695		NA											37	87	---	---	---	---	NA	NA	NA	NA
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC			TCGA-D6-6826-01A-11D-1912-08	TCGA-D6-6826-10A-01D-1912-08	 	 	 	 	 	 	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	368030ac-f855-452a-a3d3-3698ab9a00dd	fec68b4e-7544-4bf0-8ceb-10e833435522	g.chr5:112824048_112824049insGCC	uc003kql.3	-	1	479_480	c.63_64insGGC	c.(61-66)insGGC	p.21_22insG		NM_001085377	NP_001078846	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		ctgctgccgctgccgccgccgc	0.391		NA											8	11	---	---	---	---	NA	NA	NA	NA
